Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 94 of 117
Found at i:17849400 original size:26 final size:26
Alignment explanation
Indices: 17849364--17849416 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17849354 CCGGTCCGAT
*
17849364 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17849390 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17849416 C
1 C
17849417 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17850550 original size:159 final size:159
Alignment explanation
Indices: 17850255--17850600 Score: 437
Period size: 159 Copynumber: 2.2 Consensus size: 159
17850245 GTAACCCTCT
***** **
17850255 GTATGCCTAAGTCAACCCACGAAATGAGCGTGGGAGCGCTCAGTCGGCCAGAGGGGCGGGATGTG
1 GTATGCCTAAGTCAACCCACGAAATGAGAACACGAGCGCTCAGTCGGCCAGAGGGGCGGGATGCA
* * * *
17850320 CAAGCCGAGGATCGATCGGGTCCCCCTCTGGGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCC
66 CAAGCAGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCAGTCC
17850385 GATCTGATCCTAGACTT-GGAATGAACTCC
131 GATCTGATCCTAGA-TTGGGAATGAACTCC
* *
17850414 GTATGCCTAAGTCAACCCACAAAATGAGAACACGAGCGCTCAGTCGGCCAGAGGGTCGGGATGCA
1 GTATGCCTAAGTCAACCCACGAAATGAGAACACGAGCGCTCAGTCGGCCAGAGGGGCGGGATGCA
* * * *
17850479 TAAGTCAG-GGATCGACCGGGTCCCCCTCTGCGTGCTGCC-ATTCCTGCTGTCGTAACCCTTAGT
66 CAAG-CAGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGA-TCCTGCTATCGCAACCCTCAGT
* * * *
17850542 CTGGTCTGATCTTAGATTGGGAATGAACTTC
129 CCGATCTGATCCTAGATTGGGAATGAACTCC
* *
17850573 GTATGCCTAAGCCAACCGACGAAATGAG
1 GTATGCCTAAGTCAACCCACGAAATGAG
17850601 CGGGCAGGCA
Statistics
Matches: 160, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
158 3 0.02
159 155 0.97
160 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.21
Consensus pattern (159 bp):
GTATGCCTAAGTCAACCCACGAAATGAGAACACGAGCGCTCAGTCGGCCAGAGGGGCGGGATGCA
CAAGCAGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCAGTCC
GATCTGATCCTAGATTGGGAATGAACTCC
Found at i:17851291 original size:26 final size:26
Alignment explanation
Indices: 17851262--17851314 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17851252 CCAATCCGAT
17851262 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17851288 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17851314 C
1 C
17851315 CTAAGTGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17851962 original size:13 final size:13
Alignment explanation
Indices: 17851944--17851969 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17851934 GAATTCTTGA
17851944 GGTTTGATGAGGG
1 GGTTTGATGAGGG
17851957 GGTTTGATGAGGG
1 GGTTTGATGAGGG
17851970 ATAGGGGGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.54, T:0.31
Consensus pattern (13 bp):
GGTTTGATGAGGG
Found at i:17852210 original size:26 final size:26
Alignment explanation
Indices: 17852181--17852233 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17852171 CCGGTCTGAT
17852181 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17852207 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17852233 C
1 C
17852234 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17853113 original size:26 final size:26
Alignment explanation
Indices: 17853084--17853136 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17853074 CTAGTCCGAT
17853084 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17853110 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17853136 C
1 C
17853137 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17853658 original size:901 final size:900
Alignment explanation
Indices: 17850395--17862082 Score: 14396
Period size: 903 Copynumber: 13.1 Consensus size: 900
17850385 GATCTGATCC
* * * **** *
17850395 TAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGAACACGAGCGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* ** *
17850460 GCCAGAGGGTCGGGATGCATAAGTC-AGGGATCGACCGGGTCCCCCTCTGCGTGCTGCC-ATTCC
66 GCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCG-CCGGGTCCCCCTCTGCGTGCTGCCGA-TCC
* * ** * * *
17850523 TGCTGTCGTAACCCTTAGTCTGGTCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAA
128 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
17850588 CCGACGAAATGAGCGGGCAGGCAGGCGGGTGGGCACTACGTCAGCCAGAGAGACGGGATACGCAA
193 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
17850653 GCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC-ATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
17850717 TTTTTGTGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
17850782 GACTCGTTTTCTATTATCCATGATTTTTTAAACTTTTGT--GGTTCGTGATTTTTTAAAATTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT-TACGGTTCGAGATTTTTTAAAATTTTT
* * * * * * *
17850845 TCGGAAGCAATTTTGGCCCCAAACTTGGTAGACATGATCCCTGTATTTTTTTTGTCTTGCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
17850910 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-------GTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
17850968 CAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
17851033 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** *
17851098 TCATTTGCGCACATCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTT
711 TCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
17851163 CAGTGATGCTCCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
774 CGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * **
17851228 ACATGTGCTGCTGCCACCCACGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
839 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
17851290 TAGACTGGGAATTAACTCCGTATGCCTAAGTGAAGCCACGAAACGAGCGTGCGGGTGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * ** * * * *
17851355 GCCAGAGGGGCAGGATGCGCATGCTGAGGATCAGCTAGGTACCCCTCTGCTTACTGTCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
** * * * * * * * * *
17851420 CTGTTGTAACCCTTGATTCGGTCGGATCATAGACTGGGAATGAACTCTGTATGCCTAAGCAAACA
130 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
17851485 GACGAAACGAGCGGGCGGACGGGTGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGC
195 GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
17851550 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATTCCAATGCCA-T
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
*
17851614 TTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * *
17851679 CTCGTTTTCTATTTTTCACGATTTTCAAAACATTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
390 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
** * *
17851744 GAAGGAGTTTTGGTACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTAGGCATGCACAATAAA
455 GAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
17851809 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
17851874 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAATT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
17851939 CTTGAGGTTTGATGAGGGGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
649 C--------T--CGA---GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
17852004 CCATCGCACATCATGTGCGGACACCCCCCTCTCGGCCCCCTCGATCGCCGAAACCCCAATGCCGC
701 CCATCGCACATCATGTGC-G-CACACCCC-C-CGGCCCCC-CGATCGTCGGAACCCCAATGCCGC
* * * * *
17852069 CGGTCAGGTTCTCCGGCGATGCTCCGACGACGGTGCCCCAAGGAAGAAAAATGCAGCACCAGCAC
761 CGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * *
17852134 ATGCCCGAGCCCAGCATTTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAAC
826 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
17852199 TCCGTATGCT
891 TCCGTATGCT
* * * *
17852209 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGACGCTCAATCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * * * * *
17852274 GCCAGAGAGGCGGGATGCGCAAGTCGGGGACCGGCCGGGTGCCCCTCTGCGTGCTACCAAAT-TT
66 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-GCCGGGTCCCCCTCTGCGTGCTGCC-GATCCT
* * *
17852338 GCTACCGCAACCGTCGGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAA
129 GCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
17852402 CCGACGAAATGAGCGTGCGGCGGGCGGGC-GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
193 CCGACGAAACGAGC--G-GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * * *
17852466 CAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTAGGCACGTCTTCATATTTCTGCATGCGAATG
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* *
17852531 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGCAA
320 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * * *
17852596 GACAACCCGTTTTGTATTTTCCATGATTTTTGAAACTTTTTGCTGTTCGAGATTTTTTATAATTT
385 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * *
17852661 TTTTGGAAGGATTTTTGGCCCTAAACTAT-TAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
450 TTTCGGAAGGAGTTTTGGCCCCAAACT-TGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
17852725 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
514 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
17852790 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGT
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
17852855 GAGTTCTCAAGCTTTGATGAGGGATAGGGGGCTAATATAAGAGCCAAGTACCAGCACCCATCGCA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * * *
17852920 CATCATGTACGCACACCCCCTGGCCCCCTGATCGTCGTAAGCCAAATGCCACCGGTCAGGTTCTC
709 CATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
17852985 TGGCGATGCTCCAATGATGGTGCCCCGATGAAGAAAAATGTGGCACCATCACATGCCCGAGCCCA
774 CGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * **
17853050 GCATGTGCTGTCACAACCCGT-GTTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
839 GCATGTGCTGCCGCAACCC-TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* **
17853112 TAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGAAGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * ** * * *
17853177 GCCAGAGAGGCGGGATGCGCAAGCCGAGGTTTGGTGGGATCCCCCTCTACATGCTGCCGATTCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGCCGGG-TCCCCCTCTGCGTGCTGCCGATCCTG
* * *
17853242 CTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCAACC
130 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * ** * *
17853307 GACGAAACGAGCGTGCGGGCGAGCGGGCAAGCACTACACCGGCCAGAGAGACGGTATGCGCAAGC
195 GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * * * *
17853372 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTTTGCGTGCCAATACCGTT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* *
17853437 TTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** ** * * *
17853502 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGATTCGGGATTTTTTAAAATTTTTTTG
390 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * * *
17853567 GAAGGAGTTTTGGCCCCAAACTAT-TAGACATGATCCCTGTATTTTTATTGGCATGCATAAAAAA
455 GAAGGAGTTTTGGCCCCAAACT-TGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
17853631 ATTCAGCTAAAAAGTCGAAAG-GTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCA
519 ATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
17853695 AACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
17853760 TCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
17853825 CTGTGCGCACACCCCCCGACCCCCCCGGTCGTCGAAACCCCAATGTCGTCGGTCAGGTTCT-C--
713 ATGTGCGCACACCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * **
17853887 CGA-----C---GA---TGCTCCGACGAAGAAAAATACAACACCAGCACATGCCCGAGCCCAGCA
777 CGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
17853941 TGTGCTGTCGTAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
842 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * * *
17854000 TAGACTGGGAATGAACTCTGTACGCCTAAGTCAAACAACGAAACAAGCTTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * *
17854065 ACCAGAAGGGAGGGATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCATG
66 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCG-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * * ** * *
17854130 CTGCAGCAACTCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACT
130 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
*
17854195 GACGAAACGA-C--GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
195 GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
17854257 CATGGATCGATAGTGTGGTAGGTGGGCTT-GCGCATATCTTCATATTTCTACGTGCCAATGCCAT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAG-GCACATCTTCATATTTCTACATGCCAATGCCAT
* *
17854321 TTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTC-CATGAAGTTTCATGGCAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-
* * *
17854385 GACTCGTTTTCTATTTTTCGTGATTTCTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * *
17854450 TGGTAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17854515 AAATTCAGCTAAACACTTC-AAGTGTACAAGATCTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
17854579 TAGACGCTTTAATGGCTATTGGCAGCAAACTTGTAAAACCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** * *
17854644 GTTCTTAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
17854709 TCATGTGTGCACACCCCCTCGGCCCCCTCGATCGTCGGAACACCAATGCCGCAGGTCAGGTTCTC
711 TCATGTGCGCACACCCCC-CGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
17854774 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCA
774 CGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
** * *
17854839 GCATGTGCAACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAGCTCCGTATGCT
839 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * **
17854901 TATACTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAACGAGCGTGCGGGCGCTCAACCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * * * * ** * *
17854966 GCTAGAGGGACAGGATGCGTAAGCCGGGGATCACCCGGGTCCCCTTCTATGTGCTACTGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * * * * *
17855031 CTACCGTAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCG-ATGGCTAAGCTAATC
130 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * *
17855095 GACGAAAGGAGCGGGCGGGTGGGCAGGCAGGCACAACGCTGACCAGAGAGACGGGATGCACAAGC
195 GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
** **
17855160 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGATATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * *
17855225 TTTTTGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
17855290 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAA-TTTTTCG
390 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* *
17855354 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * **
17855419 ATTCAGCTGAAAACTCGAAGT-TCACAAGATGTTCCGACCATTTGAAAAAAGTGTCCCCATTTCA
519 ATTCAGCTAAAAACTCGAAGTGT-ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
17855483 GACACTTTAATGGCTACTGGCAACAAAACTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGC
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
17855548 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATTGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
17855613 ATGTGCGCACACCCCCCGGCCCCCCGATCG-CTGGAACCCAAATGCCACCGGTCAGG-T-T----
713 ATGTGCGCACACCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * *
17855671 C--T--T-CGATGA---TGCTCCGACGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCTAGCA
777 CGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
17855728 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
842 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
17855787 TAGGCTGGGAATGAACTCCGTATGCCTACGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTAG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * * * * *
17855852 GCCAGAGGAGCGGGATGCGCAAGCCG-GGTTTCGACCGAGCCCCCCTTTTCATGCTGCCCATCCT
66 GCCAGAGGGGCGGGATGCGCAAGCCGAGG-ATCG-CCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * * * *
17855916 GTTGCTGCAACCTTCAGTCCGGTCTAATCTTAGACTGGCAATGAACTCCATATGCCTAA-CCAAC
129 GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
17855980 CGACGAAATGAGCGGGCTGGTGGGCGGGCGGGCACTACGTCGACCAAAGAGACGGGATGCGCATG
194 CGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
17856045 TCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* * * *
17856110 TTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTACATGGCAAGGCG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** * * *
17856175 CCTCGTTTTCCATTTTTCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTTTTTT
389 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTT
* * * *
17856240 C-GAAGGAGTTTTAGCCCCAAAC-T-T-G--GTAGATCCTTGTATTTTTATTGGCATGCAGAAAC
453 CGGAAGGAGTTTTGGCCCCAAACTTGTAGACGT-GATCCTTGTATTTTTGTTGGCATGCACAAAA
17856299 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * **
17856364 AAACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCATGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
17856429 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
17856494 CCTGTGCGCACAACCCCCGGCCCCCCCAATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCG
712 CATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * * * * *
17856559 GCGATGCTTTGGTGATAGTGTCCCGACGAAGAAAAATGCAGCACAAGCACATGCCCGAGCCTAGC
776 GCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
17856624 ATGTGCTGCCGCAACCCTCGGTCCAGACTGATCTTAGACTGGGAATGAACTCTGTATGCT
841 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * ** * *
17856684 TAGATTGGGAATAAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCATTGAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * * *
17856749 GTCAGAGGGGCGGGATGTGCAAGTCGAGGATCGGTCGGGTCCCCCTCTGTGTACTGCCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
** * **
17856814 CTGCCGCAACCCTCAATCTGGT-TCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAAC
130 CTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
17856878 TGACGAAACGAGTGAGCGGGTGGGCGGGTGGGCACTACGCCGACCAAAGAGACGGGATGCGTAAG
194 CGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
17856943 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
** * * *
17857008 TTTTATCTCTTGTAAATTTAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** *
17857073 ACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTATTTC
389 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * * * * *
17857138 GGAACGATTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGCATTCACAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
17857203 AATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCG
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
17857268 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
17857333 TCTTGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** *
17857398 ATGTGCGCACACCCGCCGGGCCCCCTAATC-TCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCG
713 ATGTGCGCACACCC-CCCGGCCCCCCGATCGT-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* *** * * * *
17857462 GCGATGCTCTGGCAATGGTGCCCCGACGAAGAAAAATGCAGCAGCAACACATGCCCAAGCCCAGC
776 GCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
17857527 ATGTGCTGCCGTAATCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCT
841 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
17857587 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGTGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * *
17857652 GCCAGAGGGGCGGGATGCGCAAGCC-AGTGATCGATCGGGTCCCCCTCTGCGTGTTACCGATCCT
66 GCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCG-CCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * *
17857716 GTTGCCGTAACCCTTGG-CTCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
129 GCTGCCGCAACCCTCGGTC-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
17857780 CCGATGAAACAAGCGGGCGGGAGGGCGGGCGAGCACTACATCGGCCAGAGAGACGGGATGCGCAA
193 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* ** * *
17857845 GCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGGATGCCAAGGCCT
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
17857910 TTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGATTCATGGCAAGAT
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17857975 AACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTATGGTTC-AGGATTTTTTAAAATTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTT
* ** * * *
17858039 TCGGAAGGGGTTTTGGCCAGAAACTTTTTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAAC-TTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
17858104 ACAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGATCATTTGAAGAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
** * * * *
17858169 GTGACACTTTAATGGCTACTGGCTGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGATGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* ** * * *
17858234 TTTCTCGAGGTTTGATGAGGGATAGGATGCCAAGATAAGGGCCAAGTACTAGCACCCATCACACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
17858299 TCATGTGCACACACCCCCCGACCCCCCAATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCG
711 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * *
17858364 GTGATACTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGT
776 GCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * ** *
17858429 ATGTGCTGTCGTAACCCTCGATCTGGTCCGATCTTAGACCAGGAATGAACTTCGTATGCT
841 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
17858489 TAGATTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * * * *
17858554 GCCATAGGGGTGAGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTACGTGCTACCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * *
17858619 CTACCGTAACCCTCGATCTGGT-TCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAAC
130 CTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
17858682 CGACG-AA--A---------CGTGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGACGCGCAAG
194 CGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
17858735 CCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* *
17858800 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGATG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* **
17858865 ACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
17858930 GGAAGGAGTTTTAGCCCCAAACTTGGTAGACATCATCCTTGTATTTTTGTTGGCATGCACAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
17858995 AATTCAGCCAAAAAACTC-AGAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTT
518 AATTCAG-CTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * * *
17859059 CCGATAGTTCAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTTAA-GGGGTGTG
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTG
* * *
17859123 AGTTCTC-ACAGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCA
645 AGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
17859187 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCT
709 CATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
17859252 CCGGCGTTGCTCCGATGATGGTGCCCC-AGCGAAGAAAAAGGCGGCACCAGCACATGCCTGACCC
773 CCGGCGATGCTCCGATGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
**
17859316 CAGCATGTGCTGGTGCAA----C---CC--T-CGATC-----C-----A-G---TCCG-AT-CT
837 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * **
17859354 TAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCAGGAAACGAGCGTGGGGGCGCTCAACCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * **
17859419 GCCAGAGGGGCGGGCTACAG-AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCATATCCT
66 GCCAGAGGGGCGGGATGC-GCAAGCCGAGGATC-GCCGGGTCCCCCTCTGCGTGCTGCCGATCCT
** * * *
17859483 GCTATCGTAACCCTCGGTCCGATCCGATCTTAG-CTGGGAATGAACTCCGTATGCCTAAGCCAAC
129 GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
17859547 GGAC-AAA--A-CGAGCGGGCGGGCGGGCGGGCATTACGTCGGCTAGAGAGACGGGATGTGCAAG
194 CGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
17859608 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
17859673 TTTTATGGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** * * *
17859738 ACTCATTTTCTATTTTTCATGATTTTAAAAACATTTTACGGTTCGGGATTTTTTGAAATTTTTTC
389 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
17859803 GGAAGGAGTTTT-GCCCTC-AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
454 GGAAGGAGTTTTGGCCC-CAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17859866 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTCAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
17859931 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
17859996 TTCTCGAGGTTCGATGAGGGCTAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATTGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** *
17860061 CATGTGCGCACACCCCCCCGGGCACCCCGATCGTCGGAACCCCAATGCCGTGGGTCAGGTTCTCT
712 CATGTGCGCACA-CCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
17860126 GGC-A-------AT--T-GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
775 GGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * *
17860180 CATGTGCTATCGCAACCCTCGGTCCAGTCC-ACTCTTAGACTGGGAATGAACTCTGTATGCT
840 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * *
17860241 TAGACTAGGATTGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGAGCACTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * * * *
17860306 GCCAGAGGGGCGGGATGCACAAGCCGGGGATTGGCCGGGTACCCCTCTGCATGCTGTCGATCCTA
66 GCCAGAGGGGCGGGATGCGCAAGCCGAGGA-TCGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* ** * * ** **
17860371 CTACCGCAACGATCAGTCCAGTCCAATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACC
130 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * * * *
17860436 GACGAAA--A--GAGTTGGCGGGCGGGCGGGCACTACCCCGACGAGGGAGACGGGATGCGCAAGC
195 GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
17860497 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCATCATATTTCTGCATGCCAATGCCAAT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* *
17860562 TTTATGGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** *
17860627 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGGTTTGAGATTTTTTAAAATTTTTTCG
390 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * * *
17860692 GAAGGAATTTTGGCCCCAAACTTGGTAGACGTGCTCATTGTATTTTTTTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * **
17860757 ATTCAGCTAAAAACTCAAACTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTGG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
17860822 AGACATTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
17860887 CTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCCTCGCACATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * ** *
17860952 TATGCGCACACCCCCCGGCCCCCCGATCG-CTGAAACCCTAATGCCACCGATCAGGTTCTTTGGT
714 TGTGCGCACACCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * * * ** * *
17861016 TATGCTCCGGTGATGGTGTCTCGGTGAAGAAAAATGCGGCACCAGCTCATGCCCAAGCCCAGCAT
778 GATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* ** * * *
17861081 GTGCTGCTGCAACCCTCAATCCGGTCCAATCTTAGACTGAGATTGAACTCCGTATGCT
843 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
17861139 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * * * ** *
17861204 GTCGGAGGGGCGGGATGTGCAAGCTGGGGATCGACCAGGTCCCCCTCTATGTGCTGGCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCG-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * *
17861269 CTGCCGCAACCCTCGGTCCGGTCCGATCTTACA-TTGGAATGAACTCCGTATGCCTAGGCCAACC
130 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
17861333 GAC-AAA--A-CGAGCGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGC
195 GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
17861394 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * *** * * *
17861459 TTTATGGCTTGAAAATTCATACAATGGTCCCGTAAGCAAGCCCATGAAGTTTCATGGCAAGTCGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * * *
17861524 CTTGTTTTCTATTTTTGACGATTTTCGAAACTTTTTGCGGTTTGAGATTGTTTAAAATTTTTTCG
390 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * * * *
17861589 AAAGGAGGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAACA
455 GAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
17861654 ATTCAGCTAAAAACTCGAAGTGTACAAGGTTTTTTGACCATTTGAAAAAA-TGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
17861718 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGAGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
17861783 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGTACATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * **
17861848 TGAGCGCACATCCCCCCCGACCCCCC---CGATC-G--CCCCAATGCTGCTGGTTGGGTTCT-C-
714 TGTGCGCACA--CCCCCCGGCCCCCCGATCG-TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
17861905 -CG--G---CGAT-A--GTGCCCCGACGAAGAAAAATGTGGCACCAGCAAATGCGCGAGCCCAGC
776 GCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* ** *
17861961 ATGTGCTGCCCCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
841 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
17862021 TAGACTGGGAATGAACACCGTATGCCTAAGTCAGCCCACAAAATGAGCGTGCAGGCGCTCAG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
17862083 CTGGAGAGAT
Statistics
Matches: 9346, Mismatches: 1243, Indels: 421
0.85 0.11 0.04
Matches are distributed among these distances:
861 54 0.01
862 2 0.00
864 4 0.00
865 173 0.02
866 3 0.00
867 3 0.00
868 2 0.00
870 8 0.00
871 176 0.02
872 103 0.01
873 238 0.03
876 2 0.00
881 8 0.00
882 375 0.04
883 32 0.00
884 26 0.00
885 230 0.02
886 687 0.07
887 241 0.03
888 549 0.06
889 527 0.06
890 175 0.02
891 111 0.01
892 1 0.00
893 18 0.00
894 6 0.00
895 355 0.04
896 273 0.03
897 615 0.07
898 485 0.05
899 7 0.00
900 57 0.01
901 742 0.08
902 580 0.06
903 1573 0.17
904 38 0.00
905 1 0.00
906 7 0.00
907 1 0.00
908 61 0.01
911 2 0.00
913 2 0.00
916 63 0.01
917 5 0.00
918 9 0.00
919 310 0.03
920 2 0.00
921 259 0.03
922 144 0.02
923 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
TGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
GCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
Found at i:17854003 original size:26 final size:26
Alignment explanation
Indices: 17853974--17854027 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
17853964 AGTCCGATCT
*
17853974 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTACGCC
*
17854000 TAGACTGGGAATGAACTCTGTACGCC
1 TAGACTGGGAATGAACTCCGTACGCC
17854026 TA
1 TA
17854028 AGTCAAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTACGCC
Found at i:17854902 original size:26 final size:26
Alignment explanation
Indices: 17854873--17854925 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17854863 CTGGTCCGAT
*
17854873 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17854899 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17854925 C
1 C
17854926 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17855788 original size:26 final size:26
Alignment explanation
Indices: 17855759--17855811 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17855749 CTGGTCCGAT
17855759 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17855785 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17855811 C
1 C
17855812 CTACGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17856692 original size:26 final size:26
Alignment explanation
Indices: 17856656--17856708 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17856646 CCAGACTGAT
*
17856656 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
*
17856682 CTTAGATTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
17856708 C
1 C
17856709 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:17857595 original size:26 final size:26
Alignment explanation
Indices: 17857559--17857611 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17857549 CCGGTCCGAT
*
17857559 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17857585 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17857611 C
1 C
17857612 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17860255 original size:26 final size:26
Alignment explanation
Indices: 17860213--17860265 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17860203 CCAGTCCACT
* *
17860213 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17860239 CTTAGACTAGGATTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17860265 C
1 C
17860266 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17861140 original size:26 final size:26
Alignment explanation
Indices: 17861111--17861163 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17861101 CCGGTCCAAT
*
17861111 CTTAGACTGAGATTGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17861137 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17861163 C
1 C
17861164 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17862022 original size:26 final size:26
Alignment explanation
Indices: 17861993--17862045 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17861983 CCGGTCTGAT
*
17861993 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
17862019 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
17862045 C
1 C
17862046 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:17862745 original size:724 final size:712
Alignment explanation
Indices: 17861374--17862807 Score: 2076
Period size: 724 Copynumber: 2.0 Consensus size: 712
17861364 ATGCCGGCCA
*
17861374 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAGGCACATCTTCATAT
*
17861439 TTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCGTAAGCAAGCCCAT
66 TTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCGTAAGCAAGCACAT
* * ** * *
17861504 GAAGTTTCATGGCAAGTCGACTTGTTTTCTATTTTTGACGATTTTCGAAACTTTTTGCGGTTTGA
131 GAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGA
*
17861569 GATTGTTTAAAATTTTTTCGAAAGGAGGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
196 GATTGTTTAAAATTTTTTCGAAAGGAGGTTTGACCCCAAACTTGGTAGACATGATCCTTGTATTT
* *
17861634 TTGTTGACATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGGTTTTTTGACCATTTGA
261 TTGTTGACATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
17861699 AAAAATGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTGAAATGCT
326 AAAAATGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCT
*
17861764 CTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAT
391 CTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
17861829 CAGCACCCATCGTACATCATGAGCGCACATCCCCCCCGACCCCCCCGATCGCCCCAATGCTGCTG
456 CAGCACCCATAGCACATCATGAGCGCACATCCCCCCCGACCCCCCCGATCGCCCCAATGCTGCAG
* * * *
17861894 GTTGGGTTCTCCGGCGATAGTGCCCCGACGAAGAAAAATGTGGCACCAGCAAATGCGCGAGCCCA
521 GTTGGATGCTCCGGCGATAGTGCCCCGACGAAGAAAAATGTGGCACCAGCAAATACCCGAGCCCA
*
17861959 GCATGTGCTGCCCCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
586 GCATGTGCTGCCCCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * *
17862024 ACTGGGAATGAACACCGTATGCCTAAGTCAGCCCACAAAATGAGCGTGCAGGCGCTCAGCTG
651 ACTGGGAATCAACACCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCTG
*
17862086 GAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAGGCACATCTTCATAT
1 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAGGCACATCTTCATAT
*** * * *** *
17862151 TTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCGTAAGCAAGCACAT
* *
17862216 GAAGTTTCACGGC-AGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGA
131 GAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGA
* * **
17862280 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGACCCCAAACTTGGTAGATGTGATCCTTGTA-TT
196 GATTGTTTAAAATTTTTTCGAAAGGAGGTTTGACCCCAAACTTGGTAGACATGATCCTTGTATTT
* *
17862344 TTG-TGGCTTGCACAAAA-ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
261 TTGTTGACATGCACAAAACA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
17862407 AAAAAAGTGTCCCCATTTCAGACA-TTTAATGGCTACT-GGAGGAAACCTGTAAAATCTCAAATG
325 AAAAAA-TGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATG
* * *
17862470 CTCTTTAAGGGGGTGTGAGTTCT-TATGGTTTGATGAGGGATA-GTGGCCAATATAAGGGCCAAG
389 CTCTTTAAGGGAGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * *
17862533 TACCAGCACCCATAGCACATCATGTGCGCACA-CCCCCGTCGCCCCCCCCGATCATCGGAACCCC
453 TACCAGCACCCATAGCACATCATGAGCGCACATCCCCC-CCGACCCCCCCG---ATC-G--CCCC
* * *
17862597 AATGCCATCGGTCAGGTTCTCTGACGATGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATGTGGC
511 AATG-C-T--G-CAGG---T-TG--GATGCTCCGGCGATAGTGCCCCGACGAAGAAAAATGTGGC
* * **
17862662 ACCAGCACATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
565 ACCAGCAAATACCCGAGCCCAGCATGTGCTGCCCCAACCCTCAATCCGGTCTGATCTTAGACTGG
* *
17862727 GAATGAACTCCATATGCTTAGACTGGGAATCAACTCCTTATGCCTAAGTCAACCCACAAAACGAG
630 GAATGAACTCCATATGCTTAGACTGGGAATCAACACCGTATGCCTAAGTCAACCCACAAAACGAG
*
17862792 CGTGCGGGCGCTCAGC
695 CGTGCAGGCGCTCAGC
17862808 CAGCCGGAGG
Statistics
Matches: 641, Mismatches: 60, Indels: 30
0.88 0.08 0.04
Matches are distributed among these distances:
706 5 0.01
707 59 0.09
708 62 0.10
709 73 0.11
710 25 0.04
711 102 0.16
712 130 0.20
713 8 0.01
714 1 0.00
715 1 0.00
717 1 0.00
718 3 0.00
721 1 0.00
722 2 0.00
724 168 0.26
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (712 bp):
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAGGCACATCTTCATAT
TTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCGTAAGCAAGCACAT
GAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGA
GATTGTTTAAAATTTTTTCGAAAGGAGGTTTGACCCCAAACTTGGTAGACATGATCCTTGTATTT
TTGTTGACATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAATGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATAGCACATCATGAGCGCACATCCCCCCCGACCCCCCCGATCGCCCCAATGCTGCAG
GTTGGATGCTCCGGCGATAGTGCCCCGACGAAGAAAAATGTGGCACCAGCAAATACCCGAGCCCA
GCATGTGCTGCCCCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
ACTGGGAATCAACACCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCTG
Found at i:17862753 original size:26 final size:26
Alignment explanation
Indices: 17862717--17862769 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17862707 CCGGTCTGAT
*
17862717 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
17862743 CTTAGACTGGGAATCAACTCCTTATG
1 CTTAGACTGGGAATCAACTCCATATG
17862769 C
1 C
17862770 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:17863665 original size:26 final size:26
Alignment explanation
Indices: 17863614--17863665 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17863604 CTGGTCCGAT
* *
17863614 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
*
17863640 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
17863666 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:17867021 original size:26 final size:26
Alignment explanation
Indices: 17866985--17867037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17866975 CTGATCTGAT
*
17866985 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
17867011 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
17867037 C
1 C
17867038 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:17867427 original size:896 final size:890
Alignment explanation
Indices: 17864728--17868629 Score: 4974
Period size: 895 Copynumber: 4.4 Consensus size: 890
17864718 NNNNNNNNNN
* * * * *
17864728 GACGACTCGTTTTCTATTTTTCATGATTTTCGAAAGTTTTTGCGGTTCGGGATTTTTTTAAAATT
1 GACGACTCATTTTCTATTTTTCACGATTTT-GAAACTTTTTGAGGTTCGAGA-TTTTTTAAAATT
* *
17864793 TTTTCGGATGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCA-
64 TTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
17864857 AAAAAAATTCAGCCAAAAACTCGAAGTCTACAATATTTTGTGACCGTTTGAAAAAAGTGTCCCCA
129 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
17864922 TTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
194 TTTCAGACACTTTAAT-GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
17864987 TGAGTTCTCGAGATTTGATAAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
258 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
17865052 ACATCATGTGCGCACACCCCTCTCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
323 ACATCATGTGCGCACACCCC-CT-GGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGATCAGGT
* * **
17865117 TCTCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCA-C---CA------GG-
385 TCTCCGACAATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGACATGCCCGGGC
* * * * * *
17865171 --A-CA--TGCTGCCGTAACCCTCGGTCCGGTCCGATCTTGGACTGGGAATGAACTCCGTATGCT
450 CCAGCATGTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCT
* * * *
17865231 TAGACTGGGAATGGACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGTGGGCGCTCAGCCG
515 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCG
* * * ** * * * *
17865296 GCCAGAGGGGTGGGATGCGCAAGCC-GCGATCGGTAGGGTGCCCCTCTATGTGCTCCCGATCCTA
580 GCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTG
* * * *
17865360 CTACCATAACCCTCAGTCTGGTCCGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACC
645 CTACCACAACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACC
* *
17865425 GAC-AAATGAGCGGGC----GGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGCCGTTGGAA
710 GACGAAATGAGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG-TGG-A
17865485 TCGATAGGGTGGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTGCATGCCAATGCCATTTTTA
773 TCGATAGGGT-GGTAGGTGGGTTTAGGCACATCTTCATA--TTTTGCATGCCAATGCCATTTTTA
* *
17865550 TGGC-TGTAAATTAAAACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
835 TGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
17865605 -ATGACTCGTTTTTTCTTTTTCACGATTTTTGAAAC-TTTTGAGGTTC-AGGATTTTTT-AAATT
1 GACGACTCATTTTCTATTTTTCACGA-TTTTGAAACTTTTTGAGGTTCGA-GATTTTTTAAAATT
* *
17865666 TTTTCGGAAGGATTTTT-GCCCC-AATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCAC
64 TTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
17865729 -AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTGAAAAAAGTGTCCCC
129 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCC
*
17865793 ATTTTAGACAC-TTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGT
193 ATTTCAGACACTTTAA-TGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
17865856 GTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
257 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** * * *
17865920 CACATTCATGTGCGCACACCCCCTGGCACCCCGATTCACCGGAA-CCCTATG-CGTCGGTTCAGG
322 CACA-TCATGTGCGCACACCCCCTGGCCCCCCGA-TCGTCGGAACCCCAATGCCG-CCGATCAGG
* * * * * * *
17865983 TTCTCTGGCGAATTCTCCGGTGATTGGTGCCACGATGAAGAAAAATACGGCACCAGACAAGGCCC
384 TTCTCCGAC-AATGCTCCGGCGA-TGGTGCCCCGACGAAGAAAAATACGGCACCAGAC-ATGCCC
* * *
17866048 GAGGCCCAGCCATGTGCTACCGCAACCCTCGATCCGGGTTTGATCTTAGACTGGGAAAT-AACTC
446 G-GGCCCAG-CATGTGCTGCCGCAACCCTCGATCC-GATCTGATCTTAGACTGGG-AATGAACTC
* * *
17866112 CAT-TGCTTAGACTAGGAATGAACT-CGTA-GGCTAAGTCAACCCACGAAATGAGCGTGGCGGGC
507 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT-GCGGGC
* ** * *
17866174 GCTCAGTCGGCCCAGACGGGGCGAGATGCGCAAGTGAGGGATTGGTCGGGTCCCCCTCTACGTTG
571 GCTCAGCCGG-CCAGA-GGGGCGAGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTACG-TG
* * * * * *
17866239 CT-ACGATCCTGTTACCACAACCCCTCGA-CTTGTCTGATCTTAAACTGGGAATGAACTCC-TAT
633 CTGCCGATCCTGCTACCACAA-CCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
* * * **
17866301 GCCTAAGCCAACCAACGAAAAGAGCGGTGCGGGCGGGCACTACGTTGGCCAGAGAGGACGGGATG
697 GCCTAAGCCAACCGACGAAATGAGCGG-GCGGGTGGGCACTACGCCGGCCAGAGA-GACGGGATG
* * *
17866366 CCCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTTTGCATGCCAA
760 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTTGCATGCCAA
* *
17866431 TGCCATTTTTATGACTTGTAAATTCAAACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGC
824 TGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
17866496 AA
889 AA
* * *
17866498 GACGACTCCTTTTTTATTTTTCATGATTTTTGAAACTTTTTG-GGTTCGAGATTTTTTAAAA-TT
1 GACGACTCATTTTCTATTTTTCACGA-TTTTGAAACTTTTTGAGGTTCGAGATTTTTTAAAATTT
* * *
17866561 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTGTTGGCGTGCACA
65 TTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
17866625 AAAAAGTTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
130 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
17866690 TTCAGACACTTTAATACTTACTGGCAGCAAACCTGTAAAATCTCTAATGCTTTTTAAGGGGGTGT
195 TTCAGACACTTTAATGC-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
17866755 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCA
259 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
17866820 CATCATGTGCGCACACCCCCTGGCCCCCCCGATCG-CTGGAACCCCAATGCCGCCGATCAGGTTC
324 CATCATGTGCGCACACCCCCTGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGATCAGGTTC
* * * * *
17866884 TCTGACAATGCTCTGGCGATGGTGCCTCGACGAAGAAAAATGCCGCACCAGCACATGCCCGGGCC
387 TCCGACAATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAG-ACATGCCCGGGCC
* *
17866949 CAGCATGTGCTGCCGGAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCTT
451 CAGCATGTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTT
* * * *
17867014 AGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGTGCTCAACCGG
516 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGG
* * * ** * * ** *
17867079 CCAGAGGGGTGGGATGCGCAAACCAGAAATTGGCCGGGTCCCCTTCTACGTGCTGTTGATTCTGC
581 CCAGAGGGGCGAGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * *
17867144 TATCGCAACCCTCAATCTGGTCTGATCTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACTG
646 TACCACAACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
17867209 ACGAAATGAGCGGGCGGGTGGGCGAGCGAGCGCTACGCCGGCTAGAGAGACGAGATACGCATGCC
711 ACGAAATGAGCGGGCGGGT--G-G-GC-A---CTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
17867274 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTT-CGTGCCAATGCCATTTT
768 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTGCATGCCAATGCCATTTT
* *
17867337 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAA
833 TATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
17867395 GACGACTCATTTTCTATTTTTTAAGATTTTGAAAACTTTTTGCAGTTTAG-GATTTTTTAAAATT
1 GACGACTCATTTTCTATTTTTCACGATTTTG-AAACTTTTTG-AGGTTCGAGATTTTTTAAAATT
* * * *
17867459 TTTTTGGAAGGATTTTTCGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
64 TTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
17867524 AAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCA
129 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * * *
17867589 TTTCAGACACTTTAATGGCTACCGGCAGGAAACATGTAAAATCTCGAATGCTCCTTAAGGGTGTG
194 TTTCAGACACTTTAAT-GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
17867654 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTGCCGGCACCCATCGC
258 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
17867719 ACATCATGTGCACACACCCCCCCGGCCCCCCGATCGTCGGAACCTCAATGCTGCC-AGTCAGGTT
323 ACATCATGTGCGCACA-CCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGA-TCAGGTT
* * * ** * *
17867783 TTCCGACGATG-TCCGGTGATGGTGCCCCGGGGAAGAAAAATACGGCACCAGCACATGCCTGAGC
386 CTCCGACAATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAG-ACATGCCCGGGC
* * * * * * ***
17867847 CCAGCATGTACTGTCGCAACCTTCGGTCCAATCTGACCTTAGACTGGGAATGAACTTTGTATGCT
450 CCAGCATGTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCT
* * * * * *
17867912 TAGATTGGGAATGAAATCCGTATCCCTAAGTCAACCCACAAAATGAGCGTACGGCCGCTCCGCCG
515 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCG
** * *
17867977 GCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
580 GCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTG
* ** * * **
17868042 CTGCCACAACCCTCGGTCTGGTCTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGATAAAC
645 CTACCACAACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG-CCAAC
* ** * *
17868107 CGATGAAACAAGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCTTGGAT
709 CGACGAAATGAGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
**
17868172 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
774 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGCATGCCAATGCCATTTTTATGG
* * *
17868237 CTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGA
838 CTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
17868290 GACGACTCATTTTCTATTTTTTACGATTTTCAAAAATTTTTGAGGTTCGAGATTTTTTAAAATTT
1 GACGACTCATTTTCTATTTTTCACGATTTT-GAAACTTTTTGAGGTTCGAGATTTTTTAAAATTT
* * * *
17868355 TTTTGGAAGAATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACA
65 TTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
17868420 AAAAAATTTAGCTAAAAACACGGAGTGTCCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
130 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
17868485 TTCAGACACTTTAATGGCTACTGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTG
195 TTCAGACACTTTAAT-GCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
17868550 TGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
258 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
17868615 ACATCATGTGCGCAC
323 ACATCATGTGCGCAC
17868630 TACGCCGACC
Statistics
Matches: 2643, Mismatches: 290, Indels: 165
0.85 0.09 0.05
Matches are distributed among these distances:
866 2 0.00
867 23 0.01
868 24 0.01
869 66 0.02
870 48 0.02
871 123 0.05
872 34 0.01
873 22 0.01
874 7 0.00
875 12 0.00
876 25 0.01
877 4 0.00
881 2 0.00
884 1 0.00
886 27 0.01
887 18 0.01
888 42 0.02
889 56 0.02
890 72 0.03
891 11 0.00
892 111 0.04
893 182 0.07
894 151 0.06
895 370 0.14
896 300 0.11
897 176 0.07
898 84 0.03
899 307 0.12
900 321 0.12
901 22 0.01
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (890 bp):
GACGACTCATTTTCTATTTTTCACGATTTTGAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTT
TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCG
ACAATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGACATGCCCGGGCCCAGCA
TGTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCGAGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCA
CAACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ATGAGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTTGCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
Found at i:17867934 original size:26 final size:26
Alignment explanation
Indices: 17867884--17867934 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17867874 CCAATCTGAC
* **
17867884 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
17867910 CTTAGATTGGGAATGAAATCCGTAT
1 CTTAGACTGGGAATGAAATCCGTAT
17867935 CCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:17869300 original size:26 final size:26
Alignment explanation
Indices: 17869271--17869323 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17869261 CCGGTCCGAT
17869271 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17869297 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17869323 C
1 C
17869324 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17870920 original size:26 final size:26
Alignment explanation
Indices: 17870884--17870936 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17870874 CTGGTCCGAT
17870884 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17870910 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17870936 C
1 C
17870937 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17872710 original size:26 final size:26
Alignment explanation
Indices: 17872681--17872733 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17872671 TCGGTCCGAT
17872681 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17872707 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17872733 C
1 C
17872734 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17873610 original size:26 final size:26
Alignment explanation
Indices: 17873581--17873633 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17873571 CTGGTCCAAT
*
17873581 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17873607 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17873633 C
1 C
17873634 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17873877 original size:900 final size:902
Alignment explanation
Indices: 17870143--17884139 Score: 17771
Period size: 880 Copynumber: 15.8 Consensus size: 902
17870133 GCCCAACATG
* * *
17870143 TGCTG-CGACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACGCTGTATGCCTAAGCCA
1 TGCTGCCG-CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** ** * * *
17870207 ACCGACGAAAAAAATGGGCGGGCGGGTGGGCGGGCATTACGCCGACCAGAGAGACGGGATGCGCA
65 ACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
17870272 AGCCGTGGATCGATAAGGTGGTAGGAGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
17870337 ATTTTTATGGCTTGTAAATTTATACAATGGTCCTTTATGCCTTCACGTGATGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
17870402 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
17870467 TTGGAA-GATGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAA
324 TCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
17870531 AAAAATTCAGCTAAAAAATCG-AGTGTACAAGATTTTGTGACAATTCGAAAAAGGTGTCCCCATT
388 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
17870595 GCAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
17870659 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
17870724 ATCATGTGCG--CA--CCCCCTGCCCCCCGATCGTCGGAACTCCAATGCCGTCGGTCAGGTTCTC
583 ATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
17870785 CGATGATGCTCCGGCGATGGTACCCC-AGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCC
648 CGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
17870849 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
712 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
** * * * *
17870914 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACTAGCATGCGGGCGTTCAGTCGGC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* *
17870979 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTG-TCGATCC
842 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCT-GATCC
* * * * *
17871040 TGCTGCCACAACCCTCGGTCTGATCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** * *
17871105 TCGATGAAACAAGCAGGCAGGCGGACGGGCGGGTGGGAACTACATCGGCTAGAGAGACGGCATGC
66 CCGACGAAAC--G-A-GCGGGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
17871170 ACAAGCC-TGGATCGATAGAGTGGTAGGTGGGTTTTA-GCACATCTTCATATTTCTACATGCCAA
126 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
17871233 TGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
190 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
17871298 AAGACGACTCGTTTTCTATTTCTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAAT
255 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * *
17871363 TTTTTTGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATTCTTGTATTTTTGTTGGCATGCA
320 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
17871428 CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCC
385 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
17871493 ATTTCAGACAGTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGT
450 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
17871558 GTGAGTTTTTGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
515 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
17871623 CACATCATGTGCGCACA--------ACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
580 CACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * *
17871680 CT-C--CG--G-T-----GATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGG
645 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
17871734 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGATTGGGAATGAACTCTATACGCT
710 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCT
* * * * * *
17871799 TAGACTGGGAATGAACTCTGTAAGCCTAAGTCAACCCGCGAAACGAGCGTGCCGGCGCTCCGCTG
775 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * ** *
17871864 ACCAGAGGGGCGAGATGCGCAAGCCGGGGATTGGCCGGGTCCCCCTCTATGTGCTGCCGATCC
840 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * *
17871927 TACTGCTGCAACCCTC-AGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
17871991 ACCGACAAAATGA--GTG-GGCGGGCGGGCGGGCACTACGCTGGCTAGAGAGATGGGATACGCAA
65 ACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
17872053 GCCGTGGATCGATAGGGTGGTAGGTCGATTTAGGTACAACTTCATATTGCTGCCTGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
17872118 TTTTGATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17872183 GACTCATTTTCTGTTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAA-TTTT
260 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTT
* ** * *
17872247 TCGGAAGGAGTTTTGACCCTGAACTTGGTAGACGTGATCCTCGAATTTTTGTTGGCATGCACAAA
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
17872312 AAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17872377 CAGA-ACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGT
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
17872441 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
17872506 TCATGTGCGCACACACCCCCCCGGCCCCCCAATCGCTGGAACCCCAATGCCGTCGGTCAGGTT-T
584 TCATGTGCG--CACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
*
17872570 CCGATGATGCTCCAGCGATGGTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
647 CCGACGATGCT-C--C----G----GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * ** *
17872635 TGCTCGACCCCAGGTTGTGCTGCCGTAACCCTCGGT-TCGGTCCGATCTTAGACTGGGAATGAAC
701 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAAC
* *
17872699 TCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
765 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * *
17872764 CGCTCAGCCGGCCAGAGGGGCGGAATGTGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCT
830 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT
*
17872829 GCCGATCC
895 GCTGATCC
* * * * * *
17872837 TGCTACCGCAAACCTC-AGTCCGATCCCATCTTAGACTGGGAATGAACTCCATATGCCTAACCCA
1 TGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17872901 ACCGACAAAACGAGCGGGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACAGGAGGCGCA
65 ACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
17872966 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
17873031 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
17873096 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTCTTGTGGTTTGGGATTTTTTAAAA-TTTT
259 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
17873160 TCTGATGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAA
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
17873225 AAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
17873290 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * * *
17873355 GGTCTCAAGGTTTGATGAGGGATAGGTGGCCAATATAAGTGCCAAGTACCAGCAACCAT-GTACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
17873419 TCATGTGCGC-CACCCCCCCGGCCCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCC
584 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * *
17873483 GCCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCTCCAGCACATGTCTGAGCCTAG
649 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
17873548 CATGTGCTGCTGCAACCCTCTGTCTGGTCCAATCTTAGACTGGTAATGAACTCCATATGCTTAGA
714 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* *
17873613 CTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGTCGGCCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* ** * *
17873678 AAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTACTGCTGCTCC
844 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCC
* ** * *
17873737 TACTGCCATAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17873802 CCGACGAAACGAGCGGGCGGACGGGCGGGCAGGCACTGCGCCTGCCAAAGAGACGGGATGTGCAA
66 CCGACGAAACGAGCGGGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
17873867 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17873932 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
17873997 GACTCGGTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
17874062 CCGAAGGCA-TTTTGGCCCCAAACTTGGTAGACATGATCCTTGGATTTTTGTTGGCATGCACAAA
325 CGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
17874126 AAAATTCAGCTAAAAAATCGAAGTGGACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCTCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
17874191 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
17874256 GTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
17874321 TCATGTGCGCACA------C--CCCCCCGATCGCCAGAACCCAAATGCCGCCGGTCAGGTTCTCC
584 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
17874378 GACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGTCCAG
649 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
17874443 CATGTGCTACTGCAACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTCCATATGCTT-GA
714 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * **
17874507 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGTGCTCAGTAGGCCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * *
17874572 GAGGGGCGGGATGCGCAAGCCGGAGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
844 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCC
* ** * *
17874631 TGCTACCG--GTCC-C-A--C---CCTATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17874687 CCGACGAAACGAGTGGGCGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGATGGGATGCGGAA
66 CCGACGAAACGAGCGGGCG-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
17874752 GCCATGGATCGGTAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
17874817 TTTTCATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17874882 GACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGCCGTTCGGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
17874947 CGGAAGGAGTTTTGGCCCCAAAGTTGGCAGACCTGATCCCTT-TATTTTTGTTTGCATGCACAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAA
* *
17875011 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCAATT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
17875076 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
17875141 GTTCTCAAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
17875206 TGATGTGCGCACA---------CCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTTC
584 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * **
17875262 GGTGATGCTCCAGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
649 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
17875327 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
714 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * *
17875392 CTGGGAATGAACTCCGTATGCCTAAGTCAACACTCGAAACGAGCGTGCGGGCGCTCAGCCGTCCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* *
17875457 GAGGGGCGAGATGCGCAAGCCAGGGATCGGCCGGGT--CCC-C--C-T-CTGC--A---
844 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * *
17875504 TGCTGTCGCAACCCTCCG-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCT-CGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * ** *
17875568 ACCGATGCAACGAGC--G-GGCGGGCGGGCGGGTGCTACGTCGGCCAGATTGATGGGATGCGCAA
65 ACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
17875630 GCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
17875695 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACATGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** ** *
17875760 GACTCGTTTTCTATTTTCCACGATTTTCAAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* **
17875825 CAGAAGGAGTTTTGGTACCAAACTT-GTGAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
17875889 AAAATTCAGCTAAAAACTTGAAGTGTATAAGATTTTGTGAGCATTTGAAAGAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
17875954 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* **
17876019 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGATAAAGTACCAGCACCCATCGCAC
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CCAAGTACCAGCACCCATCGCAC
* * *
17876084 ATCATGTGCGCACACCCCTCCCGACCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCT
583 ATCATGTGCGCACACCCC-CCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
17876149 CCGACGATGCTCCGGCGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
647 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* ** *
17876214 AGAATGTGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
712 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
* * * *
17876279 GACTGGGAATGAATTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGTGGGCACTCAGCCGGC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
17876344 CAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
842 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * *
17876405 TACT------A--C-CGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
17876461 CCGACGAAACGA-----------GCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
66 CCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* ** *
17876515 CCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCCT
131 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
17876580 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACG
196 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
**
17876645 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AAATTTTTTTAAAATTTTTT
261 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTT
* *
17876709 CGGAAGGATTTTTGGCCCCAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
17876774 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTC
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
17876839 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGGTCTTTAAGGGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
17876904 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
17876969 CATGTGGGCACACCCCGCTGGCCCCCCCGATCGCCGGAAACCCAATGCCGCCGGTCAGGTTCTCC
585 CATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * ** *** *
17877034 GGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATTTTGCACCAGCACATGCCCGAGCCTAG
649 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
17877099 CATGTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGCAATGAACTCCGTATG-TTAGA
714 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * * * *
17877163 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAGTGCGGGCGCTTAGCCGACTA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
*
17877228 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCTCTCTGCGTGCTGCTGATCC
844 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * ** * *
17877287 TACTGTCGCAACCCTC-AGTCTGGTCCAATCTTAGACTACGAATGAACTCCGTATGCCCAAACCA
1 TGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17877351 ACCGACGAAATGA-------GCAGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGACGCGCAA
65 ACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
17877409 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTAATATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
17877474 TTTTTATGACTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGCGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** * *
17877539 GACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-AGATTTTTTAAAACTTTTT
260 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
17877603 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAGAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17877668 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTA
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
17877733 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
** *
17877798 TTCTCGAGGTTTGATGAGGGATAGGGTACCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
17877863 CATGTGGGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
585 CATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
17877928 GACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
649 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * ** ** * *
17877993 CATGTGCTGCCGTAACCCTCGGTCCGGTAAGATCTTAGACTATGAATGAACTCCGTATGTTTAGA
714 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * * *
17878058 CTGGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAGCCGGCCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * *
17878123 GAGGGACGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCGCTGTGTGCTG-TCATCC
844 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * *
17878181 TACT------A-CCT-G-TCCGGTTCGATCTTAGATTGGGAATGAACT-CGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
17878236 CCAACGAAACGAGTGGGCGGACGGGCGGGCAGGCACTACGCCTTCCAGAGAGACGGGATGTGCAA
66 CCGACGAAACGAGCGGGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* **
17878301 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGGGTGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17878366 TTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
17878431 GACTCGTTTTCTATGTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* ** *
17878496 CAGAAGGAGTTTTGGCAACAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17878561 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
17878626 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
17878691 TTCTCGAGGTTCGATGAGGGATAGGCGGCCACTATAAGGGCCAAGTACCAGCACCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
17878756 CATGTGTGCACACCCTGCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTC
585 CATGTGCGCACACCC-CCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * ** * * *
17878821 CGATGATGCTCCGACGATAGTGCCCC-AGGGAAGAAAAATATGGCACCAGCACATGGCCGGGGCC
648 CGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* **
17878885 AGCATGTGCTACAACAA-CC-C--TC--G---G-TC-----C---G---G---TCCA-AT-CTTA
712 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
* * * * * * *
17878924 GACTGGGAATGAACTCCGTATGCCTAAGTCACCCCACAAAATGAACGTGCGGCCACTCAGTCGGC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * ** * *
17878989 CAAAGGGACAGGATGCACAAGCCAGGGATC-AACGTGGTCCCCCTCTGTC-TACTG-TCGATCT
842 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCG-GGTCCCCCTCTG-CGTGCTGCT-GATCC
** * * * *
17879050 TGCTATCGTAACCCTC-AGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCAA
1 TGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17879114 ACCGACTAAACGAGC--G-GGCGGGCGGGCGGGCATTACGCCGACCAGAGAGACGGGATGCGCAA
65 ACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
17879176 GCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
17879241 TTTTTATGGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
17879306 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTCTT
260 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
17879371 CGAAAGG-GTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
17879435 AAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCTCCATTTC
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
17879500 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
** ** * * *
17879565 TTCTTAAGGTTTGATGAGGGATAGGGGGATAATATATGGGCTAGGTACCAGCACCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *** * ** *
17879630 CATGTGCGTACA-CCCCCCGACCCCATCGATAATCAGAACCCCAATATCGACGGTCAGG-T-T--
585 CATGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
17879690 --C--T--T-CGGTGATGGTGCCCCGACGAAGAAAAATACGGCACTAGCACATGCCCGAGCCCAG
649 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * **
17879748 CATGTGCTTCGGTAACCCTCGAT-TCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
714 CATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * *
17879812 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCCCTCAGCCGGCC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
17879877 AGAGGGGTGGGATGCGGAAGTCGAGGATCGGTCGGGTCCCCCTCTGCGTGCT-ATCGATCC
843 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCT-GATCC
* ** * * *
17879937 TGCTGCCGCAACCCTC-AGTCGGGTTTGATCTTAGACCGAGAATGAACTCCGTATGCTTAAGCCA
1 TGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
17880001 ACCGAC-AAA--A--------CGAGTGGGCGAGCACTACGCTGGCCAAAGAGATGGGATGCGAAA
65 ACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
17880055 GTCGTGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATACTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17880120 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17880185 GACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTATGATTCGGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
*
17880250 CGGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
17880315 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
17880380 AGAGACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
17880445 TTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** * *
17880510 CATGTGCGCACACCCCCCCGGCCTCCTCGATCACCGGAACCTTAATACCGTCGGTCAGG---T--
585 CATGTGCGCACACCCCCCCGGCC-CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
17880570 -----T-CT-C--C-A---------G-CGAAGAAAAATACGTCACCAGCACATGCCCGAGCCCAG
649 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
17880615 CATGTGCTGCCGCAACCCTTGGTTTGATCCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGA
714 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * * * * ** * *
17880680 CTGGGAATGAACTCTGTATGCTTAAGTCAACCCACAAAACGATCGTACAAGTGTTCAGCCGGCCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * *
17880745 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTACCGATCC
844 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * ** * *
17880804 TGCTGCCACAATCCTC-AGTCTAGTCTGATCCTAGA-TAGGGAATGAACTCCGTATGCCTAAGCC
1 TGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCC
* * * * * ** *
17880867 AATCGACGAAACAAGCGCGCAGGCGGGCGGGCGGGCATTACGTCGGCCAGAGAGACTAGATGCCC
64 AACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
17880932 AAGCTGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCGAATGC
128 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
17880997 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCGAG
193 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * * * *
17881062 ACGACTCGTTTTCTATTTTTCACAATTTTTTAAAACTTTTTGCCGTTCTGGATTTTTTAAAATTT
258 ACGACTCGTTTTCTATTTTTCATGA-TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* ** * *
17881127 TTTCGAAAGGAGTTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTTCTTGGCGTGCACA
322 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
17881192 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCAAT
387 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
17881257 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
452 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
17881322 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCA
517 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
17881387 CATCATGTGCGCACACCCCCTCGGCCCCATCGATCACCGGAACCCCAATACCGTCGGTCAGG-T-
582 CATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* *
17881450 T----C--T--T----C------G----G-CGAAGAAAAATGTGTCACCAGCACATGCCCGAGCC
646 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
17881492 TAGCATGTGCAGTCGCAACCATCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTT
711 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTT
* * * **
17881557 AGACTGGGAATAAACTCCATTTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTTGG
776 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* ** * * *
17881622 CAAGAGGGGTAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACCGATCC
841 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * *
17881684 TACTACCGTAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17881749 CTGAC-AAA--A--------TGAGCGGGCGGGCACTACGCCGCCCAAAGAGACGGGATGCGCAAG
66 CCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * * *
17881803 CCATGGATCAATAAGGTGGTAGCTGGGTTTAGGCACATCTTCATACTTCTACATGCCAATGCCAT
131 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
17881868 TTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
196 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** * *
17881933 ACTCATTTTTTATTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTC
261 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* *
17881998 GGAAGGAGTTTT-GACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
326 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
17882062 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCA
391 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
17882127 GAGACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
456 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
17882192 TTTTGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGAACCAGCACCCATCGCACATC
521 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
17882257 ATGCGCGCAAACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT---
586 ATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
17882319 -C----CT---ACGATGGTGCCCCGACGAAGAAAAATTCGACACCAGCAAATGCTCC-AGCCCAG
650 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC-CCGAGCCCAG
* * *
17882375 CATGTGCTGCTGCAA--C-C-ATC-AGTCCGA--TT---C-------G--------AT-CTTAGA
714 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * * * ** * * *
17882414 CTGGGAATGAACTCTGTATGCCTAAGTCGACCAACAAAATTAGCGTACGGGTGCTCAGCCAGCCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * * *
17882479 GAGGGGCGGGATGCGAAAGTCGAGGATCGGTCGGGTCCCCCTTTGAGTGCTGCCGATCC
844 GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCC
17882538 TGCTGCCGCAACCCTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACTCC-TATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17882601 ACCGACGAAACGAGCGGGCGGGTGGGC-GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCC
65 ACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
17882665 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
17882730 ATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
17882795 TGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTCTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
17882860 TCAGAAGGAGTTTTAGTCCCAAACTTCGTAGACGTGATCTTTGTATTTTTGTTGGCATGAACAAA
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
17882925 AAAATTCAGCTAAAAACTCAAAGTGTACCAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
17882990 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
17883055 GTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACTAGCACCGATCGAACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
17883120 TCATGTGCGCACA-CCCCCTGGCCCCCCGATCGTCGGAACCACAATGCCGCCAGTCAGGTTTTCC
584 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * **
17883184 GACGATACTCTGACGATGGTGCCCCGGCAAAGAAAAATGCGTTACCAGCACATGCCCGAGCCCAG
649 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * *
17883249 CATGTGCTACCGCTACCTTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATGTGCTTAGA
714 CATGTGCT---G----C--C-G--CAA-CC---CTCGGTCT-GG--T---C-CGA--T-CTTAGA
*
17883314 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
753 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * *
17883379 TGAGCGTGCGGGCGCTCAGTCGGCCAGA-GGGCGGGATGTGCAAGCCAGGGA-CTGGCCGGGACC
818 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GGCCGGGTCC
17883442 CCCGT-TGCGTGCTG-TCGATCC
882 CCC-TCTGCGTGCTGCT-GATCC
* * * *
17883463 TGCTGCCGCAACCCTCGGTCTGGTCGGA-CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
17883527 CTGAAGAAATGA-------GCTGGCGGGCGGGCACTACGCTGGTCAGAGAGACGGAATGCGCAAG
66 CCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
** * * * * * *
17883585 CCGTGGATCGATAGACTGATAGCTGGTTTTAGGCACATCTTCATATTTCTACGTTCCAATGCCAT
131 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
17883650 TTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCACTTGAAGTTTCATGCCAAGACG
196 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *** * *
17883715 ATTCGTTTTCTACTTTTCATGATTTTCGAAACTTTTTGTAGTTCAGGATTTTTTAAAATTTCTTC
261 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
** * *
17883780 GGAATAAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGTACAAAAA
326 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
17883845 AATTCAGCAAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
391 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
17883910 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
456 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
17883975 TCTCGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATC
521 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * ** *
17884040 ATGTGCGCACA-CCCCCTGGCCCCCTGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCAACGG
586 ATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* *
17884104 CGATGCTCCGGCGATAGTGCCCCAACGAAGAAAAAT
651 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
17884140 ATTCAGAAGG
Statistics
Matches: 11531, Mismatches: 1261, Indels: 595
0.86 0.09 0.04
Matches are distributed among these distances:
853 19 0.00
854 153 0.01
855 2 0.00
856 1 0.00
861 55 0.00
862 4 0.00
863 39 0.00
864 234 0.02
865 242 0.02
866 279 0.02
867 313 0.03
868 281 0.02
869 9 0.00
870 7 0.00
871 9 0.00
872 29 0.00
873 13 0.00
874 294 0.03
875 234 0.02
876 10 0.00
877 11 0.00
878 462 0.04
879 629 0.05
880 1165 0.10
881 57 0.00
882 175 0.02
883 190 0.02
884 612 0.05
885 646 0.06
886 14 0.00
887 438 0.04
888 7 0.00
889 287 0.02
890 4 0.00
891 63 0.01
892 257 0.02
893 280 0.02
894 676 0.06
895 466 0.04
896 5 0.00
897 66 0.01
898 43 0.00
899 2 0.00
900 748 0.06
901 385 0.03
902 95 0.01
903 2 0.00
904 3 0.00
907 2 0.00
908 1 0.00
909 1 0.00
910 327 0.03
911 11 0.00
912 2 0.00
913 148 0.01
914 310 0.03
917 5 0.00
918 533 0.05
924 21 0.00
925 91 0.01
926 64 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCC
Found at i:17875389 original size:26 final size:26
Alignment explanation
Indices: 17875360--17875412 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17875350 CCGGTCCGAT
17875360 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17875386 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17875412 C
1 C
17875413 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17876278 original size:26 final size:26
Alignment explanation
Indices: 17876249--17876301 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17876239 CTGGTCCGAT
17876249 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17876275 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17876301 C
1 C
17876302 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17877171 original size:25 final size:25
Alignment explanation
Indices: 17877133--17877182 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
17877123 CGGTCTGATC
17877133 TTAGACTGGCAATGAACTCCGTATG
1 TTAGACTGGCAATGAACTCCGTATG
*
17877158 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGCAATGAACTCCGTATG
17877183 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (25 bp):
TTAGACTGGCAATGAACTCCGTATG
Found at i:17878056 original size:26 final size:26
Alignment explanation
Indices: 17878027--17878077 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17878017 CGGTAAGATC
*
17878027 TTAGACTATGAATGAACTCCGTATGT
1 TTAGACTAGGAATGAACTCCGTATGT
* * *
17878053 TTAGACTGGGAATGAATTTCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
17878078 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGT
Found at i:17879817 original size:26 final size:26
Alignment explanation
Indices: 17879781--17879833 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17879771 TCGGTCCGAT
*
17879781 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17879807 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17879833 C
1 C
17879834 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17880677 original size:26 final size:26
Alignment explanation
Indices: 17880648--17880703 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17880638 TTGATCCGAT
*
17880648 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17880674 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17880700 CTTA
1 CTTA
17880704 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17883311 original size:26 final size:26
Alignment explanation
Indices: 17883282--17883360 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
17883272 CCAATCCGAT
*
17883282 CTTAGACTGGGAATGAACTCCATGTG
1 CTTAGACTGGGAATGAACTCCATATG
17883308 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17883334 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17883360 C
1 C
17883361 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17884594 original size:26 final size:26
Alignment explanation
Indices: 17884565--17884617 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17884555 CGATTCCGAT
17884565 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17884591 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17884617 C
1 C
17884618 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17887849 original size:26 final size:26
Alignment explanation
Indices: 17887820--17887870 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17887810 CCGATCTGAT
*
17887820 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17887846 CTTAGACTGGGAGTGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17887871 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17888755 original size:26 final size:26
Alignment explanation
Indices: 17888726--17888778 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17888716 CTGATCCGAT
17888726 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17888752 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17888778 C
1 C
17888779 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:17888823 original size:906 final size:902
Alignment explanation
Indices: 17886967--17891502 Score: 6152
Period size: 907 Copynumber: 5.1 Consensus size: 902
17886957 CTGGTCCGAT
17886967 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
17887032 CGGCTAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCTGGGT-CCCC-CT---T--TG-C-A---
66 CGGCCAGAGGGGC-GGATGCGCAAGTCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGCCAATCC
* * * * * *
17887085 TGCTGCCACAACCCTCGGTCCGGTTCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
129 TACTGCCACAACCCTCAGTTCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17887150 CCGATGAAACGATC-GGC---CGGGCAGGCGGGCAGTACACCGGCCAGAGAGACGGGATGCGCAA
194 CCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * **
17887211 GCCTTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTT-TGGTGTGCCAATGCC
259 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCC
* *
17887275 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC-T--A-CTTCACGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
17887336 CGACTCATTCTCTATTTTTCACGATTTTCAAAACTCTTTGCAGTTCAGGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
* * * *
17887401 TCGGAAAGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
453 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
17887466 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-ACAAAAAGTGTCCCCATT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCCATT
* *
17887530 TCAGTCACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
17887595 AGTTATCGAGGTTTGATAAGGGATA-GGGG---ATATAGGGGCCAAGTACGAGCACCCATTGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
17887656 ATCATGCGCGCACACA-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTTAGCCTCT
712 ATCATGTGCGCACACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGCTTCT
* * ** ** * * *
17887720 ACGACGATGCTCCGGTGATGGCACCACGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCT
777 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** *
17887785 AGCATGTGCTATCACAACCCTCGACCCGATCTGATCTTAGACTGGGAATGAACTCTGTATG
842 AGCATGTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
17887846 CTTAGACTGGGAGTGAACTCCGTATTCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
17887911 CGGCCAGAGGGGCAGGATGTGCAAGTCGGGGATCGATCGGGTCCCCCTTTGCATGCTGCCAATCC
66 CGGCCAGAGGGGC-GGATGCGCAAGTCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCAATCC
*
17887976 TACTGCCACAACCCTCGGTTCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
129 TACTGCCACAACCCTCAGTTCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
17888041 CCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACTGGATGCGCAA
194 CCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
17888106 GTCATGGAACGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
259 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17888171 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * **
17888236 GACTCATTTTCTATTTTTCACGATTTTCAAAACCTTTTGCAATTCAGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
* *
17888301 TGGATA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCTTGCACAA
454 TGGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAA
* * *
17888365 AAAAATTCAGCCAAAACCTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
17888430 TCAAACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
17888495 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACGAGCAGCCATCGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
17888560 ATCATGCGCGCACACACCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCCGCCGGTTAGCTCC
712 ATCATGTGCGCACACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGCTTC
* * ** *
17888625 TACGGCGATGCTCCGACGATGGCGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
776 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
17888690 CAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATCAACTCCGTATG
841 CAGCATGTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17888752 CTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
17888817 CGGCCAGA-GGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCC
66 CGGCCAGAGGGGCG-GATGCGCAAGTCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCAATCC
*
17888881 TACTGCCATAACCCTCAG-TCTGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 TACTGCCACAACCCTCAGTTC-GGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * * *
17888945 ACCGACAAAATAAGTGGGTGGGCGGGCGGGCGGGCTAGCACTACGCCGACCAGAGAGACGGGATA
193 ACCGACGAAACGAGCGGGCGGGCGGGCAGGC-GG---GCACTACGCCGGCCAGAGAGACGGGATG
** * *
17889010 CGCAAGCTGTGGATCGATAAGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
254 CGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
17889075 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGC
319 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * *
17889140 AAGACGACTCGTTCTCTATTTTTCATGATTTTCAAAAATTTTTGGGGTTCTGGATTTTTTAAAAT
384 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAAT
* * * *
17889205 TTTTTCGAAAGGATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCA
449 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * *
17889269 AAAAAAAATTCAGCCAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCC
514 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
17889334 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
579 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
17889399 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCG
644 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** * *
17889464 CACATCATGTGCGCACAC-CCCCCTGGCCCCCCCGATCGCATGAACCCCAATGCCGTCGGTCAGG
709 CACATCATGTGCGCACACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGC
*
17889528 TTCTCCGGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTG
773 TTCTCC-GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
*
17889593 AGCCCAGCATGTGCTACCGCAACCCTCAGTCC-AGTCTGATCTTAGACTGGGAATGAACTCCGTA
837 AGCCCAGCATGTGCTACCGCAACCCTCGGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTA
17889657 TG
901 TG
* * * * *
17889659 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCTACAAAACGAGGGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
17889724 CGGCCAGAGGGGCGCGAAGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTACGTGCTGCCAATCC
66 CGGCCAGAGGGGCG-GATGCGCAAGTCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCAATCC
*
17889788 TACTGCCACAACCCTCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 TACTGCCACAACCCTCAGTTC-GGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
17889852 ACCGACGAAACGAGCGGGCGGGCGAGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCACA
193 ACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
17889917 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCC
258 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
17889982 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
17890047 CGATTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTT
** * *
17890111 TTCAGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCAGGCACAA
452 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
17890176 AACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
17890241 TCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGCGGCGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
17890306 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
17890371 ATCATGTGTG--CACACCCCCCGGCCCACCGCTCGCCGGAAACCCCAATGCCGACGGTCAGGTTC
712 ATCATGTGCGCACACACCCCCCGGCCCCCCGATCGCCGG-AACCCCAATGCCGCCGGTCAGCTTC
* *
17890434 TCCGGCGATGCTCCGACGATGTTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
776 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * ** * * *
17890499 CAGCATGTGCTACAGTAACCCTCGATCCAATCCAATCTTATATTGGGAATGAACTCCATATG
841 CAGCATGTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17890561 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAACGTGCGTGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * **
17890626 CGGTTAGAGGGGCAGAATGCGCAAATCGAGAATCGTCCGGGTCCCCCTCTACGTGCTGCTGATCC
66 CGGCCAGAGGGGC-GGATGCGCAAGTCGGGGATCGT-CGGGTCCCCCTCTGCGTGCTGCCAATCC
* * * *
17890691 TGCTACCACAACCCTCATTTCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTTAGCCA
129 TACTGCCACAACCCTCAGTTCGGTCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
17890755 A-TGACGAAACGA------------GCAGGCAGGCACTATGCCGACCAGATAGACGAGATGCGCA
193 ACCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
17890807 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
258 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
17890872 ACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCCTGGTAAAA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * *
17890937 CGACTCGTTTT-T-TTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
* * * *
17891000 TTGGAAGGATTTTTGGCCCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCA-TAA
453 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
17891064 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
17891129 CAGACACTTTAGTGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
17891194 GTTCTTGAGGTGTGATGAGGG-TAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
17891258 TCATGTGCG--CACACCCCCTGG-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAAG-TTCT
713 TCATGTGCGCACACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC-AGCTTCT
* * * * *
17891319 CCGACGATGCTCTGGCGAT-GTGCCCCGGCGAAGAAAAATGCGGCACCAGTACATGCCCGAGCCC
777 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * * * * *
17891383 AGCATGTACTGCCGTAAGCCTTGGTCCGGTCTGATCTTAGACTGGGAATGATCTCCATTTG
842 AGCATGTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17891444 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
17891503 GACGGGCGGG
Statistics
Matches: 3280, Mismatches: 323, Indels: 104
0.88 0.09 0.03
Matches are distributed among these distances:
879 95 0.03
880 5 0.00
881 1 0.00
883 141 0.04
884 39 0.01
885 14 0.00
886 62 0.02
887 145 0.04
888 101 0.03
889 2 0.00
890 164 0.05
891 72 0.02
892 3 0.00
895 141 0.04
896 2 0.00
898 1 0.00
899 112 0.03
900 163 0.05
901 7 0.00
902 220 0.07
903 363 0.11
904 251 0.08
905 138 0.04
906 260 0.08
907 494 0.15
908 37 0.01
909 247 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGATGCGCAAGTCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTA
CTGCCACAACCCTCAGTTCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGCTTCTCCGG
CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17889669 original size:26 final size:26
Alignment explanation
Indices: 17889633--17889685 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17889623 CCAGTCTGAT
*
17889633 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17889659 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17889685 C
1 C
17889686 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17889879 original size:12 final size:12
Alignment explanation
Indices: 17889862--17889886 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17889852 ACCGACGAAA
17889862 CGAGCGGGCGGG
1 CGAGCGGGCGGG
17889874 CGAGCGGGCGGG
1 CGAGCGGGCGGG
17889886 C
1 C
17889887 ACTACGTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.64, T:0.00
Consensus pattern (12 bp):
CGAGCGGGCGGG
Found at i:17892183 original size:26 final size:26
Alignment explanation
Indices: 17892154--17892206 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17892144 CTGGTTTGAT
*
17892154 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17892180 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17892206 C
1 C
17892207 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17893069 original size:26 final size:26
Alignment explanation
Indices: 17893040--17893090 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17893030 CTGGTCCGAT
*
17893040 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
17893066 CTTAGAATGGGAATGAACTCCGTAT
1 CTTAGAATGGGAATGAACTCCGTAT
17893091 CCCTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:17893212 original size:886 final size:883
Alignment explanation
Indices: 17891444--17894137 Score: 3525
Period size: 886 Copynumber: 3.0 Consensus size: 883
17891434 TCTCCATTTG
* * *
17891444 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGACGGG
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACG--A-AA-C--G-AGGCGGA----
** * *
17891509 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGCATCGATAGGGTGGTAGGTGGGT
55 CGGGCACTACACCGG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
17891574 TTAGGCACATCTTCATATTTCTACGTACGAATGCCATTTTTATGGCTTGTGAATTCATACAATGG
119 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
17891639 TCCCCTAAGCATTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTTTATTTTTCACGATTTTTG
184 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * *
17891704 AAACATTTTGTGGTTCGGGAGTTTTTAAAATTTTTTTGGAAAGTGTTTTGGCCCTAAACTTGGTA
249 AAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC---GTA
*
17891769 GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTC----G---AA-
311 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAACTCAAGTGTACAAG
* **
17891826 ATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAATT
375 ATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
17891891 TGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
439 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
* *
17891956 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCACCTGGCCCCCCTGA
504 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCC-CCCGG-CCCCCAGA
* *
17892021 TCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTTCGGCGATGGTGCCCC-AGTG
567 TCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-TG
* * * * *
17892085 AAGAAAAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTCCTGTAACCCTCGGTCTGGTT
631 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTCC-GCAACCCTTGGTCTGGTC
* *
17892150 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
695 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
17892215 ACCCACGAAACGAGCGTGC-GATCACTCAGCCGACCGGAGGGGCAGGATGTGCAAGAT-GGGGAT
760 ACCCACGAAACGAGCGTGCGGA-CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAA-ATCGGGGAT
* * * * *** * **
17892278 CGATCAGGTTCCCCTCTGCGTGCTGTCGATCCTGCTGCTGTAACCCTCGGTCTGGTCTGAT
823 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCCAAT
* * ** *
17892339 TTTAGACTGGGAATGAAC-CTGTATGCCTAAGCCAACCGATGAAACGA-GCGGACGGGCACTACA
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGGCGGACGGGCACTACA
* *
17892402 CCGGTCGGAGAGACGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
66 CCGG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
17892467 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
130 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
17892532 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
195 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTGC
** *
17892597 GGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC-TAGGCGTGATCCTTGT
260 GGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACGTAGACGTGATCCTTGT
17892661 -TTTTATGTTGGCATGCACAAAAAAATTCAGCTAAAACCTCGAAGTGTACAAGATTTTGTGACCA
325 ATTTT-TGTTGGCATGCACAAAAAAATTCAGCTAAAA-CTC-AAGTGTACAAGATTTTGTGACCA
* * * * *
17892725 TTTGAAAAAAGTGTCTCCATTTCAGACAGTTTAATGGCTA-TCGACGGCGAACCTATAAAATCTC
387 TTTGAAAAAAGTGTC-CCATTTCAGACACTTTAATGGCTACT-GGCAGCAAACCTGTAAAATCTC
* ** *
17892789 AAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAACGGC
450 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
** * *
17892854 CAAGTACCAGCACCCATCGCACATCAAGTCCGCACACCCCCCGGCCCCTCAGATCGTTGAAACCC
515 CAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCCGGCCCC-CAGATCGTCGAAACCC
* * * *
17892919 CAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGG
579 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGG
* * * *
17892984 CACCATCACATGCCCGAGCCCAGCATGCGCTGCCGCAATCCTTGGTCTGGTCCGATCTTAGACTG
644 CACCAACACATGCCCGAGCCCAGCATGTGCT-CCGCAACCCTTGGTCTGGTCTGATCTTAGACTG
* *
17893049 GGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATCCCTAAGTGAACCCACGAAACGA
708 GGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
17893114 GCGTGCGGACGCTCAGCTGGCCAAAGAGGCGGGATGCACAAATCGGGGATCGGTTGGGTCCCCCT
773 GCGTGCGGACGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAATCGGGGATCGGTCGGGTCCCCCT
*
17893179 CTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCCGGTCCAAT
838 CTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCCAAT
* *
17893225 CTTAGACTAGGAATGAACTCCATATGCCTAAGCTAACCGACGAAACGAGCGGGCGGGCGGGCAGG
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA---GGCGGACGGGCA--
17893290 CATGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
61 C-T--AC-AC--CGGC-AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
17893355 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
119 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
17893420 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTT
184 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTT
* * ** ** * * **
17893484 GAAACCTTTTACGGTTCGGGATTTTTTCTAATTTTTTCAGACGGAGGTTTGGTACCAAACTTGGT
248 GAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC---GT
* *
17893549 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAACTCAGCTAAAGACTCAAAGTGTACA
310 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA-ACTC-AAGTGTACA
*
17893614 AGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATAGCTACTGGCAGCAAA
373 AGATTTTGTGACCATTTGAAAAAAGTGTCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
17893679 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
437 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
* **
17893744 CCAATATAAGGGCCAAGTACCAGCGCCCATCGCACATCTTGTGCGCACACCCCCCGGCCCCCCTA
502 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCCGGCCCCCAGA
* * * * * *
17893809 TCGCCGGAACCCCAATGCCGCCAGTTAGGTTCTCCGACGATGCTCCGGCGATGGAGCCCCGGTGA
567 TCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGA
* * * *
17893874 AGAAAAATGCGGCACCAGCACTTGCCTGAGCCCAGCATGTGCTACCGCAACCCTTGGTCCGGTCT
632 AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT-CCGCAACCCTTGGTCTGGTCT
* * * *
17893939 GATCTTAGACTGTGAACGAACTCCGTATGCTTAGATTGGGAATGAAGTCCGTATGCCTAAGTCAA
696 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * **
17894004 CCCATGAAATGAGTGTGCAGG-CGCTCAACCGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCG
761 CCCACGAAACGAGCGTGC-GGACGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAATCGGGGATCG
* ** * ** * * *
17894068 GCCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACTGCAACCCTCGATCCAGTCCGAT
825 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCCAAT
17894127 CTTAGACTAGG
1 CTTAGACTAGG
17894138 TAGACATGAT
Statistics
Matches: 1577, Mismatches: 180, Indels: 77
0.86 0.10 0.04
Matches are distributed among these distances:
877 8 0.01
878 44 0.03
882 230 0.15
883 1 0.00
885 6 0.00
886 298 0.19
887 190 0.12
888 1 0.00
890 1 0.00
891 12 0.01
892 1 0.00
893 1 0.00
894 22 0.01
895 17 0.01
896 2 0.00
897 2 0.00
898 1 0.00
899 223 0.14
900 1 0.00
902 282 0.18
903 228 0.14
904 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGGCGGACGGGCACTACA
CCGGCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTGCG
GTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAACTCAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCTTGTGCGCACACCCCCCGGCCCCCAGATCGTCGAAACCCCAATGCC
GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAAC
ACATGCCCGAGCCCAGCATGTGCTCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
ACGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAATCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
TGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCCAAT
Found at i:17893971 original size:26 final size:26
Alignment explanation
Indices: 17893942--17893994 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17893932 CCGGTCTGAT
*
17893942 CTTAGACTGTGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* * *
17893968 CTTAGATTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
17893994 C
1 C
17893995 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:17896425 original size:26 final size:26
Alignment explanation
Indices: 17896347--17896418 Score: 135
Period size: 26 Copynumber: 2.8 Consensus size: 26
17896337 CCAGTTCGTT
*
17896347 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17896373 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17896399 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
17896419 TGTATGCCTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17897312 original size:26 final size:26
Alignment explanation
Indices: 17897269--17897327 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
17897259 CTTGGTATGA
17897269 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
17897293 TCTGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
17897319 TCCGTATGC
1 TCCGTATGC
17897328 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 25 0.81
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:17898181 original size:26 final size:26
Alignment explanation
Indices: 17898145--17898197 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17898135 CTGGTCCGAT
* *
17898145 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17898171 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17898197 C
1 C
17898198 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17899071 original size:26 final size:26
Alignment explanation
Indices: 17899035--17899087 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17899025 CTGGTCCGAT
17899035 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17899061 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17899087 C
1 C
17899088 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17899726 original size:902 final size:899
Alignment explanation
Indices: 17897913--17910688 Score: 16370
Period size: 896 Copynumber: 14.4 Consensus size: 899
17897903 AACTTGTAGA
* *
17897913 GTGAGTTCTCGAGGTTTGATGAGTGATA-GGGGCCAATATAAGGGCCAAGTACCAGCATCCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
17897977 CACATCATGTGCGCACACCCCCCCGGCCTCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGAT
66 CACATCATGTGCGCACA-CCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * * * * *
17898042 TGTCCGATGATTCTCCAACAATGGTGCCCCGACGAAGAAAAATGTGGCACCAGTATATGCCCAAG
129 TCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
17898107 CCCAGCATGTGCTACTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
194 CCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
17898172 TTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCC
259 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * ** *
17898237 GGACAGAGGGGCGAGATGCGCAAGCTGGGGATCAACCGGGTCCCCCTCTGCGTGCTG-CTGATCA
324 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTC-GATCC
* * * * * * *
17898301 TGCTGTCGCAACCCTCGGTCCGGTCTGATCTTATTA-GGGGAATGAACTCCCTATACCTAAGCCA
388 TGCTGCCGCAACCCTCGATCCAGTCTGATCTTA-GACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17898365 ACCAACGAAAC---G-A-GC-GGC---CGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGC
452 ACCGACGAAACGAAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
**
17898421 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
517 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
17898486 TTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCCCGTGAAGTTACATGGCAAGACGA
582 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *** * * * *
17898551 CTCGTTTTCTATTTTGCGTAATTTTTAAAAGTTTTTGTGGTTCAGGATTTTTT-AAATGTTTTTC
647 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT-TTTTTC
*
17898615 GGAAGGAGTTTTTGCCCC-AACGTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
711 GGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
17898679 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTC
775 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
17898744 AGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
840 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
** * *
17898804 GTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGATAATATAAGGGCCAAATACCATCACCCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
*
17898868 CACATCATGTGCGCACACCCCCCGGCCCACCCGATCGTCGGAACCCCAATACCGCCGGTCAGGTT
66 CACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
17898933 ATCCGATGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGC
130 CTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * *
17898998 CCAGCATGTGCTACCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCT
195 CCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
17899063 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
260 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
17899128 GCCAGAGGGGTGGGATGCGCAAGCTGGGGATTGGCCGGGTCCCCCTCTACATGCTGTCGATCTTG
325 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
* * * ** * * * *
17899193 CTACCGTAGCCCTCGATCTGGTTTAATCTTAGACTCGGAATGAACTCCGTATGCCTAAGGCAACC
390 CTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
17899258 GATGAAACGAGCGAGCAGGTGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
455 GACGAAACGA---AGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
17899323 CATGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
517 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
17899388 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
582 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * *
17899453 CTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTGCGGGATTTCTTAAAGTTTTTTTG
647 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
17899518 CAAGGATTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
712 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
17899583 CTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
777 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
17899648 ACACTTTAATGGCTACTCGCAGCAAACTTGTAAAATCTCAAATG-TTTTGTAAGGGGGT
842 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-TAAGGGGGT
* * ** *
17899706 GTGAGTTCTCGAGGTTTGATGCGGGATAGGGGGCCAATATAAGCGCCAAGTATGAGAACCCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
17899771 CACATCATGTGTGCACACCCCCCGCGACCCCCCAGATCATCGGAACCCCAATGCCACCGGTCAGG
66 CACATCATGTGCGCACACCCCCCG-G-CCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGG
* ** *
17899836 TTCTCTGGCGATGCTGCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
128 TTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * * * *
17899901 GCCCAGCATGTGCTGCCGCAATCCTTGTTATGATCTGATCTTAGACTGGGAATGAACTCTGTATG
193 GCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17899966 CTTTGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
17900031 TGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGGCTGAGTCCCCCTCTGCGTGC--T-G--CC
323 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
17900091 -G-T-----AACCCTC-ATTCCAGT-TCAATCTTAGACTGGGAATGAACTCCATATCCCTAACCC
388 TGCTGCCGCAACCCTCGA-TCCAGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
*
17900147 AACCGACGAAACGAA--A---AGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
451 AACCGACGAAACGAAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
17900207 CCGTGGATCGATAGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTCTGCAAGCCAATGCCAT
516 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
17900272 TTTTATGGCTTGTAAATTCAAACAATAGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACG
581 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
17900337 ACTCGTTTTCTCTTTTTCACGATTTTTGAAACTTTTTTCGATTCGGGATTTTTTAAAATTTTTTC
646 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * *
17900402 GGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTTTTGGCATGCACAAAAA
711 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
17900467 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTC
776 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTC
* * *
17900532 AAACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATACTCTTTAA-GGGGT
840 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
17900591 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACTCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
17900656 CACAACATGTGCGCACAACCCCCCAGCCCCCCCAATCTTCGGAACCCTAATGCC-CTCGGTCA-G
66 CACATCATGTGCGCAC-ACCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGC-CGGTCAGG
** * * *
17900719 ------G-T--T-CTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGACGCCAGCACATGCCCGA
128 TTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
17900774 GCCCAGCATGTGCTGCCGCAA-CC-C--T-TGGTCCGATC-----C-------G-A-T-C-T-TG
193 GCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* **
17900817 ----GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCATA
258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * ** * * *
17900878 TAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCTTCTGCATGTTGT-GAATC
323 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCG-ATC
* * * * *
17900942 CTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
387 CTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17901007 ACCGATGAAACGAACGGGCGGGCGGGCTGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
452 ACCGACGAAACGAA---GCAGGCGGGCGGGC-GGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * ***
17901072 AAGGCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTATGTGCCAATGC
513 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
17901137 CATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCC-TCACATGAAGTTTCATGGCAAG
578 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *** ** * *
17901200 ACGACTCGCTTTCTATTATGCGTAATTTTCAAAAGTTTTTGCGGTTCGAGATTTTTTAAAATTTT
643 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * *
17901265 TTCGGAAGGAGTTTTCGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAAGCACAA
708 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
17901330 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATT
773 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
17901395 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGT
838 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
17901457 GTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
17901522 CACATCATGTGCGCACA---------CCCCCGATAGCCGGAACCCCGAT--AGCCGG--A---AC
66 CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * **
17901571 -CCCA--ATGCTCCGTCGATGGTGCCTCGACAAAGAAAATTTTGGCACCAGCACATGCCCGAGCC
131 TCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
17901633 CAACATGTGCTGCCACAACCCTTTG-TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCT
196 CAGCATGTGCTGCCGCAACCC-TCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
17901697 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGGCG
260 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * * *
17901762 GCCAGAGGGGTGGGATGCACAAGCCGGGGATCGACTGGGTCCCCCTCTACATGCTGCCAATCCTG
325 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
* *
17901827 CTGCCACAACCCTCGATCC-GATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAC
390 CTGCCGCAACCCTCGATCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * ** * * *
17901891 CGACGAAACGAA-CGGGCGGGCAGGTGGGCACTGTGCCGGCCAGAGAGAGGGGATGCGCAGGCCA
454 CGACGAAACGAAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * **
17901955 TGGACCGATAGGGTCGTAGGTGGGTTTAGGCACATCTTCATATTTGTGTGTGCCAATGCCATTTT
519 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
17902020 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTGATGGCGAGACGACT
584 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
17902085 CGTTTTCCATTTTTCACGATTTTTGAAACTTTTTACGATTTGGGATTTTTTAAAATTTTTTGGGA
649 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
** * * * *
17902150 AGGAGTTTTCTCCCCAAACTTGGTTGACGTAATCCTTGTATTTTTGTTGGCATGTAAAAAAAAAT
714 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
17902215 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAATAGTGTCCCCATTTCAGAC
779 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
17902279 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
844 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * ** *
17902335 GTGAGTTCTTGAGGTTTGATGAGTGATA-GGGGCCAATATAAGCACCAAGTACCAGCATCCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * ** ** *
17902399 CACATCATGTGCGTAC-CCCCCTGGCCCCCCCGATCACCGGAACTGCAATGCCGTCGGTCAGGTT
66 CACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
17902463 CTCTGATGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGCGGTACCAGCACATGCCCGCGC
130 CTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * * * * *
17902528 TCAGAAAGGGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTTTGCT
195 CCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
17902593 TAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGGCA
260 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * ** * *
17902658 GCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGGTTGGGTCCCCCTCTGCGTGCTGCCGATCTTG
325 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
* * *
17902723 CTACTGCAACCCTCTG-TCCAGTCTGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
390 CTGCCGCAACCCTC-GATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * **
17902787 TGATGAAAC-AAGCAGGCGGGCGAACGGGCAAGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
454 CGACGAAACGAAGCAGGC-GG-G--CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
17902851 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTGCGTGCCAATGCCA
515 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
17902916 TTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGAT
580 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17902981 GACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTGTGGTTCGTGATTTTTTAAAATTTTTT
645 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * *
17903046 CAGAAGG-GATTTTGGCCCCAAACCTT-TTAGACATGATCCTTGTATTTTTGTTGGCAAGCACAA
710 CGGAAGGAG-TTTTGGCCCCAAA-CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
17903109 AAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
773 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
17903174 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGT
838 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
** *
17903235 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTGGCACCCTTCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** * *
17903300 CACATCATGACCGCACACCCCCCAGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
66 CACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
** ** ** * *
17903365 CTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAGGAATGCGGCACCAACACATGCCCAAGC
130 CTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
17903430 CCAGCATGTCCTGCCGTAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTTCGTATGCT
195 CCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
17903495 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC-AAAGCGAGCCTGCGGGCGCTCAGCC
260 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CGAGCGTGCGGGCGCTCAGCC
* * * *
17903559 GGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTTCCCCTCTACGTGCTG-CTGATCT
324 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTC-GATCC
* ** * * ** * *
17903623 TGCTACTACAACCCTCAATCTAGTCCAATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAA
388 TGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
17903688 CCGACGAAAC---G-A---------GCGGG---T----CGGCCAGAGAGACGGGATGCGCAAGCC
453 CCGACGAAACGAAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
17903733 GTGGATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTTTGCATGGCAATGACATTT
518 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
17903798 TTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGAC
583 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** *
17903863 TCGTTTTCTTTTTTTCACGATTTTCAAAACTTTTTAG-GGTTCGGGATTTTTTAAAATTTTTTTG
648 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-GCGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
17903927 GAAGGATTTTTGGCCCCAAACTTGGCAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAA
712 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
17903992 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCGCATTTCAG
777 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
17904057 ACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGAGT
842 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
17904114 GTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** * ** * * *
17904179 CACATCATGACCGCACACCCCCCCAGCCCCCTCGATCACCTGAACCGCAATGCCGCCGGTGAGGT
66 CACATCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * ** ** *
17904244 TCCCCGACGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAG
129 TCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * * *
17904309 CCCGGCATGGGCTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
194 CCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* ** * *
17904374 TTAGACTAGGAATGAACTCCGTATGCCTAAGTTTACCCACGAAACAAGCGTGCGGGCGCTCAGGC
259 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
17904439 GGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGAGTCCCCCTTTACGTGCTGTCGATCCT
324 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * **
17904504 GCTGCCGCAAACCTC-AGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
389 GCTGCCGCAACCCTCGA-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
17904568 CCGACGAAAC-AAGCGGGCGGACGGGCGGGCGTGCACTACGCCGGCCAGA-AGACGGGATGCGCA
453 CCGACGAAACGAAGC---AGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
17904631 AGTCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
514 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
17904696 ATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGA
579 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
17904761 TGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAACTTTT
644 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
*
17904826 TCGGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAA
709 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
17904890 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTT
774 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
17904955 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAGGGGT
839 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * * *
17905016 ATGAGTTCTCGAGGTTTGATGAGAGATAGAGGGCCAATATAAGAGCCAAGTACCAGCACCCATCC
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** * *
17905081 CACATCATGACCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTT
66 CACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
** * * * * * *
17905146 C-CCTGGCGATGCTCC-AGTGATGGTGCTCCGACGAAGAAAAATGTGACACCAGTACATGCTCGA
130 CTCC-GATGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * *
17905209 GCCC-GACATGGGCTGCTGCAACCCTC-AGTCTGGTCTGTTCTTAGACTGGGAATGAACTTCGTA
193 GCCCAG-CATGTGCTGCCGCAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
17905272 TGCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGTGCGCTCA
256 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *** **
17905337 GCCGGCTAGAGAGGCGGGATGCACAAGTCGGGGATCAATCGGGTCCCCCTCTGCGTGCTACCGAT
321 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGAT
* * * *
17905402 CCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
386 CCTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * **
17905467 AACTGACGAAAC-AAGTGGGCGAGCAGGGCGGGCACTACGTGGGCCAGAGAGACGGGATGCGCAA
451 AACCGACGAAACGAAGCAGGCGGGC-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * ** * *
17905531 GCCGTGGATCGATGGGGTGGTGGGTGGGTTTAGGCATATCTAAATATTTCTGCATGCCAAGGTCA
515 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * * *
17905596 TTTTTACGGCTTGTAATTTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATAGCAAGAT
580 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
17905661 GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGAATTTTTAAAATTTTTT
645 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
*
17905726 CGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
710 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
17905790 AAATTCAGCTAAAAACTCGAACTGTACATGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTC
775 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
17905855 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAATTCTCAAATGCTTTTTAAGGGGGT
840 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
17905915 GTGAGTTCTCGAGGTTTGCTGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCCGCACCCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
17905980 CACATCATGGGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAAG-T
66 CACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * *
17906044 -T-C-----T--T-CGACGATGGTGCCCGGGCGAAGAAAAATGTGGTACCAACACATGCCCGAGC
130 CTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * *
17906099 CTAGCATGTGCTACCGTAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
195 CCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
17906164 TAGAGC-GGGAATGAACTCCATATGCCTAAGTC-ACCTACAAAACGAGCGTGCGGGCGCTCAGCT
260 TAGA-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
17906227 GGCCAAAGGGGCGGGATGCGCAAGGCGGGGATCGACCGGGTCCCCCTCTGTGTGATGTCGATCCT
324 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * * * * *
17906292 GCTACCGCAACCTTC-AGTCCAGTCCGATCTTAGACAGGGAATGAACTCAGTATGCCTATGCCAA
389 GCTGCCGCAACCCTCGA-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
17906356 CCGACGAAAC-AAGCGGGCGGGCGGGCGGGCACTACACTGACCAGAGAGACAGGATGCGTAAGTC
453 CCGACGAAACGAAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
17906420 GTGAATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTACCAATGCCATTT
518 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
17906485 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
583 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
17906550 TCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGG
648 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
17906615 AAGGTGTTTTGGCCCCAAACCTGGTAGACCTGATCCTTGTATTTTTCTTGGTATGCACAAAAAAA
713 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
17906680 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
778 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
17906745 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
843 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
17906802 GTGAGTTCTCGAGGTTTCATGAGGGATAAGGGGCCAATCTAAGAGCCAAGTACCAGCACCCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
17906867 CACATAAAGTGCGCACA-CCCCCGACCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTT
66 CACATCATGTGCGCACACCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
17906931 CTCCGATGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCTCGAG-
130 CTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * * *
17906995 CCAGGCATGTGGTGCTGCAACCCTTGGTATGGTCCGATCTTAGACTGAGAGTGAACTCCGTATGC
195 CCA-GCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
*
17907060 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCC
259 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * ** * * *
17907125 GGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCTTCCGTATGTTGCCAATCCT
324 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCT
** * * * * *
17907190 GCAACCGTAACCCTC-AGTCCAGTTTGATCTTAGACTAGAAATGAACTCCATATGCCTAAGCCAA
389 GCTGCCGCAACCCTCGA-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * * * *
17907254 CCGACGAAACGAA-CAGGCGGACGGGCAGGCATTACATCGGCCAGAGGGACCGAATGCGCAAGTC
453 CCGACGAAACGAAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* **
17907318 GTGGATCGTTAGGGTGGTAGGTGGGTTTAGGCACATCTTCA-ATTTCTGTGTGCCAATGCCATTT
518 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
17907382 TGATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGGC
583 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
17907447 TCGTTTTCTATTTGTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGG
648 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
17907512 AAGGAGTTTTGG-CCCAAGCTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
713 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
17907576 TTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
778 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
17907641 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
843 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
17907698 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
17907763 CACATCATGTGTGCACACCCCCCAAG-CCCCCGATCGTCGGAACCCCAATGCCGCCAGTTAGTTT
66 CACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * * * *
17907827 TTTCGACGATGCTCCGACAATGGTGCCCCGACGAAGAAAAATACAGCACCAGGACATGCCCGAGC
130 CTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
17907892 CCAGCATGTGCTACCGCAACCCTCAATCCGGT-CAAGTCTTAGACTGGGAATGAACTCCGTATGC
195 CCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGC
* * *
17907956 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTTCGGGTGCTCAGCC
259 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * * * *
17908021 GGCCAGAGTGGCGGGATGCGTAAGCCGAGAATTGGCCGGGTCCTCCTCTGCATGTTCTCGATCTT
324 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * * *
17908086 GCTGCCGGAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAACCAAC
389 GCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* ** *
17908151 CGACGAAATGAA-CA----GGCGGGCGGGCACTACGCCGATCAGAGAGACGGGATGCACAAGCCG
454 CGACGAAACGAAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
17908211 TGGATCGATAGGCTGGTAGGTGAGTTCAGGCACATCTTCATATTTATGAATGCCAATGCCATTTT
519 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
17908276 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACT
584 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
17908341 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTGTCGGA
649 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
** * * *
17908406 AGGAGTTTTGGCCCCAAACTTTTTAGACATGATCCTTGTAGTTTTGCTGGCATGCACAAAAAAAT
714 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
17908471 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
779 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
17908536 ACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTATGGGGGT
844 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
17908592 GTGGGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* **
17908657 CACATCATGTGCGCACACCCCCCGACCCCCTCGATCGTCGGAACCCCAATGCCGTTGGTCAGGTT
66 CACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
17908722 CTCC-AGTGATGCTCCGACGATGGTGCCTCGGCGAAGAAAAATGCAGCACCAGTACATGCCCGAG
130 CTCCGA-TGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * *
17908786 CCTAGCATGTGCTGCCGTAACCCAC-AGTCTGGTCCAATCATAGACTGAGAATGAACTCCGTATG
194 CCCAGCATGTGCTGCCGCAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * *
17908850 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCGTGAAACGAGTGTACGGGCGCTCAGC
258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
17908915 CGGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGGTTGGGTCCCCCTCTGTGTGCTGCCGATCT
323 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
17908980 TGCTGCCACAACTCTTGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
388 TGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17909045 CTGACGAAAC---G-A-GCGGGCGGGCAGGCACTACGCCGGTCAGAGAGACGGGATGCACAAGTC
453 CCGACGAAACGAAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
17909105 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATAT
518 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
17909170 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTTATGGCAGGACGAC
583 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
17909235 TCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTACGGTTCAGGATTTTTTAAAATCTTTTCGG
648 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
** * * *
17909299 AAGGAGTTTTGGATCCAAACTTGGTAAAAGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAACA
713 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-A
* * * *
17909364 CATTCAGCAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAA-AGTCCCCATTTCA
777 -ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
17909428 AACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGT
841 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
17909487 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
17909552 CACATCATGTGCGCACACCCCTCCAGGCCCCCCCGATCGTCGGAACCCCAATGTCACCGGTCAGT
66 CACATCATGTGCGCACACCCC-CC-GG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * * * ** *
17909617 TTCTTCGACGATGCTCC-AGCAATGGTGCCTCGGTGAAGAAAAATACGGCACCAGCACATGCCCG
128 TTCTCCGATGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* *
17909681 AGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCGGGTCTTAGACTGGGAATGAACTCCGTAT
192 AGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
** * *
17909746 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAATGTTCGGGTGCTCAG
257 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
17909811 CCGGCCAGAGGGGCGGGATGCGTAAGCCGAGAATTGGCCGGGTCCTCCTCTGCATGTTCTCGATC
322 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * *
17909876 TTGCTGCCGGAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAACCA
387 CTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** *
17909941 ACCGACGAAATGAA-CA----GGCGGGCGGGCACTACGCCGATCAGAGAGACGGGATGCACAAGC
452 ACCGACGAAACGAAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
17910001 CGTGGATCGATAGGCTGGTAGGTGAGTTCAGGCACATCTTCATATTTATGAATGCCAATGCCATT
517 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
17910066 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGA
582 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
17910131 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTCG
647 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * **
17910196 GAAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGTGTGCAC-AAAAA
712 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
17910260 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGCAAAAATTGTCCCCATTTCAG
777 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
17910325 ACAATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGT
842 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
17910383 GTGGGTTCTCGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCG
1 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
17910448 CACATCATGTGCGCAAACCCCCCGACCCCTTCGATCG-CAGGAACCCCAATGCCGTCGGTCAGG-
66 CACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGT
** * *
17910511 T-T----T--T--T-CGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATTCCCGAG
129 TCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * * * *
17910566 CCCAGCATGCGCTGCCGTAACCCTCGGTCGGGTCCGATCTTAGACTGGGAATCAATTTCATATGC
194 CCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* ** * *
17910631 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGGGCG
259 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
17910689 GTCGGGCGGG
Statistics
Matches: 10415, Mismatches: 1245, Indels: 458
0.86 0.10 0.04
Matches are distributed among these distances:
847 104 0.01
849 2 0.00
851 3 0.00
852 3 0.00
853 4 0.00
854 3 0.00
855 19 0.00
856 63 0.01
857 2 0.00
859 59 0.01
860 2 0.00
861 8 0.00
863 1 0.00
865 55 0.01
866 278 0.03
867 14 0.00
868 127 0.01
869 1 0.00
872 2 0.00
873 68 0.01
874 2 0.00
875 1 0.00
877 169 0.02
878 124 0.01
879 623 0.06
880 331 0.03
881 5 0.00
882 184 0.02
883 151 0.01
884 25 0.00
885 417 0.04
886 337 0.03
887 392 0.04
888 127 0.01
889 8 0.00
890 327 0.03
891 77 0.01
892 74 0.01
893 214 0.02
894 362 0.03
895 697 0.07
896 1042 0.10
897 800 0.08
898 362 0.03
899 458 0.04
900 342 0.03
901 594 0.06
902 1032 0.10
903 65 0.01
904 4 0.00
905 251 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
TCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
CAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGC
TGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
Found at i:17901560 original size:15 final size:15
Alignment explanation
Indices: 17901540--17901573 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
17901530 GTGCGCACAC
17901540 CCCCGATAGCCGGAA
1 CCCCGATAGCCGGAA
17901555 CCCCGATAGCCGGAA
1 CCCCGATAGCCGGAA
17901570 CCCC
1 CCCC
17901574 AATGCTCCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.47, G:0.24, T:0.06
Consensus pattern (15 bp):
CCCCGATAGCCGGAA
Found at i:17901698 original size:26 final size:26
Alignment explanation
Indices: 17901669--17901721 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17901659 CCGGTCTGAT
*
17901669 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17901695 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17901721 C
1 C
17901722 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17903496 original size:26 final size:26
Alignment explanation
Indices: 17903467--17903519 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17903457 CTGATTCGAT
17903467 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
17903493 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17903519 C
1 C
17903520 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17904385 original size:26 final size:26
Alignment explanation
Indices: 17904347--17904399 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17904337 CCGGTCTGAT
* *
17904347 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17904373 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17904399 C
1 C
17904400 CTAAGTTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17905286 original size:26 final size:26
Alignment explanation
Indices: 17905248--17905300 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17905238 CTGGTCTGTT
* * *
17905248 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
17905274 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
17905300 C
1 C
17905301 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:17906173 original size:26 final size:26
Alignment explanation
Indices: 17906136--17906188 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17906126 CTGGTCTGAT
*
17906136 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17906162 CTTAGAGC-GGGAATGAACTCCATATG
1 CTTAGA-CTGGGAATGAACTCCATATG
17906188 C
1 C
17906189 CTAAGTCACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17907062 original size:26 final size:26
Alignment explanation
Indices: 17907033--17907085 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17907023 ATGGTCCGAT
*
17907033 CTTAGACTGAGAGTGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17907059 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17907085 C
1 C
17907086 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17907496 original size:897 final size:899
Alignment explanation
Indices: 17894173--17910688 Score: 20833
Period size: 902 Copynumber: 18.5 Consensus size: 899
17894163 AAAAAGTGTA
* *
17894173 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGCATGCACAAAAAAAATTCAGCTAAAAAC
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAAC
* *
17894238 TCAAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
65 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
17894303 ACTGGCAGCAAACTTGTAAAATCTCAGAGGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
130 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
17894368 AGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGTACAGCCC
195 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * * * * * * * * *
17894433 CCCAGGCTCGCCCAATCGCCAGAACCCCAACGCCGTCGATCAGGTTCTTCGAC-ATGCTCC-AGC
259 CCC-GACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-C
** * * * *
17894496 GATGGTGCCCCGGTGATGAAAAATGTGGCACCAGCACATGCCCGAGCCCATCATGTGCTGCCACA
322 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
17894561 ACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAATGAATTC
387 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * *
17894626 CGT-TCGCTTAAGTGAACCCATGAAACGAGCGTGCAGGCGCTCCGCCGGCCAGAGGGGCGGGATA
452 CGTAT-GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * ** **
17894690 CGCAAGCCGGGGATCGGCCAGGTCCCCCTCTACATGCTGCCGATCCTGCTGCTACAACCCTTGGT
516 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGT
** * * * * * * *
17894755 CTGGTTTGATCTTGGTCTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCCGGCG
581 CCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCG
* * *
17894820 GGCGGGCGTACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGCG
646 GGCGGGC--A--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
17894885 GTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAGATT
707 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* *
17894950 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATATTTC
772 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * **
17895015 ATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAACGAGTTTTGGAA
837 ACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
17895078 CCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAATT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
17895143 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * * * *
17895208 CTGGCAACAAACTTGCAAAATCTCAAAGGCTCTCTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
17895273 GGGATTGGGGGCCAATATAAGAGCCAAGTACCACCACCCATCGCAAATCATGTGCGCACACCTCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CC
* ** *
17895338 CCGACCCCCCCGATCGTCGAAACCCCAATGTTGCCAGTCAGGTTCT-C--C---G----G-CGA-
260 CCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * *
17895391 --TGCTCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA-C
325 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* *
17895453 C-C--T-T-G---G-TC-----C---G---G---TCCG-AT-CTTAGACTGGCAATGAACTTCGT
390 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
17895493 ATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCT-AGGCCGGTCGGAGGGGC-GGATGTGC
455 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-GCCGGCCAGAGGGGCGGGATGCGC
* * * * * *
17895556 AAGCCAGGGATCGGGCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCCACCCTCAAT-CT
519 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCA
* * * * * *
17895620 GATCCGATCTTAGACTGGGAATGAATTCTGTATGCCTAAGCTAACTGACGAAACGAACGGGCGGG
584 G-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGG
* *
17895685 CGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
648 CGGGC---AG-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
17895750 AGGTGGGTTTAAGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
709 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
17895815 TAAAATGGTCCCTTAAGCCTTCACATTAAGTTTCATGGCAAGACGACTCGTTTTCTCTTTTTCAC
774 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
17895880 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCC
839 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
17895941 CCAAAATTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
17896006 CGAAGTGTACAAGATTTTTTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
17896071 CTGGCAACAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
17896136 GGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* ** * * *
17896201 CCGACCCCCCCGATCGTCGGAACCCCAATGTCGCTAGTCAGGTTCTCCGGCAATGCTCCGGCGAT
260 CCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * * * *
17896266 GGTG-CCCTAGTGAAGAAAAATGTGGCACCAGCACAAGCAC-AGGCCCAGCATGTGCTGCCGCAA
325 GGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGA-GCCCAGCATGTGCTGCCGCAA
*
17896329 CCCTCAGTCCAGTTCGTTCTTAGGCTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
388 -CC-C--T-C-G---G----T---CT--G---G---TCC-GAT-CTTAGACTGGGAATGAACTCC
* * * * *
17896394 ATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGCGC
427 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * ** * *
17896459 TCTGCCGGCCAGAGGTGCGGGATGTACAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACC
492 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC
* * * * * *
17896524 GATCTTGCTACCACAACCCTCGGTCCAATCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAA
557 GATCCTGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
17896589 GCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCA
622 GCCAACCGACGAAACGAACAGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
17896654 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTACGTGCCAATGCA
687 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * *
17896719 ATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCCTGGCAAGA
752 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
17896784 CGACTCGTTTTCTATATTTCACGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
817 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTT
* *
17896849 TTTGAAAGGAGTTTTGGCC
881 TTCGGAAGGAGTTTTGGCC
* *
17896868 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
17896933 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
17896998 CTCGCAGCAAACTTGTAAAATCTCAAATGCTTTTTGAGGGGGTGTGAGTTCTCGAGGTTTGAT-A
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
17897062 CGGGATAGGGGGCCAATATAAAGGCCAAGTACGAGAACCCATCGCACATCATGTGTGCACACCCC
196 -GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* ** * * * *
17897127 CTGCGACCCCCCAGATCACCGGAACCCCAATGCTGCCAGTCAGGTTCTCTGGCGATGCTCCGACG
260 C--CGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
* *
17897192 ATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAA
323 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * * * *
17897257 TCCTTGGTATGATCCGATGTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
388 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * *
17897322 GTATGCCTAAGTCAACCCACGAAACGAACGTGCGGACGCTCAGCTGGCCAGAGGAGCGGGATACG
453 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * ** *
17897387 CAAGCTGGGGATCGGCCGAGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCATAACCCTCATTCC
518 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCC
* * * * *
17897452 AGT-TCAATCTTAGACTGGGAATGAGCTCCGTATCCCTAACCCACCCGACGAAACGAA-A---GG
583 AGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGG
*
17897512 GCGGGCAGGCACTACGTCGGCCAGCGAGACGGGATGCGCAAGCCGTGGATCGAT-GGGTGGTAGG
647 GCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
**
17897576 TGGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
712 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
17897641 AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGATTCGTTTTCTCTTTTTCACGAT
777 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
17897706 TTTTGAAACTTTTT-CTGATTCGAGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCC
842 TTTTGAAACTTTTTGC-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
*
17897764 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
17897829 CGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
17897894 CTGGCAG-----C----AAA-CT----TG-----T-A----GAGTGAGTTCTCGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
17897935 GTGATA-GGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* * * * * * * * * *
17897999 CCGGCCTCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGATTGTCCGATGATTCTCCAACAAT
260 CCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * * * * *
17898064 GGTGCCCCGACGAAGAAAAATGTGGCACCAGTATATGCCCAAGCCCAGCATGTGCTACTGCAACC
325 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* *
17898129 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATAAACTCCGT
390 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
17898194 ATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGACAGAGGGGCGAGATGCGCA
455 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* ** * * * * *
17898259 AGCTGGGGATCAACCGGGTCCCCCTCTGCGTGCTGCTGATCATGCTGTCGCAACCCTCGGTCCGG
520 AGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAG
* * * * *
17898324 TCTGATCTTATTA-GGGGAATGAACTCCCTATACCTAAGCCAACCAACGAAACG---A-GC-GGC
585 TCTGATCTTA-GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGC
* *
17898383 ---CGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTG
649 GGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17898445 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCCTACAA
714 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * ***
17898510 TGGTCCCTTAAGCCTTCCCGTGAAGTTACATGGCAAGACGACTCGTTTTCTATTTTGCGTAATTT
779 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * *
17898575 TTAAAAGTTTTTGTGGTTCAGGATTTTTT-AAATGTTTTTCGGAAGGAGTTTTTGCC
844 TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCC
17898631 CC-AACGTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
1 CCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
17898695 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAAAGGCT
65 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
17898760 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
130 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
** * *
17898825 AGGGATA-GGGGATAATATAAGGGCCAAATACCATCACCCATCGCACATCATGTGCGCACACCCC
195 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * *
17898889 CCGGCCCACCCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTATCCGATGATGCTCCGATGAT
260 CCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * * *
17898954 GGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACC
325 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * *
17899019 CTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCAT
390 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* *
17899084 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCA
455 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * * * * **
17899149 AGCTGGGGATTGGCCGGGTCCCCCTCTACATGCTGTCGATCTTGCTACCGTAGCCCTC-GATCTG
520 AGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCA
* * * * * *
17899213 GTTTAATCTTAGACTCGGAATGAACTCCGTATGCCTAAGGCAACCGATGAAACGAGCGAGCAGGT
584 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---A-CAGGC
* *
17899278 GGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATAGATAGGGTGGTA
645 GGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
17899343 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
710 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
17899408 ACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
775 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * * * *
17899473 ATTTTTAAAACTTTTTGCGGTGCGGGATTTCTTAAAGTTTTTTTGCAAGGATTTTTGGCC
840 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
17899533 CCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
17899598 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
17899663 CTCGCAGCAAACTTGTAAAATCTCAAATG-TTTTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * ** * *
17899727 CGGGATAGGGGGCCAATATAAGCGCCAAGTATGAGAACCCATCGCACATCATGTGTGCACACCCC
195 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * * * * *
17899792 CCGCGACCCCCCAGATCATCGGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTGCGACG
259 CC-CGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
17899857 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
323 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * * * * * * *
17899922 TCCTTGTTATGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTTGACTAGGAATGAACTCC
388 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
** *
17899987 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTTGGCCAGAGGGGCGGGATGCA
453 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * *
17900052 CAAGCTGGGGATCGGCTGAGTCCCCCTCTGCGTGCT---G--CC-G-T-----AACCCTCATTCC
518 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCC
* * * * *
17900105 AGT-TCAATCTTAGACTGGGAATGAACTCCATATCCCTAACCCAACCGACGAAACGAAAAGGCGG
583 AGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGG
*
17900169 GC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
647 GCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* ** *
17900230 TGGGTTTCGGCACATCTTCATATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCAAAC
712 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
17900295 AATAGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTCTTTTTCACGAT
777 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
17900360 TTTTGAAACTTTTTTCGATTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCC
842 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
17900418 CCAAACTTGGTAGACGTGATCCTCGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
17900483 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCAAACACTTTAATGGCT
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCT
* * *
17900548 ACTGGCAACAAACCTGTAAAATCTCAAATACTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATG
130 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
17900612 AGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACTCATCGCACAACATGTGCGCACAACCC
195 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCC
* * *
17900677 CCC-AGCCCCCCCAATCTTCGGAACCCTAATGCC-CTCGGTCAGG---T-------T-CTCCGAC
259 CCCGA-CCCCCCCGATCGTCGGAACCCCAATGCCGC-CGGTCAGGTTCTCCGACGATGCTCCGAC
** * * *
17900729 GATGGTGCCCCGGTGAAGAAAAATGTGACGCCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
322 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
17900794 A-CC-C--T-TGGTCCGATC-----C-------G-A-T-C-T-TG----GACTGGGAATGAACTC
387 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* ****
17900833 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCATATAGCCAGAGGGGCGGGATGC
452 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* ** * * * * * *
17900898 ACAAGCCGGGGATCGATCGGGTCCCCTTCTGCATGTTG-TGAATCCTGCTGCCACAACCCTCGGT
517 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCG-ATCCTGCTGCCGCAACCCTCAGT
* * * * *
17900962 CCGGTCTAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAACGGGCG
581 CCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCG
* * *
17901027 GGCGGGCTGGCGGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGGCATGGATCGATAGGGT
646 GGC--G--GGC-AGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* **
17901092 GGTAGGTGGGTTTAGGCACATCTTAATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAAT
706 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
17901157 TCATACAATGGT-CCTTAAGCC-TCACATGAAGTTTCATGGCAAGACGACTCGCTTTCTATTATG
771 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
*** ** * * *
17901220 CGTAATTTTCAAAAGTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTCGCC
836 CACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
17901284 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
17901349 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
17901414 CTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGT
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
17901479 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-----
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * * *
17901537 C-A--CCCCCGATAGCCGGAACCCCGAT--AGCCGG--A---AC-CC--CAATGCTCCGTCGATG
261 CGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* * * ** * *
17901589 GTGCCTCGACAAAGAAAATTTTGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCACAACCC
326 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
** * * *
17901654 TTTGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTA
391 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * *
17901719 TGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGGCGGCCAGAGGGGTGGGATGCACAA
456 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * *
17901784 GCCGGGGATCGACTGGGTCCCCCTCTACATGCTGCCAATCCTGCTGCCACAACCCTC-GATCC-G
521 GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCAG
* *
17901847 ATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGC
585 -TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGC
* ** ** * * * * * *
17901912 AGGTGGGCACTGTGCCGGCCAGAGAGAGGGGATGCGCAGGCCATGGACCGATAGGGTCGTAGGTG
649 GGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17901977 GGTTTAGGCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
714 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
17902042 TGGTCCCTTAAGCCTTCAGGTGAAGTTTGATGGCGAGACGACTCGTTTTCCATTTTTCACGATTT
779 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * **
17902107 TTGAAACTTTTTACGATTTGGGATTTTTTAAAATTTTTTGGGAAGGAGTTTTCTCC
844 TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * *
17902163 CCAAACTTGGTTGACGTAATCCTTGTATTTTTGTTGGCATGTAAAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
17902228 CGAAGTGTACAAGATTTTGTGACCATTTG-AAATAGTGTCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
17902292 CTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* ** * *
17902357 GTGATA-GGGGCCAATATAAGCACCAAGTACCAGCATCCATCGCACATCATGTGCGTAC-CCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * ** ** * * *
17902420 TGGCCCCCCCGATCACCGGAACTGCAATGCCGTCGGTCAGGTTCTCTGATGATGCTCCGACGATG
261 CGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* * * * * * *
17902485 GTGCCTCGACGAAGAAAAATGCGGTACCAGCACATGCCCGCGCTCAGAAAGGGCTGCCGCAACCC
326 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * * *
17902550 TCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTTTGCTTAGATTGGGAATGAACTCTGTA
391 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * *
17902615 TGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGGCAGCCAGAGGGGCGGGATGTGCAA
456 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* ** * * * *
17902680 GCCGAGGATCGGTTGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACTGCAACCCTCTGTCCAGT
521 GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAGT
* * *
17902745 CTGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAAC-AAGCAGGCGGGCG
586 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA-CAGGC-GG-G
* *
17902809 AACGGGCAAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
648 --CGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
17902874 GTGGGTTTAGGCAGATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCCTA
711 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
17902939 CAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTACGA
776 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
17903004 TTTTTGAAACTTTTTGTGGTTCGTGATTTTTTAAAATTTTTTCAGAAGG-GATTTTGGCC
841 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCC
* * * *
17903063 CCAAACCTT-TTAGACATGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAAATCAGCTAAAAAC
1 CCAAA-CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
17903127 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
65 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
17903192 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATG
130 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
** * **
17903256 AGGGATAGGGGGCCAATATAAGGGCCAAGTACTGGCACCCTTCGCACATCATGACCGCACACCCC
195 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * *
17903321 CC-AGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGA
260 CCGA-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA
** ** * * * *
17903385 TGGTGCCCCGGTGAAGAGGAATGCGGCACCAACACATGCCCAAGCCCAGCATGTCCTGCCGTAAC
324 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * *
17903450 CCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTG
389 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* *
17903515 TATGCCTAAGTCAACCCAC-AAAGCGAGCCTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCA
454 TATGCCTAAGTCAACCCACGAAA-CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * ** * *
17903579 CAAGCCGGGGATCGGCCGGGTTCCCCTCTACGTGCTGCTGATCTTGCTACTACAACCCTCAATCT
518 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCC
** * *
17903644 AGTCCAATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACG---A------
583 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGG
17903700 ---GC-GG------GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
648 CGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * * *
17903755 GGGATTAGGCACATCTTCATATTTTTGCATGGCAATGACATTTTTTTGGCTTGTAAATTCATACA
713 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
17903820 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTTTTTTTCACGATT
778 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * *
17903885 TTCAAAACTTTTTAG-GGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCC
843 TTTGAAACTTTTT-GCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
17903942 CCAAACTTGGCAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
17904007 CGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCGCATTTCAGACATTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
17904072 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGAGTGTGAGTTCTCGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * **
17904136 GGGATAAGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGACCGCACACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * ** * * * * **
17904201 CCAGCCCCCTCGATCACCTGAACCGCAATGCCGCCGGTGAGGTTCCCCGACGATGCTCCGGTGAT
261 CGA-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
** * * *
17904266 GGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCGGCATGGGCTGCCGCAACC
325 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * *
17904331 CTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGT
390 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
** * * *
17904396 ATGCCTAAGTTTACCCACGAAACAAGCGTGCGGGCGCTCAGGCGGCCAGAGGGGCGGGATGCACA
455 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * *
17904461 AGCCGGGGATCGGCCGAGTCCCCCTTTACGTGCTGTCGATCCTGCTGCCGCAAACCTCAGTCCGG
520 AGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAG
** *
17904526 TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AAGCGGGCGGAC
585 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA-C---AGG-C
* * *
17904590 GGGCGGGC-GTGCACTACGCCGGCCAGA-AGACGGGATGCGCAAGTCGTAGATCGATAGGGTGGT
645 GGGCGGGCAG-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
17904653 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCC
709 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
17904718 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGATGACTCGTTTTCTATTTTTCAC
774 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
17904783 GATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAACTTTTTCGGAAGGGGTTTTGGCC
839 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
17904844 CCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
17904908 CGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAAACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
17904973 CTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAGGGGTATGAGTTCTCGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * * **
17905038 GAGATAGAGGGCCAATATAAGAGCCAAGTACCAGCACCCATCCCACATCATGACCGCACACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * *
17905103 CGGCCCCCTCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTC-CCTGGCGATGCTCC-AGTGA
261 CGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GACGATGCTCCGA-CGA
* * * * * * *
17905166 TGGTGCTCCGACGAAGAAAAATGTGACACCAGTACATGCTCGAGCCC-GACATGGGCTGCTGCAA
324 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG-CATGTGCTGCCGCAA
* * * * * *
17905230 CCCTCAGTCTGGTCTGTTCTTAGACTGGGAATGAACTTCGTATGCTTAAACTAGGAATGAACTCC
388 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * *
17905295 GTATGCCTAAGTCAACCCACGAAACGAACGTGCGTGCGCTCAGCCGGCTAGAGAGGCGGGATGCA
453 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* *** * * *
17905360 CAAGTCGGGGATCAATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCC
518 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCC
* * * ** *
17905425 GGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAC-AAGTGGGCGA
583 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA-CAGGCGG
* * * *
17905489 GCAGGGCGGGCACTACGTGGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATGGGGTGGTGG
647 GC-GGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* ** * * * * *
17905554 GTGGGTTTAGGCATATCTAAATATTTCTGCATGCCAAGGTCATTTTTACGGCTTGTAATTTCATA
711 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
17905619 CAATGGTCCCTTAAACCTTCACGTGAAGTTTCATAGCAAGATGACTCATTTTCTATTTTTCACGA
776 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
17905684 TTTTTGAAACTTTTTACGGTTCGAGAATTTTTAAAATTTTTTCGGAAGGAGTTTTGG-C
841 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
*
17905742 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
17905807 CGAACTGTACATGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
17905872 CTGGCAGCAAACCTGTAAATTCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGCTGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
17905937 GGGATAGGGGCCCAATATAAGGGCCAAGTACCCGCACCCATCGCACATCATGGGCGCACACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* *
17906002 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAAG-T-T----C--T--T-CGACGATG
261 CGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* * * * * * * *
17906056 GTGCCCGGGCGAAGAAAAATGTGGTACCAACACATGCCCGAGCCTAGCATGTGCTACCGTAACCC
326 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
** * *
17906121 TCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAGC-GGGAATGAACTCCAT
391 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-CTGGGAATGAACTCCGT
* * * *
17906185 ATGCCTAAGTC-ACCTACAAAACGAGCGTGCGGGCGCTCAGCTGGCCAAAGGGGCGGGATGCGCA
455 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * *
17906249 AGGCGGGGATCGACCGGGTCCCCCTCTGTGTGATGTCGATCCTGCTACCGCAACCTTCAGTCCAG
520 AGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAG
* * * * *
17906314 TCCGATCTTAGACAGGGAATGAACTCAGTATGCCTATGCCAACCGACGAAAC-AAGCGGGCGGGC
585 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA-CAGGCGGGC
* * * * * * * *
17906378 GGGCGGGCACTAC-ACTGACCAGAGAGACAGGATGCGTAAGTCGTGAATCGATAGAGTGGTAGGT
649 GGGCAGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
17906442 GGGTTTAGGCACATCTTCATATTTCTGCGTACCAATGCCATTTTTATGGCTTGTAAATTCATACA
713 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
17906507 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACAATT
778 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* *
17906572 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCC
843 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * *
17906629 CCAAACCTGGTAGACCTGATCCTTGTATTTTTCTTGGTATGCACAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
17906694 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
17906759 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * * *
17906824 GGGATAAGGGGCCAATCTAAGAGCCAAGTACCAGCACCCATCGCACATAAAGTGCGCACA-CCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * *
17906888 CGACCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATG
261 CGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* * * * *
17906953 GTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCTCGAG-CCAGGCATGTGGTGCTGCAACC
326 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA-GCATGTGCTGCCGCAACC
* * * *
17907017 CTTGGTATGGTCCGATCTTAGACTGAGAGTGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
390 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* *
17907082 ATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCA
455 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * ** * * ** *
17907147 AGCCAGGGATCGGTCGGGTCCCCTTCCGTATGTTGCCAATCCTGCAACCGTAACCCTCAGTCCAG
520 AGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAG
* * * * *
17907212 TTTGATCTTAGACTAGAAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAACAGGCGGACG
585 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGCG
* * * * * * *
17907277 GGCAGGCATTACATCGGCCAGAGGGACCGAATGCGCAAGTCGTGGATCGTTAGGGTGGTAGGTGG
650 GGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
17907342 GTTTAGGCACATCTTCA-ATTTCTGTGTGCCAATGCCATTTTGATGGCTTCTAAATTCATACAAT
715 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
17907406 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGGCTCGTTTTCTATTTGTCACGATTTT
780 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* *
17907471 TGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-C
845 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * *
17907525 CCAAGCTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAAT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
17907590 TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
17907655 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
17907720 GGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGTGCACACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
** * * * * * *
17907785 C-AAGCCCCCGATCGTCGGAACCCCAATGCCGCCAGTTAGTTTTTTCGACGATGCTCCGACAATG
261 CGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* * * *
17907849 GTGCCCCGACGAAGAAAAATACAGCACCAGGACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
326 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
** * *
17907914 TCAATCCGGT-CAAGTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
391 TCGGTCTGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
17907978 ATGCCTAAGTCAACCCACGAAACGAACGTTCGGGTGCTCAGCCGGCCAGAGTGGCGGGATGCGTA
455 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * * * *
17908043 AGCCGAGAATTGGCCGGGTCCTCCTCTGCATG-TTCTCGATCTTGCTGCCGGAACCCTCAATCCA
520 AGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC-CGATCCTGCTGCCGCAACCCTCAGTCCA
* * *
17908107 GTCTGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAACCAACCGACGAAATGAACAGGCGGGC
584 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGC
* ** * *
17908172 --G--GGCACTACGCCGATCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGCTGGTAGGTG
649 GGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * **
17908233 AGTTCAGGCACATCTTCATATTTATGAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
714 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
17908298 TGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
779 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* *
17908363 TTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTGTCGGAAGGAGTTTTGGCC
844 TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
** * * *
17908419 CCAAACTTTTTAGACATGATCCTTGTAGTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
17908484 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
17908549 CTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTATGGGGGTGTGGGTTCTCGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
17908614 GGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* ** *
17908679 CGACCCCCTCGATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTCC-AGTGATGCTCCGACGAT
261 CGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGAT
* * * * * *
17908743 GGTGCCTCGGCGAAGAAAAATGCAGCACCAGTACATGCCCGAGCCTAGCATGTGCTGCCGTAACC
325 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * * *
17908808 CACAGTCTGGTCCAATCATAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCAT
390 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
** * * *
17908873 ATGCCTAAGTCAACCCGTGAAACGAGTGTACGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCA
455 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* ** * * * * **
17908938 AGCCAGGGATCGGTTGGGTCCCCCTCTGTGTGCTGCCGATCTTGCTGCCACAACTCTTGGTCCAG
520 AGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAG
* * *
17909003 TCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACG---A-GCGGGCG
585 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGCG
* * * *
17909064 GGCAGGCACTACGCCGGTCAGAGAGACGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGG
650 GGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
17909129 GTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATATTTATGGCTTGTAAATTCATACAAT
715 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
17909194 GGTCCCTTAAGCATTCACGTGAAGTTTTATGGCAGGACGACTCGTTTTCTATTTTTCATGATTTT
780 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * **
17909259 TGAAAC-TTTTACGGTTCAGGATTTTTTAAAATCTTTTCGGAAGGAGTTTTGGAT
845 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * *
17909313 CCAAACTTGGTAAAAGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAACACATTCAGCAAAAAA
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-A-ATTCAGCTAAAAA
* * * * *
17909378 CTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAA-AGTCCCCATTTCAAACACTTTAATGGG
64 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
17909442 TACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
129 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
17909507 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
194 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * *
17909572 CTCCAGGCCCCCCCGATCGTCGGAACCCCAATGTCACCGGTCAGTTTCTTCGACGATGCTCC-AG
259 C-CC-GACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-
* * ** *
17909636 CAATGGTGCCTCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
321 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
17909701 AACCCTCGATCTGGTCGGGTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
386 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
** * *
17909766 CCGTATGCCTAAGTCAACCCACGAAACGAATGTTCGGGTGCTCAGCCGGCCAGAGGGGCGGGATG
451 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * * * * *
17909831 CGTAAGCCGAGAATTGGCCGGGTCCTCCTCTGCATG-TTCTCGATCTTGCTGCCGGAACCCTCAA
516 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC-CGATCCTGCTGCCGCAACCCTCAG
* * *
17909895 TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAACCAACCGACGAAATGAACAGGC
580 TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGC
* ** * *
17909960 GGGC--G--GGCACTACGCCGATCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGCTGGTA
645 GGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * **
17910021 GGTGAGTTCAGGCACATCTTCATATTTATGAATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
710 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
17910086 ACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
775 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
17910151 ATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCC
840 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* **
17910211 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGTGTGCAC-AAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * *
17910275 CAAAGTGTACAAGATTTTGTGACCATTTGCAAAAATTGTCCCCATTTCAGACAATTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
17910340 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGGGTTCTCGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
17910405 GGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
** * **
17910470 CGACCCCTTCGATCG-CAGGAACCCCAATGCCGTCGGTCAGGTT-T-------T--T-CGGTGAT
261 CGACCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * * *
17910523 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATTCCCGAGCCCAGCATGCGCTGCCGTAACC
325 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * *
17910588 CTCGGTCGGGTCCGATCTTAGACTGGGAATCAATTTCATATGCTTAGACTGGGAATGAACTCCGT
390 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* ** * *
17910653 ATGCCTAAGCCAACTGACGAAACGAACGGGCGGGCG
455 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
17910689 GTCGGGCGGG
Statistics
Matches: 13638, Mismatches: 1638, Indels: 692
0.85 0.10 0.04
Matches are distributed among these distances:
847 105 0.01
849 1 0.00
851 3 0.00
852 3 0.00
853 4 0.00
854 3 0.00
855 19 0.00
856 63 0.00
857 2 0.00
858 2 0.00
859 66 0.00
860 2 0.00
861 8 0.00
862 2 0.00
863 622 0.05
864 70 0.01
865 58 0.00
866 332 0.02
867 307 0.02
868 127 0.01
869 6 0.00
870 312 0.02
871 50 0.00
872 35 0.00
873 70 0.01
874 5 0.00
875 2 0.00
876 8 0.00
877 217 0.02
878 115 0.01
879 631 0.05
880 329 0.02
881 9 0.00
882 193 0.01
883 150 0.01
884 36 0.00
885 411 0.03
886 335 0.02
887 397 0.03
888 128 0.01
889 15 0.00
890 379 0.03
891 83 0.01
892 66 0.00
893 215 0.02
894 364 0.03
895 695 0.05
896 1202 0.09
897 954 0.07
898 408 0.03
899 465 0.03
900 337 0.02
901 590 0.04
902 1246 0.09
903 93 0.01
904 208 0.02
905 297 0.02
910 1 0.00
912 2 0.00
913 1 0.00
915 1 0.00
918 1 0.00
919 1 0.00
921 1 0.00
922 1 0.00
924 2 0.00
926 212 0.02
927 260 0.02
928 109 0.01
929 72 0.01
930 118 0.01
931 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACAGGCGGGCGG
GCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
Found at i:17907958 original size:26 final size:26
Alignment explanation
Indices: 17907929--17907981 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17907919 CCGGTCAAGT
17907929 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17907955 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17907981 C
1 C
17907982 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17908863 original size:26 final size:26
Alignment explanation
Indices: 17908826--17908876 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17908816 GGTCCAATCA
*
17908826 TAGACTGAGAATGAACTCCGTATGCT
1 TAGACTGAGAATGAACTCCATATGCT
*
17908852 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGAGAATGAACTCCATATGC
17908877 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCATATGCT
Found at i:17909757 original size:26 final size:26
Alignment explanation
Indices: 17909721--17909773 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17909711 CTGGTCGGGT
17909721 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17909747 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17909773 C
1 C
17909774 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17910655 original size:26 final size:26
Alignment explanation
Indices: 17910604--17910656 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17910594 CGGGTCCGAT
* *
17910604 CTTAGACTGGGAATCAATTTCATATG
1 CTTAGACTGGGAATCAACTCCATATG
* *
17910630 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
17910656 C
1 C
17910657 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:17912277 original size:26 final size:26
Alignment explanation
Indices: 17912239--17912289 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17912229 AATCCGATCT
* *
17912239 TAGACTGGGAATGAACTCGGTATGCG
1 TAGACTGGAAATGAACTCCGTATGCG
17912265 TAGACTGGAAATGAACTCCGTATGC
1 TAGACTGGAAATGAACTCCGTATGC
17912290 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCG
Found at i:17912425 original size:899 final size:892
Alignment explanation
Indices: 17910630--17914284 Score: 4948
Period size: 899 Copynumber: 4.1 Consensus size: 892
17910620 ATTTCATATG
* * *
17910630 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGGGCGGTCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AA---GCAGGCGGGCGGG
* * * * *
17910695 CGGGCGCTACGTCGACTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
17910760 TTAGGCACATCCTCATATTTCTACATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
17910825 TCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTG
* *
17910890 AAACTTTTT-CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGCAGTTTTGGCCCCAAACTTGGTA
257 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
17910954 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATATTCAGTTAAAAACTTGAAGTGTACAAG
322 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
17911019 ATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTTAGACATTTTAATGGCTACTGGCAGCAAACC
387 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
17911084 TCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAGGGGGCC
452 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
17911149 AATATAAGGGCCACGTACCAGCACCAATCGCACATCATGTTCGCACA--CCCCCCCGATCGCCGA
517 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACGCCCCCCCGATCGCCGA
* *
17911212 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTG-TGATGGTGCCCCGGTGAAGAAAA
582 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GACGATGGTGCCCCGATGAAGAAAA
* * * ** * *
17911276 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTTGGTTCGGTCCAATGTT
646 ATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCACAACCCTCGGTCCAATCCGATCTT
*
17911341 AGACTGGGAATGAACTTCGTATGCTCT-GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
711 AGACTGGGAATGAACTCCGTATGCT-TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * * * *
17911405 GAAATGAGCGTACGAGCGGTCAGCCAGCTAGAA-GGGTGGGATGCGTAAGCCGAGGATCGATCGA
775 GAAACGAGCGTGCGGGCGCTCAGCCGGCCA-AAGGGGCGGGATGCGCAAGCCGAGGATCGATCGG
* * * * * *
17911469 GTCCCCCTCTACGTGCTGCCGATCCTGCTACCGTAACCCTTGGTCTGGTCTGAT
839 GTCCCCCTCTACATGCTGACGATCCTACTACCGCAACCCTTGGTCCGGTCCGAT
*
17911523 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCAGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGGCGGGCGGG
* ** *
17911588 CACTGCAACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
17911653 GCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
17911718 TTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC
* *
17911783 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTGCCCCAAACTTGGTAGACA
261 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
*
17911848 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
17911913 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGCTACTGGTAGCAAACCTGT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
17911978 AAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTTC-AGGTTTGATGAGGGATAGGGGGCCAA
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAA
* **
17912042 TATAAGGGCCAAGTACCAGCACCCATTGCACATCCGGTGCGCACACCCCCCGGCCCCCCCGATCG
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----C-GCCCCCCCGATCG
* * * *
17912107 CCGAAACCCCAATGTCG-CTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGACGAAG
578 CCGAAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAG
*
17912171 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAATCCGA
642 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCACAACCCTCGGTCCAATCCGA
* * *
17912236 TCTTAGACTGGGAATGAACTCGGTATGCGTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACC
707 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
17912301 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCGCAAGTCGGGGATCGACC
772 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGATC
* * * * ** *
17912366 GGGTCCCCCTCTGCGTGCTGACGATCCTGCTGCCGCAACCCTTTATCCAGTCCGAT
837 GGGTCCCCCTCTACATGCTGACGATCCTACTACCGCAACCCTTGGTCCGGTCCGAT
* * * * * *
17912422 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGTGAGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGGCGGGCGGG
*
17912487 CACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
17912552 GCACATCTTCATATTTCTGCATGCCAGTGCCATTTTCATGGCTTGTAAATTCATACAATGGTCTC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
17912617 TTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTTATAATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC
* * * * * *
17912682 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCGCAGACTTGGTGGACG
261 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
*
17912747 TGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
17912812 TTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* **
17912877 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGGGGTGAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
17912942 ATAAGGGCCAAGTGCCAGCAGCCATCGCACATCATGTGCGCACACACCCCCCCGATCGTCGGAAC
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACGCCCCCCCGATCGCCGAAAC
* ** *
17913007 CCCAATGCC-TCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATG
585 CCCAATGCCGT-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATG
* * * * **
17913071 CGACACTAGCACATGCCTGAGCCCAG-ATATGCTATCGTAACCCTCGATCTGGTCTGATCTTAGA
649 CGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCACAA-CC-C--TC--G---G-TC-----
* * *
17913135 CTGGGAATGAACTCCATATGCTTAGACTGGTAATGAACTCCGTATGCTTAGACTAGGAATGAACT
699 C--------AA-TCC-GAT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* ** * **
17913200 CTGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGGCGCTCAGCCGGCCGGAGGGGCGGGATG
753 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATG
* * * * * ** * *
17913265 CGCAAGCCAAGGATCGGTCGGCTCCCCCTCTGCATGCTGTCGATCCTACTGTCGTAACCCTCGGT
818 CGCAAGCCGAGGATCGATCGGGTCCCCCTCTACATGCTGACGATCCTACTACCGCAACCCTTGGT
17913330 CCGGTCCGAT
883 CCGGTCCGAT
* * * * * *
17913340 CTTAGACTGGGAATGAACGCCATATGCCTAAGCCAACTGATG-AA-ATG-A-GCGAGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGGCGGGCGGG
* *
17913401 CACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
17913466 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* **
17913531 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC
* ** *
17913596 TTTTTGTGGTTTAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACA
261 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
* * * * *
17913661 TGATCCTTTTATTTTTGTTGGCTTGCATAAAAAATTCAGCTAAAAACTCAAAGTGTACAAAATTT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
17913726 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAACAAACCTGTA
391 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
17913791 AAATCTCAAATGCTCTTTAAAGGGGTGTGAGATCTCGAGGTTTGGTGAGGGATAGGGGGCCAATA
456 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
17913856 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACCCCTGGCCCTCCCGA
521 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA----CA---C--GCCCCCCCGA
* *
17913921 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGATGA
575 TCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGA
** * * * ***
17913986 AGAAAAATGTTGCACCAGCACATG-CTCCAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
640 AGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTACCACAACCCTCGGTCCAATC
17914050 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
704 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
17914115 ACCCACGAAACGAGCGTGCGGGCGGTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
769 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCG
* * * * * **
17914180 GTCGGGTACCCTTCTACATGCT-ACCGATCCTACTACCGCAACTCTTGGTTCGGTCTAAT
834 ATCGGGTCCCCCTCTACATGCTGA-CGATCCTACTACCGCAACCCTTGGTCCGGTCCGAT
17914239 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
17914285 CAGCGGACGG
Statistics
Matches: 2433, Mismatches: 267, Indels: 116
0.86 0.09 0.04
Matches are distributed among these distances:
889 198 0.08
890 86 0.04
891 185 0.08
892 13 0.01
893 142 0.06
894 3 0.00
896 2 0.00
898 8 0.00
899 989 0.41
900 10 0.00
901 4 0.00
902 2 0.00
907 1 0.00
913 193 0.08
914 271 0.11
915 6 0.00
916 5 0.00
917 4 0.00
918 197 0.08
919 3 0.00
921 2 0.00
922 1 0.00
923 3 0.00
924 94 0.04
925 11 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC
TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACGCCCCCCCGATCGCCGAAACC
CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCG
GCACCAGCACATGCCTGAGCCCAGCATGTGCTACCACAACCCTCGGTCCAATCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCC
TCTACATGCTGACGATCCTACTACCGCAACCCTTGGTCCGGTCCGAT
Found at i:17913205 original size:26 final size:25
Alignment explanation
Indices: 17913129--17913207 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
17913119 CTGGTCTGAT
*
17913129 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACT-GGAATGAACTCCGTATG
17913155 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGG-AATGAACTCCGTATG
*
17913181 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
17913207 C
1 C
17913208 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.04
26 45 0.92
27 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:17914083 original size:26 final size:26
Alignment explanation
Indices: 17914054--17914106 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17914044 CTGGTCCGAT
17914054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17914080 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17914106 C
1 C
17914107 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17914790 original size:26 final size:26
Alignment explanation
Indices: 17914761--17914813 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17914751 CTGGTCCGAT
17914761 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17914787 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17914813 C
1 C
17914814 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17915702 original size:26 final size:26
Alignment explanation
Indices: 17915666--17915718 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17915656 CCGGTTTGAT
17915666 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17915692 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17915718 C
1 C
17915719 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17916105 original size:900 final size:898
Alignment explanation
Indices: 17914309--17920915 Score: 8303
Period size: 881 Copynumber: 7.4 Consensus size: 898
17914299 ACCCCCCAAA
* * ** *
17914309 TTTTTGCGGTTTGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGCCCCCAAACTTGGTAGACGT
1 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * * *
17914374 GATCCTTGTATTTTTCTTGGCATGCACAAGAAAATTCAGCTCAAAACTTGAAGTGTACAAGATTT
66 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
17914439 TGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTA
131 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
17914503 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
196 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * *
17914568 TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACA-CCCCCCGGCCCTCTCGATCAC
261 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCAT
* * * * *
17914632 CGGAAACCCAATACCGTCGATTAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC-AGCGAAGA
326 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT-CAGCGATGGTGCCCCGA-CGAAGA
* * * *
17914696 AAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACTGCAACCCTCGGTCTGGTCCGAT
389 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
*
17914761 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATTGAACTCCGTATGCCTAAGTCAACCC
454 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CC
* * * * *
17914826 CACGGAACGAGCGTGAGAGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATGGGTC
518 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * * * * *
17914891 GGGTCCACCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTTTGGTCCTAACTTAGACTG
583 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * * * * *
17914956 GGAATGAACTTCGTATGCCTAAGGCAACCGACGAAACGCGCTGACGGGCAGGCAGGCGGGCATTA
648 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG--GGCA--CGGGCACTA
* * * * * *
17915021 CGTCGACTAGAGAGACGGGATGCCCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTCTAGGCACA
709 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
17915086 TCTTCATATTTCTACATGCCAATGCCATTTTTACGGCCTGTAAATTCACACAATGGTCCCTTAAG
774 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
17915151 CCTTCACATGAAGTTTCATGGCAAGACCG-CTCGTTTTCTATTTTTCATGATTTTCAAAAC
839 CCTTCACGTGAAGTTTCATGGCAAGA-CGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
* * * *
17915211 TTTTTGCGGTTCGACATTTTTTAAAATTTTTTTGAAGGATTTTTGGCCCTAAATTTGGTAGACGT
1 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
17915276 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTT
66 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
17915341 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGTAGCAAACCTGTA
131 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
17915406 AAATTTCAAATGCTCTTTAAGGGGGAT-TGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAAT
196 AAATCTCAAATGCTCTTTAAGGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
17915470 AGAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACACTCCCCCCTGCCACCACGATC
260 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCCGATC
* *
17915535 ATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCAATGCTCTAGCGATGGTGCCCCGACGAAG
324 ATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC-AGCGATGGTGCCCCGACGAAG
* * ** * *
17915600 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCACAACCCTCTATCCGGTTTGA
388 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGA
*
17915665 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
453 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
17915730 CACGAAACTAGCGTGCGGGTGCTCAGCCGGCCAAAGCGGTGGGATGCGCAAGCCGGGGATCGGCC
518 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * * * *
17915795 AGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCCCAACCGTCGGTTTGGTCCGATCTTAGACTG
583 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * * * *
17915860 GGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGACGGGTGCACGGGCACTACACC
648 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGCACGGGCACTACGCC
* *
17915925 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACAGCTT
713 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
17915990 CATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
778 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
17916055 CACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTCAAAAC
843 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
* * * * *
17916111 TTTTTACGGTTCGAGATTTTTTAAAA-TTTTTCGACAGGAGTTTTGACCCGAAACGTGGTAGACG
1 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGA-AGGAGTTTTGGCCCCAAACTTGGTAGACG
* ** *
17916175 TGATCCTTGTATTTTTTTTGGCATGCACAAGCAAATTCAGCTAAAAACTCGAAGCGTACAAGATT
65 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
17916240 TTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTATTGGTAGCAAACCTGT
130 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
17916305 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAAT
195 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
17916370 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCA
260 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCA
* * *
17916435 TCGAAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTC--CGA--------C-A--AAGAA
325 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGCGATGGTGCCCCGACGAAGAA
* * * * *
17916487 AAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGTTGCTGCAACCCTCTGTCTGATCTGATC
390 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATC
* * * * *
17916552 TTAGACTGGAAATGAACTCCGTATGCTTATACTGGGAATAAACCCCATATGCCTAAGTCAACCCA
455 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
17916617 CGGAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAAG-CGAGGATCGGTCAG
520 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* * * ** * * * *
17916681 GTCCCCCTCAGCGTGTTGCCAATCCTGCTATCGTAACCCTCAGTCTGGTTCGATCTTAGTCTGGG
585 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * * * *
17916746 AATGAACTCTGTATGCCTAAGCCAACCAACGAAAGGAGCGAGGCGGGTGGGCGTGCGGGCATTAC
650 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GGC-GG-GGGC--ACGGGCACTAC
* * *
17916811 GCCAGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGAACAT
710 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
17916876 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
775 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
17916941 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGACAC
840 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
* * * * * * * *
17917000 TTCTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGCATTTTTGGCCCCAGAGTTGGTAGATG
1 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT-GAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
17917065 GGATCCTTGTATTTTTGTTGGCCTGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAATATT
65 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * * *
17917130 TTGTGACCATTTGAAAAAAGTGTCCCTATTTCAAACATTTTAATAGCTACTGGTAGCAAACCTGT
130 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
17917195 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT-ATGGGATAGGGGGCCAA
195 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAA
* * ** *
17917259 TATAAGGGCGAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCAAG--CCCCCGACC
259 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
* *
17917321 GAT-GGAACCCCAATGCCATCGGTCAGGTTCT-C--CG--G----G-GATGCTGCCCCGACGAAG
324 -ATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGCGATGGTGCCCCGACGAAG
* ** * *
17917375 AAAAATGTGGCACCAGCACATTACCGAGCCCAGCATGTGCTGCCGCAACCATCGGTCCGGTCTGA
388 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGA
* * ** * *
17917440 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAATAGGAATGAACTCTATCTACCTAAGTCAACC
453 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
17917505 CACGAAATGAGCGTCCGAGCGCTCAACCGGCCAGAGTGGCGGGATGCGCAAGTCGGGGATCGGTC
518 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * * * * * **
17917570 GGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCGCAACCTTCAGTC-GATTTGATCTTAGACTG
583 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * * *
17917634 GGAATAAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGGC--GGG--CGGGCACTACGCT
648 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGCACGGGCACTACGCC
* *
17917695 GGCCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
713 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * * *
17917760 AATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGGCTT
778 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
17917825 CACGTGAAGTTTCATGGCAAGACGACTCGTCTTCTATTTTTCATGATTTTCGAAAC
843 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
* * * *
17917881 TTTTTGTGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAGCTTGGTAGACG
1 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT-GAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
17917946 TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTC-AATGTGTCCAAGAT
65 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACAAGAT
*
17918010 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTG
129 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
17918075 TAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAA
194 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
17918139 CATAAGGGCCAAGTACCAGCTCCCATCGCACATCATGTGCGCACAGCCCACCCCCCGACCCCCTC
259 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---C-CCCCCCGGCCCCCCC
* * * * * * * *
17918204 GATC-GCTAGAACCCCAACGTCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGA
320 GATCATC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAG-CGATGGTGCCCCGA
* * * * * * *
17918268 GGAAGAAAAATGCGGCAACAGCACATTCCCAAGCCCAGCATGTGCTGTCGCAACCCTCGATCTGA
383 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* * * * * *
17918333 TCCGATCTTAGATTGGGAAAGAACTCCATATGCTTAGACTGCGAATGAGCTCCGTATGCCTAAGT
448 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
17918398 CAACCCACAAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGAGGAT
513 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* ** * * * ** * **
17918463 CGGTTGGGTCCCCCTCTGTATGCTACCAATCTTATTGCCACAACCCTCGGTCTGGTTTGATCTTA
578 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTA
* * *
17918528 GACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAGGAAACGAGCGGGCAGGCGGG--CGGGCT
643 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-GGGCACGGGCA
* * *
17918591 CTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAAGGTGGTACGTGGGTTTAGGC
706 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
17918656 ACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTT
771 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
17918721 AAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
836 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
** *
17918784 TTTTTGCGGTTCGAGATTTTTTAAAATTTCTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATG
1 TTTTTGCGGTTCGAGATTTTTTAAAATTT-TTTTGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * *
17918849 TAATCCTTGTATTTTTGTTGGCATCCAAAAAAAAATTCAGCTAGAAACTCGAAGTGTACAATATT
65 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
17918914 TTGTAACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
130 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
17918979 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
195 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
17919044 ATAAGGGCCAAGTACCAGTC-CTCATCGCACATCTTGTGCGCATACCGCCCCCGGCCCCCCTGAT
260 ATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCCGAT
* * * * * **
17919108 CGTCGGAACCCCAATGCCG-CAGGTCAGATTCTCCGGTGATGCTCCGATGATGGTGCCCCGGTGA
323 CATCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCAG-CGATGGTGCCCCGACGA
** * * * * * *
17919172 AGAAAAATATGGCACCAACACATGCTCGAGCCCAGCATGTGCAGCCACAACCCTTGGTCTGGTCC
386 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT
* * *
17919237 GATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAACCCCATATGCCTAAGTCAA
451 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
17919302 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCATAGGGGTGGGATGCGCAAGTCGGGGATCGA
516 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* ** ** * * * * *
17919367 TCGGGTCCCCCTCTGTGTGCTTTCGATCCTATTGCAGTAACCCTCGGTCCGGACTGATCTTAGAC
581 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGAC
* * * * * * * * *
17919432 TGGGAATGAATTTCATATGCCTAAGGCAATCGACGAAACGAGCGGACGGACGAGCAGGTGAGCGC
646 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG--GGGCACG-G-GCAC
* * * * * * *
17919497 TACGCTGACTAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTTGGTGGGTTCAGGCA
707 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
17919562 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTAGTCCCTTA
772 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
17919627 AGCCTTCACGTGAAGTTTGATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
837 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
* *
17919689 TTTTTGCGGCTTAGA-ATGTTTTAAAA------T-------TTTT----------TTGGTAGACG
1 TTTTTGCGG-TTCGAGATTTTTTAAAATTTTTTTGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
17919730 TGATCCTTGTACTTTTGTTGTG-ATGCACAAAAATATTCAGCTAAAAACTCGAAGCGTACAAGAT
65 TGATCCTTGTATTTTTGTTG-GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
17919794 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGACAGCAAACCTG
129 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * **
17919859 TAAAATCTTAAATGCTCTTTAAAGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGAACAA
194 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
17919924 TATAAGGGCTAAGTACCAGCACCCATCGCACATCAAGTGCGCACACCCCCTCGGCCCCCCCAATC
259 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
* * * * * * * * **
17919989 GTTGGAACCCTAATACCGTCGGTCAGGTTCTTCGACGATGCTCCGGTGATGGTAACCCGACGAAG
324 ATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT-CAGCGATGGTGCCCCGACGAAG
* * * * *
17920054 AAAAATGCGGCACCAGCAAATGCCCGAGCCTAGCATGTGCTACCACAACCCTCGATCTGGTCTGA
388 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGA
* *
17920119 TCTTAGACTGGGAATGAACTCCGTATTCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACC
453 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * ** **
17920184 CACGAAATGAGCGTGCGGGTGCCCAGCCAGCCAGAGGGGCGGGATGCGTAAGCCGACGATCGACC
518 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * * * *
17920249 AGAT--CCCT-T---T-CT----A-CGTGCTGCTGCAACCCTCGGTCCT-ATCCGATCTTAGACT
583 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACT
* * *
17920301 GAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCGGGGGGG
647 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-GGGC--AC----GGG
* * * **
17920366 CACTACGCCTGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATTTGGTGGTAGGTGGGTTTAG
704 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
***
17920431 GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
769 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
17920496 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
834 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
* * *
17920561 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCAAAACTTGGTAGACG
1 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTT-TGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * *
17920626 TGATCCTTGTAGTTTTGTTGGCATGCACAACAATATTCAGCTAAAAAGCT-GAAGCGTACAACAT
65 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-CTCGAAGTGTACAAGAT
* * * **
17920690 TTTGTGACCATTTGAAAAAAGTTTCCCCATTTCATACACTTTAATTGCTACTGATAGCAAACCTG
129 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
17920755 TAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAA
194 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
17920820 TATAAAGGCCAAGAACCAGCACCAATTGCACATCATGTGCGCACA-CCCCCTGGCCCCCCCGATC
259 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
*
17920884 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
324 ATCGGAACCCCAATGCCGTCGGTCAGGTTCTC
17920916 TGACTGGGTC
Statistics
Matches: 4972, Mismatches: 623, Indels: 227
0.85 0.11 0.04
Matches are distributed among these distances:
868 70 0.01
869 4 0.00
871 4 0.00
872 197 0.04
873 3 0.00
874 2 0.00
877 1 0.00
878 4 0.00
879 2 0.00
880 315 0.06
881 602 0.12
882 2 0.00
884 101 0.02
885 174 0.03
886 7 0.00
887 68 0.01
888 5 0.00
889 221 0.04
890 454 0.09
891 55 0.01
892 1 0.00
895 45 0.01
896 229 0.05
897 2 0.00
898 217 0.04
899 120 0.02
900 456 0.09
901 326 0.07
902 168 0.03
903 493 0.10
904 241 0.05
905 378 0.08
906 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCAT
CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCAGCGATGGTGCCCCGACGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGGCACGGGCACTACGCCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
Found at i:17919276 original size:26 final size:26
Alignment explanation
Indices: 17919240--17919292 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17919230 CTGGTCCGAT
17919240 CTTAGACTGGGAATGAACTCCC-TATG
1 CTTAGACTGGGAATGAAC-CCCATATG
17919266 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
17919292 C
1 C
17919293 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:17920156 original size:26 final size:26
Alignment explanation
Indices: 17920119--17920170 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17920109 TCTGGTCTGA
17920119 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
17920145 TCTTAGATTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
17920171 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:17921713 original size:26 final size:26
Alignment explanation
Indices: 17921684--17921733 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17921674 CTGGTCCGAT
17921684 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17921710 CTTAGACTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17921734 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17924287 original size:26 final size:26
Alignment explanation
Indices: 17924258--17924310 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17924248 CTGGTCCGAT
17924258 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17924284 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17924310 C
1 C
17924311 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17925007 original size:901 final size:894
Alignment explanation
Indices: 17922911--17925062 Score: 3172
Period size: 894 Copynumber: 2.4 Consensus size: 894
17922901 CACGTGAACC
*
17922911 TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
1 TTTTGCGGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
17922976 GATCCTTTTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTCGAAGTGTACAAAATTT
65 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
17923041 TGTGACCGTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
130 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
17923106 AAATCTCAAATGCTCTTTAAGGGGGTA-TGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAAT
195 AAATCTCAAATGCTCTTTAAGGGGG-AGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAAT
** ** **
17923170 ATAAGGGCCAAGTACCAGCAGGCATCGTACATCATGTGCGCACACCCCCCCACCCCCCCGATCGT
259 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * * *
17923235 CGGAACCCCAATGCCACCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTACCCCAGTGAAGAA
324 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGACGCTCCGACGATGGTACCCCAGTGAAGAA
* **
17923300 AAATGTGGCAGTAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATC
389 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATC
* * *
17923365 ATAGATTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCGGTATTCCTAAGTCAACCCA
454 ATAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * **
17923430 CGAAACGAGCGTGCGGGCGCTGAGCCGGCCAGAGGGGCGGGATGCGCAAGTAAGGGATCGGCCAG
519 CGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAACCAAGGGATCGGCCAG
* ** ** * * *
17923495 GTCCCCCTCTGCGTGCTGCTGATCCTGCTGCTGCAACACTTGGTCTAGTCTGATCTTAGACTGGG
584 GTCCCCCTCTGCGTGCTACCAATCCTGCTGCCACAACACTCGGTCCAGTCTAATCTTAGACTGGG
* * *
17923560 AATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGTGGCCACTACGCCGGCCAG
649 AATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAACGGGCGGGGGGCCACTACGCCGGCCAG
17923625 AAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
714 AAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
17923690 TCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCTTAAGCCTTCACGTGA
779 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCTTAAGCCTTCACGTGA
** *
17923755 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTTAAAACA
844 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAACA
* * * * * *
17923806 TTTTACGATTCGGGATTTCTTCAAATTTTTTCGGAAGGTGTTTTGGCCCCAGACTTGGTAGACGT
1 TTTTGCGGTTCGGGATTT-TTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * **
17923871 GATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCCGAAAACTCGAAGTGTACAAGATTT
65 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * *
17923936 TGTGACCAGTTGAAAAAAGTGTCCCGATTTTAGACAATTTAATGGCTACT-GCAGCAACCCTGTA
130 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * **
17924000 AAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGACATTTGATGAGGGATAGGGGACCAATA
195 AAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATA
* *
17924065 TAAGGGCCAAGTACCAGCACCCATCACACATCATTTGCGCACACCCCCCGGCCCCCCCAATCGTC
260 TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* * * *
17924130 GGAACCCCAATGCCGTCGGTCAGGTTCTCC-AGTGACGCTCCGACGATGGT-GCCCTGATGAAGA
325 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGACGCTCCGACGATGGTACCCCAG-TGAAGA
* *
17924193 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
388 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGAT
* *
17924258 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
453 CATAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * **
17924323 ACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGA-GGGTAGGATGCGTAACC-CGAGGATCGGTT
518 ACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAACCAAG-GGATCGGCC
* * *
17924386 GGGTCCCCCTCTGCGTGCTACCAATCTTGCTGCCACAACCCTCGGTCCAGTCTAATCTTAGACTG
582 AGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCACAACACTCGGTCCAGTCTAATCTTAGACTG
*
17924451 GGAATGAACTCCGTATGGCTAAGCCAACCGACAAAACGAGGAGGCGGGCGGGCGGGCGAGCACTA
647 GGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGA--A--CGGGCGGG-GGGC---CACTA
* * *
17924516 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGTACA
704 CGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
17924581 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAGTGGCCCCTTAAG
769 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-CCCTTAAG
* *
17924646 CCTTCACGTGAAGTTTCATGGCAATACGACT-GATTTTCTATTTTTCACAATTTTTGAAAA-T
833 CCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACAATTTTTGAAAACA
* *
17924707 TTTTGCGGTTTGGGATTTTTTAAAATTTTTCAGAAGGAGTTTT-GCCCCTAAACTTGGTAGACGT
1 TTTTGCGGTTCGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGT
*
17924771 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGCAGTGTACAAGATTT
65 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
17924836 TGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
130 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
17924901 AAATCTCAAATGCTCTTTGAGGGGGAGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG-CCAATA
195 AAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATA
*
17924965 TAAGGGCCAAGTACCAGCACCCATCACACATCATGGTGCGCACACCCCTCTGGCCCCCCCGATCG
260 TAAGGGCCAAGTACCAGCACCCATCACACATCAT-GTGCGCACACCCC-CCGGCCCCCCCGATCG
* *
17925030 CCGAAACCCCAATGCCGCCGGTCAGGGTTCTCC
323 TCGGAACCCCAATGCCGCCGGTCA-GGTTCTCC
17925063 TATGCCTAAG
Statistics
Matches: 1118, Mismatches: 119, Indels: 32
0.88 0.09 0.03
Matches are distributed among these distances:
892 1 0.00
893 114 0.10
894 329 0.29
895 157 0.14
896 5 0.00
897 8 0.01
898 3 0.00
899 5 0.00
900 180 0.16
901 212 0.19
902 96 0.09
903 8 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
TTTTGCGGTTCGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATAT
AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCG
GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGACGCTCCGACGATGGTACCCCAGTGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCAT
AGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAACCAAGGGATCGGCCAGGT
CCCCCTCTGCGTGCTACCAATCCTGCTGCCACAACACTCGGTCCAGTCTAATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACAAAACGAACGGGCGGGGGGCCACTACGCCGGCCAGAA
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAACA
Found at i:17925941 original size:26 final size:25
Alignment explanation
Indices: 17925902--17925956 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
17925892 CCGGTCCAAT
*
17925902 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
17925927 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
17925953 CTTA
1 CTTA
17925957 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 7 0.26
26 20 0.74
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:17926835 original size:26 final size:26
Alignment explanation
Indices: 17926796--17926848 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17926786 CTGGTCCGAT
*
17926796 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
17926822 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17926848 C
1 C
17926849 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17928584 original size:26 final size:26
Alignment explanation
Indices: 17928555--17928605 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17928545 CAGTCCGATC
17928555 TTAGACTGGAAATGAACTCCATATGT
1 TTAGACTGGAAATGAACTCCATATGT
* * *
17928581 TTAGACTGGCAGTGAACTCCGTATG
1 TTAGACTGGAAATGAACTCCATATG
17928606 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCATATGT
Found at i:17928765 original size:889 final size:889
Alignment explanation
Indices: 17925059--17933027 Score: 8837
Period size: 890 Copynumber: 8.9 Consensus size: 889
17925049 GGTCAGGGTT
* *
17925059 CTCC-TATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * ** * *
17925123 TGCGTAACGCCGAGGATCGGTTGGGTCCTCCTCTGCGTGCTACCAATCTTGTGCTGCCACAACCC
66 TGCGCAA-GCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATC--CTGCTGCCACAACCC
* ** * *
17925188 TCGGGTCCAGTCTAATCTTAGACTGGGAATGAAACTCCGTATGCCTAAGCCAACCGGGACAAAAC
128 TC-AGTCTGGTCTGATCTTAGACTGGGAATG-AACTCCGTATGCCTAAGCCAACC--GAC-AAAT
* * *
17925253 GAGGAGGGCGCGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGCGATGCGCAAGCCGTGG
188 GAGCA-AGCG-GGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGG-GATGCGCAAGCCGT-G
*
17925318 GATCGGATTAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTT
248 GATC-GA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* * *
17925383 TATGGCTCGTAAATTCATAAAATGGTCCCTTAAGCCTTCAC--GATTGTTTCATGGCAAGACGAC
311 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA-AGTTTCATGGCAAGACGAC
* * * * * * * * *
17925446 TCATTTTCAATTTTTTACGATTTT-GAAACTTTTTGCTGTTCGGGATTTTTTTAAAACTTTTTGG
375 TCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTTGCGGTTCGAGA-TTTTTTAAAATTTTTTTG
* * *
17925510 AAGGAGTTTTGGCCCCACAC----TAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
439 AAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
17925571 TTCATG-TAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
504 TTCA-GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
17925635 ACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTTAAATGCTCTTTAAGGGAGTGTGAGTT
568 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTT
* *
17925700 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCA
632 CTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
17925765 TGTGTGCACACCCCCCTGGCCCCACCAATCGTCGGAACCCCAA----AT--G-C----TC-CGGA
697 TGTGCGCACACCCCCC-GGCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGGC
* * * * * *
17925818 AATG-G-T-GCCCCGACGAAGAAAAATACAGCACCAGCATATGCCCGAGCCCAGCATGTGATGCC
760 GATGCGATGGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* * * * * *
17925880 GTAACCCTCGGTCCGGTCCAATCTTAGACT-GGAATGAACTCTGTATGCTTAGAGTGGGAATGAA
825 GCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * **
17925944 CTCCGTATGCTTAAGTCAACCCACGAAACGAGCTTGCGGGTGCTCAGCCGGCCAGAGGGACAAGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * *
17926009 TGCGCAAGCCGGGGATCGATCGGGTCCCCC-CTGTGTGCTGTCGATCCTACTATCGA-AACCCTT
66 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT-GCCACAACCCTC
* * ** * * * *
17926072 GGTCCGGTCTGATCTTAGACTGGGAACAAACTCCATATGCCTAAGCTAACTGACGAAT---C--G
130 AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAATGAGCAAG
* * * * * *
17926132 AGTG-GGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGAGGAGCAAGCCGTGGCTCGATAGGGT
195 CGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * * *
17926196 GGTAGGAGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAATTTTATGGCTCGTAAAT
260 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
17926261 TCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCAATTTTT
325 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * ** * **
17926326 TACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTCCAGAAGGAGTTTTGGTTC
390 CAAGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT-TTGAAGGAGTTTTTGCCC
* *
17926391 CAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTC
454 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
17926456 GAAGTGTATAAGATTTTGTGATCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTAC
519 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
17926521 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATCAA
584 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCTAGGTTTGATGAG
* ** *
17926586 GGATAGGGGGCCAATATTAGGGTGAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCC
648 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
* * * * *
17926651 TCGGCCCCCCCATCGCCGGAACCCCAATACCGTCGATCAGGTTCTCCGGTGATGCTACGGCGATG
712 -CGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CGGCGA---T---GCGAT-
** * * * ***
17926716 GTGCCCCGGTGAAGAAAAATACGGCACCAGCACATTCTCGAGCCCAGCATGTGCTGTAGCAACCC
768 G-GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
* ** * **
17926781 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTATGAATGAA
832 TCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
17926839 CTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * ** * * ** * * *
17926904 TGTC-CAAGCCGAGGATCGATCGGGTCCCGTTTTGCATGCTACCAATCCTACTGCCGCAACCCTC
66 TG-CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTC
* ** ** * * ** **
17926968 AGTCCGGTCCAATCTTAGACTAAGAATGAACTCCTTATGCCTAAGCTAACCGACGAAACAAGCGG
130 AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAATGAGCAA
* * * *
17927033 GCGGGCGGGCGGGCGTGCACTACGCCGGCCAGAGAGATGGGACGTGCAAGCCGTGGATCGATAGG
194 GCGGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
17927098 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAACGCCATTTTTGTGGCTTGTAA
258 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
* * * * * *
17927163 ATTCAGACAAGGGTCTCTTAAGCTTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTTTATTT
323 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
17927228 TTCATGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCG-GGGAG----T---
388 TTCAAGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAGGAGTTTTTGCC
* *
17927285 ------TT--T----G-GATCCTTTTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACT
453 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
17927337 CGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTA
518 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
17927402 CTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCTAGGTTTAATGA
583 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCTAGGTTTGATGA
* * *** *
17927467 GGGATAGGGGGCCAATATAAGGGCAAAATACCAGCACCCATCATGCATAATGTGCGCACACCCCC
647 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
17927532 CAGCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCTGGCGAT-TG-T-GCCCCGA
712 CGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC-GGCGATGCGATGGCCCCGA
* * * * * * *
17927594 CGAAGAAAAGTACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGGAACCCTTGGTCCGG
776 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCAG
* *
17927659 TCCGATATTAGACTGGGAATGAACTCCGTTTGCTTAGACTGGGAATGAA
841 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
17927708 CTCCGTCTGACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGG
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * *
17927773 TGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCTACATGCTGTCGATCCTGCTGCCACAACCCTCA
66 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCA
* * *
17927838 GTCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTGAGCCAACCGACAATATGAGCAAG
131 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA-ATGAGCAAG
* *
17927903 CGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGG
195 CGGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
17927968 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
259 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
*
17928033 TTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
324 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * **
17928098 TCACGATTTTTAAAACTTTTTACGGTTCGGGACTTTTTAAAATTTTTTTGCAAGGAGTTTTTGAA
389 TCAAGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTG-AAGGAGTTTTTGCC
*
17928163 CCAAACTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
453 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * **
17928228 AGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTACCCCCATTTCAGACACTTTAATGGCTA
518 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * * *
17928293 CTAGCAG-AAACCTGTAAAACCTCAAATGGTCTTTAAGTGGGTGTGAGTTCTCAACGTTTGATGA
583 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCTAGGTTTGATGA
* * *** *
17928357 GGGATAGGGGGCCATTATAATGGCCAAGTACCAGCACCCATCATGCATCATGTGCACACACCCCC
647 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * **
17928422 CGGCCCCCCGATCATCAGAACCCCAATGCCAACGGTCAGGTTCTCGGCGATG-G-TGG-CCCGAC
712 CGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGGCGATGCGATGGCCCCGAC
* *
17928484 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAGT
777 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCAGT
* * * * *
17928549 CCGATCTTAGACTGGAAATGAACTCCATATGTTTAGACTGGCAGTGAA
842 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* ** * * *
17928597 CTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGACCGCTCAGTCGACCAGAGGGGCGGGG
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* ** * * * * *
17928662 TGCGTAAATCGAGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCACAACCCTCA
66 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCA
* ** * * * *
17928727 GTCTGATCCAATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGAG
131 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAATGAGCAAG
*
17928792 C--G-GGCGGGC--GC-C-ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
195 CGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * ***
17928850 GGTATGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTATATTTTTATGGCTTGTAAAT
260 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
*
17928915 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTT
325 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * * * *
17928980 CATGATTTTTGAAAGTTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCC
390 CAAGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT-TGAAGGAGTTTTTGCCC
*
17929045 CAAACGTGGTAGA-GTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
454 CAAACTTGGTAGACG-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
17929109 AGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTA
518 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
17929174 CTGGAAGCAAACCCGTGAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCTAGGTTTAATGA
583 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCTAGGTTTGATGA
* * *
17929239 GGGATAGGGGGCCAATATAAGGGCAAAATACCAGCACCCATCACACATCATGTGCGCACACCCCC
647 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* ** * * *
17929304 CCGACCCCCCCGATCACCGGAACCCCAATGACGCCGGTCAGGTTTTCGGCGATGCTCCAGCGATG
711 CCG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGGCGA---T---GCGAT-
* * *
17929369 GTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCATCGCAA-CC
768 G-GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
*
17929433 -C--T-CA----G-TC--AGA-T-----T----T--G-AT-CTTAGACTGGAAATGAA
832 TCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* *
17929466 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGAGGCGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * *
17929531 TGCGCAAGCCGGGGATAGGTCGGGTCCCCTTATGCGTGCTGTTGATCCTGCTGCCACTACCCTCA
66 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCA
* * * **
17929596 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATAAAATGAGCGGG
131 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CAAATGAGCAAG
* * * *
17929661 CGGGCGGACGGGCAGGCACTACGCTGGCCAAAGAGAC-GGATGTGCAAGCCGTGGATCGATAGGG
195 CGGGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
17929725 TGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAA
259 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
**
17929790 TTCATACAATCATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCTATTTT
324 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
17929854 TCATGATTTTCAAAACTTTTTGTGGTTCGGGGTTTTTTAAAATTTTTTTAGAAGGA-TTTTCTGT
389 TCAAGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT-GAAGGAGTTTT-TGC
* * *
17929918 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAATTTCAGCTAAAAAC
452 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
17929983 TCGAAGTGTATATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
517 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
17930048 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTG
582 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCTAGGTTTGATG
*
17930113 AGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGC
646 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----
* * * * *
17930178 CCCCCCGACCCCCCCGATCATCGGAAACCCAATACTG-CGGGTCAGGTTCTCCGACGATGCTCCG
707 CCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCT----C---G----G
** * *
17930242 ACGAAGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGC
759 -CG-A--T--G-CGAT-G-GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * ** * * ** * * *
17930307 TTATGCTGTCGAAACCC-CCAGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCTTAAA
815 ATGTGCTACCGCAACCCTCGA-TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
*
17930371 CGGGGAATGAA
879 CTGGGAATGAA
* * * *
17930382 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTCAGCCGGCCAGACGGGTGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * ** * ** * *
17930447 TGCACAAGTCGGGGATTGATC-AGTCCCCCTCTGTGTGCTGTTTATCCTACTATCATAACCTTCA
66 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCA
* * *
17930511 GTCTGGTCTGATCTTAGACTGGCAATGAACTCCGTATGACTAAGCCAACCGACTAAACGAG---G
131 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAATGAGCAAG
** * * * *
17930573 -GGATGGACAGGCGGGCACTACGCCGACCAAAGAGACGGGATGGGCAAGCCGTGGATCGATAGGG
195 CGGGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
17930637 TGGTAGGTGGGTTTAGGCACATTTTCATATTTCTACGTGGCAATGCCATTTTTATGGCTTGTAAA
259 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
* * *
17930702 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACCACTCATTTTCTATTTT
324 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
17930767 TCAAGATTTCCAAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGAAGTTTTGGCC
389 TCAAGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT-TGAAGGAGTTTTTGCC
* * *
17930832 CCAAACTTGGTAGACGTGATCGTTGTTTTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACT
453 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
17930897 CAAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
518 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
17930962 CTGGCAGCAAACTTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
583 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCTAGGTTTGATGA
* * *
17931027 GGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCATCCATCGCACATCATGTGCGCACACCCCT
647 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * *
17931092 TGGCTCCCCGATCGTCAGAACCCCAAAGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAACGATGG
712 CGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CGGCGATG------CGATGG
17931157 TACCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
770 --CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
** * *
17931222 C-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAA
833 CGA-TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* ** *
17931279 CTACGTATGCCTAAGTCAACCCACGAAACGAGCACGCGGGCGCTTAGCCGGCCAGAGGGGCGGGA
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* ** * * * *
17931344 CGCGCAAGCCGATGATCGG-CTGGGTCACCCTCTGCGTGTTGTTGATCCTGCTGCCGCAACCCTC
66 TGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTC
* *
17931408 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC--C--ATGA--AA-
130 AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAATGAGCAAG
* * *
17931466 C--G-AGCGGGCGGGCACTACGTCGGCCGGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
195 CGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * ** *
17931528 GGTAGGTCGGTCTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTGAAT
260 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
** *
17931593 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTTTGGTTTTCTATTTTT
325 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * * * *
17931658 TAAGATTTTTGAAACTTTTTGCGCTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCGC
390 CAAGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT-TGAAGGAGTTTTTGCCC
* * * * *
17931723 CAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAACATTTAGCTAAAAATTC
454 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
17931788 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
519 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
17931853 TGGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAG
584 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCTAGGTTTGATGAG
* * * *
17931918 GAATAGAGGGCCAATATAAGGGCCAAGCACCACCACCCATCGCACATCATGTGCGCACACCCCCC
648 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* **
17931983 GGCCCCCCGATCGTCGAAACCTTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGT
713 GGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CGGCGA---T---GCGAT-G-
* * * * * *
17932048 GCCCCGACAAAGAAAAAAGTGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTC
769 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
*
17932113 GGTCTAGTCC-GATCATAGACTAGGAATGAACTTTTTATGCTTAGACTGGGAATGAACTTCGTAT
834 -G---A-TCCAG-TC-----C-------G--------AT-CTTAGACTGGGAATGAACTCCGTAT
17932177 GCTTAGACTGGGAATGAA
872 GCTTAGACTGGGAATGAA
* * * * *
17932195 CTCCGTATGCTTAAGTGAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGGCCAAAGGGGTGGGG
1 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-CGGG
* ** * * *
17932260 A-GCGCAAGTCGGGGATCGGTCGGGTGACCCTCTGCATGCAGCCGATCCTGCTGCCACAACCCTC
65 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTC
* ** * *
17932324 -GATAC-GATCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAGAAGC
130 AG-T-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAATG-AGC
* * * *
17932387 GGGAGGGCGGGAGGGCGAAAGGGCGGGCGGGCACCACACCGGCCAGAGAGATGGGATGCGCAAGC
192 ---A-AGC----GGGC-----GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
17932452 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATT
244 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * *
17932517 TTTATGGCTTGTAAATTCATATAATGGTCCTTTAAGCCTTCACGTG-AGTTTCATGGCAGGACGA
309 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * * *
17932581 CTC-TATTTCTATTTTTCACGATCTTCGAAAGTTTTTGCGGTTTGGGATTTTTTTAAATTTTTTC
374 CTCGT-TTTCTATTTTTCAAGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT-
* * * * * *
17932645 AGAA-GAATTTTTGGCCCCAAACGTGGTGGACGTGATCCTTGAATTTTTGTTCGCATGCACAAAA
437 TGAAGGAGTTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
17932709 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
501 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* ** * *
17932774 AGACACTTTAACGGCTACTGAAAGAAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAG
566 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAG
17932839 TTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
630 TTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
17932904 CATAG-GAGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCC
695 CAT-GTGCGCACACCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C
* * *
17932968 GATGATGCTCCAGCGATTGTGCCCCGACGAAGAAAAATGCGGGACCAGCACATGCCCGAG
757 G--G-CGAT---GCGA-TG-GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
17933028 AGACGGACAG
Statistics
Matches: 6066, Mismatches: 772, Indels: 437
0.83 0.11 0.06
Matches are distributed among these distances:
864 91 0.02
865 58 0.01
866 42 0.01
867 12 0.00
868 34 0.01
869 669 0.11
870 243 0.04
871 21 0.00
872 4 0.00
873 7 0.00
874 5 0.00
875 298 0.05
876 135 0.02
877 20 0.00
878 46 0.01
879 1 0.00
880 63 0.01
881 382 0.06
882 322 0.05
883 19 0.00
884 55 0.01
885 32 0.01
886 63 0.01
887 3 0.00
889 283 0.05
890 783 0.13
891 121 0.02
892 3 0.00
893 6 0.00
894 80 0.01
895 171 0.03
896 72 0.01
897 181 0.03
898 80 0.01
900 3 0.00
902 11 0.00
903 2 0.00
904 212 0.03
905 1 0.00
907 1 0.00
908 33 0.01
909 6 0.00
911 30 0.00
912 132 0.02
913 301 0.05
914 5 0.00
915 91 0.02
916 277 0.05
917 6 0.00
918 1 0.00
920 2 0.00
921 1 0.00
926 1 0.00
928 1 0.00
934 1 0.00
938 10 0.00
939 306 0.05
940 224 0.04
941 1 0.00
942 1 0.00
943 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (889 bp):
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCA
GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAATGAGCAAGC
GGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
AAGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAGGAGTTTTTGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCTAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGGCGATGCGATGGCCCCGACGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCAGTCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
Found at i:17930242 original size:11 final size:11
Alignment explanation
Indices: 17930226--17930258 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
17930216 GGGTCAGGTT
17930226 CTCCGACGATG
1 CTCCGACGATG
*
17930237 CTCCGACGAAG
1 CTCCGACGATG
17930248 CTCCGACGATG
1 CTCCGACGATG
17930259 GTGCCCCGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.36, G:0.27, T:0.15
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:17931288 original size:26 final size:26
Alignment explanation
Indices: 17931236--17931288 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17931226 CTGGTCTGAT
*
17931236 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTACGCATG
*
17931262 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGCATG
17931288 C
1 C
17931289 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGCATG
Found at i:17932164 original size:26 final size:26
Alignment explanation
Indices: 17932128--17932207 Score: 124
Period size: 26 Copynumber: 3.1 Consensus size: 26
17932118 AGTCCGATCA
* **
17932128 TAGACTAGGAATGAACTTTTTATGCT
1 TAGACTGGGAATGAACTTCGTATGCT
17932154 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTTCGTATGCT
*
17932180 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTTCGTATGCT
17932206 TA
1 TA
17932208 AGTGAACCCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCT
Found at i:17934589 original size:26 final size:26
Alignment explanation
Indices: 17934553--17934605 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17934543 TCGGTTCGAC
*
17934553 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17934579 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17934605 C
1 C
17934606 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17934908 original size:883 final size:875
Alignment explanation
Indices: 17933046--17936225 Score: 4200
Period size: 883 Copynumber: 3.6 Consensus size: 875
17933036 AGACGGGCAT
**
17933046 GCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
17933111 GGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCC
66 GGCACATCTTCATATTTCTATGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
17933176 CTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTACTATTTTTCATGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * *
17933241 CATTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AACTTGGTATAC
196 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
17933305 GTGATCCTTGT-TTTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAATTCGAACTGTACAAGA
261 GTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
** * * *
17933369 TTTTGCGACCATTTGGAAAAAGTGTCCCTATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCT
325 TTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
17933434 GTAAAATCTCAAATGCTCTTTAACG-GGGTGTGAGTTCTCGTGGTTTGATGAGGGATAGGGGGCC
390 GTAAAATCTCAAATGCTCTTTAA-GAGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCC
* *
17933498 AATATAAGGGCCAAGTACTAGCACCCAT-CGCAAATCATGTGCGGACACCCCCCTCGGCCCTCCC
454 AATATAAGGGCCAAGTACCAGCACCCATCCGC-AATCATGTGCGCACA-CCCCCT--GCCCTCCC
*
17933562 GATCACCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGACA
515 GATCACCGAAACCCCAATGTCGCCGGTCAGGTTCT-C--CG--G----G-GATGGTGCCCCGACG
* * * * * *
17933627 AAGAAAAATATGACACCAGCACATGCCTGAGCCCAGCACGTGCCGCCGTAA-CC-C--TC-T-G-
570 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGTCGA
* *
17933685 --T---CT----A--A-TCCG-AT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAA
635 CTTAGACTGGGAATGACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
17933736 CGAAACGAGCGTGCGGGCACTCAACCGACCAGAGGGGCGAGATACGTAAGTCGGGGATCGGTCGG
700 CAAAACGAGAGTGCGGGCGCTC-AGCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGG
* * * * *
17933801 GTCCCTCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTTGGTCTGGTCGGATCTTAGACTGGG
764 GTCCCCCTCTGCGTGCTGTCGATCCTGCTACCTCAACCCTTGGTCCGGTCCGATCTTAGACTGGG
* ** * *
17933866 AATGAACTCTGTATGCCAAAGCCAACCGACAAAATGAGCAGGCGGGCGG
829 AATGAACTC-GTATGCCTAAGCCAACCGATGAAACGAAC-GGCGGGCGG
* * * * * *
17933915 GTACTACGTCGGCCAGAGAGACAGGTTGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGAGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
17933980 GGCACATCTTAATCTTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTATGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
17934045 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
*
17934110 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGAC
196 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGAC
* *
17934175 ATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
261 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
17934240 TTTATGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTG
326 TTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * **
17934305 TAAAATCTCAAATGCTCTTTAAGAGAGTGTGAGTTGTCGACCTTTGATGAGGAATAGGGGGCCAA
391 TAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAA
* * * *
17934370 TAGAAGGGCCAAGTACCAGCACCCATCATGC-ATCATGTGCGCGCACCCCCTGCCCTCCCGATCG
456 TATAAGGGCCAAGTACCAGCACCCATC-CGCAATCATGTGCGCACACCCCCTGCCCTCCCGATCA
* * * * *
17934434 TCGAAACCCCATTATTGCCGGTTAGGTTCTCCGGGGATGGTGCCCCGACGAAGAAAAATGTGGCA
520 CCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGGGATGGTGCCCCGACGAAGAAAAATGTGGCA
*
17934499 CC-GACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTTCGGTTCGACCTTAGACTGG
585 CCAG-CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-TC-G-TCGA-CTTAGACTGG
*
17934563 GAATGTACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACTAG
645 GAATG-ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAG
* * **
17934628 AGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCAAGTCCCCCTC
709 AGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTC
*
17934693 TGCGTGCTGTCGATCCTGCTACCTCAACTCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTA
773 TGCGTGCTGTCGATCCTGCTACCTCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACT-
*
17934758 CGTATGCCTAAGCCAACCGATGAAACGAACGGAAGGGCGG
837 CGTATGCCTAAGCCAACCGATGAAACGAACGG-CGGGCGG
* * * *
17934798 GCACTACGCCGACCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTATGTGGGTTTT
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
** *
17934863 GGCACATCTTCATATTTCTGCGTGCCAATACCATTTTTGTGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTATGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
17934928 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * * * *
17934993 CTTTTTGCGGTTTGGGATTTTTCAAAATTTTTTC-AGAAGGAGTTTTGGTCCCAAACTTTGTAAA
196 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAAGAGTTTTGGCCCCAAACTTGGTAGA
* *
17935057 GGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
260 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
17935122 TTTTAAGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
325 TTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
17935187 GTAAAATCTAAAATGCTATTTAA-AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
390 GTAAAATCTCAAATGCTCTTTAAGA-GGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCC
* *
17935251 AATATAAGGGCCAAGTACTAGTACCCA-CCGCATATCATGTGCGCACA-CCCC--CCCT---GAT
454 AATATAAGGGCCAAGTACCAGCACCCATCCGCA-ATCATGTGCGCACACCCCCTGCCCTCCCGAT
* * * * * * *
17935309 CACCGAAAACTCGATGCCACCGGTCAGGTTCTCCGGGGATGGTGCCTCGACGAAGAAAAATGCGG
518 CACCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGGGATGGTGCCCCGACGAAGAAAAATGTGG
* *
17935374 CACCAGCACATGCCCGAGCCCAGAATGTGCTGCCTCAACCCTCGGTCCGATCTGATCTTAGACTG
583 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CG-TC-GA-CTTAGACTG
*
17935439 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
644 GGAATG-ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
* * * *
17935504 -ACGTGCGGGCGCTCAGCTAGCCAGAGGGGCGGGTTGCGCAAGCCGGGGATCGGTCGGGCCCCCC
708 GA-GTGCGGGCGCTCAGC-GGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCC
* * *
17935568 TCTACGTGCTG-CTGATCCTGCTACCAT-AACCCTTGGTCCGATCTGATCTTAGACTGGGAATGA
771 TCTGCGTGCTGTC-GATCCTGCTACC-TCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGA
*
17935631 ACTCCGTATGCCTAAGCCAACCGATGAAACGGACGGGCGGGCGG
834 ACT-CGTATGCCTAAGCCAACCGATGAAACGAAC-GGCGGGCGG
* * * * **
17935675 GCACTACACTGGCCAGAGAGACGGGATGCGAAAACTATGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
17935740 GGCACATCTTCATATTTCTATGTGCCATTGA-TATTTTTATGGCTTGTAAATTCATACAATGGTC
66 GGCACATCTTCATATTTCTATGTGCCAAT-ACCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
17935804 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTT-ATGATTTTCGA
130 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT-TTCACGATTTTTGA
* *
17935868 AACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTCCAAAAGGAGTTTTGGCCCCAATA-TTGGT
194 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAA-GAGTTTTGGCCCCAA-ACTTGGT
* * *
17935931 -GACGTGTTTCTTGTATTTTTTCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
257 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
17935995 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAA
322 AGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
17936060 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGAGGG
387 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGG
* *
17936125 CCAATATAAGGGCCAAGTACCAGCACCCAT-CGCACATCATGTGCGCACACCCCCAGCCCCCCCG
452 CCAATATAAGGGCCAAGTACCAGCACCCATCCGCA-ATCATGTGCGCACACCCCCTGCCCTCCCG
** * * *
17936189 ATCGTCGGAACCCCAATGTTGCTGGTCAGGTTCTCCG
516 ATCACCGAAACCCCAATGTCGCCGGTCAGGTTCTCCG
17936226 ACGATGCTCC
Statistics
Matches: 2034, Mismatches: 217, Indels: 107
0.86 0.09 0.05
Matches are distributed among these distances:
856 1 0.00
857 56 0.03
858 3 0.00
859 1 0.00
862 3 0.00
864 2 0.00
865 1 0.00
866 2 0.00
867 37 0.02
869 234 0.12
870 218 0.11
871 6 0.00
872 2 0.00
873 2 0.00
876 238 0.12
877 533 0.26
878 8 0.00
879 3 0.00
880 5 0.00
881 6 0.00
882 40 0.02
883 632 0.31
884 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (875 bp):
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTATGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCCGCAATCATGTGCGCACACCCCCTGCCCTCCCGATCAC
CGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGGGATGGTGCCCCGACGAAGAAAAATGTGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGTCGACTTAGACTGGGAATGA
CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGAGTGCGG
GCGCTCAGCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
GTCGATCCTGCTACCTCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCGTATGCCT
AAGCCAACCGATGAAACGAACGGCGGGCGG
Found at i:17935466 original size:26 final size:26
Alignment explanation
Indices: 17935430--17935482 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17935420 CCGATCTGAT
*
17935430 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17935456 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17935482 C
1 C
17935483 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17936982 original size:26 final size:26
Alignment explanation
Indices: 17936953--17937005 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17936943 CCGATCTGAT
17936953 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17936979 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17937005 C
1 C
17937006 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17938634 original size:853 final size:861
Alignment explanation
Indices: 17936303--17941010 Score: 5444
Period size: 885 Copynumber: 5.3 Consensus size: 861
17936293 GGACGGGCAT
* * * *
17936303 GCACTATGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTA
** * ** *
17936368 GGTGCATCTTCATATTTTTGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCC
66 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
17936433 CTTAAGCCGTCACGTGAAGTTTCATGGCAAGATGACTCGTTTACTATTTTTCATGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * *
17936498 CATTTTACTGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AACTTGGTATAC
196 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG-AGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * * *
17936562 GTGATCCTTGCT-TTTTTGTTAGCATGCATAAAAAACTTCAGCTAAAAATTTGAACTGTACAAGA
260 GTGATCCTTG-TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
17936626 TTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
324 TTTTGAGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
17936691 GTAAAATCTCAAATGCTCTTTAACGG-GGTGTGAGTTCTC-ATGGTTTGATGAGGGATAGGGGAC
389 GTAAAATCTCAAATGCTCTTTAA-GGAGGTGTGAGTTCGCGA-GGTTTGATGAGGGATAGGGGGC
* * * * *
17936754 CAAGATAAGGGCCAAGCACCAGCACCCATCGCAAATCATGTGCGGACACCCCCCCGGCCCTCCCG
452 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * * * *
17936819 ATCATTGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACA
517 ATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGGCG--G-T-----GATGGTGCCCCGGCG
* ** *
17936884 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCCACCGTAAACCTCGGTCCGATC
574 AAGAAAAATGCGGCACCAGCACAT---C--GCCCAGCATGTGCTGCCG-CAACC-C--T-CG---
*
17936949 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
626 TGA--TT--AC--GGAAT---C-C-G-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * ** * *
17937014 ACCAACGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGAGATGCGTAAGTCAGGGATCG
679 ACCAACGAAACGAGAGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCG
* * * * *
17937079 GTCGGGTCCCTCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTTGATCTGGTCGGATCTTCGA
744 GTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGA
*
17937144 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCGGGCGGGCGG
809 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--A--A--C-GACGGGCGGGCGG
* * * * *
17937206 GCACTACATCGGCCAGAGAGACGGGTTGCGCAA-CCTATGGATCGATAGGGTGGTAGGTGAGTTT
1 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC-GTGGATCGATAGGGTGGTAGATGGGTTT
* ***
17937270 AGGCACATCTTCATCTTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
65 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
17937335 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAA
130 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
17937400 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCCAAACTTGGTAGA
195 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG-GAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
17937465 TGTGATCCTTGTATTTTTTTTTTGCCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
259 CGTGATCCTTGTA--TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
17937530 GATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGACAGCAAAC
322 GATTTTGAGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
17937595 CTGTAAAATCTCAAATGCTCTTTAA-GAGAGTGTGAGTT-GTCGAGCTTTGATGAGGGATAGGGG
387 CTGTAAAATCTCAAATGCTCTTTAAGGAG-GTGTGAGTTCG-CGAGGTTTGATGAGGGATAGGGG
*** *
17937658 GCCAATATAAGGGCCAAGTACCAGCACCCATCATGCATCATGTGCGCACA--CCCCCTGCCCCCC
450 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* *** *
17937721 CGATCGTCGGAAAGCCAATGTTACCGGTGAGGTTCTCC-G-GG-GATGGTGCCCCGGCGAAGAAA
515 CGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGGCGGTGATGGTGCCCCGGCGAAGAAA
*
17937783 AATGTGGCACCAGCACAT-GCCCAGCATGTGCTGCCGCAACCCTCG-G-TT-C-G-ATCCGAT-C
580 AATGCGGCACCAGCACATCGCCCAGCATGTGCTGCCGCAACCCTCGTGATTACGGAATCCGATGC
* * *
17937841 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGAGTGCGGGCGCTCAGCC
645 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGAGTGCGGGCGCTCAGCC
* * * *
17937906 GGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATCTT
710 GGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * *
17937971 GCTGCCGCAACCATTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
775 GCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
17938036 TGACGAAACGAGCGGGCGGGCGG
840 CGACGAAACGA-CGGGCGGGCGG
* * * * * *
17938059 GCACTACGCCGGCTAGAGAAACGGGATGCGGAAGCCGTGGATCGATAGGGTGGTACATGGGTTTT
1 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTA
**
17938124 GGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
17938189 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * * *
17938254 CTTTTTACGGTTTGGGATTTTTCAAAATTTTTTCAGGGGGAGTTTTGGTCCCAAACTTTGTAGAG
196 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GGAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
17938319 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAGTTCAGCTAAAACCTCGAAGTGTACAATAT
260 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
17938384 TTTAAGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
325 TTTGAGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
17938449 TAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCGCGAGGTTTGATGAGGGATAGAGGGCCAA
390 TAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCGCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
17938514 TATAAGGGCCAGGTACTAGCACCCACCGCATATCATGTGTGCACACCCCCCCGGCCCCCCCGATC
455 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
* * * *
17938579 GTCGAAAACCCAATGCCGTCGGTCAGGTTCTCC-G-GG-GATGGTGCCCCGACGAAGAAAAATGT
520 GTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGGCGGTGATGGTGCCCCGGCGAAGAAAAATGC
17938641 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCTGGTCTGATCTTAGAC
585 GGCACCAGCACAT---C--GCCCAGCATGTGCTGCCGCAACC--C--TC--G--TGA--TT--AC
* *
17938706 TGGGAATGAACTTCATATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAAC
633 --GGAAT---C--C-GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAAC
* * * *
17938771 GA-ACGTGCGGGCACTCAGCCAGCCAGAGGTGCGGGATGCACATGCCGGGGATCGGTCGGGTCCC
690 GAGA-GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCC
* * * * * * *
17938835 TCTCTGGGTGCT-ACTGATCCTGCTACCATAACCCTCAGTCTGGTCTGATCTTAGACTGAGAATG
754 CCTCTGCGTGCTGTC-GATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
*
17938899 AACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGG
818 AACTCCGTATGCCTAAGCCAACCGACGAAACG-ACGGGCGGGCGG
* * * * *
17938944 GCACTACGTCAGCCTGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGTTGGGTTTT
1 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTA
* *
17939009 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTAATACAATGGTCC
66 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
17939074 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTACTATTTTTCACGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * *
17939139 CTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGTATTTTTGGTCCCAAACTTGGTAGAC
196 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG-AGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
17939204 GTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTGCAAGAT
260 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
17939269 TTTGTGACCATTTGAAAAAAGTGTCCCCAA-TTCAGACACTTTAATCGCTACTGGTAGCAAACCT
325 TTTGAGACCATTTGAAAAAAGTGT-CCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * * *
17939333 GAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTCTCAAGGTTTGATGAGGGATAGGGGGCCA
389 GTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCGCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
17939398 ATATAAGGGCCACGTACCAGTACCCATCGCACATCATGTGCGCACACACCCCTCAGCCCACCCGA
454 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCCGA
* * * * *
17939463 TCGTCGG-AACCCTAATGCTGTCGGTCAGGTTCTCCGGTGATGCTCCAGTGATGGTGCACTGGCG
518 TCGTCGGAAACCC-AATGCCGCCGGTCAGGTTCTCC---G--G---CGGTGATGGTGCCCCGGCG
* * * *
17939527 AAGAAAAATACGACACCAGAACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTTCGATC
574 AAGAAAAATGCGGCACCAGCACAT---C--GCCCAGCATGTGCTGCCGCAA-CC-C---TCG-T-
*
17939592 CGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCA
627 -GA--TT--AC--GG----AA-TCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
17939657 ACCCACGAAACGA-ATATGCGGGCGCTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATC
679 ACCAACGAAACGAGA-GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATC
* * * *
17939721 GGCCGGGTCCCCCTCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAG
743 GGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAG
* * * *
17939786 ATTGGGAATGAACTTCGTATGCCTAAGGCAACCGAC-AAA--ACGAGCGGGCGG
808 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGACGGGCGGGCGG
* *
17939837 GCACTACGTC-GCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGA-GGGTTT
1 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA-GATGGGTTT
* *
17939900 AGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTC
65 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * **
17939965 CATTAAGCCTTCACGTGAAGTTTCA-GAGCAAG-CTGACTCATTTTCTATTTTTCAAGATTTTCA
130 CCTTAAGCCTTCACGTGAAGTTTCATG-GCAAGAC-GACTCGTTTTCTATTTTTCACGATTTTTG
** * * *
17940028 AAACTTTTTGTGGTTCGAGATTTTTTAAAATATTTTT-GAAAGGATTTTTGGCCCCAAACTTGGT
193 AAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTCG-GAGGAGTTTTGGCCCCAAACTTGGT
* *
17940092 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACA
256 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
17940157 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
321 AGATTTTGAGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
17940222 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGG
386 CCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCGCGAGGTTTGATGAGGGATAGGGGG
* *
17940287 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCTCGG-CCCCCC
451 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
** * *
17940351 GATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGAAGGTCCGGTGATGGTGCCCCGGT
516 GATCGTCGGAAACCCAATGCCGCCGGTCAGGTTC-TC--C---GG--CGGTGATGGTGCCCCGGC
** *
17940416 GAAGAAAAATGCGGCACCAGCACATGCTCAAGCCCAGCATGTGCCACCGTAACCCTCGATCTGAT
573 GAAGAAAAATGCGGCACCAGCACA---TC--GCCCAGCATGTGCTGCCGCAACCCTCG---TG--
17940481 CTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
628 ---A--TT--AC---G---GAA-TCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
17940546 AACCAACGAAACGAGTGTGCGGGCACTTAACCGGCTAGAGGGGTGGGATGCACAAGCCGGGGATC
678 AACCAACGAAACGAGAGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATC
* * * * *
17940611 GGTCGGGCCCCCCTCTGTGTGCTGTCAATCCTGCTGCGACAACCCTCGGTCCGGTCTGATCTTAG
743 GGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAG
* * *
17940676 ACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA---GTGGGCGG
808 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGACGGGCGGGCGG
* *
17940727 GCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTA
*
17940792 GGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
17940857 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
131 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * **
17940922 CTTTTTACAGTTTGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTCATAGAC
196 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA-GGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
17940987 ATGATGCTTTTATTTTTGTTGGCA
260 GTGATCCTTGTATTTTTGTTGGCA
17941011 AGGGGGTGTG
Statistics
Matches: 3335, Mismatches: 358, Indels: 236
0.85 0.09 0.06
Matches are distributed among these distances:
851 203 0.06
852 5 0.00
853 338 0.10
854 3 0.00
855 1 0.00
857 1 0.00
859 24 0.01
861 181 0.05
862 2 0.00
863 3 0.00
864 1 0.00
865 2 0.00
868 3 0.00
869 1 0.00
871 2 0.00
872 1 0.00
874 1 0.00
875 2 0.00
877 1 0.00
878 3 0.00
881 1 0.00
882 2 0.00
883 2 0.00
884 6 0.00
885 647 0.19
886 51 0.02
887 17 0.01
888 1 0.00
889 2 0.00
890 301 0.09
891 262 0.08
892 441 0.13
893 67 0.02
894 1 0.00
895 1 0.00
896 5 0.00
897 250 0.07
898 6 0.00
899 1 0.00
900 1 0.00
901 2 0.00
902 4 0.00
903 222 0.07
904 62 0.02
905 1 0.00
906 200 0.06
907 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (861 bp):
GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTA
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGAGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCGCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
TCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGGCGGTGATGGTGCCCCGGCGAAGAAAAATGCG
GCACCAGCACATCGCCCAGCATGTGCTGCCGCAACCCTCGTGATTACGGAATCCGATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGAGTGCGGGCGCTCAGCCGGCCAG
AGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
ACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGACGGGCGGGCGG
Found at i:17938750 original size:26 final size:26
Alignment explanation
Indices: 17938699--17938751 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17938689 CTGGTCTGAT
*
17938699 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17938725 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17938751 C
1 C
17938752 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17939625 original size:26 final size:26
Alignment explanation
Indices: 17939596--17939646 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17939586 TCGATCCGAT
*
17939596 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17939622 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17939647 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17940522 original size:26 final size:26
Alignment explanation
Indices: 17940486--17940538 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17940476 CTGATCTAAT
17940486 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17940512 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17940538 C
1 C
17940539 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17942322 original size:359 final size:359
Alignment explanation
Indices: 17941825--17942542 Score: 1147
Period size: 359 Copynumber: 2.0 Consensus size: 359
17941815 CCAATGCGTC
*
17941825 GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTGGTAGGTCAGTTTAGGCACATCTTC
1 GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTGGTAGGTCAGTTTAGGCACATCTGC
* *
17941890 ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTGAATTCATAGAATGGTCCCTTAAGCCTTC
66 ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *** *
17941955 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAGGATTTTTGAAACTTTTTTCGCT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCCAAAACTTTTTACGCT
* * *
17942020 TCAAGATTTTTTAAAATTTTTTCGAAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTT
196 TCAAGACTTTTTAAAATTTTTACGAAAGAATG-TTTGGCCCCAAACTTGGTAGACGTGAT-CTTT
* * *
17942084 -TATTTTTGTTGACATGCACAAAAAAATTTAGCTGAAAACTCGAAA-TGTACAAGATTTTGTGAC
259 GTATTTTTGTTGACATGCACAAAAAAATTAAGCTAAAAACTC-AAAGTGTACAAGATTTTGTGAA
17942147 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
323 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
**
17942184 GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA-GTGGGTTTAGGCACATCTG
1 GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTCAGTTTAGGCACATCTG
17942248 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
65 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
17942313 TATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCCAAAACTTTTTACGG
130 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCCAAAACTTTTTACGC
* *
17942378 TTCGAGACTTTTTAAAATTTTTACGGAAGAATGTTTGGCCCCAAACTTGGTAGACGTGATCTTTG
195 TTCAAGACTTTTTAAAATTTTTACGAAAGAATGTTTGGCCCCAAACTTGGTAGACGTGATCTTTG
*
17942443 TATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAACA
260 TATTTTTGTTGACATGCACAAAAAAATTAAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAACA
* *
17942508 TTTGAAAAACGTGTCCCCATTTCAGACGCTTTAAT
325 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
17942543 AGCTACTGGT
Statistics
Matches: 330, Mismatches: 25, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
358 7 0.02
359 315 0.95
360 8 0.02
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (359 bp):
GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTGGTAGGTCAGTTTAGGCACATCTGC
ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCCAAAACTTTTTACGCT
TCAAGACTTTTTAAAATTTTTACGAAAGAATGTTTGGCCCCAAACTTGGTAGACGTGATCTTTGT
ATTTTTGTTGACATGCACAAAAAAATTAAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAACAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
Found at i:17942852 original size:26 final size:26
Alignment explanation
Indices: 17942823--17942873 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17942813 GATCCGATCA
* *
17942823 TAGACTTGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
17942849 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17942874 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17944604 original size:26 final size:26
Alignment explanation
Indices: 17944575--17944624 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17944565 CTGGTCCGAT
**
17944575 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACAAGGAATGAACTCCGTAAG
17944601 CTTAGACAAGGAATGAACTCCGTA
1 CTTAGACAAGGAATGAACTCCGTA
17944625 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTAAG
Found at i:17945277 original size:26 final size:26
Alignment explanation
Indices: 17945248--17945300 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17945238 CCGGTCTGAT
17945248 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17945274 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17945300 C
1 C
17945301 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17947949 original size:26 final size:26
Alignment explanation
Indices: 17947899--17947951 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17947889 CTGATCTGAT
*
17947899 CTTAGACTGAGAATGAATTTCGTATG
1 CTTAGACTGAGAATGAATCTCGTATG
*
17947925 CTTAGACTGGGAATGAA-CTCTGTATG
1 CTTAGACTGAGAATGAATCTC-GTATG
17947951 C
1 C
17947952 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAATCTCGTATG
Found at i:17948795 original size:26 final size:26
Alignment explanation
Indices: 17948759--17948837 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
17948749 CCGATTTGAT
17948759 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17948785 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
17948811 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17948837 C
1 C
17948838 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17949728 original size:26 final size:26
Alignment explanation
Indices: 17949689--17949741 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17949679 CTGGTCTGAT
17949689 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17949715 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17949741 C
1 C
17949742 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17950276 original size:908 final size:903
Alignment explanation
Indices: 17948103--17950623 Score: 3257
Period size: 908 Copynumber: 2.8 Consensus size: 903
17948093 GGAATGAAAT
* * * * * *
17948103 GAGCAGGCGGTCACTACGCCGGCCAGAGAGACGGGATGCACAGGCCGTGGATCGATAGGGTGGTA
1 GAGCGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * * * * **
17948168 -GTGAGTTTCGACTCATCTTCATATTTCTGCATGCCAATGCCATTTTTATCACTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
17948232 ACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA
* ** * * * *
17948297 ATTTTTGAAACTTTCTGTGGTTTGGGATTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCAAAA
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * **
17948362 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGATC
261 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
17948427 TGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTAGT
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGCTACTGGC
*
17948491 AGCGAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
391 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
17948555 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCGGC
456 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* ** * * * * * **
17948618 ACCCCCGATCACCGGAACCCTAATACCGCCGGTCAGGTTCTCCGGCAATGCTCCGGTGATGGTGC
521 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* *
17948683 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCAGCAAAAATTGG
586 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC---AA----
** * *
17948748 TCCGATTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCT
644 -CC--------CTCGGTCT-GG--T---C-T-G-AT-CTTAGACTGGGAATGAACTCCGTATGCT
* * *
17948813 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGTCG
690 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
17948878 GCCAGAGGGGTGGGATGTGCACGTCGAGGATCGACCGGGTCCCCCTCTGCATGCTACCGATCCTG
755 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACATGCTACCGATCCTG
* * * *
17948943 CTACCGCAACCCTCGGTCTGGTCCGATGTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACC
820 CTACCACAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACC
17949008 GACGAAACGAGCGGGCGGGC
884 GACGAAACGAGCGGGCGGGC
* * * * *
17949028 GGGCGGGCGGGCACTACACCGGCCAGAGAGACG-GAATGCACAAGCCGTGGATCGATAGGATGGT
1 GAGCGGGCGGGCACTACGCTGGCCAGAGAGACGAG-ATGCGCAAGCCGTGGATCGATAGGGTGGT
** * * *
17949092 AGGTGGGTTTAGGCACATCTTTGTATTTCTTCATGCCAATGCCATTTTTATCGCTTGTAAATTCA
65 AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
17949157 TACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCTTGCCAAGATGACTCGTTTTCTATTTTTCAC
130 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * ** * * *
17949222 GATTTTTGAAACTTTTTGCGGTCCAAGATTTTTTAAAATTTTTTCGAAAGGTGTTTTGGCCTCAA
195 AATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* *
17949287 ACTTGGTAGATGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
260 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * * * *
17949352 GCGTACAAAATTTTGTGACCATTTGAAATAATTGTCCACATTTCTGACACTTTATTGGCTACTGG
325 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGCTACTGG
17949417 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
390 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
17949482 TAGGGGGCCAATATAAGGGCCACGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGG
455 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * *
17949547 CCCCCCCGATCGTCGGAACCCCAATACCGTCGGTTAGGTTCTCCAACGATGCTCCGACGATGGTG
520 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
*
17949612 TCCCGAC-AGAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
585 CCCCGACGA-AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* *
17949676 GATCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
649 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* ** * * *
17949741 CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTTGGCCAGAAGGGCAGGATACGCAAGC
714 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * *
17949806 CGGGGATCGGCCGGGTCCCCCTCTACATGCTGCCGATCTTGCTGCCACAACCCTCGGTTCGGTCC
779 CGGGGATCGGCCGGGTCCCCCTCTACATGCTACCGATCCTGCTACCACAACCCTCGGTCCGGTCC
*
17949871 GATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGGGC
844 GATCTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGC
*
17949936 GAGCGGGCGGGCACTACGCTGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 GAGCGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** *
17950001 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTGGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
17950066 GCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA
* * *
17950131 ATTTTCGAAACTTTTTACGGTTGGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAA
196 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
** **
17950196 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGGAATTCAGCTAAAAACTCGTGG
261 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
17950261 TGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-TAGACTA-TTTAATGGCTACTG
326 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCT-GAC-ACTTTAATGGCTACTG
* * *
17950324 GTAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
389 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
17950389 ATGGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGTACATCATGTGTGCACACCCCCCCG
454 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
* * * * * * *
17950454 GGCCCTCCGATCGCCGAAATCCCAATGCCG-CTGGTCAGGTTCTCCGACGATGCTCCTG-GGATA
519 GCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCC-GACGATG
* * * * ** *
17950517 GTGCCCCTACGAAGAAAAATGCGACACTAGCACATGCCCGAGCCTAGCATGTGCTGTTGTAACCC
582 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
***
17950582 TCGGTCCAATCCTG-TCTTAGACTGGGAATGAACTCCGTATGC
647 TCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGC
17950624 CTAAGTCAAC
Statistics
Matches: 1413, Mismatches: 164, Indels: 55
0.87 0.10 0.03
Matches are distributed among these distances:
903 1 0.00
904 204 0.14
905 2 0.00
906 2 0.00
907 4 0.00
908 610 0.43
909 7 0.00
911 1 0.00
913 2 0.00
914 4 0.00
922 2 0.00
924 1 0.00
925 57 0.04
926 250 0.18
927 46 0.03
928 107 0.08
929 1 0.00
930 112 0.08
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
GAGCGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA
ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
GGGATCGGCCGGGTCCCCCTCTACATGCTACCGATCCTGCTACCACAACCCTCGGTCCGGTCCGA
TCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
Found at i:17951368 original size:26 final size:26
Alignment explanation
Indices: 17951319--17951369 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17951309 CACCGAATCT
* *
17951319 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTAGGAATGAACTCCATATGCG
*
17951345 TAGACTAGGAATGAACTTCATATGC
1 TAGACTAGGAATGAACTCCATATGC
17951370 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCG
Found at i:17953138 original size:26 final size:26
Alignment explanation
Indices: 17953087--17953139 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17953077 CCGATCCGAT
*
17953087 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
17953113 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
17953139 C
1 C
17953140 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:17954332 original size:901 final size:899
Alignment explanation
Indices: 17952211--17958471 Score: 8459
Period size: 890 Copynumber: 7.0 Consensus size: 899
17952201 CCGGTCCGAT
* * *
17952211 CTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGT
* * * **
17952276 CGGCCATAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCCACCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
17952341 TGCTGCCGCAACCGTCGGTCTGGTCCCATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * *
17952406 CCGATGAA-A-TGAGCGGGCGGGCGGGCGGGCTGTACACCGGCCAGAGAGACGGGATGCGCCAGC
196 CCGACGAAGAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
**
17952469 CGTGGATCGATAGGGTGGTAGCAGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-T
*
17952534 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * *
17952599 ACTCGTTTTCCACTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTC
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG-GATTTTTTAAAATTTTTTT
* * * * *
17952664 GGAAGGAGTTTTGGTCCCAACCTTGGTAGACGTCATCCTTGTCTTTTTGTTGGCATGCTCAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
17952729 CATTCAGCTAAAAACTCAAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
519 AATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
17952794 AGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GAGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
17952858 TTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATCGCATAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
17952923 CATGTGCTCACACCCCCCACGGCCCCCTCGATCGTCAGAACCTCAAGGCCGTCGGTTAGGTTCTC
713 CATGTGCGCACA-CCCCC-CGGCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
17952988 CGACAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCGCAAGCCCA
775 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
17953053 GCATGTGTTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
840 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17953113 CTTAGACTGGGAATGAACTACGTATGCCTAGGTCAA-CCAACG-AATGAGCGTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAA-GAAACGAGCGTGCGGGCGCTCAG
* ** * *
17953176 TCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATC
65 TCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
** * *** *
17953241 CTGCTGTTGCAACCCTTGGTCCAATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** *
17953306 ACCGACGAAACGAGCGGGTGGGCTGGCGGGCGGGCACTACATCGGCTAGAGAGACGGGATGCGCA
195 ACCGACG-AA-GAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
17953371 AGCCGTGGATTGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCCTATTTCTGGATGCCAATG-C
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
17953435 AGTTCTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 A-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
17953500 ACGACTCATTTTTTATTTTTCATGATTTTGGAAACTTTTTGCGGTTCAGGA-TTTTTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTT
* *
17953564 TTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
451 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
** * *
17953629 AAAAATTCAGCTAAAAACTCGATCTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTCCCGATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
17953694 TCAGACACTTTATTGGCTATTGGTAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
**
17953759 AGTTCTCGACATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * **
17953824 ATCATGTGCGCACA-CCCCCGGCACCCCCGATCACCGGAACCCTAATATCGCCGGTCAGGTTCTC
711 ATCATGTGCGCACACCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * * *
17953888 CGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCTGAGTCCA
775 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *** * * * **
17953953 GCATGTGCTGCAGCAAAAATTGGTCCGATCCGATCTTAGACTTGGAATGAACTTTGTATG
840 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17954013 CTTAGACTGGGAATGGACTCCATATGCCTAAGTAAACCCAAGAAACAAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGT
** * * * * *
17954078 CGGCCAGAGGGGTGGGATACCCACGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
17954143 TACTACCGTAACCCTCGGTCTGGTCCGATGTTAGACTGGGAATGGACTCCGTATCCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17954208 CCAACGTAACGAGCGGGCGGGCGGGCGGGCGGGCACGACGCCGGCCAGAGAGACGGAATGCACAA
196 CCGACG-AA-GAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * **
17954273 GCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTTTATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * * *
17954338 TTTTTATCGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCTTGCCAAGAT
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
17954403 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTTAAAATTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGA-TTTTTTAAAATTTTT
* * * * *
17954468 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGCGATCCTTGAATTTTTGTTGGCATGCACAAA
452 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
17954533 AAAATTCAGCTAAAAACTCAAAGTGTACAAAATTTTGTGACCATTTGAAATAATTGTCCACATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
17954598 CTGACACTTTAATGGCTACTGGCAGCATACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
17954663 GTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCACGTACCAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
17954728 TCATGTGCGCACACCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
712 TCATGTGCGCACACCCC-CCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
17954793 CGGCAATGCTCCGACGATGGTGTCCCGAC-AGAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
775 CGGCGATGCTCCGACGATGGTGCCCCGACGA-AGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
17954857 AGCATGTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATG
839 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17954918 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGT
* * * *
17954983 CGGCCAGAAGGGCAGGATACGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCT
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
17955048 TGCTGCCACAACCCTCTGT-TCGGTCCAATCTTAGACTGCGAATGAACTTCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17955112 ACCGAC-AA-A---A-CGAGCGGGC-GGC-TGC-C--CGCCCGCCAGAGAGACGGGATGCGCAAG
195 ACCGACGAAGAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* ***
17955166 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGCGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
17955231 TTTTATGGCTGGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * *
17955296 ACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTGGGGATTTTTTAAAATTTTTTC
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-CGGATTTTTTAAAATTTTTTT
*
17955361 GGAAGGATTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
17955425 AATTCAGCTGAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
17955490 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTTTAGGGGGTGTGAG
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT-TTAAGGGGGTGTGAG
* * *
17955555 TTCTCGAGGGTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCGATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** *
17955620 CATGTGTGCGCACCCCCCGGCCCCCCAGATCATCGGAACCCCAATGCC-ACGGTCAGGTTCTCCG
713 CATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *** *
17955684 ACGATGCTCCGACGATGGTGCCCTGATGAAGAAAAATGTAACACCAACACATGCCCGAGCCCAGC
777 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * * * *
17955749 ATGTCCTGTCGCAACCCTCAGTCTGGTCTGATCTTGGACTGGGAATGAACTCCATATG
842 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
17955807 CTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCATGAAACGAGCGTGTGAGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
17955872 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCTGTCGGGTCCCCCTCTGCGTGCTGTCAATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
17955937 TGCTGCCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
17956002 CCAACGAA-A-CGAGCGGGCGGGCGGGCGGGCACTACCCCGGCC--AGAGA-GGGATGCGCAAGC
196 CCGACGAAGAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
17956062 CGTGGATCGATAGGGTGGTAGGTGGGTTTGGGAACATCTTCATATTTCTGCATGCCAATGCCATT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
17956127 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGA
326 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
17956192 CTAGTTTTCTATTTTTCACGATTTTTGAAACCTTTTAG-GGTTCGGTATTTTTTAAAATTTTTTC
391 CTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTGCGGTTCGG-ATTTTTTAAAATTTTTTT
* **
17956256 GGAAGGAGTTTTGGCCCCAAACGTT-TTAGACGTGATCCTTGTATTTTTGTCAGCATGCACAAAA
454 GGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
17956320 AAATTCAGCTAGAAACTCGAAGTGTACAACATTTCGTGGCCATTTGAAAAAAATGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
17956385 AGACACTTTAATCGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
17956450 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTAGCAGCACCCATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
17956515 CATGTGCGCACACCCCCCGG--CCCC--T----------CCAATGCCGCCGGTCAGGTTCCCCGG
713 CATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* ** * *
17956566 CGATGCTCTGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACTTGCCCGAGCCCAGCA
778 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
17956631 TGTACTGCCGCAA-CCTACGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
843 TGTGCTGCCGCAACCCT-CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17956688 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCAAAGAAACAAGCGAGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * *
17956753 CGGCCAGAGGGGTAGAATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTACTGTCGATCT
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
17956818 TGTTGTCGAAACCCTCGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17956883 CCGACAAAACGAGCGAGCAGGCGGGCGGGCGGCCACTACGCTGGCCAGAGAGACGGGATGCGTAA
196 CCGAC-GAA-GAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
17956948 GCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTCCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
17957013 TTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAATCATTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
17957078 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG-GATTTTTTAAAATTTTTT
* * * * * * * *
17957143 TGGAAGGACTTTTAGCCCCAAAGTTGGCAGATGTGATCGTTGTATTTTTTTTGGGATGCACAAAA
453 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
** * *
17957208 AAATTCAGCTAAAAACTCGAAGTACACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
17957273 AGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
17957338 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGCGCCAAGTACCAGCGCCCATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
17957403 CATGTGTGCACA--------CCCCTCGATCGCCGAAACCCCAATGCGGCCGGTCAGGTTCTCCGA
713 CATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * *
17957460 CGAGGTTTCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCA-ATTGCCCGAGCCCAGC
778 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA-TGCCCGAGCCCAGC
* * *
17957524 ATCTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATG
842 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
17957582 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGT
* * * * * *
17957647 CGGCCAGAGGGACGGGATGCGCAAGCCGGGGATC-ATCCGAGTCCCACTCTGCGTGCTGCCAATC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGT-CGGGTCCCCCTCTGCGTGCTGCCGATC
* * *** * *
17957711 TTGCTGCCGTAACCCTCGGTCCAAT-CAGATTTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
130 CTGCTGCCGCAACCCTCGGTCTGGTCCA-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
17957775 AACCGACGAA-A-CGAGCGAGCGGGCGGGCAGGCATTACGCCGGCCAGAGAGACGGGATGCACAA
194 AACCGACGAAGAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
17957838 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
17957903 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
17957968 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG-GATTTTTTAAAATTTTTT
* * **
17958033 TGGAAGGTGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATATACAAAA
453 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17958097 AACTTCAGCTAAAAACTTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTT
518 AAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
17958162 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
17958227 GTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * *
17958292 TTTTGTGCGCACACCCCCCCGGCCCCCCCGATCGCAGGAACCCCAATGCCGTCGGTCAGGTTCT-
712 TCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
17958356 ---C--TG----G-TGATGGTGCCCCGACGAAGAAAAATACGGCACCAGTACATGCCCAAGCCCA
775 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
17958411 GCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATG
840 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
17958471 C
1 C
17958472 GTAAGTCAAC
Statistics
Matches: 4713, Mismatches: 568, Indels: 169
0.86 0.10 0.03
Matches are distributed among these distances:
880 11 0.00
881 290 0.06
882 5 0.00
884 2 0.00
885 29 0.01
887 12 0.00
888 426 0.09
889 460 0.10
890 602 0.13
891 117 0.02
892 187 0.04
893 18 0.00
894 302 0.06
895 296 0.06
896 163 0.03
897 10 0.00
898 6 0.00
900 203 0.04
901 488 0.10
902 123 0.03
903 440 0.09
904 109 0.02
905 413 0.09
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGT
CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAGAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGATTTTTTAAAATTTTTTTGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17954921 original size:26 final size:26
Alignment explanation
Indices: 17954892--17954944 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17954882 CCGGTCTGAT
17954892 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17954918 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17954944 C
1 C
17954945 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17956691 original size:26 final size:26
Alignment explanation
Indices: 17956662--17956714 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17956652 CCGGTCTGAT
17956662 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
17956688 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
17956714 C
1 C
17956715 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:17957585 original size:26 final size:26
Alignment explanation
Indices: 17957556--17957608 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17957546 CCGGTTCGAT
*
17957556 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17957582 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17957608 C
1 C
17957609 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17958169 original size:890 final size:890
Alignment explanation
Indices: 17950577--17958471 Score: 10088
Period size: 905 Copynumber: 8.8 Consensus size: 890
17950567 GTGCTGTTGT
** ** *
17950577 AACCCTCGGTCCAATCCTGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAA
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *** * *
17950642 CGAGCGGGTGGGAAGGCAGGCGGGCACTACGCCGATGAAAGAGACGGGATGCGGAAGCCGTGGAT
66 CGAGC--GAGCG--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * **
17950707 CGATAGGGTGGCAGGTGGCTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
17950772 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
17950837 TCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGTTTTTTTTAAATTTTTTTGGAAGGAG
257 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAG
* * * * * *
17950902 TTTTGGCCCCAAACATGGAAGACATGATCCTTGTATTTTTTTTGGCATGCACCAAAAAATTTAGC
322 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * **
17950967 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAATAATTGTCGTCATTTCAGACACTTT
387 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
17951032 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGG
452 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
17951097 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
517 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
17951162 ACAGCCCCCCCGGCCCCCTCGATCGTCGGAACCCAAATGCCGCCGGTCAGGTTCTCCGGCGATGC
582 ACA----------CCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * * *
17951227 -TCTAGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGC
636 TTCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *** * *
17951291 TGTCGCAACCCTCGGCCCCACCGAATCTTAGACTGGGAATGAACTCCGTATGCGTAGACTAGGAA
700 TGCCGCAACCCTCGGTCCGGTCG-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * **
17951356 TGAACTTCATATGCCTAAGTCAACCCCCGAAACGAGTGTATGGGCGCTCAGCCGGCCAGAGGGGC
764 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * *
17951421 GGGATGCGCAAGCCAGGGATCGGT-CAGGTCCCCCTCTGTGTGCTGCCGATCTTGCTGCCAC
829 AGGATGCGCAAGCCGGGGATCGGTCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* * * * *
17951482 AACCCTCGGTCCGGTCCAATCTTATACTGGGAATGAATTCCGTGTGCCTAAGCCGATCGACGAAA
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
**
17951547 CGAGCGAGCGGGCGGGCAGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
66 CGAGCGAGCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* ** *
17951612 AGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCACTGCCATTTTTATGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
17951677 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * * *
17951742 TCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTATTTTGGAATGAG
257 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAG
* * * *
17951807 TTTTAGCCCCAAAATTGGTAGACGTGATCCTTGTGTTTTT-TTGGCATGCACAAAAACATTCTA-
322 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC-AG
* * * *
17951870 CTAAAACCTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAGGCACTT
386 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
17951935 TAATGGCTAATGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
451 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * *
17952000 ATTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCACACACCATGTGCG
516 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
17952065 CACACCCGCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGATGATGCTTCGACGAT
581 CACACCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGACGAT
* * * *
17952130 GGTGCCCCGGCGAAGAAAAATGTGGCAGCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAA--
645 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
*
17952193 --C---CC--TC-A--TT---C--CG---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTA
710 CTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * *
17952235 TGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCATAGGGGTAGGATGCGCAA
775 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAA
* **
17952300 GCCGGGGATCGGT-CGGGTCCCCCTCTGTGTGCCACCGATCCTGCTGCCGC
840 GCCGGGGATCGGTCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* * * * *
17952350 AACCGTCGGTCTGGTCCCATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * ** * *
17952415 TGAGCGGGCGGGCGGGCGGGCTGTACACCGGCCAGAGAGACGGGATGCGCCAGCCGTGGATCGAT
66 CGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
**
17952480 AGGGTGGTAGCAGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTATGGCTT
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTT
* *
17952545 GTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTTCC
195 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
17952610 ACTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTT
260 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTT
* * * * * *
17952675 TGGTCCCAACCTTGGTAGACGTCATCCTTGTCTTTTTGTTGGCATGCTCAAAAACATTCAGCTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
17952740 AAACTCAAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
390 AAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
17952805 TGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GAGGTGTGAGTTTTTGAGGTT
454 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
17952869 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATCGCATATCATGTGCTCAC
519 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--CGC
* * * * * * * *
17952934 ACCCCCCACGGCCCCCTCGATCGTCAGAACCTCAAGGCCGTCGGTTAGGTTCTCCGACAATGCTC
582 A-----CA---CCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTT
* * * * *
17952999 CGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCGCAAGCCCAGCATGTGTTGT
638 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* *
17953064 CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
703 CGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * *
17953129 ACTACGTATGCCTAGGTCAACCAACG-AATGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCAGG
767 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGG
* * * * **
17953193 ATGCGCAAGCCAGGGATC-GACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGTTGC
832 ATGCGCAAGCCGGGGATCGGTCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* ** *
17953251 AACCCTTGGTCCAATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * ** *
17953316 CGAGCGGGTGGGCTGGCGGGCGGGCACTACATCGGCTAGAGAGACGGGATGCGCAAGCCGTGGAT
66 CGAGC----GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * * *
17953381 TGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCCTATTTCTGGATGCCAATG-CAGTTCTTATG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATG
* *
17953445 CCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
191 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
17953510 TTTTATTTTTCATGATTTTGGAAACTTTTTGCGGTTC-AGGA-TTTTTAAAATTTTTTTGGAAAG
256 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGG
*
17953573 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
320 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
** * *
17953638 GCTAAAAACTCGATCTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACT
385 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
17953703 TTATTGGCTATTGGTAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
450 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
**
17953768 CATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
515 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** *
17953833 GCACACCCCCGGCACCCCCGATCACCGGAACCCTAATATCGCCGGTCAGGTTCTCCGGCGATGCT
580 GCACA-------C-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* ** * * *
17953898 CCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCTGAGTCCAGCATGTGCTG
637 TCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *** * * * **
17953963 CAGCAAAAATTGGTCCGATCCGATCTTAGACTTGGAATGAACTTTGTATGCTTAGACTGGGAATG
702 CCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * * * **
17954028 GACTCCATATGCCTAAGTAAACCCAAGAAACAAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGTGG
766 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG
* * * * * * * *
17954093 GATACCCACGCCGAGGATCGGT-CGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGT
831 GATGCGCAAGCCGGGGATCGGTCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* * * * * *
17954152 AACCCTCGGTCTGGTCCGATGTTAGACTGGGAATGGACTCCGTATCCCTAAGCCAACCAACGTAA
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA
* * * * *
17954217 CGAGCGGGCGGGCGGGCGGGCGGGCACGACGCCGGCCAGAGAGACGGAATGCACAAGCCGTGGAT
65 --A-CGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * ** *
17954282 CGATAGGATGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTTTATGCCAATGCCATTTTTATCG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * *
17954347 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCTTGCCAAGATGACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
17954412 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTTAAAATTTTTTCGAAAGG
257 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GA-TTTTTTAAAATTTTTTTGGAAGG
* * *
17954476 AGTTTTGGCCCCAAACTTGGTAGATGCGATCCTTGAATTTTTGTTGGCATGCACAAAAAAATTCA
320 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * * * *
17954541 GCTAAAAACTCAAAGTGTACAAAATTTTGTGACCATTTGAAATAATTGTCCACATTTCTGACACT
385 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
17954606 TTAATGGCTACTGGCAGCATACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCAA
450 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
17954671 GGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCACGTACCAGCACCCATCGCACATCATGTGC
515 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
17954736 GCACACCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCAATG
580 GCACA----------CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* *
17954801 CTCCGACGATGGTGTCCCGAC-AGAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
635 CTTCGACGATGGTGCCCCGACGA-AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
17954865 CTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGA
699 CTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
17954930 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAAGGG
763 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * *
17954995 CAGGATACGCAAGCCGGGGATCGG-CCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCAC
828 CAGGATGCGCAAGCCGGGGATCGGTCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* * * *
17955057 AACCCTCTGTTCGGTCCAATCTTAGACTGCGAATGAACTTCGTATGCCTAAGCCAACCGAC-AAA
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
17955121 --A-CGAGCGGGC-GGC-TGC-C--CGCCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
66 CGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *** *
17955178 AGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGCGCCAATGCCATTTTTATGGCTGG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
*
17955243 TAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * * * *
17955308 TTTTTCATAATTTTTGAAACTTTTTGCGGTTGGGGATTTTTTAAAATTTTTTCGGAAGGATTTTT
261 TTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
*
17955373 GG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTGAA
326 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
17955437 AACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATG
391 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
17955502 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTTTAGGGGGTGTGAGTTCTCGAGGGTT
456 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT-TTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
17955567 GATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCGATCGCACATCATGTGTGCGCA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGTGCGCA
* ** * *
17955632 CCCCCCGGCCCCCCAGATCATCGGAACCCCAATGCC-ACGGTCAGGTTCTCCGACGATGCTCCGA
583 -----C-ACCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGA
* * *** * * *
17955696 CGATGGTGCCCTGATGAAGAAAAATGTAACACCAACACATGCCCGAGCCCAGCATGTCCTGTCGC
641 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * *
17955761 AACCCTCAGTCTGGTCTGATCTTGGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
706 AACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
17955826 CCGTATGCCTGAGTCAACCCATGAAACGAGCGTGTGAGCGCTTAGCCGGCCAGAGGGGCGGGATG
770 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATG
* * * * *
17955891 CGCAAGCTGGGGATCTGT-CGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTGCCAC
835 CGCAAGCCGGGGATCGGTCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* * *
17955946 AACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAA
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
17956011 CGAGCGGGCGGGCGGGCGGGCACTACCCCGGCC--AGAGA-GGGATGCGCAAGCCGTGGATCGAT
66 CGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
17956073 AGGGTGGTAGGTGGGTTTGGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
17956138 TAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* *
17956203 TTTTTCACGATTTTTGAAACCTTTTAG-GGTTCG-GTATTTTTTAAAATTTTTTCGGAAGGAGTT
261 TTTTTCACGATTTTTGAAA-CTTTTTGCGGTTCGAG-ATTTTTTAAAATTTTTTTGGAAGGAGTT
* **
17956266 TTGGCCCCAAACGTT-TTAGACGTGATCCTTGTATTTTTGTCAGCATGCACAAAAAAATTCAGCT
324 TTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * * * *
17956330 AGAAACTCGAAGTGTACAACATTTCGTGGCCATTTGAAAAAAATGTCCCCATTTCAGACACTTTA
388 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
17956395 ATCGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
453 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
17956460 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTAGCAGCACCCATCGCACATCATGTGCGCA
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * **
17956525 CACCCCCCG---GCC----CCTCCAATGCCGCCGGTCAGGTTCCCCGGCGATGC-TCTGGTGATG
583 CACCCCCCGATCGCCGGAACC-CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTC-GACGATG
* * *
17956582 GTGCCCCGACGAAGAAAAATGTGGCACCAGCACTTGCCCGAGCCCAGCATGTACTGCCGCAA-CC
646 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* *
17956646 TACGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGT
711 T-CGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * *
17956711 ATGCCTAAGTCAACCAAAGAAACAAGCGAGCGGGCGCTCAGCCGGCCAGAGGGGTAGAATGCGCA
774 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * * * * *
17956776 AGCCGGGGATCGAT-CGGGTCCCCCTCTGTGTACTGTCGATCTTGTTGTCGA
839 AGCCGGGGATCGGTCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* * *
17956827 AACCCTCGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
17956892 CGAGCGAGCAGGCGGGCGGGCGGCCACTACGCTGGCCAGAGAGACGGGATGCGTAAGCCGTGGAT
66 CGAGC--G-A-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
17956957 CGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTCCCAATGCCATTTTTATGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * *
17957022 CTTGTAAATTTATACAATGGTCCCTTAATCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
17957087 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAC
257 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAG
* * * * * * *
17957152 TTTTAGCCCCAAAGTTGGCAGATGTGATCGTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGC
322 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
** * *
17957217 TAAAAACTCGAAGTACACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
387 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
17957282 AATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
452 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
17957347 TTTGATGAGGGATAGGGGGCCAAAATAAGCGCCAAGTACCAGCGCCCATCGCACATCATGTGTGC
517 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
17957412 ACACCCCTCGATCGCCGAAACCCCAATGCGGCCGGTCAGGTTCTCCGACGAGGTTTCGACGATGG
582 ACACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGACGATGG
* *
17957477 TGCCCCGACGAAGAAAAATGCAGCACCAGCA-ATTGCCCGAGCCCAGCATCTGCTGCCGCAACCC
647 TGCCCCGACGAAGAAAAATGCGGCACCAGCACA-TGCCCGAGCCCAGCATGTGCTGCCGCAACCC
*
17957541 TCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTA
711 TCGGTCCGG-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * *
17957606 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGACGGGATGCGCAA
775 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAA
* * * * * *
17957671 GCCGGGGATC-ATCCGAGTCCCACTCTGCGTGCTGCCAATCTTGCTGCCGT
840 GCCGGGGATCGGTCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
** * *
17957721 AACCCTCGGTCCAAT-CAGATTTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAA
1 AACCCTCGGTCCGGTCCA-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
17957785 ACGAGCGAGCGGGCGGGCAGGCATTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGA
65 ACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
17957850 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCTT
130 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
17957915 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
195 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
17957980 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGTGTTT
260 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTT
* ** *
17958045 TGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATATACAAAAAACTTCAGCTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
17958109 AAACTTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAA
390 AAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
17958174 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
454 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* **
17958239 TGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTTTGTGCGCAC
519 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
17958304 ACCCCCCCGGCCCCCCCGATCGCAGGAACCCCAATGCCGTCGGTCAGGTTCT----C--TG----
584 A----------CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTC
* * * *
17958359 G-TGATGGTGCCCCGACGAAGAAAAATACGGCACCAGTACATGCCCAAGCCCAGCATGTGCTGCC
639 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* *
17958423 GCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGC
704 GCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGC
17958472 GTAAGTCAAC
Statistics
Matches: 6119, Mismatches: 730, Indels: 298
0.86 0.10 0.04
Matches are distributed among these distances:
864 93 0.02
865 165 0.03
866 114 0.02
867 83 0.01
868 190 0.03
869 2 0.00
870 4 0.00
873 3 0.00
875 2 0.00
876 104 0.02
878 1 0.00
879 2 0.00
880 13 0.00
881 298 0.05
883 5 0.00
885 25 0.00
886 2 0.00
887 21 0.00
888 434 0.07
889 461 0.08
890 592 0.10
891 108 0.02
892 188 0.03
893 28 0.00
894 412 0.07
895 292 0.05
896 165 0.03
897 11 0.00
898 7 0.00
900 210 0.03
901 480 0.08
902 128 0.02
903 439 0.07
904 307 0.05
905 725 0.12
906 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGACGATGGTGCC
CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
CCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGG
GATCGGTCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
Found at i:17959330 original size:26 final size:26
Alignment explanation
Indices: 17959294--17959346 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17959284 TCGGTCTGAT
*
17959294 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17959320 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17959346 C
1 C
17959347 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17960209 original size:26 final size:26
Alignment explanation
Indices: 17960180--17960232 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17960170 CCGATCCGAT
* *
17960180 CTTAGATTAGGAATGGACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17960206 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17960232 C
1 C
17960233 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17963499 original size:17 final size:17
Alignment explanation
Indices: 17963477--17963511 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
17963467 AGGGCCAAGT
17963477 ACCAGCACCCATCACAC
1 ACCAGCACCCATCACAC
*
17963494 ACCAGCACCCATCGCAC
1 ACCAGCACCCATCACAC
17963511 A
1 A
17963512 TCATGTGCGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.51, G:0.09, T:0.06
Consensus pattern (17 bp):
ACCAGCACCCATCACAC
Found at i:17964614 original size:26 final size:26
Alignment explanation
Indices: 17964578--17964627 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17964568 GTCTGATCTT
17964578 AGACTAGGAATGAACTCCGTATGCTG
1 AGACTAGGAATGAACTCCGTATGCTG
*
17964604 AGACTGGGAATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCGTATGC
17964628 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTG
Found at i:17965517 original size:26 final size:26
Alignment explanation
Indices: 17965477--17965529 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17965467 CTGGTCTGAT
17965477 CTTAGATTGGCAATGAACTCCGTATG
1 CTTAGATTGGCAATGAACTCCGTATG
*
17965503 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGCAATGAACTCCGTATG
17965529 C
1 C
17965530 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGCAATGAACTCCGTATG
Found at i:17965538 original size:902 final size:900
Alignment explanation
Indices: 17960639--17966395 Score: 7047
Period size: 901 Copynumber: 6.5 Consensus size: 900
17960629 TTTATGGATT
* * *
17960639 GCCCCAAACTTGGTATACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAA
1 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAA
* *
17960704 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCTATTTTAGACACTTTAATGG
66 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
*
17960769 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
131 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
17960834 TG-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
196 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
** * * * * * ** *
17960898 CCCTAGCCCCCCCGATCGTCAGAACCCGAATGCAC-TCGGTCAGGTTCTCCGAAGATGGTCCGGC
261 CCCCCGGCCCCCCGATCGCCGGAACCCCAATGC-CGCCGGTCAGGTTCTCCGGCGATGCTCCGGC
* * * *
17960962 GACGGTGCCCTGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTA
325 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
17961027 A-CC-C--TC--G---G-TC-----C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTC
390 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * * * * *
17961066 CGTATGCCTAAGTCAACCCATGAAATGTGCGTACTGTCGCTCAACCGGGCAGAGGGGCGAGATGC
455 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* ** *** * * * *
17961131 ACAAGCCAAGGATTAACCGGGTCCCCCT-TTGCGTGCTGTCGATCCT-GCTGCCGCAACCCTTGG
520 GCAAGCCGGGGATTGGTCGGGTCCCCCTCTT-CATGCTG-CGATCCTAGCAGCCACAACCCTCGG
* * * * *
17961194 TTCGGTCTGATGTTAGACTGGGAATGAACTCCGTACGGCTAAGCCAACCGATGAAA--TG-A-G-
583 TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGA
* * *
17961254 CGGGCGGGC--G--CTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGT
648 CGGGCGGGCGAGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
17961315 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAACTCA
713 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
17961380 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
778 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* ** * * *
17961445 GATTTTTGAAACTTTTTGCTATTCAGGATTTGTGAAAATTTTTTC-GAAGGAGTTTTG
843 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* *
17961502 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAA
1 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAA
* * *
17961567 ACTCGAAGCGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
66 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
* * *
17961632 CTACTGGCAGCAAACCTGCAAAATCTCAAATGCT-TTGTAAGGGGGTGTAAGTTCTCGAGGTTTG
131 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAGTTCTCAAGGTTTG
* * * * **
17961696 ATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCTATCACACATCAAGTTTGCACA-
195 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * ** **
17961760 CCCCCCGGCCCCCCCGATCGCCTGAACCCCAATGCCGTCGGTCAGGTTCTTAGATGATGCTCCGG
260 CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGG
* ** ** * ** *
17961825 CGATGGTGCCCCGATGAAGAAAAATGCGGTGCCAGCACATGCTTGAGCCCAGCATGTGTTCCCGT
324 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
17961890 AACCCTCGGTCCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGC-----C------T-AA-
389 AACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * *
17961941 -----AT--C-AA--C-A--CACGAAACGAGCGTGCGGGCGTTCAGCCTGCCAGAGGGGCAGGAT
453 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * *
17961993 GTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCT-GCTA-CCGCAACCCTC
518 GCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTTCATGCTG-CGATCCTAGC-AGCCACAACCCTC
* * *
17962056 AGTCCGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG
581 GGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG
* * * *
17962121 G-CGGGCGGGCGAGCACTATGCCTG-CCGGAGAGACGGGATACGTAAGCCGTGGATCGATAGGGT
646 GACGGGCGGGCGAGCACTACGCC-GACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
17962184 GGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTGGTAAAT
710 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
17962249 TAAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTGTTTTT
775 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * * *
17962314 CACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGAGTTTTG
840 CATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * * * *
17962375 GCCCCAAAATTGGTAGACGTGATTCTTTTATTTTTCTTGGCGTGCACAAAAAAATTCAGCTAAAA
1 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAA
* * *
17962440 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGG
66 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
* * *
17962505 CTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGA
131 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
* * *
17962570 TGAGGGATAGAGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCGCACC
196 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * ** *
17962635 CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGGCGGCCAGGTTCTCTAGCGATGCTCCGACG
261 CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCG
* * * ** * *
17962700 ATGGTGCCCCGACAAAGAAAAATGTGACACCAGCACATGGTCGAGCCCAACATGTGCTGTCGTAA
326 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA
*
17962765 -CC-C--TC--G---G-TC-----C---G-AT---CT---TAT-CTTAGACTGGGAATGAACTCT
391 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * *
17962804 ATATGCCTAAGTC-ACCCACAAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCAGGATGCA
456 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* **** * * * * * * *
17962868 CAAGCCAGGGATCAACCGGGTCCCCCTCTGCGTGTTGCCGATCCT-CCTGCTACAACCCTTGG-T
521 CAAGCCGGGGATTGGTCGGGTCCCCCTCTTCATGCTG-CGATCCTAGCAGCCACAACCCTCGGTT
* * * **
17962931 CTGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTCAGCCAACCGACGAGATTAGCG-GGT
585 C-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-A--A-CGAGCA
* * * *
17962995 GGTCGGGCGGGCGGGCACTACGCC-AGTC-GAGAGACGGGATGCGCAAGCCGTGGATCGATAAGG
645 GGACGGGCGGGCGAGCACTACGCCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
17963058 TGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
709 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
17963123 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTTT
774 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * * * * *
17963188 TCACGATTTTTAAAACTATTTGCGGTTTGGGATTTTTTACAATTTTTTCAGAAGGAGTTCTA
839 TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * * * *
17963250 TCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAATAAATTCAGGTAAAA
1 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAA
* *
17963315 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATAG
66 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
* *
17963380 CTACTGGTAGCAAACCTGTAAAATCTCACATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
131 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
17963445 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACACCAGCACCCATCGCA
196 TGAGGGATAGGGGGCCAATATAAGGGCC----A--AG------T-----ACCAGCACCCATCGCA
17963510 CATCATGTGCGCACACCCCCCCGGCCCCCCGATC-CCGGAACCCCAATGCCGCCGGTCAGGTTCT
244 CATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
*** * * **
17963574 CTAACGATGCTCTGGCGATGGTGCCCCGACAAAGAAAAATGCATC-CCTAGCACATGCCCGAGCC
309 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC-AGCACATGCCCGAGCC
* * * * * **
17963638 TAGCATGTGTTGGT-GCAACCTTCGGTCTGATCTTATCTTAGACTGGGAATGAACTCTATATGCT
373 CAGCATGTGCT-GTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
17963702 TAGGCTGGGAATGAACTTCGTATGCCTAAGTCAAACCACGAAACGTGCGTGCGGGCGCTCAGCCG
437 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
17963767 GCCAGAGGGGCAGCATGCACAAGCCGAGGATCGATCGGGTCCCCCTCTTCATGCTGTCGATCCT-
502 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTTCATGCTG-CGATCCTA
* * * *
17963831 GCTA-CCACAACCCTCGATTCGGTTTGGTCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
566 GC-AGCCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17963895 CCGACGAAACGAGCAGG-CGGGCGGGCGAGCACTATGCCTG-CCGGAGAGACGGGATGCGTAAGC
630 CCGACGAAACGAGCAGGACGGGCGGGCGAGCACTACGCC-GACCAGAGAGACGGGATGCGCAAGC
17963958 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
694 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
17964023 TTTATGGCTGGTAAATTAAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
759 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
17964088 CTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
824 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
17964153 GAAGGAGTTTTG
889 GAAGGAGTTTTG
* * *
17964165 GCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAA
1 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAA
* *
17964230 ACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
66 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
* * *
17964295 CTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGA
131 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
*
17964360 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
196 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * * *
17964425 CCCCTCGGCCCTCCCGATCGCCAGAACCCTAATGCCACCGGTCAAGTTCTCCGGCGATGCTCTGA
261 CCCC-CGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGG
* ** * * * *
17964490 CGATGGTGGCCCGGTGAGGAAAAATGCTGCCCCAGCACATGCCCGAGCCCAGCATGTGCTGTTGC
324 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
* ** * *
17964555 AACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTGAGACTGGGAATGAACT
389 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
17964620 CCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCCCAACCGGCAAGAGGGGCGGGATG
454 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * *
17964685 TGCAAGCCGGGGATTGGTCGGGTCCCCCTCTTCGTGCTGCAAAT-CTAGCAGCCATAACCCTTGG
519 CGCAAGCCGGGGATTGGTCGGGTCCCCCTCTTCATGCTGC-GATCCTAGCAGCCACAACCCTCGG
* * * * * *
17964749 TTTGGTCCGATCTTAGACTAGGAATAAACACCGTATGCCTAAGCCAACCGACAAAACGAGC-GGA
583 TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGA
* * * * *
17964813 CGGGCAGGCGAGCATTACGCCGACCAGAGATATGAGATGCGCAAGCCGTGGATCGATAGGGTGGT
648 CGGGCGGGCGAGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
17964878 ATGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
713 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
17964943 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
778 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * *
17965008 GATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGCGTTTTG
843 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
*
17965066 GCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATTCAGCTAAA
1 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATTCAGCTAAA
*
17965131 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATG
65 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATG
*
17965196 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTG
130 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
* * *
17965261 ATGAGGGATAGGGGGCCAACATAACGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACAC
195 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
17965326 CACCCCCGGCCCCCCGGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGCTCCG
260 C-CCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG
* * * *
17965391 GTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCG
323 GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
* * *
17965456 CAACCCTCGGTCTGGTCTGATCTTAGATTGGCAATGAACTCCGTATGCTTAGATTGGGAATGAAC
388 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* ** * * * * *
17965521 TCCGTATGCCCAAGTCAACTTACGAAACGAGCGTGCGAGCGCTCAGTCGGCCAGTGGGGTGAGAT
453 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * *
17965586 GCGTAAGCCGGGGATTGG-CTGGGTCCCCCTCTGCATGCTGCCGATCCTA-CTGCCGCAACCCTC
518 GCGCAAGCCGGGGATTGGTC-GGGTCCCCCTCTTCATGCTG-CGATCCTAGCAGCCACAACCCTC
* * * *
17965649 GGTCCGCTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGG
581 GGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG
*
17965714 GA-GGGCGGGCGAGAGGGCACTACGCCGATCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
646 GACGGGCGGGC--GA--GCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
17965778 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGGCATTTTTATGGCTTGTA
707 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * * *
17965843 AATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTTGTTTTTTATT
772 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
17965908 TTTCATGATTTTTGAAACTTTTTGCGATTTGGGATTTTTTTAAAATTTTTTTGGAAGGATTTTTG
837 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * *
17965973 GCCCCAACCTTGGTAGACATGATCCTTGTCTTTTTGTTGGCATGAAAAAAAAAATTCAGCTAAAA
1 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAA
* *
17966038 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTTAGACACTATAATGG
66 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
* * *
17966103 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTAA
131 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
* * *
17966168 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCTTCGCACATCATCTGCGCACA-C
196 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * **
17966232 CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGG-T-T----C--T--T-CAACG
261 CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCG
* * * *
17966286 ATTGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGTAA
326 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA
* **
17966351 CCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
391 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
17966396 CTAAGTCCAC
Statistics
Matches: 4243, Mismatches: 499, Indels: 275
0.85 0.10 0.05
Matches are distributed among these distances:
847 1 0.00
848 3 0.00
851 2 0.00
852 1 0.00
854 2 0.00
855 1 0.00
858 2 0.00
859 2 0.00
862 2 0.00
863 192 0.05
864 291 0.07
865 5 0.00
866 3 0.00
867 4 0.00
868 14 0.00
869 4 0.00
870 5 0.00
871 2 0.00
872 345 0.08
873 346 0.08
874 12 0.00
875 416 0.10
876 22 0.01
878 2 0.00
879 3 0.00
881 2 0.00
885 1 0.00
886 1 0.00
887 2 0.00
888 4 0.00
889 2 0.00
890 3 0.00
891 91 0.02
892 152 0.04
893 2 0.00
895 3 0.00
898 36 0.01
899 6 0.00
900 16 0.00
901 577 0.14
902 520 0.12
903 40 0.01
904 15 0.00
905 1 0.00
906 395 0.09
907 68 0.02
909 3 0.00
910 2 0.00
911 1 0.00
913 2 0.00
914 22 0.01
915 420 0.10
916 3 0.00
917 31 0.01
918 138 0.03
919 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCG
ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA
CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
CAAGCCGGGGATTGGTCGGGTCCCCCTCTTCATGCTGCGATCCTAGCAGCCACAACCCTCGGTTC
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGACGG
GCGGGCGAGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
Found at i:17967679 original size:26 final size:26
Alignment explanation
Indices: 17967643--17967693 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17967633 TGATCCGTCT
17967643 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
*
17967669 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
17967694 TTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:17969897 original size:877 final size:875
Alignment explanation
Indices: 17968543--17971905 Score: 4134
Period size: 877 Copynumber: 3.8 Consensus size: 875
17968533 ACTCCGCATG
* * * * * *
17968543 CTTATACTGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAATA-AGCGTACGGGCGGTGAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-AGAGCGTGCGGGCGCTCAA
* * * * * * *
17968607 CCAGCCAAAGGGGCGGGATGCGCAACCCGAGGATCGGTCGGTTCCCCCTCTGCGTGCTG-CAGAT
65 CCGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCA-AT
** * * * * *
17968671 CCTGCTACCATAACCCTTGGTCCGCTCCGATCTTAGCCTGGGAATGAAGTCCCTATGCCTAAGCC
129 CCTGCTACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** *
17968736 AATTGACA-AAACGA-----------GCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGC
194 AACCGA-AGAAACGAGCGGGCCGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
17968789 AAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTGCATGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
17968854 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACATGATGTTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
17968919 ACGACTCGTGTTT-TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTT
388 ACGACTCGT-TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG-GATTTTTTAAAATTT
* ** * *
17968983 TTTTGGAAGGCTTTTTGGTCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
451 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
*
17969048 AAAAAATTCAGCTATAAAA-TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
516 AAAAAATTCAGCTA-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
17969112 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTG
580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * *
17969177 CGAGTTCTCGAGGTTTGATGAGGGATAGGGTGCCAATGTAAGGGCCATGTACCAGCACCCACCGC
645 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
17969242 ACATCATGCGCGCACACCCCTCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTC
710 ACATCATGTGCGCACACCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * *
17969307 TCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGTACCAGTACATG-CCGAAGC
774 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG-AGC
*
17969371 CCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TCTGAT
838 CCAGCATGTGCTGCCGCAACCCTCGGTCCAGATCCGAT
* * * * *
17969408 TTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAAC
* * * * * *
17969473 CGGCCAGACAGGTGGGGTGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCAATCC
* * * * * * *
17969538 TGCTGCCGTAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAACCAT
131 TGCTACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17969603 CCGAATAAACGAGCGGGCCGACGGGCGGCCAGACACTACGCCGGCCAGAGAGACGGGATGCGCAA
196 CCGAAGAAACGAGCGGGCCG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
17969668 GCTGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
17969733 TTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGAT
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
17969798 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTCTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTT
* * * * *
17969863 CAG-AGGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCTTTGTATTTTTGTTGGCACGCAAAAA
454 CGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * * *
17969927 AAAATTGAGCCAAAAACTCGAAGTGTGCCAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
17969992 CAAACACTTTAATGGCTACTGGTAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
17970057 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** * * * * **
17970122 TCATGTGCGCAAACCCCCCCGGCCCTCTTGATCCCCGGAACCCCAATGTCGCCGATAAGGTTCAA
713 TCATGTGCGC--ACACCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
17970187 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCTA
776 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
*
17970252 GCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
841 GCATGTGCTGCCGCAA-CC-C--T-C-G---G-TC-----C-----A-G-A-TCCG-AT
* * *
17970311 GCTTAGATTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAACA-AGCGTGCGGGTGCTCA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-AGAGCGTGCGGGCGCTCA
* * * * * * * * *
17970375 GCCGGCCAGAGAGGCGAGATTTC-CTAAGTCGAGGATCGACCGAGTCCCCCTCTGCATGCTGCCA
64 ACCGGCCAGAGAGGCGGGA-TGCGC-AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCA
* * * * * * *
17970439 ATCCTGCTACAGCAA-CCGTCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGGCTAA
127 ATCCTGCTACCGCAACCCTTGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * *
17970503 GCCAACTGACGAAACTAGCGCGCGCGCGGGTGGGTGGGCACTACGTCGGCCAGAGAGATGGGATG
191 GCCAACCGAAGAAACGAGCGGGC-CGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
*
17970568 CGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-GCATGCCAA
255 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
17970632 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTTAAGTTTCATGGC
320 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
17970697 AAGACGAGTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTCGGATTTTTCAAAAT
385 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG-TTCGGATTTTTTAAAAT
** * * *
17970762 TTTTTTTGAAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCAAGCA
449 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
*
17970827 CAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
514 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
17970892 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGAGAT
579 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
17970957 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCG
644 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
17971022 CACATCATGTGCGTACACCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTT
709 CACATCATGTGCGCACACCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * * * * *
17971087 TTTCGGCGTTGCTCCGGCGATGATGCCCAGACAAAGAAAAATGCAGCACCAGCACATGCCCGAGC
773 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * ** *
17971152 CCAGCATGTGCTGCCGTAATCCTCAAT-CTGATCCGAT
838 CCAGCATGTGCTGCCGCAACCCTCGGTCCAGATCCGAT
* * * *
17971189 CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGATCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAAC
* * * * * * * * *
17971254 CGACCAGAGGGGCGGGATGTGCAAGACGGGGAT-GAATTGGGTCCACCTCCGCATGCTGTCGATC
66 CGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCG-ATCGGGTCCCCCTCTGCGTGCTGTCAATC
* * * * * * * * * *
17971318 TTGCCACTGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGATCTTCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17971383 ACCGACA-AAACGAGCTGGCGGACGGGCTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCAC
195 ACCGA-AGAAACGAGCGGGCCG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
17971447 AAGCCATGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
17971512 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * **
17971577 ACGACTTGCTTTT-TATTTTTCACGATTTTTGTAACTTTTTGCGGTTCAAAATTTTTTAAAATTT
388 ACGACTCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTT
* * * *
17971641 TTTTGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACA
451 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
17971706 AAAAAATTCAGCTAAAAACTCGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGCCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
17971771 TTCGGACACTTTGATGGCTACTGGCTGCAAACTTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
17971836 GAGTTCTGGATGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
17971901 CATCA
711 CATCA
17971906 GTTCTGTACG
Statistics
Matches: 2147, Mismatches: 286, Indels: 118
0.84 0.11 0.05
Matches are distributed among these distances:
864 2 0.00
865 166 0.08
866 2 0.00
875 2 0.00
876 195 0.09
877 883 0.41
878 111 0.05
879 14 0.01
880 2 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 1 0.00
887 2 0.00
888 2 0.00
893 2 0.00
898 2 0.00
899 2 0.00
901 1 0.00
902 11 0.01
903 106 0.05
904 447 0.21
905 189 0.09
906 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAAC
CGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCAATCC
TGCTACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGAAGAAACGAGCGGGCCGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCCAGATCCGAT
Found at i:17970315 original size:26 final size:26
Alignment explanation
Indices: 17970286--17970338 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17970276 CCGGTCCGAT
17970286 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17970312 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17970338 C
1 C
17970339 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17971919 original size:68 final size:68
Alignment explanation
Indices: 17971837--17971973 Score: 247
Period size: 68 Copynumber: 2.0 Consensus size: 68
17971827 AGGGGGTGTG
*
17971837 AGTTCTGGATGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCAC
1 AGTTCTGGACGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCAC
17971902 ATC
66 ATC
* *
17971905 AGTTCTGTACGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCCAGTACCAGCACCCATCGCAC
1 AGTTCTGGACGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCAC
17971970 ATC
66 ATC
17971973 A
1 A
17971974 TGTGCGCACA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.19
Consensus pattern (68 bp):
AGTTCTGGACGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCAC
ATC
Found at i:17973069 original size:26 final size:26
Alignment explanation
Indices: 17973021--17973070 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17973011 GTCCGATCTT
*
17973021 AGACTGGGAATGAACTCCGTATGCTG
1 AGACTGGGAATGAACTCCATATGCTG
* *
17973047 AGACTTGGAATGAACTCTATATGC
1 AGACTGGGAATGAACTCCATATGC
17973071 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTG
Found at i:17973877 original size:26 final size:25
Alignment explanation
Indices: 17973807--17973885 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 25
17973797 CCTATCCGAT
*
17973807 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACT-GGAATGAACTCCGTATG
17973833 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
* *
17973859 CTTAGACTGGAAATAAACTCAGTATG
1 CTTAGACTGG-AATGAACTCCGTATG
17973885 C
1 C
17973886 CTATGTCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 2 0.04
26 46 0.96
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:17974784 original size:26 final size:26
Alignment explanation
Indices: 17974736--17974785 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17974726 GTCCGATCTT
*
17974736 AGACTGGGAATGAACTCCGTATGCTG
1 AGACTGGGAATGAACTCCATATGCTG
* *
17974762 AGACTTGGAATGAACTCTATATGC
1 AGACTGGGAATGAACTCCATATGC
17974786 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTG
Found at i:17975561 original size:26 final size:25
Alignment explanation
Indices: 17975523--17975594 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 25
17975513 CCTATCCGAT
17975523 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACT-GGAATGAACTCCATATG
*
17975549 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCATATG
17975575 CTTAGACTGGAAATGAACTC
1 CTTAGACTGG-AATGAACTC
17975595 AGTATGCCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 2 0.05
26 41 0.95
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:17977393 original size:26 final size:26
Alignment explanation
Indices: 17977357--17977409 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17977347 CGGGTCCAAT
17977357 CTTAGACTGGGAATGAACTCTGGATG
1 CTTAGACTGGGAATGAACTCTGGATG
* *
17977383 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGGATG
17977409 C
1 C
17977410 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGGATG
Found at i:17978282 original size:26 final size:26
Alignment explanation
Indices: 17978242--17978294 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17978232 CTGATCTGAT
* *
17978242 CTTAGACTGGAAATGAATTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
17978268 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17978294 C
1 C
17978295 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17979581 original size:895 final size:895
Alignment explanation
Indices: 17974889--17980937 Score: 7600
Period size: 926 Copynumber: 6.7 Consensus size: 895
17974879 CTTCACCGAG
* * * * *
17974889 CAGAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCTT
1 CAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
17974954 ATTTCCACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
66 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * * * *
17975019 GTGAAGTTTCATGGTAAGATGACTCGTTTTCGATTTTTCATGATTTTGGAAACTTTTTACGATTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC
* ** * * * * * *
17975084 -AGGATTTTTTTAAATTTTTTCGGAAGGCGTTTTGGCCCCGAACTTAGCAAACATGGTCCTTGTA
196 GA-GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * * *
17975148 TTTTTTTTGGCATGCACAAAAAAATTTATCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATT
260 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
17975213 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
325 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
17975278 TACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
390 TGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
17975343 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG--CCCCCGATCGTCGGAACCCC-A
455 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAA
* * * * * * ** *
17975405 TACCGTCGGTCAGGTTATCCGTCGATGCTTCGGCGATGGTGCCCCGTGGAAGAAAAATGCGTCAC
520 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * *
17975470 CAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCCT-ATCCGATCTTAGACTGGG
585 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACT-GG
* *
17975534 AATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCAGTA
648 ---GAA-T-CA-A--C-T---C------T--A-----TATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * *
17975599 TGCCTATGTCAACCCACGAAATGAGCATGCGGGTGCTCAGCCGACCAGAGTGGCGGGATGCACAA
688 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
** * * * * * * * *
17975664 GTTGGGGATCGA-TCGAGTCCCCCTCTGCATACTGCTGATCCTGCTACCTCAACCCTCGGGCCAG
753 GCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC-GGTCGG
* * **
17975728 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGAGCGGGTGGGCG
817 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C----GAACG
* * *
17975793 GGCGGGCGGGCACTATGTCGGC
874 GGCAGGCGGGCACTACGCCGGC
*
17975815 CAGAGAGATGGGATGCGCAAGCCA-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
1 CAGAGAGACGGGATGCGCAAG-CAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
17975879 TATTTTTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
65 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
17975944 CGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTT
130 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
* * ** *
17976009 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTCACCTCAAACTTGGTAGACGTGATCCTTGTA
195 CGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
17976074 TTTTTTTTGGCTTGCACAAAAAAATACAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
260 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
17976139 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATCGCTGCTGGCAGCAAACCTGTAAAATCTCAAA
325 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
17976204 TGCTCTTGAAAGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
390 TGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
17976269 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTTCCGGCCCCCCCGATTGCCAGAACC
455 GTACCAGCACCCATCGCACATCATGTGCGCACA--CCCC--CCGGCCCCCCCGATCGTCGGAACC
* * * * *
17976334 CCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGCAATGGTGCCTCGGCGAAGAAAAATGCG
516 CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * *
17976399 GCACCAGCACATGCCCTAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGATT
581 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT
* * * * *
17976464 GGAAATCAACTCTGTATGCTTGGACTGAGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACG
646 GGGAATCAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * *
17976529 AGCGTGTC-GGCGCTCAGTCGCCCTGAGGGGCGGGATGCACAAGTCAGGGATCGA-TCGGGTCCC
711 AGCGTG-CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCC
* * * * * *
17976592 CCTCTGCATGCTACCAATCTTGCTGCTGTAACCCTCGGTCTGGTCCGATCTTAGA-TGGGAATGA
775 CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGA
*
17976656 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGGGCGGGAGGGCGGGCACTACGCCAGC
839 ACTCCGTATGCCTAAGCCAACCGACGAAAC--G-AA-CGGGC---A-GGCGGGCACTACGCCGGC
* * * *
17976721 CAGAGAGACGAGATGCGCAAGCCGTGGATCAATAGGATGGTAGGTGGGTTTAGGCACATCTTCAT
1 CAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * *
17976786 ATTTCTGCATGCCAATGCCATTTTTATGGCGTGTAAATTCTTACAATGGTCCCGTAAGCCTTCAC
66 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
17976851 GTGAGGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTAAAACTTTTT-TGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC
** * *
17976915 GAGATTTTCCAAAATTTTTTCGGAAGG-TGTTTTGTCCCCAAACTTGGTAAACGTGATCCTTGTA
196 GAGATTTTTTAAAATTTTTTCGGAAGGAT-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
17976979 TTTTTGTTCGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTGGTGACCATT
260 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* **
17977044 TGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTAACAGCAAACCTGTAAAATCTCAAA
325 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
17977109 TGCTCTTT-AAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAA
390 TGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
17977173 GTACCAACACCCATCGCGCATCATGTGCACACACCTCCCCTCGG-CCCCCCGATCGTTGGAACCC
455 GTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCC-CGGCCCCCCCGATCGTCGGAACCC
* * ** *
17977237 CAATGCCGTCGGTCAGGTTCT-CAACGATGCTCCGACGATGGTG-CCCTTCTGAAGAAAAATACG
517 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC-GAAGAAAAATGCG
* * * * * * *
17977300 GCACGAGCAAATGCTCGAGCCCAGCATGTGGTGCCGCAACCCTCGATCGGGTCCAATCTTAGACT
581 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT
* ** * *
17977365 GGGAATGAACTCTGGATGCTTAGACTGGGAATTAACTCTGTATGCCTAAGTCAACCCACGAAACG
646 GGGAATCAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * * *
17977430 AGCGTGCGGGCGCTCAACCGACCAGAGGAGTGGGATGCGCAAGTCAGGGATCG-GTCGGGACCCC
711 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCC
** * * *
17977494 CTCTATGTGCTGCCGATCCTGCTACCGCAACCCTTGCTCCGGTCCGATCTTAGACTGGGAATGAA
776 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAA
* ** *
17977559 CTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCAGGCGGGCACTATACCTGC
840 CTCCGTATGCCTAAGCCAACCGACGAAACGA----ACGGGCAGGCGGGCACTACGCCGGC
* *
17977619 CAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCAT
1 CAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
17977684 ATTTCTACATGCCAATGCCATTTTTATGGCTTTGT-AATTCATACAATGGT-CCTTAAGCCTTCA
66 ATTTCTACATGCCAATGCCATTTTTATGGC-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
17977747 CGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATAATTTTTGAAATTTTTTGCGGTT
130 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
* * *
17977812 CGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTGGACGTGA-CCATTGT
195 CGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCC-TTGT
* * * * *
17977876 ATTTTT-TTTGCACGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGGTTTTGCGACCAT
259 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
** * *
17977940 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAACAGCTACTGGCAGCAAACCTATAAAATCTCAT
324 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
17978005 ATGCTCTTT-AAGTGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
389 ATGCTCTTTAAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
17978069 AAGTACTAGCACCCATCGCATATCATGTGCGCAC-CCCCCCGGCCCCTCCGATCATCGGAACCCC
453 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
* * *
17978133 GATGCCGCCGGTCAGGTT-T-------T--T-CGATGATGGTGCCCCG-CTGAAGAAAAATGCGA
518 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC-GAAGAAAAATGCGG
* * * * *
17978186 CACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTGATCTGATCTTAGACTG
582 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * * * * * *
17978251 GAAATGAA-TTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACA
647 GGAATCAACTCT-ATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * **
17978315 ATCGTGCAGGCGCTCAACCGGCCAGACGGGCAGGATTTGCAAGCCGGGGATCGAC-CGGGTCCCC
711 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCC
* * *
17978379 CTCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAA
776 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAA
* * *
17978444 CTCCGTATGACTAAGCCAACCGACGAAGCGAGCGAGCCGACGGGCGGGCGGGCAATACGCCGGC
840 CTCCGTATGCCTAAGCCAACCGACGAA---A-CGA----ACGGGCAGGCGGGCACTACGCCGGC
* *
17978508 CAGAGAGACGGGATGCGCAAGCCA-TGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTA
1 CAGAGAGACGGGATGCGCAAG-CAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
17978572 TATTTCTACGTGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGCCCCTTAAGCCTTCA
65 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
17978637 CGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT
130 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
** **
17978702 CGAGATTTTTTAAAATTTTTTTAGAAGGATTTTTGGAGCCAAACTTGGTAGACGTGATCCTTGTA
195 CGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * ** *
17978767 TTTTTGTTGGTATGCATAAAAAAATTCATTTAAAAACTCGAAGTGCACAAGATTTTGTGACCATT
260 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
17978832 TGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
325 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
17978897 TGCTCTTTAAAAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
390 TGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
17978962 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATTGTCGGAAACCCAA
455 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAA
* * * **
17979027 TGCCGCCGGTTAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGACAAAGAAAAATGCGGTGC
520 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * *
17979092 CAGCACATG-CCGTAGCCCAGCATGTGCTGCCGCAACCTTCGGTCTGGTTCGATCTTAGATTGGG
585 CAGCACATGCCCG-AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* *
17979156 AATCAACTCTATAAT-CTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAA
649 AATCAACTCTAT-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
17979220 CGTGCGGGCGTTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGACCCCCT
713 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCT
* * * * * * * *
17979284 TTGTGTGATGCCGATCTTGTTGCAGCAACCCTCGGTGCAGTCGGATCTTAGACTGGGAATGAACT
778 CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACT
* * * **
17979349 TCGTATGCCTAAGCCAACCGATGAAACGAACGGGCAGGCGGGCACTATGTTGGC
842 CCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCGGGCACTACGCCGGC
*
17979403 CAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCAT
1 CAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
17979468 ATTTCTACATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
66 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * ** *
17979533 GTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTT
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC
* * * *
17979598 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATGCTTGTAT
196 GAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
17979663 TTTTTTTGGCATGC-CTAAAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTT
261 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
17979727 GAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAAT
326 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
17979792 GCTCTTT-AAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAG
391 GCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
17979856 TACCAGCACCCATCGCACATCATGTGCGCACTCCCCCTGGCCCCCCCGATCGCCGGAACCCTAAT
456 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * * * *
17979921 GCTGCCAGTCAGGTTCTCCG--G--G----GA-G--GGTGCCCCGATGAAGAAAAATGTGACGCC
521 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * *
17979975 AGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAA
586 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
* *** * * * *
17980040 TGAACTCCGCATGCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCAT
651 TCAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
*
17980105 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGC-CGGGTCCCCCTCTG
716 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTG
* ** * * * * * *
17980169 TGTGCTATCGATCCTACTGCTGCAACCCTC-ATCTGGTCCCATCTTAGGCTGGGAATGAACTCCA
781 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCG
* *
17980233 TATGCCTAAGCCAACCGACGAAACG-A---GCGGGCGGGCACTACGCTGGC
845 TATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCGGGCACTACGCCGGC
** * * *
17980280 CAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGGACATCTTCAT
1 CAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
17980345 ATTTAC-ACATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 ATTT-CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * **
17980409 CATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTT
130 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
* * *
17980474 C-AGGATTTTTTCAAATTTTTTCGGAAGGATTTTTGGTCCCAAACTTGGTAGCCGTGATCCTTGT
195 CGA-GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
17980538 ATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
259 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
17980603 TTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAA
324 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
17980668 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCA
389 ATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
17980733 AGTACCAGCATCCATCGCACATCATGTGTGCACATCCCCCCCGGCCCCCCCGATCGTCGGAACCC
454 AGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCC
** *
17980798 CAATGCCGCCGGTCAGG---T-------T-CTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAG
517 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * *
17980852 CACCAGCACATGCCCGAGCCCACCATGTGCTGCTGCAACCCTCGGTCTGGTCCGGTCTTAGACTG
582 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * **
17980917 GGTATGAACTCCGTATGCTTA
647 GGAATCAACTCTATATGCTTA
17980938 AGGCAACCGA
Statistics
Matches: 4503, Mismatches: 534, Indels: 217
0.86 0.10 0.04
Matches are distributed among these distances:
877 267 0.06
878 120 0.03
879 83 0.02
880 2 0.00
881 189 0.04
882 211 0.05
883 3 0.00
884 2 0.00
885 264 0.06
886 4 0.00
888 6 0.00
889 128 0.03
890 133 0.03
891 201 0.04
892 44 0.01
893 130 0.03
894 120 0.03
895 308 0.07
896 1 0.00
897 190 0.04
898 257 0.06
899 9 0.00
900 9 0.00
901 236 0.05
902 91 0.02
903 264 0.06
904 91 0.02
905 188 0.04
906 224 0.05
907 135 0.03
908 1 0.00
914 1 0.00
920 1 0.00
923 1 0.00
924 1 0.00
926 445 0.10
927 3 0.00
928 5 0.00
929 2 0.00
930 4 0.00
932 21 0.00
933 108 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC
GAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
GCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
TCAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTG
CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCGGGCACTACGCCGGC
Found at i:17980056 original size:26 final size:26
Alignment explanation
Indices: 17980027--17980079 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17980017 CCGATCCAAT
* *
17980027 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTAGGAATAAACTCCGCATG
*
17980053 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGCATG
17980079 C
1 C
17980080 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGCATG
Done.