Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 96 of 117
Found at i:18116587 original size:185 final size:184
Alignment explanation
Indices: 18116261--18116676 Score: 521
Period size: 185 Copynumber: 2.2 Consensus size: 184
18116251 TGCTGCTGCA
* * * *
18116261 ACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAATTT
1 ACCCTCACTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * *
18116326 CGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGAAATGC
66 CATATGCCTAAGTCAACCAACGAAACGAGCATACGGGCGCTCAAACGGCCAGAGAGGCGAAATGC
* *
18116391 GCAAGCCAGGGATCGGTTGGGTCCCCCGCTGCGCACTGCAGATCCTACTACCGTT
131 GCAAGCCAGGGATCGGCTGGGTCCCCCGCTACGCACTGCAGATCCTACTACCG-T
18116446 ACCCTCGA-TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
1 ACCCTC-ACTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * **
18116510 CCATATGCCTAAGTTAACCCACGAAACGAGCATACGGGCGCTCAAATGAG-TAGAGAGGCGGGAT
65 CCATATGCCTAAGTCAACCAACGAAACGAGCATACGGGCGCTCAAACG-GCCAGAGAGGCGAAAT
* * * * ** * * *
18116574 GCGCAATCCAGGGATCGGCTGGGTTCCCCTCTATGTGCTGCCGATCCTGCTGCCGT
129 GCGCAAGCCAGGGATCGGCTGGGTCCCCCGCTACGCACTGCAGATCCTACTACCGT
* *
18116630 AGCCCTCACTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
1 A-CCCTCACTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
18116677 CTAAGCCAAC
Statistics
Matches: 199, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
184 3 0.02
185 194 0.97
186 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
ACCCTCACTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CATATGCCTAAGTCAACCAACGAAACGAGCATACGGGCGCTCAAACGGCCAGAGAGGCGAAATGC
GCAAGCCAGGGATCGGCTGGGTCCCCCGCTACGCACTGCAGATCCTACTACCGT
Found at i:18117402 original size:26 final size:26
Alignment explanation
Indices: 18117366--18117418 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18117356 CTAGTCCGAT
*
18117366 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18117392 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18117418 C
1 C
18117419 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18118303 original size:26 final size:26
Alignment explanation
Indices: 18118267--18118317 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18118257 CGTCCGATCC
*
18118267 TAGACTGGGAATGGACTTCGTATGCT
1 TAGACTGGGAATGAACTTCGTATGCT
18118293 TAGACTGGGAATGAACTTCGTATGC
1 TAGACTGGGAATGAACTTCGTATGC
18118318 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCT
Found at i:18118936 original size:905 final size:901
Alignment explanation
Indices: 18116459--18120117 Score: 4966
Period size: 897 Copynumber: 4.1 Consensus size: 901
18116449 CTCGATCTGA
* *
18116459 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGT
1 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** * * *
18116524 TAACCCACGAAACGAGCATACGGGCGCTCAAATGAG-TAGAGAGGCGGGATGCGCAATCCAGGGA
66 CAACCCACGAAACAAGCATACGGGCGCTC-AACCAGCTAGAGGGGCGGGATGCGCAAGCCGGGGA
* * ** ** * * * *
18116588 TCGGCTGGGTTCCCCTCTATGTGCTGCCGATCCTGCTGCCGTAGCCCTCACTCCGATCCAATCTT
130 TCAGCCGGG-TCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCTGATCCGATCTT
* *
18116653 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-GGTCGGGCGGGCGGACG
194 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-CGGGCGGGCGGGCG
* * *
18116717 GGCGCTACGCCAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
258 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18116782 AGGCACATCTCCATATTTCTGCGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATAGTC
323 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
18116847 CCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGATGACTCATTTTCTATTTTTCATGATTTTCAAA
388 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAA
*
18116912 ACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGGA-GGATTTTTGGCCCCAAACTTGGTAG
453 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GGATGGATTTTTGGCCCCAAACTTGGTAG
* * *
18116976 A-AGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAA
517 ACA-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
* *
18117040 GATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
581 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAAC
*
18117105 CTGTAAAATCTCAAATGCTCTTT-AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
646 CTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
18117169 CAATATAA-GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCACCCCGA
711 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGCCCCCCGA
* * * * * *
18117233 TCGTCGGAACCCTAATGCCACCGGTCAGGTTCTCCAGCGATGCTCGGGCGATGGTGCACCGGCAA
776 TCGCCGAAACCC-AATGCCATCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGACAA
* * * *
18117298 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCCACCCTCGGTCTAG
840 AGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAG
* *
18117360 TCCGATCTTAGACTAGGAATGAAC-TCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
1 TCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
18117424 TCAACCCACGAAACAAGCGTACGGGCGCTCAACCGGCCATAGGGGCGGGATGCACAAGCCGGGGA
65 TCAACCCACGAAACAAGCATACGGGCGCTCAACCAGCTAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * *
18117489 TCAACCGGGTCCCCCTCTGCGTGCTGCCCATCCTACTGCCACAACCCTCAGTTTGATGCGATGTT
130 TCAGCCGGGT-CCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCTGATCCGATCTT
* ** * * **
18117554 AGACTAGGAATGAACTCCGTACACCTAAGCCAACCGACGAAACGA--A--CGTGCGGGCAGGCAA
194 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGG
*
18117615 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTA
259 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
18117680 GGCACATCTTCATATTTCTGCGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
324 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
18117745 CTTAAGCCTTCATGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAA
389 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAA
* ** * * * *
18117810 CTTTTTGCGGTTCGAAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGTC
454 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGATGGATTTTTGGCCCCAAACTTGGTAGAC
* *
18117875 ATGATCCTTGT-TTTTTGTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
519 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
18117939 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTG
584 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTG
18118004 TAAAATCTCAAATA-CTCTTTAAGGGGGTGTGAGTTCTC-AGGGTTTGATGAGGGATAGGGGGCC
649 TAAAATCTCAAA-AGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCC
* * * * *
18118067 AATATAAGGGCCAAGTACCAGGACCCATCGCATATCATGTGCGTACA-ACCCCCAGCCCCCCGAT
712 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGCCCCCCGAT
* * * ** * **
18118131 CGCCGAAGACTCATTGCCCATTGGTCAGGTTCTCTGGTGATGCTCCGGCGATGGTGCCCCGGTAA
777 CGCCGAA-ACCCAATG-CCATCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGACAA
* * * *
18118196 AGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCTACTGCAACCCCTCAGTCCCG
840 AGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA-CCCTCAGTCCAG
* * *
18118259 TCCGATCCTAGACTGGGAATGGACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
1 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
18118324 CAACCCATGAAACAAGCATGCAGGCGTTCAGCCAGCTAGAGGGGTGGGATGCGCAAGGCGGGGAT
66 CAACCCACGAAACAAGCATACGGGCGCTCAACCAGCTAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * * * *
18118389 TGGCCGGGTCCCCTTCTGCGTGCTACCGATCTTGCTGGCACAACCCTC-GATCTGGTCCGATCTT
131 CAGCCGGGTCCCC-TCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAG-TCTGATCCGATCTT
* * *
18118453 AGATTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCAGGCGGGCGGGCGGGCGG
194 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGG
* * * *
18118518 GCACTACGCCGGTCAGAGAGACGGGATGCGGAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTG
259 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
18118583 GGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
324 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-C
* * * * *
18118648 CCTTAAGCCTTCACATGAAGTTTCATGCCAGGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
388 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAA
* *
18118713 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGATGGAATTTTGGCCCCAAACTTGGCAGA
453 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGATGGATTTTTGGCCCCAAACTTGGTAGA
18118778 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
518 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
* *
18118843 TTTTGTGACCATTTGAAAAATGTTTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCT
583 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
18118908 GTAAAATCTCAAAAGCTCTTTAAGGGGGTGTAAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
648 GTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
18118973 ATATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGCGCACAGCCCCCCGGCCCCCCCGAT
713 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAG-CCCCCCGAT
* * * * * *
18119038 CGTCGGAACCCCAATGCCGTCGGTCAAGTTCTCCAGCGATGCTCAGGCGATGGTGCCCCGACGAA
777 CG-CCGAAACCCAATGCCATCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGACAAA
* ** **
18119103 GAAAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTGTTGCAACCCTCAGTCTGG
841 GAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAG
* * * * *
18119164 TCTGATTTTGGACTGGGAATGAAC-TCTTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
1 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** * * * * * *
18119228 CAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGTTAGAGGGGCCGGATGTGCAAGCCGAGGAT
66 CAACCCACGAAACAAGCATACGGGCGCTCAACCAGCTAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * ***** * * *
18119293 CAGTCGGGTCCCCTATGTGTGTTGTCGATCCTGCTATTGTAACACTCAGTCTGGTCCGATTTTAG
131 CAGCCGGGTCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCTGATCCGATCTTAG
* * * *
18119358 AC------T--ACTCCGTATGCCTAAG-CAACTGACGAAAATGAGCGGGCGTGCGGGCGGGCGGG
196 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAACGAGCAGGCGGGCGGGCGGGCGGG
* *
18119414 CACTACGCCGGCCAGAGAGACGTGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
260 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
18119479 GCACATCTTCATATTTCTACGTGCC-ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
325 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
18119543 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGA-TTTCGAAAC
390 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAAC
*
18119607 TTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAT-GATTTTTGGCCCCAAACTTGGTAGAC
455 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG-ATGGATTTTTGGCCCCAAACTTGGTAGAC
* * *
18119671 GTGATCCTTGTATTTTTGCTCGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
519 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
* *
18119736 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTG
584 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
18119801 TAAAATCTCAGATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
649 TAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
18119866 TATAAGGGCCAAGTACCAGCAACTATCACACATCATGTGCGCACACCCCCCCAGCACACCCGATC
714 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGC-CCCCCGATC
* * * * *
18119931 GCCGAAACCCAATGCCGTCGGTCAGGTTC-CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGA
778 GCCGAAACCCAATGCCATCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGACAAAGA
* *** * * *
18119995 AAAATACGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCACAACACTCAATCCAG
843 AAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAG
* * *
18120054 TCTGATCTTAGATTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
18120118 CGAACTGACA
Statistics
Matches: 2435, Mismatches: 291, Indels: 74
0.87 0.10 0.03
Matches are distributed among these distances:
890 99 0.04
891 63 0.03
892 307 0.13
893 55 0.02
894 42 0.02
895 121 0.05
896 135 0.06
897 322 0.13
898 130 0.05
899 203 0.08
900 7 0.00
901 196 0.08
903 169 0.07
904 231 0.09
905 244 0.10
906 91 0.04
907 16 0.01
908 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACAAGCATACGGGCGCTCAACCAGCTAGAGGGGCGGGATGCGCAAGCCGGGGAT
CAGCCGGGTCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCTGATCCGATCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGC
ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACT
TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGATGGATTTTTGGCCCCAAACTTGGTAGACAT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGCCCCCCGATCGCC
GAAACCCAATGCCATCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGACAAAGAAAA
ATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAG
Found at i:18120111 original size:26 final size:26
Alignment explanation
Indices: 18120060--18120112 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18120050 CCAGTCTGAT
* *
18120060 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18120086 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18120112 C
1 C
18120113 CTAAGCGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18121695 original size:26 final size:26
Alignment explanation
Indices: 18121666--18121718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18121656 CCGGTTTGAT
* *
18121666 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18121692 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18121718 C
1 C
18121719 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18122596 original size:26 final size:26
Alignment explanation
Indices: 18122560--18122612 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18122550 CTGGTCTGAT
18122560 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18122586 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18122612 C
1 C
18122613 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18124378 original size:26 final size:26
Alignment explanation
Indices: 18124349--18124401 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18124339 CCGGTCCGAT
* * * *
18124349 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTCGAAATAAAATCCGTATG
18124375 CTTAGACTCGAAATAAAATCCGTATG
1 CTTAGACTCGAAATAAAATCCGTATG
18124401 C
1 C
18124402 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGAAATAAAATCCGTATG
Found at i:18124795 original size:898 final size:890
Alignment explanation
Indices: 18120804--18125531 Score: 6234
Period size: 891 Copynumber: 5.3 Consensus size: 890
18120794 CCGGTCTGAT
* * * *
18120804 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18120869 CGGCCAGAGGGGCGGGAAGCGCAAGCCGGGGATCGA-CTGGGTCCCCCTCTGCATGTTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATC-GGGTCCCCCTCTACGTGTTGCCAATC
** * * ** * *
18120933 CTGCTGCTGCAACCCTCGATCTGATCCAATCTTAGACTAGGAAAGAACTCTGTATGCCTAAGCCA
130 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
18120998 ACCGATGAAACGAGCGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTC
195 ACCGACGAAACGAGCGGGCGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18121063 GTGGATCGGTAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATTCCA-TT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
18121127 TTAGAGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
325 TTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
* * * *
18121192 CTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
389 CTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
*
18121257 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAA
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
18121322 ATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
18121387 ACACTTTAATGGCTAATGGCAGCAAACTTGTAAAATCTCAAATACTCTTTAAGGGTGTGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18121452 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAACACCCATTGCACATCA
649 CTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
* * * * * * *
18121517 TATGCACATACCCCCCGGCCCCCCCGATCATCGAAATCCCAATGCTGCCGGTTAGG-T-T--T-T
713 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGG-TAGGTTCTCCTCT
* * *
18121577 CCGACGATGGTGCCCCCACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGGGCTG
777 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC-AGCATGTGCTA
* * ** *
18121642 CCGCAACCCTCGATCCGGTTTGATCTTAGACTGGGAGTGAACTCCGTATG
841 CCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18121692 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18121757 TGGACAGAGGGGTGGGATGCACAAGCCAGGGATCGACCGGGTCTCCCTCTACGTGTTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGTTGCCAATCC
* * * * * *
18121822 AGTTGCCACAACCGTCAGTCCGGTCTGATCTTAGACT-GGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
18121886 CCGACGAAACGAGTGGGCGGGTGGGCGTGCAGGCACTACGCCAGCCAGAGAGACAGGATGCGCAA
196 CCGACGAAACGAGCGGGCGGGCGGAC--G--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *** * *
18121951 ACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTTATATTTCTATGTGACAATACCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
** *
18122016 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGTAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
* * * *
18122081 GACTAGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTTC-AGATTTTTTAAAATTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGG-TTCGAGATTTTTTAAAATTTTT
* * *
18122145 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATCATCCTTGTATTTTTGTTGGCATGCATAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * **
18122210 GAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTAGCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18122275 CAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * * * *
18122340 ATTCTCAAGGTTTGATGAGAGATAGGCAGCCAATATAAGGGCCAAGTACCGGCACCCATCGTACA
646 GTTCTCGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
* *
18122405 TCATGTGCGCACACCACCCTCCGGCCCGCCCGATCGTCGGAACCCCAATGCCGCCGGCCAGG---
710 TCATGTGCGCACA-C-CCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGG-TAGGTTC
* * *
18122467 T--TCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCAT
771 TCCTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC-AGCAT
* * * * *
18122530 GGGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
835 GTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
18122586 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18122651 CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCGAGTCCCCCTCTACATGTTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGTTGCCAATCC
* * * * * *
18122716 TGCTGTCGCAACCCTCGATCTGGT-TCGATCTTATACTGGGAATAAACTCCGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCGGTCTGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * *
18122780 ACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGGGCGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
18122845 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAAAGCAATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
18122910 TTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAATTTTCATGGCAAGATGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
* * * * *
18122975 TCGTTCTCTATTTTTGATGATTTTCGAAAGTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-A
390 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * *
18123039 AATGGATTTTTGGCCCCGAACTTGGTAGACGTGATCCTTGT-TTTTTTTTGGCATGCAAAAAAAA
455 AA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
18123103 ATTCAGCCAAAAACTCGAAGTCTACAATATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
** * *
18123168 ACACTTTAACAGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
18123233 CTTGAGGTTTGATAAGTGATAAGGGGCCAATATAAGGGCCAAGGACCAGCACCCATTGCACATCA
649 CTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
* * *
18123298 TGTGCGCACACCCCTCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCACCCGTCAGGTTCTCCA
713 TGTGCGCACA-CCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT-AGGTTCT-C-
* * *
18123363 GCAATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGGACATGCCCGAACCCAGC
773 -C--T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG-AGCCAGC
* *
18123428 ATGTGCTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
833 ATGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * * * *
18123486 CTTAGACTGGGAATGGACTTTGTATGCCTAAGTCAACCCATGAAATGAACGTGCGGACGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
18123551 CGGCCAGAGGGGTGGGATGCGCAAGCC-GGGATCGGTAGGGTCCCCCTCTGTGTGCTCCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGTTGCCAATCC
* * * * * *
18123615 TACTACCACAACCCTCAGTCTGGTCTGATCTTAGACTAGAAATGAACTCTGAATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
** * *
18123680 CCGACGAAACGAGCAAGCGGGC--AC---TAC-AC--CGGCCAGAGAGATGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
18123737 TGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCTATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
18123802 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
* * *
18123867 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAACTTTTTTAC-G
391 CGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT-CGG
* * * *
18123931 AAGGAGTTTTCGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAGA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
18123996 TTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTTAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
18124061 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18124126 TCGAGGTTTGATGAGGGATAGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATG
650 TCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
* *
18124191 TGCGCACACCCCCAGGCCCCCCCCGATCGTCGGAACCCCAATGCCACCGGTAGGTTCTCCGACAA
715 TGCGCACACCCCCCGG-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTAGGTTCT-C--C--
* * * *
18124256 TACTCCGGCGATGGTGCCCTGACAAAGAAAAATACGGCACCAGCACATGCCCGAGGCCAGCATGT
774 T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA-GCCAGCATGT
* *
18124321 GCTACCGTAACCTTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
837 GCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
18124375 CTTAGACTCGAAATAAAATCCGTATGCCTAAATCAACCCATGGAACGAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18124440 CGGCCAGAGGGGCGGGATGCACAAGTCAGGGATCGATCGGGTCCCCCTCTGCCTGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGTTGCCAATCC
** * * *
18124505 TGCTGCCGTAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18124570 CCGACGAAACGAGCGGGCGGGCAGACGGGTACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCA
196 CCGACGAAACGAGCGGGCGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
*
18124635 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * *
18124700 TATGGCTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGATT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
* * *
18124765 CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGTGGTTCCAGATTTTTTAAAATTTTTTCGGA
391 CGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
* **
18124830 AGGTGTTTTGATCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
18124895 TTAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
18124960 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
18125025 CGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
651 CGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
*
18125090 TGCG--CACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG---T--TCTCC
715 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT-AGGTTCTCCTCTCC
* * * *
18125148 GGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATATGCTACC
779 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG-CCAGCATGTGCTACC
* * * *
18125213 GTAAACCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTTTG
843 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18125261 CTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18125326 CGGCCAGAGGGGAGGGATGTGCAAG-CAGGGGATCGGTCGGGTTCCCCTC-ACGTGTTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCA-GGGATCGATCGGGTCCCCCTCTACGTGTTGCCAATC
* ** * * * * *
18125389 CTACTATCACAACCCTCGGTCGGGTTTGATCTTAGACCAAGAATGAACTCCGTATGCCTAAGCGA
130 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * **
18125454 ACCGATGAAACGAGCGGGAGGGCGCGCACGTGGGCACTACGTCGGCCAGAGAGACGGGATACATA
195 ACCGACGAAACGAGCGGGCGGGCG-G-AC--GGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
*
18125519 AGCCGGGGATCGA
256 AGCCGTGGATCGA
18125532 CCGGGTCCCC
Statistics
Matches: 3374, Mismatches: 412, Indels: 107
0.87 0.11 0.03
Matches are distributed among these distances:
885 88 0.03
886 203 0.06
887 51 0.02
888 138 0.04
889 276 0.08
890 349 0.10
891 963 0.29
892 172 0.05
893 9 0.00
894 284 0.08
895 51 0.02
896 35 0.01
897 14 0.00
898 410 0.12
899 146 0.04
900 182 0.05
901 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (890 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGTTGCCAATCC
TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
CGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTAGGTTCTCCTCTCCGA
CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAGCATGTGCTACCGTA
ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18126324 original size:26 final size:26
Alignment explanation
Indices: 18126295--18126347 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18126285 TCGGTCCGAT
18126295 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18126321 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18126347 C
1 C
18126348 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18127223 original size:26 final size:26
Alignment explanation
Indices: 18127194--18127244 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18127184 CCAATCCGAT
18127194 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18127220 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18127245 TCCTAGGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18127737 original size:903 final size:896
Alignment explanation
Indices: 18125592--18128223 Score: 3733
Period size: 903 Copynumber: 2.9 Consensus size: 896
18125582 GATCCAACGA
*
18125592 GAATGAACTCCGTATGCCTAAGCTAACCGACGAAATAAGC-G-GGCGGGCGGGCGGGCACTACGC
1 GAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AAGCGGAGGCGGGCGGGCGGGCACTACGC
* * * *
18125655 CGGCCAGAGAGACCGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTGGGGACATCT
63 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT-T
* * *
18125720 TT-ATATTTCTACGTGGCAGTGCCATTTTTATGGCTTGTAAATTCATACAAT-AATCCCTTAAGC
127 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGA-CCCTTAAGC
* * * * *
18125783 CTTCACGTGAAGTTTCAAT-GCAAGATGACTCATTTTTTATTTTTCACGA-TTTTCAAAATTTTT
191 CTTCACGTGAAGTTTC-ATGGCAGGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * *
18125846 GCGATTCAGGTTTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
255 ACGGTTCAGATTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
18125911 CTTGCATTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAGGATTTTGTGA
320 CTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
18125976 CCACTTGAAAAAAGTGTCCCCATTTCAAACCCTTTAATGGCTACTGGCAGCAAAGCTGTAAAATC
385 -CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
18126041 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGG
449 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGG
* * * * * * * *
18126106 GCCAAGTACCAGCATCGATTGCACATCATGGGCACACACCCCCCTGGCCCTCCCGATCGTCGAAA
514 GCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCCTGGCCCCCCCGATCGCCGGAA
* *
18126171 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATA
579 CCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATA
* * * *
18126236 CGGCACCAGCACATGCTCGAGCCCAGCATGTGCTTTCGCAACCCTCGCTTCGGTCCGATCTTAGA
644 CGGCACCAGCACATGCCCGAGCCCAGCATGTGC-TACGCAACCCTCGGTCCGGTCCGATCTTAGA
* *
18126301 CTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACGCCAAGAA
708 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC-CCACGAA
* *
18126366 ACGAGCGCGCGGGCGCTCAGCCGGCCAGAGGGGCGGGCTGCGCAAGCCAGGGATCAGTCGGGTCC
772 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCAGTCGGGTCC
* * * * ** *
18126431 CTCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTTGGTCTGATCTTAGTATGG
837 CCCTCTGCATGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGATCTGATCTTAGTATGG
* **
18126491 GAATGAACTCCGTATGCCTAAGCCAACCAACGAAA-CGAGTAGAAGGGCGGGCGGGCACTACGCC
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGCG-G-AGGCGGGCGGGCGGGCACTACGCC
* * *
18126555 GGCTAGAGAGACGGGATGCGCAA-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTT
64 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTT
* * * * * *
18126619 CATATTGCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCATTAAGCCTT
129 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTT
* *
18126684 CACGTGAAGTTTCATGGTAGGACGAATCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
194 CACGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* *
18126749 TTCAGGATTTTTTTAAAATTTTTTT-GAAGGAGTTTTGTCCCCAAACTTGGTAGACATGATCCTT
259 TTCA-GATTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
18126813 GTAATTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGATC
323 GT-ATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA-C
18126878 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
386 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
18126943 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGTGGGCTAATATAAGGGC
451 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGC
* * **
18127008 CCAGTACCAGCAGCCATCGCACATCATGTTCGCACA-CCCCCTGGCCCCCCCGATCGCCGGAACC
516 CAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCCTGGCCCCCCCGATCGCCGGAACC
* * * * *
18127072 CTAATACCGCCAGTCAGGTTCCCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCG
581 CTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACG
* * **
18127137 GCACCAGCACATGCCCGAGCCCAGCATGTACTGCAGCAACCC-CTGGTCCAATCCGATCTTAGAC
646 GCACCAGCACATGCCCGAGCCCAGCATGTGCTAC-GCAACCCTC-GGTCCGGTCCGATCTTAGAC
* * *
18127201 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATTCCTAGGTCAACCCACGAAAC
709 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
18127266 GAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCTGTTGGGTCCCC
774 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCAGTCGGGTCCCC
* * *
18127331 CTTTGCATGCTGCCGATCCTACTGCTGTAACCCTCAGTCCGATCTGATCTTAG-ACTGG
839 CTCTGCATGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGATCTGATCTTAGTA-TGG
*
18127389 GAATGAACTCCATATGCCTAAGCCAACCGACGACACGAGCGGGCAGGCGGGCGGGCGGGCACTAC
1 GAATGAACTCCGTATGCCTAAGCCAACCGACGA-A--AGC-GG-AGGCGGGCGGGCGGGCACTAC
* *
18127454 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
61 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
18127519 TTTCATATTTCTATGTGCCAATGCCAATTTTATGGCTTGTAAATTCATATAATGGACCCTTAAGC
126 TTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGC
* *
18127584 CTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTA
191 CTTCACGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* *
18127649 CGGTTTGAGATTTTTTT-AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATA
256 CGG-TTCAGATTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
18127713 CTTGTATTTTTTTTGGCGTGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTTCAAGATTTTGTG
320 CTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
18127778 ACTATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
384 AC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
18127843 CTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
448 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAG
* * * * * **
18127908 GGGCAAATACCAGCACCCATCACACGTCATGAGCGCAGACCCCCCTCGGCCCCCCCGATCGGTGG
513 GGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCCT-GGCCCCCCCGATCGCCGG
* * * * *
18127973 AACCCTAATGCCGTCGGTTAGGTTCTCCAACGATGCTCCTGCGATGGTGCCCCAACGAAGAAAAA
577 AACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * *
18128038 TACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTA
642 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA-CGCAACCCTCGGTCCGGTCCGATCTTA
* * *
18128103 GACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAAGTCCGTATGCCTAAGTCAACCCACGA
706 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* ** * *
18128168 AACGAGCGTGGGGGCGCTCAGCCGGCCAGTTGGGCGGGATGCGTAAGCCGGGGATC
771 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATC
18128224 GACCGATAAG
Statistics
Matches: 1537, Mismatches: 169, Indels: 48
0.88 0.10 0.03
Matches are distributed among these distances:
895 1 0.00
896 2 0.00
897 7 0.00
898 274 0.18
899 315 0.20
900 227 0.15
901 1 0.00
902 57 0.04
903 408 0.27
904 9 0.01
905 234 0.15
906 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGCGGAGGCGGGCGGGCGGGCACTACGCCGG
CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCA
TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
CAGATTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACATTTG
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGAGCGCACACCCCCCTGGCCCCCCCGATCGCCGGAACCCTAAT
GCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACC
AGCACATGCCCGAGCCCAGCATGTGCTACGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCAGTCGGGTCCCCCTCTGCA
TGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGATCTGATCTTAGTATGG
Found at i:18128137 original size:26 final size:26
Alignment explanation
Indices: 18128099--18128151 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18128089 CTGGTCTGAT
18128099 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
18128125 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18128151 C
1 C
18128152 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18128475 original size:26 final size:26
Alignment explanation
Indices: 18128437--18128489 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18128427 CTGGTCTGAT
*
18128437 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACGAGGAATGAACTCCGTATG
* *
18128463 CTTAGACGGGGAATTAACTCCGTATG
1 CTTAGACGAGGAATGAACTCCGTATG
18128489 C
1 C
18128490 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACGAGGAATGAACTCCGTATG
Found at i:18129201 original size:26 final size:26
Alignment explanation
Indices: 18129165--18129220 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18129155 CCAGTCCAAT
* *
18129165 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18129191 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18129217 CTTA
1 CTTA
18129221 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18130084 original size:26 final size:25
Alignment explanation
Indices: 18130044--18130095 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
18130034 CTGGTCTGAT
*
18130044 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCATATG
18130069 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGAC-TGGAATGAACTCCATATG
18130095 C
1 C
18130096 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:18130981 original size:25 final size:26
Alignment explanation
Indices: 18130931--18130985 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 26
18130921 CCAGTCCAAT
18130931 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
**
18130957 CTTAGACTGGG-ATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18130982 CTTA
1 CTTA
18130986 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 16 0.59
26 11 0.41
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18131675 original size:892 final size:896
Alignment explanation
Indices: 18128463--18135999 Score: 9405
Period size: 892 Copynumber: 8.4 Consensus size: 896
18128453 ACTCCGTATG
* * * * *
18128463 CTTAGACGGGGAATTAACTCCGTATGCCTAAGCCAACCGATG-AA--A-C--GCGG-CGGGCAGG
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* *
18128521 CGGGTACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
18128586 TTAGGCACATATTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATACATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
18128651 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
** * * ** * *
18128716 AAACTTTTTACGGTTCGATATTTTTTAAAATTTTTTCGGAAGGATTTTTTACCCCAAACATAGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
** *
18128781 GACGTGATCCTTGTATTTTTGTTGGCATGCACCTAAAAATTCAGCTAAAAAGTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
18128846 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGACAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
18128911 TTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
18128976 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCTCGGCACCCCC
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGC-CCCCC
* *
18129041 GATCGTCGGAACCCCAATGCCACCGGTCAGG---T-TCTCCGACGATGGTGCCCCGACGAAGAAA
584 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTATCTCCGGCGATGGTGCCCCGACGAAGAAA
* * * * * *
18129102 TATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCAATCT
649 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCT
* * *
18129167 TAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCAC
714 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * *
18129232 GAAACGAGCATGCGGGCGCTCAGCAGGCC-GAGGGGCGGGATGCGGAAGCCGGGGATCGGCCGGG
779 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGG
* * *
18129296 TCCCCCACTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGAT
844 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
*
18129349 CTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACCGGCGGG
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * * * *
18129414 CAGGCACTACGCCGGCTAGAGAGACGGGTTGCGTAAGCCGTGGTTCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18129479 TTAGGCACAGT-TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATG
131 TTAGGCACA-TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
18129543 GTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTC
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * *
18129608 AAAACTTTTTACGGTTGGGGATTTTTTAAATTTTTTTC-AGATGGAGTTTTGGCCCTAAACTTGG
260 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGG
* * * * *
18129672 TAAACATGATCCTTCTATTCTTGTTGGCATGCACAAAAAAATTCAGCT----ACT----G-GCAC
324 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * **** * * * *
18129728 CA-A-------ACC---TG-TAAAA-TCTACTGGCTACTGGCACTTTAATGGCTACTGGCAACAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * **
18129780 ACCTGTAAAATCTCAAATGCTTTTTAAGGCGTTGTGAGTTCTCGAGGTTTGATGAGGGATACAGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
18129845 GCCAATATAAGGG-CAAGTACCAGCACCCATCGCTCATCATGTGCGCACA-CCCCCCAGCACCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCC
* * * * *
18129908 CGGTCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGTCCCGG
583 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT------AT-CTCCGGCGATGGTGCCCCGA
* * * ** *
18129973 CTAAGAAAAATACGG-ATCCAGCACATGCCCGAGCCCAGCATGTGCTGTCAAAACCCTCGGTCTG
641 CGAAGAAAAATGCGGCA-CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * *
18130037 GTCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCATATGCCTAAG
705 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
18130101 TCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGTCAGGATGCACAAGACGGGGA
770 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
** ** * * * * *
18130166 TCAACCGGGTCCCCCTCTGCGTGCTATCGATCTTGCTACAGTAACCCTCAGTCTGGTCTGAT
835 TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * *
18130228 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGGAACGAGC--G-GG-TGGGCGGG
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * * *
18130289 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCTGTGGATTGGTAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*** * * **
18130354 TTAGGCACATCTTCATATTTCTATGTGCCACTGCTATTTTTATGGCTTGTAAATTTGTACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
**
18130419 TCCCTTAAGCCTTCACGTG-AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * * * * ** *
18130483 CAACTCTTTGCAGTTCGGGATTTTTTAAAATTTTTTC-AGAAGGATTTTTATCCCCAAACTT-TT
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGT
* * * *
18130546 AAAAGTGATCCTTGTATTTTTGTTGGCATTCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
18130611 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18130676 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
18130741 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGGCACACCCCCCCGGCCCCCCT
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-
* * * * *
18130806 AATCATCGGAACCACAATGCCGCTGGTCAGGTT-T-T-TCCGGTGATGGTGCCCCGACGAAGAAA
584 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTATCTCCGGCGATGGTGCCCCGACGAAGAAA
* * * * *
18130868 AATGTGGTACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCAATCT
649 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCT
* * * *
18130933 TAGACTGGGAATGAACTCCATATGCTTAGACTGGG-ATGAACTCTGTATGCTTAAGTCAACCCAT
714 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
18130997 GAAACGAGCGTGCGGGCGTTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGGTC-G
779 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GGCCGG
* * * *
18131061 GTCCCCCTCTGCGTGTTGCCGATCCTACTGTCGCAACCCTCGGTCCGGTCTGAT
843 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
*
18131115 CTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
*
18131180 CGGGCACTACGCCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18131245 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTATTGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
18131309 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACAATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * * *
18131374 AAACTTTTTACGGTTGGGGATTTTTAAAAATTTTTTCTAATGGAGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
18131439 GCCGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTCTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
18131504 GATTTTGTGACCTTTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTCGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
18131569 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
18131634 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCTCCCGGCCCCCCG
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCCG
** * * *
18131699 ATCACCGGAACCGCAATGCCGCCGGTCAGGTTCTATGATGATGCTCCGACGATGGTGCCCCGAGG
585 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-----T-AT-CTCCGGCGATGGTGCCCCGACG
* * * * * *
18131764 AAGAAAAATGCGCCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGGTT
643 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
*
18131829 CGATCTTACACTGGGAATGAACTCCGTATGCTTAGATTGGGAAGGAACTCTGTATGCTTACACTA
708 CGATCTTAGACTGGGAATGAACTCCGTATGC-----TT----A-G-A--C----TG---------
* * * * * * *
18131894 GGAATGAACTCAGTATGCCTAAATCAACCCATGAAACGAGCGTGCGGGTGCTCAGCTGGCTAGAC
747 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
** * * * * *
18131959 GGGCGGGATAAGCATGCCAGGGATCGGCCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCGT
812 GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGC
* *
18132024 AGCCCTCGATCTGGTCCT-AT
877 AACCCTCGGTCTGGT-CTGAT
* *
18132044 CTTATACTGGGAATGAACTCAGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * *
18132109 CGGGCACTACGCCAGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
18132174 TTAGGCACATCTTCATATTTCTACGTGCCACTACCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
18132239 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCACGATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * * * * * * * *
18132304 AAACTTTTTGCCGTTCAGGATTTTTTAAAATTTTTTTGAAAGCAATTTTGGCCCGAAAGTTGGCA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* *
18132369 GACGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
18132434 GATTTTGTGACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
391 GATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
18132499 CCTATAAAATCTCAAATGCTCTCTAAGGGGGTGTGAGTTCTCGA-GTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
18132563 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATTTGCACACA-CCCCCCGGCCCCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCC
* * * * *
18132627 GATCGCCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGTTCCGGCGATGGTGCCCCGAC
584 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT------AT-CTCCGGCGATGGTGCCCCGAC
* * *
18132692 GAAGAAAAATGCGGCACCAGCACATGCCCAAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGT
642 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * *
18132757 CCAATCTTAGACTGGGAATTAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
707 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
18132822 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGGCGGGATGCACAAGTCGGGGATC
772 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * *** * * *
18132887 GGCCGGGTCCCCCTCTGTGTGCAGCCGATCTTGCTATTGCAACCCTCAGTCGGGTCTAAT
837 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * **
18132947 CTTAGACTGGGAATGAACTCCA-TATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGTGGGCGG
1 CTTAGACTGGGAATGAACT-CAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGG
** * ** ** *
18133011 GCGGGTGCTGCTTCGATCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
65 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
18133076 TTTAGGCACATCTTCATATTTCTACTTGCCAATTCCTTTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
18133141 GTCCCTTAAGCCTTCACTTGAGGTTTCATGGCAAGACGACTCGTTTTTTGTTTTTCATGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTT
** * * *
18133206 TGAAACTTTTTACGGTTTGGGATTTTTTAAACTTTTTTC-AGAAGGAGTTTTGGCACCAAACTTG
259 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTG
* * ** * *
18133270 GTAGACATGATCCTTGAATTTTTGTTGGCATGCATGAAAAAATTCAGCTAAAAACTCGGAGTGGA
323 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
18133335 CAAGATTTTGTGACCATCTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
18133400 AACCTGTAAAATCTCAAATGCTTTTTAAGGAGGTGTGAGTTCTCGAGATTTGATGAGAGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
18133465 GGCCAATATAAGGGCCAGGTACCAGCACCCTTCGCACATCATGTGCGTACACCCCCCCGAG-CCT
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCC
* * * *
18133529 CCGATCATCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTCG
582 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGG-T-T-C--T-AT-CTCCGGCGATGGTGCCCCG
** * * * *
18133594 ACGAAGAAAAATGCGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGGCACAACCCTCGTTCTG
640 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
*
18133659 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
705 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * ** *
18133724 TCAACCCAAAAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGAAATGCGCAAGTCGGGGA
770 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
** * * * * **
18133789 TCGATCGGGTCCCCCTCTGCCTGCTGCCGATCTTGCTGCCACAACCCTCGGT-TCAGTCCAAT
835 TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTGAT
* * * * *
18133851 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-TGGCCGAGCGGGTGG
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGA-CGGGCGG
* * * * *
18133915 GCGAGCACTACGCCGGCCAGAGATATGGGATGCGCAAGTTC-TGGATCGGTAGGGTGGTAGG-GG
65 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CCGTGGATCGATAGGGTGGTAGGTGG
* *
18133978 GTTTGGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
129 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
18134043 GGTCCCTTAAGCCATCATGTGAAGTTTCATGGCAGGACGACTCGGTTTCTATTTTTCATGATTTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * *
18134108 -TAAACTTTTTATGGCTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGG
259 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
* * *
18134172 TAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATGGAAGTGTAC
324 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * *
18134237 AAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGTTATTGGTAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
18134302 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
18134367 GCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGTGCACA---------CCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * *
18134423 GATCGTCGAAACCCCAATGCGGCCGGTCAAGTTCGCCGATAATGCTCCGACGATGGTGCCCCGAC
584 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTT---C--T-AT-CTCCGGCGATGGTGCCCCGAC
* * *
18134488 -AAGAAAAAATGTGGCACCAGCACATGCCCGTA-CCCAGCATCTGCTGCCGCAACGCTCGGTCCG
642 GAAG-AAAAATGCGGCACCAGCACATGCCCG-AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * *
18134551 GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGCATGGCTAAG
705 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * ** * ** * *
18134616 TCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGGTAAGAGGAGCGGGATGCTTAAGTCGAGGA
770 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * * * **
18134681 TCAGCCGGGTCCCACTCTGCATGCTGCGGATCCTGCTACTGTAACCCTTGGTCTGGTCCCAT
835 TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * *
18134743 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGC--G-GG-CGGGCGGG
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * * *
18134804 CAGGCACTACGCCAGCCAAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
18134869 TTAGGTACATCTTCATATTTCTACATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
18134934 TCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * * *
18134999 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGAA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
18135064 GACGTGATCCTTGTATTTTTTTTGTCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
18135129 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGACTACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
18135194 CTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCAAGGTTTGATGATGGATAGAGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
18135259 CAATATAAGGGCTAAGAACCAGCACCCATCTCACATCATGTGCGCACA-CCCCCCGACCCCCCGA
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGA
* * * * **
18135323 TCGTCGGAACCCCAATGCGGCCGATCAAGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGGTGA
586 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-T-----AT-CTCCGGCGATGGTGCCCCGACGA
** * * *
18135388 AGAAAAATGCGGCACTGGCATATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCC
644 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
* * *
18135453 GATCTTTGTCTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
709 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
18135518 CCCACGAAACGAGCATGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA
774 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * * * * * * * *
18135583 TCAGGTCCCACTCTGTGAT-CTACCAATCCCGCTGTCGTAACCCTCAGTCCGGTCCGAT
839 CCGGGTCCCCCTCTGCG-TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * *
18135641 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACTGACG-AA--A-----C-GA---GCGGG
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
* * * * *
18135694 CGGGCACTACGCTGGCCAGAGAGACGGGAAGCGCAAGCCGTGGATCGATATGATGGTAGATGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
18135759 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
**
18135823 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
*
18135888 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-CCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* *
18135952 GACGTGATCCTTGTATTTTTGTTGGTATGCATAAAAAAATTCAGCTAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
18136000 CCTGTAAACC
Statistics
Matches: 5770, Mismatches: 731, Indels: 298
0.85 0.11 0.04
Matches are distributed among these distances:
868 39 0.01
869 5 0.00
870 34 0.01
871 97 0.02
872 4 0.00
873 44 0.01
874 92 0.02
875 136 0.02
876 5 0.00
877 4 0.00
878 82 0.01
879 203 0.04
881 1 0.00
882 4 0.00
883 2 0.00
884 4 0.00
885 1 0.00
886 38 0.01
887 254 0.04
888 139 0.02
889 266 0.05
890 428 0.07
891 193 0.03
892 579 0.10
893 290 0.05
894 6 0.00
895 103 0.02
896 40 0.01
897 38 0.01
898 305 0.05
899 4 0.00
900 1 0.00
901 276 0.05
902 107 0.02
903 553 0.10
904 564 0.10
905 9 0.00
906 2 0.00
907 3 0.00
909 1 0.00
911 1 0.00
912 3 0.00
913 1 0.00
915 1 0.00
916 1 0.00
918 1 0.00
919 3 0.00
920 1 0.00
924 3 0.00
928 10 0.00
929 419 0.07
930 283 0.05
931 87 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGA
TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTATCTCCGGCGATGGTGCCCCGACGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTC
CCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
Found at i:18131869 original size:26 final size:26
Alignment explanation
Indices: 18131833--18131911 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
18131823 CTGGTTCGAT
*
18131833 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCAGTATG
* * * *
18131859 CTTAGATTGGGAAGGAACTCTGTATG
1 CTTACACTGGGAATGAACTCAGTATG
*
18131885 CTTACACTAGGAATGAACTCAGTATG
1 CTTACACTGGGAATGAACTCAGTATG
18131911 C
1 C
18131912 CTAAATCAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCAGTATG
Found at i:18132791 original size:26 final size:26
Alignment explanation
Indices: 18132762--18132814 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18132752 CTGGTCCAAT
* *
18132762 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18132788 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18132814 C
1 C
18132815 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18133695 original size:26 final size:26
Alignment explanation
Indices: 18133666--18133718 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18133656 CTGGTCCGAT
*
18133666 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18133692 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18133718 C
1 C
18133719 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18137179 original size:26 final size:26
Alignment explanation
Indices: 18137150--18137200 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18137140 GATCTGATCC
*
18137150 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
18137176 TAGACTTGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18137201 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18138064 original size:324 final size:324
Alignment explanation
Indices: 18137475--18138126 Score: 1277
Period size: 324 Copynumber: 2.0 Consensus size: 324
18137465 GTTTAGGCAC
18137475 ATCTTCATATTTCTACGTGCCGATGCCATTTTTATGGCTTGTAAATTTGTACCATGGTCCCTTAA
1 ATCTTCATATTTCTACGTGCCGATGCCATTTTTATGGCTTGTAAATTTGTACCATGGTCCCTTAA
18137540 GCCTTGACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTT
66 GCCTTGACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTT
*
18137605 TACGGTTCGAGATTTTTTAAAATTTTTTTCGAAGGATTTTTGGCCCCAAACTTGGTAGACATGAT
131 TACGGTTCGAGATTTTTTAAAATTTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
18137670 CCTTGTATTTTTTTTGGCATGTACAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATTTTGT
196 CCTTGTATTTTTTTTGGCATGTACAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATTTTGT
18137735 CACCATTTGAAAAAATTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAA
261 CACCATTTGAAAAAATTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAA
18137799 ATCTTCATATTTCTACGTGCCGATGCCATTTTTATGGCTTGTAAATTTGTACCATGGTCCCTTAA
1 ATCTTCATATTTCTACGTGCCGATGCCATTTTTATGGCTTGTAAATTTGTACCATGGTCCCTTAA
18137864 GCCTTGACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTT
66 GCCTTGACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTT
* *
18137929 TACGGTTCGGGATTTTTTAAACTTTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
131 TACGGTTCGAGATTTTTTAAAATTTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
18137994 CCTTGTATTTTTTTTGGCATGTACAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATTTTGT
196 CCTTGTATTTTTTTTGGCATGTACAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATTTTGT
18138059 CACCATTTGAAAAAATTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAA
261 CACCATTTGAAAAAATTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAA
18138123 ATCT
1 ATCT
18138127 CAAATGCGCT
Statistics
Matches: 325, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
324 325 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (324 bp):
ATCTTCATATTTCTACGTGCCGATGCCATTTTTATGGCTTGTAAATTTGTACCATGGTCCCTTAA
GCCTTGACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTT
TACGGTTCGAGATTTTTTAAAATTTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
CCTTGTATTTTTTTTGGCATGTACAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATTTTGT
CACCATTTGAAAAAATTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAA
Found at i:18138383 original size:26 final size:26
Alignment explanation
Indices: 18138354--18138406 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18138344 CCGGTTTGAT
18138354 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18138380 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18138406 C
1 C
18138407 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18139295 original size:26 final size:26
Alignment explanation
Indices: 18139246--18139296 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18139236 GATCTGATCT
*
18139246 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCATATGCG
*
18139272 TAGACTGGGAATGAACTCTATATGC
1 TAGACTGGGAATGAACTCCATATGC
18139297 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCG
Found at i:18140178 original size:26 final size:26
Alignment explanation
Indices: 18140149--18140201 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18140139 TTGGTCCGAT
18140149 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18140175 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18140201 C
1 C
18140202 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18140797 original size:903 final size:899
Alignment explanation
Indices: 18137821--18142035 Score: 5829
Period size: 893 Copynumber: 4.7 Consensus size: 899
18137811 CTACGTGCCG
** * * *
18137821 ATGCCATTTTTATGGCTTGTAAATTTGTACCATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGG
1 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGG
* * **
18137886 CAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTT-ACGGTTCGGGATTTTTTAAA
66 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAA
* *
18137950 CTTTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAT
130 -ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
* * * *
18138014 GTACAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAATTGTC
194 GCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
18138079 CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCGCTTTAA-GG
259 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * *
18138143 GGTGTGAGTTCTTGAGGTTTGATGAGGGGTAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCA
324 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCA
* *
18138208 TCA-CACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATTG-TAG--G---AA---C-CC--CA
389 TCAGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCAGAAGCCCAATGCCGCCGTCA
* * * *
18138259 A--TGT-C-GTCG--G-T-CAG-G-T-TTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCC
454 AGTTCTCCGGT-GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCC
* * ** * * **
18138313 CGAACCCGGCATGTGCTGTTG-TACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGT
518 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
18138377 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
583 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* *
18138442 AATCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCCTCTGTGTGTTGTAGA
648 AACCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGT-CCCCTCTGCGTGTTGTAGA
18138507 TCCTGCTGTCGCAACCCTCAGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
712 TCCTGCTGTCGCAACCCTCAGTC-AGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
*
18138571 CCAACCGACAAAATGAGCAGGCGGGCGGGCGGGCACTACGCCGGCTCAGAGAGACGGGATGCGCA
776 CCAACCGACAAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGC-CAGAGAGACGGGATGCGCA
18138636 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCATGACA
840 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCATGACA
* *
18138696 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAG
1 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGG
* * *
18138761 CAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTAAAA
66 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAA
** * * * * * *
18138825 ATTTTTTTGGATGGGGTTTCGGCCCCAAATTTGGTTGACGTGATCCTTGTATTTTTCTTGGCATG
130 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
* * *
18138890 CACAAAAAAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTC
195 CACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
18138955 CCATTTCAGACAATTTAATGGCTGCTGGCAGCAAACCCGTAAAATCTAAAATGCTCTTTAAGGGG
260 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * * *
18139020 GTGTGAGTACTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCA-TACCTA
325 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CTAGCACCCA
* * * *
18139084 TC-GCACATCATGTGCGTACACCCCCCCGGCCCCCCCGATTG-CTGAAACCCCAAT---GCCGTC
389 TCAGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCAG-AAGCCCAATGCCGCCGTC
* * * **
18139144 --G--ATCAGGT--T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCC
453 AAGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCC
* * * * * * * * * *
18139202 CAATCTCAGCGTATGCTGTCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGT
518 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
18139267 ATGCGTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGTGCTC
583 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * ** * * * * **
18139332 AGCCGGGCCAGAGGGGTGGGATGCGTAAGCTGGGGATCGGTCGGGTCCCCTTTGCGTGCTGCCGA
648 AACC-GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCTCTGCGTGTTGTAGA
* ** ** * *
18139397 TCCTGTTACCATAACCCTCGGTCCGAT-TGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
712 TCCTGCTGTCGCAACCCTCAGTCAGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
18139461 CCAACCGACGAAACGAGCGAGTGGGCGGGTGGGCGGGCACTACGTCGACCAGAGAGACGTGATGC
776 CCAACCGACAAAACGAGC-A---GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
** * * * *
18139526 GTTAG-TGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTGATAATTCTATG--TGGC
837 GCAAGCT-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTAT-ATT-TTTGCATGAC
18139588 A
899 A
*
18139589 ATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGATGTTTCATGG
1 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGG
* * **
18139654 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTTAGGATTTTTTAAAA
66 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAA
*
18139719 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGATGC
131 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
* *
18139784 ACAAAAAAATTTAGCCAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCC
196 ACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
18139849 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGG
261 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
18139914 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCA-C
326 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATC
*
18139978 AGCACATCATGTGCGCACACCCCCTCTGGCCCCCCCGATCGCCAGAAGCCCAATGCCGCCGGTCA
391 AGCACATCATGTGCGCACACCCCC-CCGGCCCCCCCGATCGCCAGAAGCCCAATGCCGCC-GTCA
18140043 AGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCC
454 AGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCC
* *
18140108 GAGCCCAGCACGTGCTACCGCAACCCTCGG-CTTGGTCCGATCTTAGACTGGGAATGAACTCCGT
519 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-TGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
18140172 ATGCTTAGACTGGGAATGAACTCTGTATGCCAAAGTCAACCCACGAAATGAGCGTGCGGGCGCTC
583 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
*
18140237 AACCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCCTCTGTGTGTTGTAGA
648 AACCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGT-CCCCTCTGCGTGTTGTAGA
18140302 TCCTGCTGTCGCAACCCTCAGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
712 TCCTGCTGTCGCAACCCTCAGTC-AGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
*
18140366 CCAACCGACAAAATGAGCAGGCGGGCGGGCGGGCACTACGCCGGCTCAGAGAGACGGGATGCGCA
776 CCAACCGACAAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGC-CAGAGAGACGGGATGCGCA
18140431 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCATGACA
840 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCATGACA
18140491 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGG
1 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGG
*
18140556 CAAGACGACTCGTTTTTTTATTTTTCATGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAA
66 CAAGACGACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAA
* * * ** *
18140621 ATTTTCTCGGAAGGCGTTTTGGCCCCAAACTTGGTAGTTGTGATCCTTGTATTTTTGTTGGCATG
130 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
* * * *
18140686 CACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCC
195 CACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
18140751 CCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGG
260 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
18140816 GTGTGAGTTCTCGAGGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-TCAGCACGC
325 GTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACT-AGCACCC
* * *
18140880 ATCA-CACATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGCCGGAA-CCCTAATGCCGTCAG
388 ATCAGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCAGAAGCCC-AATGCCG-CCG
* ** * * ** *
18140943 TCAGGTTCTCCGACGATGCTCCGGTGATGGTGCACCGGTGAAGAAAAATGCGGCACCAGCACATG
451 TCAAGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG
* * * *
18141008 CCCGAGCCCAGCATGTGCTGCTGCAA-CATCGGTCTGGTCCGATCTTAGACTCGGAATGAACTCT
516 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
18141072 GTATGCTTAGACTGGGAATAAACTCCGTATTCCTAAGTCAACCCACGAAACGAGCGTGCGGGCAC
581 GTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * *
18141137 TCAACCGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGG-CGGGTCCCCTCTGCGTG-CG-AC
646 TCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCTCTGCGTGTTGTA-
* * * * *
18141199 TGATCCTACT-ACTGCAAGCCTCAGTCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCT
710 -GATCCTGCTGTC-GCAACCCTCAGTCAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** * ** *
18141263 AAGCCAACCGACGAAACGAGCGGGCGGGTTGGTGAACACCACGCCGGCCAGAGAGACGGGATGCG
773 AAGCCAACCGACAAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * * * * *
18141328 AAAGC-GATGGATCGATAGGCTGGTAGGTGGGTTTAGGTACATCTTCATAATTCTGCATGGCA
838 CAAGCTG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCATGACA
18141390 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGG
1 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGG
* * **
18141455 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTTAGGATTTTTTAAAA
66 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAA
*
18141520 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGATGC
131 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
* *
18141585 ACAAAAAAATTTAGCCAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGT-CC
196 ACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
18141649 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGG
261 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
18141714 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCA-C
326 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATC
*
18141778 AGCACATCATGTGCGCACACCCCCTCTGGCCCCCCCGATCGCCAGAAGCCCAATGCCGCCGGTCA
391 AGCACATCATGTGCGCACACCCCC-CCGGCCCCCCCGATCGCCAGAAGCCCAATGCCGCC-GTCA
*
18141843 AGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCC
454 AGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCC
* *
18141908 GAGCCCAGCACGTGCTACCGCAACCCTCGG-CTTGGTCCGATCTTAGACTGGGAATGAACTCCGT
519 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-TGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
18141972 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCT
583 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
18142036 TAGCCAGCCA
Statistics
Matches: 2949, Mismatches: 313, Indels: 133
0.87 0.09 0.04
Matches are distributed among these distances:
874 6 0.00
875 278 0.09
876 74 0.03
877 24 0.01
883 2 0.00
884 3 0.00
885 1 0.00
886 4 0.00
887 1 0.00
888 1 0.00
889 50 0.02
890 185 0.06
891 36 0.01
892 4 0.00
893 434 0.15
894 48 0.02
895 7 0.00
896 68 0.02
897 190 0.06
898 265 0.09
899 150 0.05
900 108 0.04
901 30 0.01
902 276 0.09
903 352 0.12
904 106 0.04
905 244 0.08
906 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (899 bp):
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAA
TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
ACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATC
AGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCAGAAGCCCAATGCCGCCGTCAAG
TTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCTCTGCGTGTTGTAGATCCT
GCTGTCGCAACCCTCAGTCAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACAAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCATGACA
Found at i:18141080 original size:26 final size:26
Alignment explanation
Indices: 18141051--18141101 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18141041 CTGGTCCGAT
* *
18141051 CTTAGACTCGGAATGAACTCTGTATG
1 CTTAGACTCGGAATAAACTCCGTATG
*
18141077 CTTAGACTGGGAATAAACTCCGTAT
1 CTTAGACTCGGAATAAACTCCGTAT
18141102 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTCGGAATAAACTCCGTATG
Found at i:18141978 original size:26 final size:26
Alignment explanation
Indices: 18141949--18142001 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18141939 TTGGTCCGAT
18141949 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18141975 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18142001 C
1 C
18142002 CTAAGTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18144492 original size:26 final size:26
Alignment explanation
Indices: 18144463--18144515 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18144453 TTGGTCCGAT
18144463 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18144489 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18144515 C
1 C
18144516 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18146588 original size:890 final size:887
Alignment explanation
Indices: 18142053--18147666 Score: 6691
Period size: 904 Copynumber: 6.3 Consensus size: 887
18142043 CCAATGGGGT
* *
18142053 GGGCACTACGCCAGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGT-GGCTGGGT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG-TGGGT
** * *
18142117 TTAGGCACATCTTCATATTTCTGCATGCC-A--CCATTTTTATGGCTTGTAAATTCGTACAACGG
65 TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
18142179 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
130 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TATTTTCA
* *** * * * *
18142244 AAACTTTTTACAG-TCAAAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGGTA
194 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAAGAGCTTTGGCCCCAAACTTGGTA
* *
18142308 GACGTGATCCTTGTATTTTCT-TTGGCATGCATAAAAGAATTCAGCTAAAAACTCGAAGTGTACA
258 GACGTGATCCTTGTATTTT-TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
** *
18142372 AGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
322 AGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
18142437 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGA
387 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
18142502 CCAATATAAGGGCCAAGTACTAGCACCCAAT-GCACATCATGTGTGCACAGCCCCTCGGGCCCCC
452 CCAATATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCACA-CCCCCCGGGCCCCC
* * * * * * * * *
18142566 CGATCGCCGGAACCCCAATGCCGCCGGTCAAGT-T-CTCCGACGATGGAGCCCCGACGAAGAATA
515 TGATCGTCGGAACCCCAATGTCGCCGGTCAAGTATGCTCTGGCGAT-G-GTCCTGGCGAAGAAAA
* * * *
18142629 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAACCTCAGT-C-T--G------
578 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGTCCGATCTTA
* * * *
18142684 GTCT--G-AT---CT---TA-GATTAG-C----AATGAACT-TCCTATGCCTAAGTCAACCCACG
643 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCATG
* * * * ** *****
18142733 AAACGAGCGAGCGGGCGC-CAAGCCGGTCAGAGGGGCGGGATGCGCAAGCTAGGGATTTATAGGG
707 AAACGAGCGTGCGGGCGCTC-AGCCGGCCAGAGGGGCTGGATGAGCAAGCCGGGGATCCGCCGGG
* * **** * **
18142797 TCCACC-TCTGCGTGCTGCCAATCCTGCTACCACCACCCTTGGTCTGGTCCGATCTTAGACTGGG
771 TCC-CCTTCTGCGTGCTGTCGATCCTGCTACTGTAACCCTCGGTCCAGTCCGATCTTAGACTGGG
* * * * *
18142861 AATGAACTACGTATGCTTGAGCCAACCGATGAAAC-GAGG-GGGC-GGT---C
835 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGGGGCGGGCGGGTGGGC
* * * *
18142908 GGGCACTACGCCAGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGCTGGGTT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
**
18142973 TAGGCACATCTTCATATTTCTGCATGCC-A-G-CATTTTTATGGCTTGTAAATTCATACAATGGT
66 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
18143035 CCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACAACTCGTTTTCTATTTTTCACTATTTTCAA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TATTTTCAA
* * *
18143100 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA-CTTTTGGCCCCAAACGTGGTA
195 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAAGAGC-TTTGGCCCCAAACTTGGTA
* *
18143164 GACGTGATCCTTGTATTTTTGTCGGCATGCACCAAAAAAA-TCAGCTAAAAACTCGAAGTGTACG
258 GACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
** * * *
18143228 AGATTTTACGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACTAGAAGCAAA
322 AGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
18143293 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGG
387 CCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
** *
18143358 GTAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCC-GGCCCCCT
451 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCT
** * *
18143422 CGATCGTCGGAACCCCAATGCCGTCGGCCAGGTTCTCCTGTGATGCTCCGACGATGGTGCCCTGG
516 -GATCGTCGGAACCCCAAT---GTC-GCC-GG---TCAAGT-ATGCTCTGGCGATGGT--CCTGG
* * * *
18143487 CGAAGAAAAATGCGTCACCAACACATGCCCGAGCCTAGCATGTGCTGTCACAACCCTTC-GTCCG
569 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC-TCGGTCCG
* *
18143551 ATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTTGACTGGGAATGAACTCTGTATGCCTAAG
633 -TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * *
18143616 TCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGG-TGGGATGTGCAAGCCGGGG
697 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCT-GGATGAGCAAGCCGGGG
* * * * * *
18143680 ATCGGCCAGAT-CCCTCTCTGCGTGCTGTCAATCCTGCTACTGTAACCCTCGGTCTAGTCTGATC
761 ATCCGCCGGGTCCCCT-TCTGCGTGCTGTCGATCCTGCTACTGTAACCCTCGGTCCAGTCCGATC
* *
18143744 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCGGGTGGGC
825 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AG-GGGCGGGCGGGTGGGC
* * *
18143809 GGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGAATCGATAGAGTGGTAGGTGGGTT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
18143874 TAGGCACGTCTTCATATTTCTGTGTTCCGAA-GCCATTTTGATGGCTTGTAAATTCATACAATGG
66 TAGGCACATCTTCATATTTCTGTGTGCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * ** **
18143938 TCCTTTAAGCCTTCACGTGAAGTTGCATTTCAAGACGACTCGTTTTCTATTTTTCATAATTTTTG
130 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT-ATTTTCA
18144003 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAAGAGCTTTGGCCCCAAACTTGGTAG
194 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAAGAGCTTTGGCCCCAAACTTGGTAG
* *
18144068 ACGTGATCCTTGTATATTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTATAA
259 ACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
18144133 GATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
323 GATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
18144198 CTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
388 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
18144263 CAATATAAGGGCCAAGTACTAGCACCCA-CAGCACATCATGTGCGCACACCCCCTCTGGCCCCCC
453 CAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGCACACCCCC-C-GGGCCCCC
* * * * * * * *
18144327 CGATCGCCAGAAGCCCAATGCCGCCGGTCAAGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGA
515 TGATCGTCGGAACCCCAATGTCGCCGGTCAA--------GT-ATGCTCTGGCGATGGT--CCTGG
* * ** **
18144392 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCACGTGCTACCGCAACCCTCGGCTTGG
569 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGG-TCCG
*
18144457 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
633 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * *
18144522 CAACCCATGAAACGAGCAG-GCGGGCGCTCTGCCGGCCAGAGGGGCGGGATGCA-TAAGCCGGGG
698 CAACCCATGAAACGAGC-GTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATG-AGCAAGCCGGGG
* * * * * *
18144585 AT-CGACCGGGTCCCC-TCTACATGCTGTCGATCCTGCT-GTCGTAACCCTCAGTCCGGTCTGAT
761 ATCCG-CCGGGTCCCCTTCTGCGTGCTGTCGATCCTGCTACT-GTAACCCTCGGTCCAGTCCGAT
* * * * *
18144647 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAAC--GAGCGGGCAGGCGGGC
824 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGGGGCGGGCGGGTGGGC
*
18144709 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
18144774 TAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
66 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
18144839 CCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACAACTCGTTTTCTATTTTTCACTATTTTCAA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TATTTTCAA
* * *
18144904 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA-CTTTTGGCCCCAAACGTGGTA
195 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAAGAGC-TTTGGCCCCAAACTTGGTA
* *
18144968 GACGTGATCCTTGTATTTTTGTCGGCATGCACCAAAAAAA-TCAGCTAAAAACTCGAAGTGTACG
258 GACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
** * *
18145032 AGATTTTACGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTAGAAGCAAA
322 AGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
18145097 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
387 CCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
18145162 GCAAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGTACACCCCCC-GGCCCCCT
451 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCT
* ** * *
18145226 CGATCGCCGGAACCCCAATGCCGTCGGCCAGGTTCTCCGGTGATGCTCAGACGATGGTGCCCTGG
516 -GATCGTCGGAACCCCAAT---GTC-GCC-GG---TCAAGT-ATGCTCTGGCGATGGT--CCTGG
* * *
18145291 CGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCTACCATGTGCTGTCGCAACCCTTC-GTCCG
569 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC-TCGGTCCG
* *
18145355 ATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTTGACTGGGAATGAACTCTGTATGCCTAAG
633 -TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * *
18145420 TCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGG-TGGGATGTGCAAGCCGGGG
697 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCT-GGATGAGCAAGCCGGGG
* * * * *
18145484 ATCGGCCAGAT-CCCTCTCTGCGTGCTGTCGATCCTGCTACTGTAACCCTCGGTCTAGTCTGATC
761 ATCCGCCGGGTCCCCT-TCTGCGTGCTGTCGATCCTGCTACTGTAACCCTCGGTCCAGTCCGATC
* *
18145548 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCGGGTGGGC
825 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AG-GGGCGGGCGGGTGGGC
* * *
18145613 GGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGAATCGATAGAGTGGTAGGTGGGTT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
18145678 TAGGCACGTCTTCATATTTCTGTGTTCCGAA-GCCATTTTGATGGCTTGTAAATTCATACAATGG
66 TAGGCACATCTTCATATTTCTGTGTGCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * ** **
18145742 TCCTTTAAGCCTTCACGTGAAGTTGCATTTCAAGACGACTCGTTTTCTATTTTTCATAATTTTTG
130 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT-ATTTTCA
18145807 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAAGAGCTTTGGCCCCAAACTTGGTAG
194 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAAGAGCTTTGGCCCCAAACTTGGTAG
* *
18145872 ACGTGATCCTTGTATATTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTATAA
259 ACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
18145937 GATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTACTGGCAGCAAAC
323 GATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
18146002 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTTGAGGTTTGATGACGGATAGGGGGC
388 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
18146067 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCCGGGCCCCCTG
453 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGGCCCCCTG
* * *
18146132 ATCGTCGAAACCCTAATGTCGCCGGTCAAGT-T-CTCTGGCGATGGT-CTAGCGAAGAAAAATGC
517 ATCGTCGGAACCCCAATGTCGCCGGTCAAGTATGCTCTGGCGATGGTCCTGGCGAAGAAAAATGC
* * **
18146194 GGCACCAGCACATGCCCGACCCCAGAATGTGCTGTCGCAACCCTCGGTCCAGTCTAATCTTAGAC
582 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCC-GTCCGATCTTAGAC
* * *
18146259 TGGGAATGAACTCCGTATGCTTACAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
646 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAC
* * * **
18146324 GAGCGTGCGGGCACTCAGCCTGCTAGAGGGGCTGGATGAGCAAGCCGGGGATCCGTTGGGTCCCC
711 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATGAGCAAGCCGGGGATCCGCCGGGTCCCC
* * ** * * * * ** * * *
18146389 TTTTGTGTGCTACCGATCTTGCTGCTGCAACCTTCAATCCGGTCCAATCTTAGACTAGGAATGAA
776 TTCTGCGTGCTGTCGATCCTGCTACTGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAA
18146454 CTCCGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCGGGTGGGC
841 CTCCGTATGCCTAAGCCAACCGACGAAAC-AG-GGGCGGGCGGGTGGGC
* * * **
18146503 GGGCGCTACGTCGGCCAGAGAAACATGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * **
18146568 TATGCGCATCTTCATATTTCTGTGTGCCAATGAAATTTTTATGGCTTGTAAATTCATACAATGGT
66 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
18146633 CCTTTAAGCGTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCACGATTTTCAA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TATTTTCAA
* * * * * * * *
18146698 AACTTTTTGCGGTTCGGGATTTTTTAAAATCTTTTCGGAAGGGGTTTTGGCTCCAAACCTAGTAG
195 AACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTGGAAAGAGCTTTGGCCCCAAACTTGGTAG
* * * *
18146763 ACATGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAG
259 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
18146828 ATTTTGTGACCATTTGAAAAAACTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
324 ATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
** * * * *
18146893 TGTAAAATCTCAAATGCTCTTTAAATGGGTGTGATTTCTTGAGGTTTCATGAGGTATAGGGGGCC
389 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * **
18146958 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCTTGTGCGCACACCCCCCGACCCCCCCTGA
454 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GGCCCCCTGA
* * * * *
18147023 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCGCCGGCGA
518 TCGTCGGAACCCCAATGTCGCCGGTCA--------AGT-ATGCTCTGGCGATGGT-C-CTGGCGA
* * * * * *
18147088 AGAAAAATACAGG-ACCAGCACATGCTCAAGCCCAGCATGTGCT-ACTGCAACCATCGGTCTGAT
572 AGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCG-T
*
18147151 TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
634 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
* * * * * * * *
18147216 AACCTATGAAATGAGCGTGCGGGCGCCCAACCGGCCAGAGGGGCGGGATGCGAAAGTCGGGGAT-
699 AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATGAGCAAGCCGGGGATC
* * * * * *
18147280 CGACTGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCGGTCCAGTCCGATCTTA
764 CG-CCGGGTCCCCTTCTGCGTGCTGTCGATCCTGCTACTGTAACCCTCGGTCCAGTCCGATCTTA
* *
18147345 GACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAA-A-GAGCGGGC----GGGC
828 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGGGGCGGGCGGGTGGGC
* *
18147399 --G--CTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGATAGGTGGGTT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** *
18147460 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGT
66 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
** * * **
18147525 CCCTTAATTCTTCACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCAATTTTTCATGATTTTTGA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT-ATTTTCAA
* * * * *
18147590 AGCTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAG-TTCTGGCCCTAAACTTGGTA
195 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAA-GAGCTT-TGGCCCCAAACTTGGTA
18147654 GACGTGATCCTTG
258 GACGTGATCCTTG
18147667 AAAGGAGTTC
Statistics
Matches: 4119, Mismatches: 486, Indels: 271
0.84 0.10 0.06
Matches are distributed among these distances:
855 196 0.05
856 202 0.05
857 81 0.02
859 2 0.00
860 3 0.00
861 2 0.00
864 4 0.00
865 1 0.00
866 2 0.00
867 63 0.02
868 3 0.00
870 1 0.00
872 1 0.00
878 3 0.00
880 1 0.00
881 2 0.00
884 2 0.00
887 2 0.00
888 4 0.00
889 12 0.00
890 708 0.17
891 58 0.01
892 222 0.05
893 167 0.04
894 4 0.00
895 1 0.00
896 10 0.00
897 5 0.00
898 17 0.00
899 213 0.05
900 441 0.11
901 234 0.06
902 7 0.00
903 269 0.07
904 942 0.23
905 220 0.05
906 12 0.00
907 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATATTTTCAAA
ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAAGAGCTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCTGATCG
TCGGAACCCCAATGTCGCCGGTCAAGTATGCTCTGGCGATGGTCCTGGCGAAGAAAAATGCGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCG
TGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATGAGCAAGCCGGGGATCCGCCGGGTCCCCTTCTG
CGTGCTGTCGATCCTGCTACTGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAACCGACGAAACAGGGGCGGGCGGGTGGGC
Found at i:18147192 original size:26 final size:26
Alignment explanation
Indices: 18147156--18147208 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18147146 CTGATTCGAT
18147156 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18147182 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18147208 C
1 C
18147209 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18148550 original size:26 final size:26
Alignment explanation
Indices: 18148521--18148573 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18148511 CTAGTCTGAT
*
18148521 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18148547 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18148573 C
1 C
18148574 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18151507 original size:26 final size:26
Alignment explanation
Indices: 18151478--18151530 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18151468 CCGGTCTGAT
* *
18151478 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
18151504 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
18151530 C
1 C
18151531 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:18151967 original size:882 final size:877
Alignment explanation
Indices: 18149955--18152428 Score: 3672
Period size: 882 Copynumber: 2.8 Consensus size: 877
18149945 CCCAATGCCA
* * * *
18149955 GCCAGAGTGATGGGATGCACAAGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
18150020 ATATTTATGA-GTGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATTGTCCCTTAAACCTT
66 ATATTTCT-ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTT
* *
18150084 CACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG
130 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
** *
18150149 TTTAGGATTTTTTTTAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
195 TTTAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
* * *
18150214 TATTTTTCTTGGCTTGCAC-AAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
260 TATTTTTGTTGGCATGCACAAAAAC-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
18150278 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
324 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
18150343 AAATGTTCTTTAAGGGGGTGTGAGTTCTCGGGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
389 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
18150408 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG-CTGAAACC
454 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACC
* ** *
18150472 CTAATGCCGTCAGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGACAAAGAAAAATACG
518 CCAATGCCACCA-TCAGGTTCTCC-GCGATGC-TCGA-GATGGTGCCCCGGCAAAGAAAAATACG
* **
18150537 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCATCCCTCGATCTGGTCCAATCTTAGACT
579 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-TCTGGTCTGATCTTAGACT
* **
18150602 GGGAATGAACTCCGTCGGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
643 GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * **
18150667 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCCCCCTCTGCGTGCTACTGAT
708 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATGCGCAAGTCCCCCTCTACGTGCTACCAAT
* *
18150732 CCTGCTGCCGCAACCCGTGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
773 CCTGCTACCACAACCCGTGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCG-ATGCCTAAGCC
* *
18150797 AATCGACGAAACAAGCGGGCGGGTGGGCGGGCACTACGTCG
837 AACCGACGAAACAAGCGGGCGGGTGGGCGGGCACTACGCCG
* * * *
18150838 ACCAGGGAGACGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
18150903 ATATTTCTGTGTGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAATCCTTC
66 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTC
* * *
18150968 ACGTGAAGTTTCATGGCAAGACAACTCATTTTTTATTTTTCACGATTTTTCAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * * *
18151033 TCAGGATTTTTTAAAATTTTTTCGGGAGGAGTTTTGGCCCTAAACTTGGTAGACATGATCCTTGT
196 TTAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
18151098 ATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
261 ATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
18151163 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAGATCTCAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
**
18151228 ATGCTCTTTAAGGGGGTGTGAGTTCTTTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
18151293 AGTCCCAGCACCCATTGCACATCATGTGCGCACACCCCCTCGGGCCCCCCGATCGTCGGAACCCC
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCC
**
18151358 AATGCCACCGATCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATACGGC
520 AATGCCACC-ATCAGGTTCTCCG-CGATGCT-CGA-GATGGTGCCCCGGCAAAGAAAAATACGGC
** * * * *
18151423 ACCAGCACATGCCCGAGCTTAGCATCTGCTACAGCAACCCTCAGTCCGGTCTGATCTTAGACTGG
581 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCTGGTCTGATCTTAGACTGG
* *
18151488 GAATGAACTCTGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAG
645 GAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
*
18151553 CGTGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATGCGCAAGTCCCCCTCTACGTGCTGCCAATCC
710 CGTGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATGCGCAAGTCCCCCTCTACGTGCTACCAATCC
* * * *
18151618 TGCTACCACAACCCTTGTTCTGGTCCGATCTTAGACTA-GAATGAGCTCTC-ATGCCTAAGCCAA
775 TGCTACCACAACCCGTGGTCCGGTCCGATCTTAGACTAGGAATGAACTC-CGATGCCTAAGCCAA
**
18151681 CCGACGAAATGAGCGGGCGGGTGGGCGGGCACTACGCCG
839 CCGACGAAACAAGCGGGCGGGTGGGCGGGCACTACGCCG
* *
18151720 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCCTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
18151785 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTC
*
18151850 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * * * * *
18151915 TTGGGATTTTTTAAAATTTTTTTGGAAGGCTTTTTGGCCCCAAACCTGGTAGACGTGATCCTCGT
196 TTAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
* * *
18151980 ATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCAT
261 ATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
18152045 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * * *
18152110 ATGCTTTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATAAAGGATAGGGGGCTAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
18152175 AGTACCACCACCCATCGCACATCATGTGCG--CACCCCCCGGCCCCCCCGATCGTCAGAACCTCG
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCA
* * *
18152238 ATGCCACCAATCAGGTTCT-C-CGA----C--GATGG-GCCCCAGCAAAGAAAAATGCGACACCA
521 ATGCCACC-ATCAGGTTCTCCGCGATGCTCGAGATGGTGCCCCGGCAAAGAAAAATACGGCACCA
* * * *
18152294 ACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCTGATCATAGACTGCGAAT
585 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTCTGGTCTGATCTTAGACTGGGAAT
* * *
18152359 GAACT-TCGTATGCTTAGACTGGGAATGAACTCCGTAT-ACTAAGCCAACCGACGAAACGAGCAG
649 GAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-G
18152422 -GCGGGCG
712 TGCGGGCG
18152429 GGCGGACGGT
Statistics
Matches: 1441, Mismatches: 139, Indels: 39
0.89 0.09 0.02
Matches are distributed among these distances:
866 29 0.02
867 111 0.08
868 5 0.00
871 1 0.00
876 3 0.00
878 1 0.00
879 40 0.03
880 7 0.00
882 494 0.34
883 461 0.32
884 286 0.20
885 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (877 bp):
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTC
ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
TTAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
ATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCA
ATGCCACCATCAGGTTCTCCGCGATGCTCGAGATGGTGCCCCGGCAAAGAAAAATACGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTCTGGTCTGATCTTAGACTGGGAATGA
ACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GGCGCTCAGCCGGCCAGAGGGGAGGGATGCGCAAGTCCCCCTCTACGTGCTACCAATCCTGCTAC
CACAACCCGTGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGATGCCTAAGCCAACCGACGA
AACAAGCGGGCGGGTGGGCGGGCACTACGCCG
Found at i:18154684 original size:26 final size:26
Alignment explanation
Indices: 18154648--18154700 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18154638 CTGGTCTGAT
*
18154648 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18154674 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18154700 C
1 C
18154701 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18155898 original size:898 final size:896
Alignment explanation
Indices: 18153926--18156473 Score: 3504
Period size: 898 Copynumber: 2.8 Consensus size: 896
18153916 ACTTCGTATG
18153926 CTTAGACTG-GGAATGAACTCCGTATA--CTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCG
1 CTTAGACTGTGGAATGAACTCCGTA-AGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGC-
* * *
18153988 GACGGTCGACGCAACGTC-GGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
64 GA--G-C-A--CTACG-CAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
18154052 GTGCGTTTAGGCACATCTTCATATTTCTGCATGGCAATGCCATTTTTATGGCTTGTAAATTCATA
122 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT-AATTCATA
* **
18154117 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACAA
186 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * *
18154182 TTTTCAAAACTTTTTGCGGCTCGGGATTTTTTGAAATTTTTTACGGAAGGAGTTTTGGCCCCAAG
251 TTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTA-GGAAGGAGTTTTGGCCCCAAA
** *
18154247 CTTGGTAGACATGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAA
315 CTTGGTAGATGTGATCCTTGTA--TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * *
18154312 GTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATTGCTACTGC
378 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18154377 CAACAAACCTGTAAAATCTCAAATGCTC-TTGAAGGAGGTGTGAGATCTTGAGGTTTGATGAGGG
443 CAGCAAACCTGTAAAATCTCAAATGCTCTTTGAAGG-GGTGTGAGTTCTTGAGGTTTGATGAGGG
* * * *
18154441 ATAGGGGGCCAATATAAAGGCCAAGTACGAGCACCCATCGCACATCATGTGTGCACACCCCCTCG
507 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CC
* ** * ** * * *
18154506 GACCCCCCGATCGTCGGAACCCCAATGCCGTCGTTCAGGTTC-CC-TGGAATGCTTCGGCAATGG
571 GACCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCAACG-ATGCTCCGACGATGG
* * * * *
18154569 TGCCCCGGCGAAGAGAAATGCGGCACCAGCGCATGCCCGAGCCTAGCATGTGGTACCGCAACCCT
635 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
* * * * *
18154634 CGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
700 CGGTCAGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATAAACTCCGTAT
* * *
18154699 GCCTAAGTCAACCCACGAAACGAGCGTGAGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
765 GCCTAAGTCAACCCACGAAACGAGCGTGACGACACTCAGCCGGCCAGAGGGGCGGGATGCGAAAG
18154764 CTGGGGATCGCAAGGTCCCCTCTACGTGCTCTCAATCCTGCTGTCGCAACCCTCATTCCGGTCCG
830 CTGGGGATCGCAAGGTCCCCTCTACGTGCTCTCAATCCTGCTGTCGCAACCCTCATTCCGGTCCG
18154829 AT
895 AT
* *
18154831 CTTAGA-T-TAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCG
1 CTTAGACTGT-GGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACGAGCAGGCGGGC--G-G
* *
18154894 GTCGGGCACTACGCAGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGG
62 G-CGAGCACTACGCAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
18154959 GTTTAGGCACATCTTCATATTTCTGCATGCCAATG-CATTTTTGTGGGC-TGTAATTCATACAAT
126 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT-GGCTTGTAATTCATACAAT
* * *
18155022 GGTCCCTTAAGTCTTCACGTGAAATTTCATGGCAGGACGACTCGTTTTCTATTTTTCATGATTTT
190 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * *
18155087 CAAAACTATTTGCTGTTCGGGATTTTTTAAAATATTTTT-GAAAGGAGTTTTGGCCCCAAACTTG
255 CAAAACTTTTTGCGGTTCGGGATTTTTTAAAAT-TTTTTAGGAAGGAGTTTTGGCCCCAAACTTG
* *
18155151 GTAGATGTGATCCTCGTATTTTTGTTGGCATGCA-AAAGAAATTCAGCTAAAAACTCGAAGTGTA
319 GTAGATGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * *
18155215 CAAGATTTTGTGACCAATTGAGAAAAGTGTCCCCATTTGAGACACTTTAGTGGCTACTGGCAGCA
383 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
18155280 AACCTCTAAAATCTCAAATGCTCTTTGAAGGGGTGTGAGTTCTCGAGGTTTGCT-AGGGGATAGG
448 AACCTGTAAAATCTCAAATGCTCTTTGAAGGGGTGTGAGTTCTTGAGGTTTGATGA-GGGATAGG
**
18155344 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGCACACCCCCCCGACCCC
512 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCC
* * *
18155409 CCAATCACCGGAACCCCAATGCCACCGGTCAAGTTCTCCAACGATGCTCCGACGATGGTGCCCCG
577 CCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCG
* * * * *
18155474 ATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCACAACCCTCGGTCCG
642 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCAG
* * *
18155539 GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATAAACTCTGTTTGCCTAAG
707 GTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATAAACTCCGTATGCCTAAG
* * * *
18155604 TCAACCCATGAAACGAGCGTGCCGACGCTTAGCCGGCCAGAGGGGCGGGATGCGAAAG-TCGGGG
772 TCAACCCACGAAACGAGCGTGACGACACTCAGCCGGCCAGAGGGGCGGGATGCGAAAGCT-GGGG
* * **
18155668 ATCG-ACTGCGTCCCC-CTATGCGTGCTAC-CAATCCTGCTG-CTGCAACCTTTCA-TCCGGTTT
836 ATCGCA-AG-GTCCCCTCTA--CGTGCT-CTCAATCCTGCTGTC-GCAACC-CTCATTCCGGTCC
18155728 GAT
894 GAT
*
18155731 CTTAGACTGTGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACTAGCAGGCGGGCGGGCGA
1 CTTAGACTGTGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGA
* ** *
18155796 GCACTATGCAGAATAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
18155861 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTATATTCATACAATGGTCC
131 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA-ATTCATACAATGGTCC
* **
18155926 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCATGATTTTTTAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* * * * *
18155991 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTAGGAAGGATTTTTGGTCCCAAACTTGGTGGGT
260 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACTTGGTAGAT
*
18156056 GTGATCCTTGTATTTTTTTCGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
18156121 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTGTAATGGCTACTCGCAGCAATCCTG
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
18156186 TAAAATCTCAAATGCTCTTT-ACGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
454 TAAAATCTCAAATGCTCTTTGA-AGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
* * * * * * *
18156250 ATATAAGGGCCAAGTACTAGAACCAATCGCACATCATGTGGGCACAACCCCCTGGCACCCCCGAT
518 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC-CCCCCGAT
* **
18156315 CGCCGGAACCCCAGTG-CAGCCGGTCAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGACGA
582 CGCCGGAACCCCAATGCCA-CCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCGACGA
* * * *
18156379 AGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCAGGTCT
646 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCAGGTCT
18156444 GATCTTAGACTGGGAATGAACT-TCGTATGC
711 GATCTTAGACTGGGAATGAACTCT-GTATGC
18156474 CTAAGTCAAC
Statistics
Matches: 1457, Mismatches: 149, Indels: 78
0.87 0.09 0.05
Matches are distributed among these distances:
897 134 0.09
898 410 0.28
899 177 0.12
900 273 0.19
901 298 0.20
902 18 0.01
903 87 0.06
904 1 0.00
905 22 0.02
906 31 0.02
907 1 0.00
908 1 0.00
909 3 0.00
910 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTTAGACTGTGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGA
GCACTACGCAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACTTGGTAGATG
TGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTGAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGCC
GGAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCAGGTCTGATCT
TAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGACGACACTCAGCCGGCCAGAGGGGCGGGATGCGAAAGCTGGGGATCGCAAGGT
CCCCTCTACGTGCTCTCAATCCTGCTGTCGCAACCCTCATTCCGGTCCGAT
Found at i:18156764 original size:163 final size:160
Alignment explanation
Indices: 18156418--18156830 Score: 445
Period size: 163 Copynumber: 2.6 Consensus size: 160
18156408 GCCCAGCATG
* * * *
18156418 TGCTGCCGCAACCCTCGATCAGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
1 TGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
18156483 CCCACGAAACAAGCGTGCGG-GCGCTCAGCCGGTCAGAGGGGCGGGATGCGCAAGCCGAGGATCT
66 CCGACGAAACGAGCGGGCGGCGGGCACAGCCGGCCAGAGAGACAGGATGCGCAAGCCGAGGATCT
* * **
18156547 GTCGGGTCCCCCTATGTGTGCTGTTAATCC
131 GCCGGGCCCCCCTATGTGTGCTGCCAATCC
* * *
18156577 TGCTACCGTAACCCTC-AGTCTGGTCTGATTTTAGACTGGGAATGAAATCCGTATGCCTAAGCCA
1 TGCTACCGCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18156641 ACTGACGAAATGAGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACATGATGCGCAAGCCGGGG
65 ACCGACGAAACGAGCGGGCGG-CGGGCAC-A-GCCGGCCAGAGAGACAGGATGCGCAAGCCGAGG
* *
18156706 ATC-GACCGGGCCCCCCTCTGTGTGCTGCCGATCC
127 ATCTG-CCGGGCCCCCCTATGTGTGCTGCCAATCC
*** ** * *
18156740 TGCTGTTGCAACCCTCGATCTGGTCCAATCTTAGACTAGGAATGAACTCCGTAAGCCTAAGCCAA
1 TGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
18156805 CCGACGAAACGAGCAGGCGGGCGGGC
66 CCGACGAAACGAGCGGGC-GGCGGGC
18156831 GGGCAGGCAC
Statistics
Matches: 207, Mismatches: 39, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
158 1 0.00
159 71 0.34
161 4 0.02
162 2 0.01
163 126 0.61
164 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.19
Consensus pattern (160 bp):
TGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGCGGGCACAGCCGGCCAGAGAGACAGGATGCGCAAGCCGAGGATCT
GCCGGGCCCCCCTATGTGTGCTGCCAATCC
Found at i:18158227 original size:26 final size:26
Alignment explanation
Indices: 18158198--18158253 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
18158188 CCGATCCGAT
18158198 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18158224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18158250 CTTA
1 CTTA
18158254 AGTTAACACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18159602 original size:675 final size:677
Alignment explanation
Indices: 18158724--18160333 Score: 2912
Period size: 675 Copynumber: 2.4 Consensus size: 677
18158714 TCCTTGTATT
* * *
18158724 TTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGA
1 TTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
18158789 CACTTTAATTGCTATTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
66 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
18158854 TCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGGGCCAAGTACCACCACCCAATGCACATCAT
131 TCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGGGCCAAGTACCACCACCCAATGCACATCAT
* *
18158919 GTGCGCAGACCACCCCCGGGCCTCTGATCACTGGAACCCCAATGCCGTCGATCAGGTTCTTCGAT
196 GTGCGCAGACCACCCCCGGGCCCCTGATCACTGGAACCCCAATGCCGTCGATCAGGTTCTTCGAC
18158984 CGGGTCCCTCTCGATGTGCTTCCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACT
261 CGGGTCCCTCTCGATGTGCTTCCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACT
18159049 GGGAATGAACTCTATATGCCTAAGCCAACCGACGAAATGAGCA-AGCGGGCGGGCGGGCACTACT
326 GGGAATGAACTCTATATGCCTAAGCCAACCGACGAAATGAG-AGAGCGGGCGGGCGGGCACTACT
18159113 CCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATTGATAGGGTGGT-GGTGGGTTTAGGCACATC
390 CCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATC
18159177 TTCCTATTTCTACGTGCCAGTCCCATTTTTATGGCCTGTAAATTCATACAATGGTCCTTTAAGCC
455 TTCCTATTTCTACGTGCCAGTCCCATTTTTATGGCCTGTAAATTCATACAATGGTCCTTTAAGCC
18159242 TTCCCGTGACGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGT
520 TTCCCGTGACGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGT
18159307 GGTTCGGGATTTTTT-AAATTTTTTCGAAAGGATTTTTCACCCCAAACTTGGTAGACATGATCCT
585 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTCACCCCAAACTTGGTAGACATGATCCT
18159371 TGTATTTTTGTTGGCATGCATAAAAAAA
650 TGTATTTTTGTTGGCATGCATAAAAAAA
18159399 TTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
1 TTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
18159464 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
66 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
18159529 TCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGGGCCAAGTACCACCACCCAATGCACATCAT
131 TCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGGGCCAAGTACCACCACCCAATGCACATCAT
*
18159594 GCGCGCAGACCACCCCCGGGCCCCTGATCACTGGAACCCCAATGCCGTCGATCAGGTTCTTCGAC
196 GTGCGCAGACCACCCCCGGGCCCCTGATCACTGGAACCCCAATGCCGTCGATCAGGTTCTTCGAC
18159659 CGGGTCCCTCTCGATGTGCTTCCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACT
261 CGGGTCCCTCTCGATGTGCTTCCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACT
*
18159724 GGGAATGAACTCTATATGCCTAAGCCAACCGATGAAATGAGAGAGCGGGCGGGCGGGCACTACTC
326 GGGAATGAACTCTATATGCCTAAGCCAACCGACGAAATGAGAGAGCGGGCGGGCGGGCACTACTC
18159789 CGGCCAGAGAGACGGGATGCGTAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCT
391 CGGCCAGAGAGACGGGATGCGTAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCT
18159854 TCCTATTTCTACGTGCCAGTCCCATTTTTATGGCCTGTAAATTCATACAATGGTCCTTTAAGCCT
456 TCCTATTTCTACGTGCCAGTCCCATTTTTATGGCCTGTAAATTCATACAATGGTCCTTTAAGCCT
18159919 TCCCGTGACGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTG
521 TCCCGTGACGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTG
*
18159984 GTTTGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTCACCCCAAACTTGGTAGACATGATCCTT
586 GTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTCACCCCAAACTTGGTAGACATGATCCTT
*
18160049 GTATTTTTTTTGGCATGCATAAAAAAA
651 GTATTTTTGTTGGCATGCATAAAAAAA
18160076 TTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
1 TTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18160141 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
66 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
18160206 TTGAGGTTTGATGAGGGATAGGGTGCCAATATAA-GGCCAAGTACCAGCACCC-ATCGCACATCA
131 TCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGGGCCAAGTACCACCACCCAAT-GCACATCA
* * * * * * *
18160269 TGTGCGCACACC-CCCCC-GCCCCCTCGATC-GTCGGAACCCCAATGTCGTCGGTCAAGTTCTCC
195 TGTGCGCAGACCACCCCCGGGCCCCT-GATCACT-GGAACCCCAATGCCGTCGATCAGGTTCTTC
18160331 GAC
258 GAC
18160334 GATGCTCTGA
Statistics
Matches: 904, Mismatches: 25, Indels: 12
0.96 0.03 0.01
Matches are distributed among these distances:
674 8 0.01
675 463 0.51
676 197 0.22
677 236 0.26
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (677 bp):
TTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGGGCCAAGTACCACCACCCAATGCACATCAT
GTGCGCAGACCACCCCCGGGCCCCTGATCACTGGAACCCCAATGCCGTCGATCAGGTTCTTCGAC
CGGGTCCCTCTCGATGTGCTTCCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACT
GGGAATGAACTCTATATGCCTAAGCCAACCGACGAAATGAGAGAGCGGGCGGGCGGGCACTACTC
CGGCCAGAGAGACGGGATGCGTAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCCTATTTCTACGTGCCAGTCCCATTTTTATGGCCTGTAAATTCATACAATGGTCCTTTAAGCCT
TCCCGTGACGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTG
GTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTCACCCCAAACTTGGTAGACATGATCCTT
GTATTTTTGTTGGCATGCATAAAAAAA
Found at i:18160458 original size:26 final size:26
Alignment explanation
Indices: 18160429--18160481 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18160419 CCAGTCCGAT
*
18160429 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCGTATG
18160455 CTTACATTGGGAATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCGTATG
18160481 C
1 C
18160482 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACATTGGGAATGAACTCCGTATG
Found at i:18161369 original size:26 final size:26
Alignment explanation
Indices: 18161331--18161383 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18161321 CCAGTCCAAT
* * *
18161331 CTTAGACTTGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18161357 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18161383 C
1 C
18161384 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18162277 original size:26 final size:26
Alignment explanation
Indices: 18162241--18162293 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18162231 CCAGTCCGAT
*
18162241 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
18162267 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
18162293 C
1 C
18162294 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:18162455 original size:909 final size:899
Alignment explanation
Indices: 18159681--18162765 Score: 4445
Period size: 901 Copynumber: 3.4 Consensus size: 899
18159671 GATGTGCTTC
* * * **
18159681 CGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTA
1 CGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
* * *
18159746 AGCCAACCGATGAAATGA-GA--GAGCGGGCGGGCGGGCACTACTCCGGCCAGAGAGACGGGATG
66 AGCCAACCGACGAAACGACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * * *
18159808 CGTAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTACGTGCCAG
131 CATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
* * * *
18159873 TCCCATTTTTATGGCCTGTAAATTCATACAATGGTCCTTTAAGCCTTCCCGTGACGTTTCATGGC
196 TGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
18159938 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTTGGGATTTTTTAAAAT
261 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
* *
18160003 TTTTTCGAAAGGATTTTTCACCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCA
326 TTTTTCGAAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
* *
18160068 TAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
391 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
18160133 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGT
456 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
18160198 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGTGCCAATATAA-GGCCAAGTACCAGCACCCATCG
521 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
18160262 CACATCATGTGCGCACACCCCCCCGCCCCCTCGATCGTCGGAACCCCAATG-TCGTCGGTCAAGT
586 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCTC--CGGTCAGGT
* * *
18160326 TCTCCGACGATGCTCTGACGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCTCGAG
649 TCTCCGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC-CGAG
* * * * * *
18160391 CCCAGCATGTGCTATCGGAAACCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGC
713 CCTAGCATGTGCTATCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
* ** * *
18160456 TTACATTGGGAATGAACTCCGTATGCCTAAGTCAAAACACGAAACGAGCGTACGGGTGCTCAGCC
778 TTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
18160521 -GACAGAGTGGCGCGATGCGCAAGCCGGGGATTGGCCGGGTCCCACTCTGCGTGCTGT
843 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC-CTCTGCGTGCTGT
* *
18160578 CGATCCTGCTGCCACAACCCTCGGTTCAGT-TCGATCTTAGACTAGGAATGAACTCCGTATGCCT
1 CGATCCTGCTGCCACAACCCTCGGTCCGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCCT
* * *
18160642 AAGCCAACCGACGAAACGAGCGGGCGAGAGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGA
65 AAGCCAACCGACGAAACGA-CGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * *
18160707 TACAGAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCC
129 TGCATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCC
*
18160772 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
194 AATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
** * ** * *
18160837 GCAAGACGACTAATTTTCTATTTTTCACGTTTTTTGAAATTTTTTACGGTTCGGGATTTTTTAAA
259 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTT-AA
* *
18160902 AATTTTTTCGAAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTCTTGTTGGCAT
323 AATTTTTTCGAAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
*
18160967 GCACAAAATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
388 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
18161032 CCCATTTCAG-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
453 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
18161096 GGTGTGAATTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCA
518 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
18161161 -CTGCACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTC
583 TC-GCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG-CTCCGGTC
* * *
18161225 AGGTTCTCCGACGATGCTCTG-GGATGGTGCCCCGACGAAGAAAAATGCGGCAGCAGCAGATGCC
645 AGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * *
18161289 TGAGCCTAGCATGTGCTGTCGCAACCCTCGACCCAGTCCAATCTTAGACTTGGAATGAACT-TCG
710 -GAGCCTAGCATGTGCTATCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCT-G
*
18161353 TATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCT
773 TATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * **
18161418 CAGTCGGCCAGAAGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTAC
838 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTGCGTGCTGT
** * ** * * * *
18161481 CGATATTGCTACCGTAACTCTCGGTCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTA
1 CGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
* *
18161546 AGCCAACCGACGAAACGAGCGAACAAGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACG
66 AGCCAACCGACGAAACGA-CG----AGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * *
18161611 GGATGCATAAGCCGTGGATGGATAGGGTTGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCAT
126 GGATGCATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
* * *
18161676 GCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
191 GCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* ** ** * **
18161741 ATGGCAAGACGACTCGTTTTCTATTTTTGACGATTTTTGAAACTTTTTGTTGTTAGAAATTTTTT
256 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTT
* * ** *
18161806 AAAATTTTTTCGGAGGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCATATATTTTTTTTG
321 AAAATTTTTTCGAAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCT--TGTATTTTTTTTG
*
18161871 TCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
384 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
18161936 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
449 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
18162001 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
514 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
18162066 CCCATCGCACATCATGTGCGCACAACCCCCGGCCCCCCCCGATCGCCGAAACCTCAATGCTACCG
579 CCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCCGATCGCCGGAACCCCAATGCT-CCG
* * * * * *
18162131 GTCAGGTTATCTGACGACGCTCAGACGACGGTGCACCGACGAAGAAAAATGCGGCACCAGCACAT
642 GTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
*
18162196 GTCCAAGCCTAGCATGTGCTA-CTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACT
707 G-CCGAGCCTAGCATGTGCTATC-GCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACT
* *
18162260 CTGTATGCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
770 CTGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * *
18162325 GCTCAGCCGGCCAGAGGGGTGGGATGCGCATGCTGGGGATCGGTCGGGTCCCCTCTGCGTGCTGT
835 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTCTGCGTGCTGT
* * *
18162390 CGATCCTGCTGCCACAATCCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTGTGCCTA
1 CGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
* * * *
18162455 AGCCAACCGACG-AA--ACGAGCGGGCAGGCGGGCGGGCACAACGCCGGCCAGAGAGATGGGATG
66 AGCCAACCGACGAAACGACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * ** *
18162517 CACAAGTCGTGGATCGATAGGGTGGTAGGTGGAATTAGGCACATCTTCATATTTCTACGTGCCAA
131 CATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
* * *
18162582 TGCCATTTTTATGGCCTATAAACTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
196 TGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
*
18162647 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAAT
261 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
* * ** * *
18162712 TTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTAATCCTGGTATTTTT
326 TTTTTCGAAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
18162766 ATGGCTACTG
Statistics
Matches: 1949, Mismatches: 209, Indels: 58
0.88 0.09 0.03
Matches are distributed among these distances:
896 1 0.00
897 72 0.04
899 8 0.00
901 559 0.29
902 322 0.17
903 171 0.09
904 4 0.00
905 3 0.00
906 47 0.02
907 210 0.11
908 97 0.05
909 259 0.13
910 193 0.10
911 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
AGCCAACCGACGAAACGACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
CATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
TGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
TTTTTCGAAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCTCCGGTCAGGTTC
TCCGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCGAGCCT
AGCATGTGCTATCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTA
CACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTCTGCGTGCTGT
Found at i:18163625 original size:26 final size:26
Alignment explanation
Indices: 18163588--18163640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18163578 CCAGTCTCAT
*
18163588 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCAGTATG
*
18163614 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACAGGGAATGAACTCAGTATG
18163640 C
1 C
18163641 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCAGTATG
Found at i:18164432 original size:26 final size:26
Alignment explanation
Indices: 18164394--18164446 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18164384 CCAGTCTCAT
*
18164394 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18164420 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18164446 C
1 C
18164447 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18164971 original size:26 final size:26
Alignment explanation
Indices: 18164935--18164987 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18164925 CCAGTCTCAT
* *
18164935 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
18164961 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
18164987 C
1 C
18164988 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:18165885 original size:26 final size:26
Alignment explanation
Indices: 18165834--18165886 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18165824 CTGGTCCGAT
* *
18165834 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18165860 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18165886 C
1 C
18165887 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18167557 original size:26 final size:26
Alignment explanation
Indices: 18167521--18167576 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
18167511 TCGGTCTGAT
*
18167521 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18167547 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18167573 CTTA
1 CTTA
18167577 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18168449 original size:26 final size:26
Alignment explanation
Indices: 18168420--18168472 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18168410 CCAGTCCGAT
18168420 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18168446 CTTAGCCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18168472 C
1 C
18168473 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18173526 original size:871 final size:872
Alignment explanation
Indices: 18168564--18177731 Score: 10337
Period size: 872 Copynumber: 10.4 Consensus size: 872
18168554 GCCCTCTGTG
* *
18168564 TGTGA-CATTTGAAAAAATTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * **
18168628 AAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTTC-AGGTTTGATTAGGGATAGGGGGTAAAT
66 AAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
18168692 ATAAGGGCCAAGTACCAGCACCCATCGTACATCTTGTGCGCACACCCCCTAGCCCCCCCAATCGT
129 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCGATCGT
* * * * * * *
18168757 CGGAACCTCC-ATGTCGTCGGTCAGGTTCTCCGATGATGATCCAACGATGGTGGCTCGATGAAGA
193 CGGAACC-CCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGA
* ** * *** ** * *
18168821 AAAATACGTTACCAGCACATGCCCGAGCCCAGCATGTGCTGCGGTAACCCTCGGTCCGATCCGAT
257 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCACTCTGGTCCGAT
* ** * * *
18168886 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCATAAAACGAGTGTGCGGGCGCACAGC
322 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAGC
* * * * * * * * *
18168951 CGGCCAGAGGGGC-GGGATACGTAAGCCGGGGATCCGTCGAGTCCCCCTCTGCGTGTTGTAGATC
387 CGGCTAGAGGGGCAGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTCTACGTGCTGTCGATC
* * * *
18169015 CTAT-TGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
452 CT-TCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18169079 AACCAACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGT
516 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
18169144 CGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCCGCATGCCAATGCCATT
581 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * * *
18169209 TTTATGGCTTCTAAATTCATACAATGGTCCCTTATGACC-TCACGTGAAGTTTCATGGGAAGGTG
646 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CCTTCACGTGAAGTTTCATGGCAAGATG
* ** *
18169273 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAAATTTTTT-AAATTTTTTC
710 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTT
* * *
18169337 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAA
775 GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
18169402 ATTTCAGCTAAAAACTCGAAGTGTACAAGTTTT
840 AATTCAGCTAAAAACTCGAAGTGTACAAGATTT
18169435 TGTGACCATTTGAAAAAAAG-GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
1 TGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
18169499 AAAATCTGAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGAGCGAAT
65 AAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
18169563 ATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCGCACGCCCCCCCGACCCCCCCGATTG
129 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCG-GCCCCCCGATCG
** * * * * * **
18169628 -CTAAAACCCTAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCTGACGATGGTACCCCGGTGAAG
192 TC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * * **
18169692 AAAAATGCGACACCAGCACATTCCC-AGGCCCAACATGTGCTGCCGCAACCCTCGA-TCTAATCC
256 AAAAATGCGGCACCAGCACATGCCCGA-GCCCAGCATGTGCTACCACAACCCTC-ACTCTGGTCC
* * * *
18169755 AATCTTAGACTAGGAATGAACTCCGTATGCCTAGGTCAACCCACG-----A-CGTGCGGGCGTTC
319 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTC
* ** * **
18169814 AGCCAGCTAGA-GGG-ATGGGATGCGCAAGCCGATGATCGGTTGGGTTCCCC-TCTACGTGCTAC
384 AGCCGGCTAGAGGGGCA-GGGATGCGCAAGCCGGGGATCGGTCGGG-TCCCCTTCTACGTGCTGT
* * * ** ** *
18169876 CGATCCTACTGCCGCAACCCTTGGTCTGGCCTGATCTTAGACAAGGAATGAACTCCGTATGCCTG
447 CGATCCTTCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
18169941 AGCCAACAGACGAAACGAGCGGGCAGGCGGGCGGGCGGAC-ACTTAACCGGCCAAAGAGACGGGA
512 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC--ACTACGT---CGGCCAGAGAGACGGGA
* * * *
18170005 TGCGCAAGCCGTGGATCGATAAGGTGGCAGGTGGGTTTAGGCACATCTTCATATTCCTGTGTGCC
572 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
18170070 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACC-TCACGTGAAGTTTCAT
637 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CCTTCACGTGAAGTTTCAT
* * * ** * *
18170134 GGGAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGCTTGAGATTTTTT-A
701 GGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAA
* * * *
18170198 AATTTTTTTGAAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGT
766 AATTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
18170263 GCACAAAAAAATTCAGCTAAAAACTC-AGAGTGTACAAGTTTT
831 GCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTT
*
18170305 TGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTT-A-----A-T---AG-----C--TA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
18170353 AAATCTCAAATGCTCTTTAAGGGTGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATA
66 AAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * * *
18170418 TAATGGCCAAGTACCAGCACCCAACGCGCATCATGTGCACAAACCCCTCGGCCCCTCCGATCGT-
130 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTC
**
18170482 GGAAACCCCAATGCCGCCGGTCAGGTTCTCC------G----G-CGATGGTGCCCCGGTGAAGAA
194 GG-AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * * ** **
18170536 AAATGTGGCACCAGCACATGGCCGAGCCCAACATGTGCGGCCGCAGCCCTCGGTCCAGTCCGATC
258 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC-TAC-CA--CAAC---CC--T-C-A-C
* * *
18170601 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCTTATTCCTAAGTCAACCCA
311 -T---CT--G---G---TCC-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * ** * * * **
18170666 CGAAACAAGCGTGAGAGCGCTCAGCCAACCAGAGGGG-TGGGATGCGCAAGCCGGAGATCGACCG
362 CGAAACTAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCAGGGATGCGCAAGCCGGGGATCGGTCG
* ** ** * * * * * * * *
18170730 AGTCCCCCACTGTGTGCTGCCGATCCTGCTACCACAACCCTTGGTCCGGTCTGATCTTACACT-A
427 GGTCCCCTTCTACGTGCTGTCGATCCTTCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGG
* * * * * * *
18170794 GATTGAACTTCGTATGCCTAAGCCAACTGATGAAATGAGCGGGAGGGCAGACGGGCAGGCACTAC
492 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-CGG--G-CGGGCGGGCACTAC
* *
18170859 GTCGGCCAGAGAGACGGGATGCGCAAGCCATAGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
553 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
18170924 CTTCATATTTCTACGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGC
618 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
18170989 CTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
683 CTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* * * *
18171054 CAGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAA-ATGGTGGACATGATCC
748 CGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCC
* * * * *
18171118 CTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATTT
813 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
18171178 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
18171243 AAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
66 AAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
18171308 ACGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCGATTGTCGG
131 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGG
* * * * * *
18171373 AACCCCAACGCTGTCGATCAGGTTCTCCGATGATGCTCCGACGACGGTGCCCCGACAAAGAAAAA
196 AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * * *
18171438 TGCGGCACCAGCACATGCCCAAGCCCAGCATATGCTACCACAACCCTCGCTCCGGTCCGATCTTA
261 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCACTCTGGTCCGATCTTA
* * *
18171503 GACTGGGAATGAACTCC-TATGCCTAAGTCAACCGATGAAACTAGCGTGCGGGCGCTCAGTCGGC
326 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAGCCGGC
* * ** *
18171567 TAGAGGGGCA-GGATGCACAAGCCGGGGATCGGTCAGGTCCTTTTTTACGTGCTGTCGAT-CTTG
391 TAGAGGGGCAGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTCTACGTGCTGTCGATCCTT-
* *
18171630 CTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATCAACTTCGTATGCCTAAGCCAACC
455 CTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18171695 GAAGAAACGAGCGGGCGGGTGGGCGGGCACTACGTCGGCTAGAGAGACCGGATGCGCAAGCCGTG
520 GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
18171760 GATCGATAGGGTGGT-GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
585 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* *
18171824 TGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTG
650 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
* *
18171889 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTTGGGATTTTTTAAATTTTTTTTGGAAG
715 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAG
* * * * *
18171954 AAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTT
780 GAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
18172019 AGCTAAAAACTCGAAGTGTACAAGATTT
845 AGCTAAAAACTCGAAGTGTACAAGATTT
* *
18172047 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAACAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
18172112 AAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
66 AAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
18172177 ACGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCGAAT-GTCG
131 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG-ATCGTCG
* * * * * * *
18172241 GAACCCCAACGCTGCCGGTCAGGTTCTTCGGTGATGCTCCGGCGACGGTGCCCCGACAAAGAAAA
195 GAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * * *
18172306 TTGCGGCACCAGCACATGCCCAAGCCCAGCATATGCTACCACAACCCTCACTCCGGTTCGATCTT
260 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCACTCTGGTCCGATCTT
* ** *
18172371 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACTAGCGTGCGGGCTTTCAGTCGG
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAGCCGG
* ** *
18172436 CTAGAGGGGCA-GGATGCACAAGCCGGGGATCGGTCGGGTCCTTTTTTACGTGCTGTCGAT-CTT
390 CTAGAGGGGCAGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTCTACGTGCTGTCGATCCTT
* *
18172499 GCTACCACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAAC
455 -CTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
18172564 CGAAGAAACGAGGGGGCGGGCTGGCGGGTACTACGTCGGCTAGAGAGATC-GGATGCGCAAGCCG
519 CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGA-CGGGATGCGCAAGCCG
* *
18172628 TGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
583 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
18172693 TATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGATGACT
648 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
* *
18172758 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTTGGGATTTTTTAAATTTTTTTTGGA
713 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGA
* * *
18172823 AGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTTGGCATGCATAAAAAAA
778 AGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAA
*
18172888 TTTAGCTAAAAACTCGAAGTGTACAAGATTT
842 TTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
18172919 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
18172984 AAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGGGGGCCAATAT
66 AAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
18173049 ACA-GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG
131 A-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG
* * *
18173113 GAACCCCAACGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGACGGTGCCCCGACAAAGAAAA
195 GAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * *
18173178 ATGCAGCACCAGCACATGCCCAAGCCCAGCATATGCTACCACAACCCTCACTCTGGTCCAATCTT
260 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCACTCTGGTCCGATCTT
* * *
18173243 AGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACTAGCATGCGGGCGCTCAGTCGG
325 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAGCCGG
* * * ** *
18173308 CTAGAGGGGCAGGG-TGCACAATCCGGGGATCAGTCGGGTCCTTTTTTACGTGCTGTCGAT-CTT
390 CTAGAGGGGCAGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTCTACGTGCTGTCGATCCTT
* *
18173371 CTACCGCAACACTCGGTCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACC
455 CTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * ** *
18173436 GACGAAACGAACGGGTGGGCGGGTGGGTACTACGTCGGTTAGAGAGACCGGATGCGCAAGCCGTG
520 GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * * *
18173501 TATCGATAGGGTGGTCGATGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCCTTTTTA
585 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* * *
18173566 TGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTGATGGAAAGATGACTCG
650 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
* * *
18173631 TTTTTTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTTGGAAG
715 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAG
* * * * * * *
18173696 GAGTTTTGGCCCTAAGCCTGGTAGACATGATCCTTATATTTTTGTTGGCATGTACAAAAAAATTC
780 GAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
18173761 AGCTAAAAACTCCAAGTGTACAAGATTT
845 AGCTAAAAACTCGAAGTGTACAAGATTT
* * * *
18173789 TGTGACCATTCGAAAAAAGTGTACCAATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
18173854 AAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
66 AAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * **
18173919 TAAGGACCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCAC
130 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG-GCCCCCCGATCGT
*
18173984 CGGAACCCCAATGCCGTCGGTCAGGTTCTCC---GA---T-----GATGGTGCCCCGACGAAGAA
193 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * *
18174038 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAATCCTCGGTCCGGTCCGATC
258 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAA----C---CC--T-C-A-C
18174103 TTAGACTAGGAATGAACCCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
311 -T---CT-GG--T----CC-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * **
18174168 CGAAACGAGCGTGCGGGTGCTCAGCCGTCCAGAGGGGCA-GGATGCACAAGCCGGGGATTGACCG
362 CGAAACTAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCAGGGATGCGCAAGCCGGGGATCGGTCG
* * * *
18174232 GGTCCCCCTCTACGTGC--T-G---C--C-A-C-C-ACCCTCGGTCCGGTCTGATCTTAGACTAG
427 GGTCCCCTTCTACGTGCTGTCGATCCTTCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGG
* *
18174285 GAATGAACTCC-TATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCGGGCACTACGTCG
492 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCG
* *
18174349 GCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTT-
557 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
18174413 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTC
622 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * ** *
18174478 ACGTTAAGTTTCATGGCAAGACGACTCGTTTTTCTACTTTTCATGATTTTCAAAACTTTTTGCGG
687 ACGTGAAGTTTCATGGCAAGATGACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* ** * * * *
18174543 TTTTGGATTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAAACTTGATCCTAT
751 TTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCT-T
* * *
18174608 -TATTTTTGTTGGCATGCACAAAAAAATTCAGCTACAAACTCGAGGTCTACAAGATTT
815 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
18174665 TGTGACCATTTGAAAAACGTTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
18174730 AAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
66 AAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
18174795 TACGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCATCA
130 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG
* * * * * * *
18174860 AAACCCCAACGCCGCCGGTCAGGTTCTCCGATGATGCTCTGACGACGGTGCCCTGGCAAAGAAAA
195 GAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * *
18174925 ATGTGGCACCAGCGCATGCCCGAGCCCAACATATGCTACCACAACCCTCGGTCCGATCTGATCTT
260 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAA----C---CC--TC--A-C-T
* *
18174990 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTATGTCAACCCACG
312 ---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * *
18175055 AAACTAGCGTACGGGCGCTCAGCCGACTAGAGGGG-TGGGATACGCAAGTCGAGGATCGATCGGG
364 AAACTAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCAGGGATGCGCAAGCCGGGGATCGGTCGGG
* * * * * * * * * *
18175119 TCCCCTTTTGCGTGCTGTTGATCCTGCTGCCACAATCTTCAGTCTGATCCGATCTTAGACTGGGA
429 TCCCCTTCTACGTGCTGTCGATCCTTCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGA
* * *
18175184 ATGAACTCCGTATGCCTAAGCGAACCGATGAAACGA----GCGGGCGGGTGGGCACTACGTCGGC
494 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGC
* * *
18175245 CAGAGAGACCGGATGCGCAAGCCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTTAT
559 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
18175310 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCAC
624 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
18175375 GTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTATGGTTT
689 GTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTT
* * * * *
18175440 GGGATTTTTTAAAATTTTTTTGGAAGGATTTTTACCCCCAAGCCTGGCAGACGTGATCCTTGTAT
754 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
18175505 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTC
819 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
18175559 TGTGACGATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
18175624 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAAGGGGCCAATA
66 AAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * *
18175689 TAAGGGCCAAGTACTAGCACCCATCGCAAATCATGTGCACACACCCCCCAGCCCCCTGATCGTCG
130 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG
* * * *
18175754 GAACCCCAATGCCGCCGGCCAGGTTCTCC-AGCGATGCTCCGGCGATGGTACCCCGACGAAGAAA
195 GAACCCCAATGCCGCCGGTCAGGTTCTCCGA-TGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * * * ** *
18175818 AATGCGACACCAGCACATGCTCGAGCCTAACATGTGCTGCCACAACCCTCGGTCTGATCCGATCT
259 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCACTCTGGTCCGATCT
* *
18175883 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACATCCGATGTTAGACTGGGAATGA
324 TAGACTGGGAATGAACTCCGTATGCCTA-A----G--TCAAC--CC--------AC---G-A--A
* *** ** **
18175948 ATTCTATATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGGGGTGGG
366 A--C--TA-G-C---GT--GCGGGCG-CTC-AGC---C--G-GCT-A----G--AG-GGGCAGGG
* * ** * * ** * * *
18176013 TTGCCCAAGTTGAGGATCGATCGGGTACCCC-TCTGTGTGCTGTCAATCCTGCTGCCGCAACCCT
404 ATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTTCTACGTGCTGTCGATCCTTCTACCGCAACCCT
* * ** * * * *
18176077 CGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATG-CTGAAGCCAACCAATGAAATGAGC
468 CGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCT-AAGCCAACCGACGAAACGAGC
* * *
18176141 GGGTGGGAGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATC
532 --------GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * *
18176206 GATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTGTACGTGCCAATGCCATTTTTATGGG
589 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
*
18176271 TTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
654 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
*
18176336 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGT
719 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGT
* *
18176401 TTTAGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATAT-AGC
784 TTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT-TCAGC
*
18176465 TAAAAACTCAAAGTGTACAAGATTT
848 TAAAAACTCGAAGTGTACAAGATTT
* * *
18176490 TGTGACCATTTGAAAAAAGTGTCCCCATTTTA-AGCACTTTAATGGCTACTGGTAGCACACCTGT
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGGCTACTGGCAGCAAACCTGT
*
18176554 AAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
65 AAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
18176619 ATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGGGCACACCCCCCCGGCTGCCTCGATCG
129 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC-CCCCCGATCG
* * * **
18176684 TCGGAACCCCAATGCCGCCGGTCATGTTCTCCGACGATGCTCCGACGATGGTGCCACGGTGAAGA
192 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * * * * **
18176749 AAAATACAGCACCAGCAGATG-CCGAGCCAAGCATCTGCTATCGTAACCCTCGGTCTGGTCTGAT
257 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAA--C-C---C---TC--A-
* * *
18176813 CTTAAACTGGGAATAAACTCCGTATGCTTAGAATGGGAATGAACTCTGAATGCCTAAGTCAACCC
310 C-T---CT-GG-------TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
18176878 ACGAAACGAGCATGCGGGTGCTCAGCAGGCCAGAGGGGC-GGGATGCGCAAGCCGGGGATCGGCC
361 ACGAAACTAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCAGGGATGCGCAAGCCGGGGATCGGTC
* ** * ** * * * * * * * *
18176942 GGGTCCCCTCCCGCTTGCTACCGATCCTACTGCTGCAACCTTCGGTTTGGTTTGATTTTAGACTG
426 GGGTCCCCTTCTACGTGCTGTCGATCCTTCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTG
* * * * *
18177007 GGAATGAACTTCGTATGCCTAAGCCAATCGAC-AAA--A-----TGAGCGGGCGGGCACTACGCC
491 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTC
* * *
18177064 GGCCAGAGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTT
556 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * *
18177129 TATATTTATGCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
621 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * **
18177194 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGG
686 CACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * * * *
18177259 TTCGGGATTTTTTAAAATTTTTTCGAAAGGTGTTGT-GCCCCCAAACTTGGTAGACGTGATCCTT
751 TTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAG-CCCCAAACTTGGTAGACGTGATCCTT
*
18177323 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
815 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
** * *
18177381 TGTGACCATTTGAAAAAAACGTCCCGATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
18177446 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
66 AAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * **
18177511 TAAGGGTCGAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCTGACCCCCCCGATCAC
130 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-G-GCCCCCCGATCGT
* * * * * * **
18177576 CGGAACCCCAATGCTGTCGATCAGGTTTTCC-AGCGATGCTTCGGTGATGGTGCCCCGACGAAGA
193 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-TGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * **
18177640 AAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCT-CTCGCAACCCTCGGTCTGGTCCGA
257 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC-CACAACCCTCACTCTGGTCCGA
18177704 TCTTAGACTGGGAATGAACTCCGTATGC
321 TCTTAGACTGGGAATGAACTCCGTATGC
18177732 TTAGACTAGG
Statistics
Matches: 7221, Mismatches: 791, Indels: 575
0.84 0.09 0.07
Matches are distributed among these distances:
842 52 0.01
843 3 0.00
844 1 0.00
846 2 0.00
847 1 0.00
849 2 0.00
851 1 0.00
852 7 0.00
853 90 0.01
854 43 0.01
855 2 0.00
858 2 0.00
860 2 0.00
862 58 0.01
863 1 0.00
864 1 0.00
865 3 0.00
866 163 0.02
867 14 0.00
868 260 0.04
869 468 0.06
870 710 0.10
871 685 0.09
872 844 0.12
873 442 0.06
874 157 0.02
875 106 0.01
876 402 0.06
877 51 0.01
878 6 0.00
879 5 0.00
880 3 0.00
881 4 0.00
883 6 0.00
884 1 0.00
885 194 0.03
886 6 0.00
887 8 0.00
888 136 0.02
889 93 0.01
890 39 0.01
891 548 0.08
892 24 0.00
893 4 0.00
894 483 0.07
895 93 0.01
896 2 0.00
897 36 0.00
898 26 0.00
899 50 0.01
900 2 0.00
902 4 0.00
903 1 0.00
904 4 0.00
906 7 0.00
907 89 0.01
908 5 0.00
909 3 0.00
910 2 0.00
911 2 0.00
915 2 0.00
916 2 0.00
917 3 0.00
918 5 0.00
919 103 0.01
920 4 0.00
922 3 0.00
923 1 0.00
924 2 0.00
926 1 0.00
929 1 0.00
930 2 0.00
931 470 0.07
932 26 0.00
933 81 0.01
934 2 0.00
935 3 0.00
937 1 0.00
938 2 0.00
941 4 0.00
945 1 0.00
948 2 0.00
949 3 0.00
951 4 0.00
953 1 0.00
956 4 0.00
957 3 0.00
958 26 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGG
AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCACTCTGGTCCGATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAGCCGGC
TAGAGGGGCAGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTCTACGTGCTGTCGATCCTTC
TACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGG
AGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTT
Found at i:18174140 original size:26 final size:26
Alignment explanation
Indices: 18174102--18174154 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18174092 CCGGTCCGAT
18174102 CTTAGACTAGGAATGAAC-CCTGTATG
1 CTTAGACTAGGAATGAACTCC-GTATG
*
18174128 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18174154 C
1 C
18174155 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18175016 original size:26 final size:26
Alignment explanation
Indices: 18174987--18175039 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18174977 CCGATCTGAT
18174987 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18175013 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18175039 C
1 C
18175040 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18175910 original size:26 final size:26
Alignment explanation
Indices: 18175874--18175948 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 26
18175864 CCTCGGTCTG
18175874 ATCCGAT-CTTAGACTGGGAATGAAC
1 ATCCGATGCTTAGACTGGGAATGAAC
18175899 -TCCGTATGCTTAGACTGGGAATGAAC
1 ATCCG-ATGCTTAGACTGGGAATGAAC
18175925 ATCCGATG-TTAGACTGGGAATGAA
1 ATCCGATGCTTAGACTGGGAATGAA
18175949 TTCTATATGC
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
24 4 0.09
25 18 0.38
26 21 0.45
27 4 0.09
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (26 bp):
ATCCGATGCTTAGACTGGGAATGAAC
Found at i:18177734 original size:26 final size:26
Alignment explanation
Indices: 18177705--18177757 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18177695 CTGGTCCGAT
*
18177705 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18177731 CTTAGACTAGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18177757 C
1 C
18177758 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18177928 original size:26 final size:26
Alignment explanation
Indices: 18177892--18177942 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18177882 GGTCCGATCA
*
18177892 TAGACTGGGAATGAACTCCATATGCT
1 TAGAATGGGAATGAACTCCATATGCT
*
18177918 TAGAATGGGAATGAACTCCGTATGC
1 TAGAATGGGAATGAACTCCATATGC
18177943 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCATATGCT
Found at i:18178021 original size:185 final size:185
Alignment explanation
Indices: 18177682--18178101 Score: 531
Period size: 185 Copynumber: 2.3 Consensus size: 185
18177672 CATGTGCTCT
* * *
18177682 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATTA
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATAGGAATGA
** * * * *
18177747 ACTCCGTATGCCTAAGACAACCCACAAAATTAGCGTGCAGGTGCTCAGCCGGCCAGAGGGGCAGG
66 ACTCCGTATGCCTAAGACAACCCACAAAACGAGCATGCAGGCGCTCAGCCGACCAGACGGGCAGG
* ** ** * *
18177812 ATGCGTAAGTCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCCTACTAT
131 ATGCGCAACCCAAGGATCGGCTGGGTCCACCTCTGCGTGCTACCGATCCTACTAC
* * * *
18177867 CGTAACCCAT-GGTCCGGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATG
1 CGCAACCC-TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATAGGAATG
* **
18177931 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGC-GAGCGCTCAGCCGACCAGACGGG-A
65 AACTCCGTATGCCTAAGACAACCCACAAAACGAGCATGCAG-GCGCTCAGCCGACCAGACGGGCA
* * * *
18177994 GGGATGCGCAACCCAAGGATTGGCTGGGTCCACCTCTGCGTGCTGCCGATCCTGCTGC
129 -GGATGCGCAACCCAAGGATCGGCTGGGTCCACCTCTGCGTGCTACCGATCCTACTAC
* *
18178052 CGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18178102 CTAAGCCAAC
Statistics
Matches: 199, Mismatches: 32, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
184 3 0.02
185 195 0.98
186 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (185 bp):
CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATAGGAATGA
ACTCCGTATGCCTAAGACAACCCACAAAACGAGCATGCAGGCGCTCAGCCGACCAGACGGGCAGG
ATGCGCAACCCAAGGATCGGCTGGGTCCACCTCTGCGTGCTACCGATCCTACTAC
Found at i:18180084 original size:26 final size:26
Alignment explanation
Indices: 18180048--18180100 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18180038 CCAGTCCGAT
* *
18180048 CTTAGACTGGGAGTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18180074 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18180100 C
1 C
18180101 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18182698 original size:25 final size:26
Alignment explanation
Indices: 18182670--18182721 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18182660 CTGATCCGAT
18182670 CTTAGAC-GGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18182695 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18182721 C
1 C
18182722 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18183603 original size:26 final size:26
Alignment explanation
Indices: 18183567--18183619 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18183557 CCGGTCCGAT
*
18183567 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18183593 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18183619 C
1 C
18183620 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18184499 original size:21 final size:20
Alignment explanation
Indices: 18184475--18184607 Score: 75
Period size: 21 Copynumber: 6.5 Consensus size: 20
18184465 TGTATTTTAT
18184475 TATTTATTATTATTATATGTA
1 TATTTATTATTATTATAT-TA
*
18184496 TATTT-TTACTTATT-TATTT
1 TATTTATTA-TTATTATATTA
* *
18184515 TTTTCTATTAATATTTATATGTA
1 TATT-TATTATTA-TTATAT-TA
18184538 T-TTTA-T-TTA-TATAGTTCTA
1 TATTTATTATTATTATA--T-TA
18184557 TATTTATTATATATTATAATT-
1 TATTTATTAT-TATTAT-ATTA
*
18184578 TATTTATTATTATTAT-TAA
1 TATTTATTATTATTATATTA
*
18184597 TTTTTATTATT
1 TATTTATTATT
18184608 TTTCTTGTAA
Statistics
Matches: 89, Mismatches: 8, Indels: 32
0.69 0.06 0.25
Matches are distributed among these distances:
17 4 0.04
18 1 0.01
19 20 0.22
20 20 0.22
21 28 0.31
22 7 0.08
23 5 0.06
24 3 0.03
25 1 0.01
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (20 bp):
TATTTATTATTATTATATTA
Found at i:18184512 original size:38 final size:37
Alignment explanation
Indices: 18184460--18184607 Score: 99
Period size: 42 Copynumber: 3.7 Consensus size: 37
18184450 TTCTTTTGTA
18184460 TTTTATGTATTTTATTATTTATTATTATTATATGTATAT
1 TTTTAT-TA-TTTATTATTTATTATTATTATATGTATAT
* * *
18184499 TTTTACTTATTTATTTTTTTCTATTAATATTTATATGTATTT
1 TTTTA-TTATTTA--TTATT-TATTATTA-TTATATGTATAT
18184541 TATTTATATAGTTCTA-TATTTATTATATATTATAAT-T-TAT
1 T-TTTAT-TA-TT-TATTATTTATTAT-TATTAT-ATGTATAT
18184581 TTATTATTA-TTATTAATTT-TTATTATT
1 TT-TTATTATTTATT-ATTTATTATTATT
18184608 TTTCTTGTAA
Statistics
Matches: 89, Mismatches: 6, Indels: 31
0.71 0.05 0.25
Matches are distributed among these distances:
36 6 0.07
37 6 0.07
38 8 0.09
39 10 0.11
40 12 0.13
41 17 0.19
42 20 0.22
43 6 0.07
44 2 0.02
45 2 0.02
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (37 bp):
TTTTATTATTTATTATTTATTATTATTATATGTATAT
Found at i:18184578 original size:17 final size:18
Alignment explanation
Indices: 18184471--18184594 Score: 58
Period size: 17 Copynumber: 7.5 Consensus size: 18
18184461 TTTATGTATT
18184471 TTAT-TATTTATTAT-TA
1 TTATATATTTATTATATA
* * *
18184487 TTATATGTATATT-TTTA
1 TTATATATTTATTATATA
* * *
18184504 CTTATTTATTT-TTTTCTA
1 -TTATATATTTATTATATA
*
18184522 TTA-ATATTTA-TATGTA
1 TTATATATTTATTATATA
*
18184538 TT-T-TATTTA-TATA-G
1 TTATATATTTATTATATA
*
18184552 TTCTATATTTATTATATA
1 TTATATATTTATTATATA
18184570 TTATA-ATTTATT-TATTA
1 TTATATATTTATTATA-TA
18184587 TTAT-TATT
1 TTATATATT
18184595 AATTTTTATT
Statistics
Matches: 83, Mismatches: 13, Indels: 23
0.70 0.11 0.19
Matches are distributed among these distances:
14 2 0.02
15 10 0.12
16 24 0.29
17 33 0.40
18 14 0.17
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (18 bp):
TTATATATTTATTATATA
Found at i:18185226 original size:20 final size:20
Alignment explanation
Indices: 18185201--18185250 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
18185191 TCCGACGAAC
* *
18185201 TTCCGATGAAAAAACCTAGA
1 TTCCGATGAAAAAACCCAAA
*
18185221 TTCCGATGACAAAACCCAAA
1 TTCCGATGAAAAAACCCAAA
*
18185241 ATCCGATGAA
1 TTCCGATGAA
18185251 TCTCCAACCG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.44, C:0.24, G:0.14, T:0.18
Consensus pattern (20 bp):
TTCCGATGAAAAAACCCAAA
Found at i:18185622 original size:21 final size:21
Alignment explanation
Indices: 18185598--18185640 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
18185588 TTTTTTTGAA
18185598 TGTTT-TTTATTTTCATTTATT
1 TGTTTATTTATTTT-ATTTATT
* *
18185619 TGTTTATTTGTTTTTTTTATT
1 TGTTTATTTATTTTATTTATT
18185640 T
1 T
18185641 ATTAGATTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.12, C:0.02, G:0.07, T:0.79
Consensus pattern (21 bp):
TGTTTATTTATTTTATTTATT
Found at i:18185686 original size:17 final size:16
Alignment explanation
Indices: 18185652--18185691 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
18185642 TTAGATTAGG
*
18185652 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
18185668 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
18185685 TTTATTT
1 TTTATTT
18185692 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:18185698 original size:17 final size:17
Alignment explanation
Indices: 18185678--18185720 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
18185668 TTTATCTTAA
18185678 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
18185694 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
18185712 TTTTATTTT
1 TTTTATTTT
18185721 ATTATTCTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 20 0.91
18 2 0.09
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.81
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:18185728 original size:22 final size:22
Alignment explanation
Indices: 18185680--18185728 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
18185670 TATCTTAATT
*
18185680 TTATT-TTTATTTTTGTTTTAC
1 TTATTCTTTATTTTTATTTTAC
18185701 TT-TTCTTTATTTTTTATTTTA-
1 TTATTCTTTA-TTTTTATTTTAC
18185722 TTATTCT
1 TTATTCT
18185729 ATTTTCTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 2 0.08
21 8 0.33
22 14 0.58
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (22 bp):
TTATTCTTTATTTTTATTTTAC
Found at i:18185821 original size:58 final size:57
Alignment explanation
Indices: 18185750--18185968 Score: 327
Period size: 58 Copynumber: 3.8 Consensus size: 57
18185740 ATAAAAATCA
*
18185750 AAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAA-TTTCCTTGGAAAT
1 AAATTTCCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT
18185808 CAAAGTTT-CAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 -AAA-TTTCCAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT
18185868 AAATTTCC-AAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAT
1 AAATTTCCAAAAAAAATA-TTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAT
*
18185925 AAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCA
1 AAATTTCCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCA
18185969 TTTGATTTTG
Statistics
Matches: 150, Mismatches: 3, Indels: 15
0.89 0.02 0.09
Matches are distributed among these distances:
57 17 0.11
58 70 0.47
59 49 0.33
60 14 0.09
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.34
Consensus pattern (57 bp):
AAATTTCCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAT
Found at i:18190321 original size:903 final size:898
Alignment explanation
Indices: 18187946--18191286 Score: 4464
Period size: 903 Copynumber: 3.7 Consensus size: 898
18187936 TACGCCGACT
18187946 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
** * * *
18188011 TTTCTATGTGCCAATGCCATTTTTGCT-GCTTTTAAAATCATACAATGGTCCCTTAAGCCTTCAC
66 TTTCTACATGCCAATGCCATTTTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
18188075 GTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTGTGGTTT
130 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG-TT
** * *
18188140 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTAT
194 CAGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
18188205 TTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTT
259 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTT
*
18188270 GAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
324 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
18188335 GCTCTTTCAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAA
389 GCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
18188399 GTACCAGCACCCATCGCACATCATGTGCGCAGACCCCCCCCCGCCCCCCGATCGTCGAAACCCCA
453 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCGATCGCCGGAACCCCA
* * * * *
18188464 ATCCCACCGGTCTGGTTCTCCGGCGATGCTCCGACGATGGTGTCCCGACGAAGAAAAATGCGGCA
517 ATGCCACCGGTCAGGTTCTCCGGCGATGCT-TGGCGATGGTGCCCCGACGAAGAAAAATGCGGCA
* *
18188529 CCAGCAGATGCCTGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C--T--G-TC------CGG-
581 CCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGATGGGA
* * *
18188577 -T---CT--G-AT-CTTAGACTGGGAATCAACTCC-GTATACCTAAGTCAACCCATAAAACGAGC
646 ATGAACTCCGTATGCTTAGACTGGGAATAAAC-CCTGTATGCCTAAGTCAACCCACAAAACGAGC
*
18188633 GTGCGGGCGCTCAGCCGGTCAGAGGGGCGGGATGC-ACAAGCCGGGGATCGATCGGGTCCCCCTC
710 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGA-AAGCCGGGGATCG-TCGGGTCCCCCTC
* * * * * *
18188697 TGCATGCTATCGAGCCTGCTACCGCAACCTTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
773 TGCGTGCTATCGATCCTGCTACCGCAACCCTCGATCTGGTCAGATCTTAGACTGGGAATGAACTC
* * * * *
18188762 CGTATGACTAAGCCAACTGACAAAACGAGCGGACGGGCGGGCA--CT---AC-G-TCGGCC
838 CATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCAGGCTGGCACTGCCCGGCC
18188816 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
18188881 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACA
66 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* *
18188946 TGAAGTTTCATGGC-AGACGATTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTGCGGTTC
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTGCGGTTC
* * *
18189010 GGGAATTTTTAAAATTTTTTCGGAAGGAGTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
195 -AGATTTTTTAAAATTTTTTCGGAAGGA-CTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
**
18189075 -TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATT
258 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATT
* *
18189139 TGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAG
323 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
18189204 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
388 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
*
18189269 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCACCTCGATCGCCGGAACCCCA
453 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC-CCCCGATCGCCGGAACCCCA
* * * * * * * * **
18189334 ATGCCGCGGGTCAGGTTCTCCGGCGATGGTTCAGTGATGGTGACCCGGCGAAGGAAAATGCAACA
517 ATGCCACCGGTCAGGTTCTCCGGCGATGCTT-GGCGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * ** *
18189399 CCAGCAAATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGCCCGATATTAGATTGGG
581 CCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGA-TGGG
* *
18189464 AATGAACTCCGTTTGCTTAGACTGGGAATAAACCCTGTATGCCTAAGTTAACCCACAAAACGAGC
645 AATGAACTCCGTATGCTTAGACTGGGAATAAACCCTGTATGCCTAAGTCAACCCACAAAACGAGC
* * * ** * * *
18189529 ATGCGGGCTCTCAGCCGGCCAGTGGGGCGGGATGCGAAAGTTGGGGACCAGCCGGGTCCCCCTCC
710 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGAAAGCCGGGGATC-GTCGGGTCCCCCTCT
** * * *
18189594 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCTGGTCCGTTCTTAGACTGGGAATGAACTCC
774 GCGTGCTATCGATCCTGCTACCGCAACCCTCGATCTGGTCAGATCTTAGACTGGGAATGAACTCC
*
18189659 ATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCTGGCACTGCACCGGCC
839 ATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCAGGCTGGCACTGC-CCGGCC
* * * * *
18189720 AAAAAGACGGGACGCGTAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
18189785 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
66 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* ** *
18189850 TGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTCCAATCTTTTTGCGGTTCA
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCA
* * * *
18189915 GATTTTTTAAAATTTTTTTGAAAGGACTATTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTT
196 GATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* ** * *
18189980 TTGTTGGCCTGCACAAAGCAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGA
261 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGA
*
18190045 AAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
326 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
18190110 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
391 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
18190175 CCAGCACCCATCGTACATCATCTACGCACACCCACCCGACCCCTCCGATCGCCGGAACCCCAATG
456 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGCCGGAACCCCAATG
** * * *
18190240 CCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGACGGTGCCCCGATGAAGAAAAATGTGGCACCA
520 CCACCGGTCAGGTTCTCCGGCGATGCT-TGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * *
18190305 GCACTTGCCTGAGCCCAGCATGTGCTGCCGCAA-CCTGCGGTCTAATCCGCTCTTAGACTGGGAA
584 GCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCT-CGGTCCAATCCGATCTTAGA-TGGGAA
* * * * * *
18190369 TGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCAACGAAACAAGCGT
647 TGAACTCCGTATGCTTAGACTGGGAATAAACCCTGTATGCCTAAGTCAACCCACAAAACGAGCGT
* * * * * * * *
18190434 GCGAGCGCTCAGCCGGCCAGAGGGGCAGAATGCGTAAGCCAGTGATCGGTCGGGTCCTCCTCTAC
712 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGAAAGCCGGGGATC-GTCGGGTCCCCCTCTGC
* * * * * * * * *
18190499 GTACTATCGATCTTGTTCCCGGAAACCTCGATCCGATCAAATCTTAGACTGGGAATGAACTCCAT
776 GTGCTATCGATCCTGCTACCGCAACCCTCGATCTGGTCAGATCTTAGACTGGGAATGAACTCCAT
* * * * **
18190564 ATGCCTAAGCCAACCGACAAAACGAGCGAGCGGACGGGC-GGCCGGGCACTACGCTTGCC
841 ATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCAGG-CTGGCACTGC-CCGGCC
*
18190623 AGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
18190688 TTTCTACGTGCCAATGGCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACG
66 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
*
18190753 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCA
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCA
* * * *
18190818 GGATTTTTTAAAATTTTTTTGGAAGGACTTTTGGCCCCAAAGTTGGTAGATGTGATACTTGTATT
196 -GATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
18190883 TTTGTTGGCATGCACAAAAAACTTCAACTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTG
260 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTG
* * * * * *
18190948 AAGAAATTGTCCACATTTCAGACATTTTGATGGCTACTGGCAACAAACCTGTAAAATCTCAAATG
325 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
18191013 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGT
390 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
18191078 ACCAGCACCCAT-GCACATCATGTGTGCACACCCCCTCGGCCCCCCGACCGACGGAACCCCAATG
455 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATG
*
18191142 CCACCGGTCAGGTTCT----C-A-----GGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAG
520 CCACCGGTCAGGTTCTCCGGCGATGCTTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * ** * **
18191197 CACATG-CTCGAGCCCAGCATGTGCTACCGTAACTGTTGGTCCAATCTAATCTTAGAATGGGAAT
585 CACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAG-ATGGGAAT
*
18191261 GAACTTCGTATGCTTAGACTGGGAAT
648 GAACTCCGTATGCTTAGACTGGGAAT
18191287 GAACTCCATC
Statistics
Matches: 2181, Mismatches: 236, Indels: 87
0.87 0.09 0.03
Matches are distributed among these distances:
869 51 0.02
870 482 0.22
871 36 0.02
872 1 0.00
874 1 0.00
875 1 0.00
879 1 0.00
880 1 0.00
887 2 0.00
889 1 0.00
890 2 0.00
891 107 0.05
892 4 0.00
894 1 0.00
895 3 0.00
896 187 0.09
897 3 0.00
898 3 0.00
901 2 0.00
902 74 0.03
903 779 0.36
904 408 0.19
905 31 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCA
GATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
CACCGGTCAGGTTCTCCGGCGATGCTTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
ACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGATGGGAATGAA
CTCCGTATGCTTAGACTGGGAATAAACCCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
GCGCTCAGCCGGCCAGAGGGGCGGGATGCGAAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCT
ATCGATCCTGCTACCGCAACCCTCGATCTGGTCAGATCTTAGACTGGGAATGAACTCCATATGCC
TAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCAGGCTGGCACTGCCCGGCC
Found at i:18190407 original size:26 final size:26
Alignment explanation
Indices: 18190356--18190408 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18190346 CTAATCCGCT
*
18190356 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18190382 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
18190408 C
1 C
18190409 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18191553 original size:302 final size:299
Alignment explanation
Indices: 18191006--18191595 Score: 882
Period size: 302 Copynumber: 2.0 Consensus size: 299
18190996 CTGTAAAATC
*
18191006 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGG
1 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAACATAAGG
* *
18191071 GCCAAGTACCAGCACCCATGCACATCATGTGTGCACACCCCCTCGGCCCCCCGACCGACGGAACC
66 GCCAAGTACCAGAACCCATGCACATCATGTGCGCACACCCCCTCGGCCCCCCGACCGACGGAACC
* * * *
18191136 CCAATGCCACCGGTCAGGTTCTCAGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACA
131 CAAATCCCACCGATCAGGTTCTCAGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACA
* * *
18191201 TGCTCGAGCCCAGCATGTGCTACCGTAACTGTTGGTCCAATCTAATCTTAGAATGGGAATGAACT
196 TGCTCAAGCCCAGCATGTGCTACCGCAACTGTCGGTCCAATCTAATCTTAGAATGGGAATGAACT
* *
18191266 TCGTATGCTTAGACTGGGAATGAACTCCATCTACCTAAG
261 CCGTATGCTTACACTGGGAATGAACTCCATCTACCTAAG
* *
18191305 TCAAATGCTCTTTAAGGGGTTGTGAGTTC-CTGAGGTTTGATGAGGGATAGGGGGCCAACATAAG
1 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATAAGGGATAGGGGGCCAACATAAG
* *
18191369 GGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCTCCCGGCCTCCCGATC-ATCG
65 GGCCAAGTACCAGAACCCAT-GCACATCATGTGCGCACACCCCCT--CGGCCCCCCGACCGA-CG
*
18191433 GAACCCAAATCCCACCGATCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCA
126 GAACCCAAATCCCACCGATCAGGTTCTCAGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCA
* ** * * *
18191498 GCACATGC-CTAAGCCCAGCATGTGTTGTCGCAACCT-TCGGTCCAGTCTGATCTTAGACTGGGA
191 GCACATGCTC-AAGCCCAGCATGTGCTACCGCAA-CTGTCGGTCCAATCTAATCTTAGAATGGGA
18191561 ATGAACTCCGTATGCTTACACTGGGAATGAACTCC
254 ATGAACTCCGTATGCTTACACTGGGAATGAACTCC
18191596 GTATGCTTAC
Statistics
Matches: 261, Mismatches: 23, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
298 1 0.00
299 78 0.30
300 23 0.09
301 2 0.01
302 155 0.59
303 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (299 bp):
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAACATAAGG
GCCAAGTACCAGAACCCATGCACATCATGTGCGCACACCCCCTCGGCCCCCCGACCGACGGAACC
CAAATCCCACCGATCAGGTTCTCAGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACA
TGCTCAAGCCCAGCATGTGCTACCGCAACTGTCGGTCCAATCTAATCTTAGAATGGGAATGAACT
CCGTATGCTTACACTGGGAATGAACTCCATCTACCTAAG
Found at i:18191585 original size:26 final size:26
Alignment explanation
Indices: 18191549--18191627 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
18191539 CCAGTCTGAT
*
18191549 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18191575 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
18191601 CTTACACCGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18191627 C
1 C
18191628 CTAAGTCGAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18192517 original size:26 final size:26
Alignment explanation
Indices: 18192466--18192518 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18192456 CTAATCCGCT
*
18192466 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18192492 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
18192518 C
1 C
18192519 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18193055 original size:904 final size:901
Alignment explanation
Indices: 18191575--18195172 Score: 4579
Period size: 909 Copynumber: 4.0 Consensus size: 901
18191565 ACTCCGTATG
* * * *
18191575 CTTACACTGGGAATGAACTCCGTATGCTTACACCGGGAATGAACTCCGTATGCCTAAGTCGACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
18191640 ACGAAACGAGCATGCGGGCACTCAGCCGACCAGAGGGACGGGATGCGTAAGTC-GAGGATCGACC
66 ACGAAACAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCAG-GGATCGGCC
* * * * * * * * *
18191704 GGGTCCCCCGCTGCATGCTATCGATCCTGCTACAGTAACCCTC-AGTCTGATTCA-ATCTTAGAC
130 GGGTCCCCCTCTACGTGCTGTCGATCTTG-TTC-GCAACCCTCGA-TCCG-GTCAGATCTTAGAC
* * * * * *
18191767 TGGGAGTGAATTTCGTACGCCTAAGCCAACCGACG--A--A---A-C-GA---GTGGGCTGGCAC
191 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCAC
*
18191820 TACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCTATAGGGTGGTAGGTGGGTTTAGGCA
256 TACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
18191885 CATCCTCATATTTCTGCATGCCCATGCCATTTTTATGGCTTGTAAATTCATAC-ATGGTCCCTTA
321 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
18191949 AGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
386 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * *
18192014 TTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTTGCCCCAAACTTGGTAGACGTGA
451 TTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
18192079 TCCTTGTATTTTTGTTGGCATGTAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
516 TCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
*
18192144 TGACCATTTGAAAAAAGTGTCTCCATTCCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAA
581 TGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAA
18192209 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
646 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
** * * *
18192274 AGGGCCAAGTACCAGCACCCATTGCACATCATCTACGCACACCCACCCGACCCCTCCGATCGTCG
711 AGGGCCAAGTACCAGCACCCATCACACATCATGTACGCACACCC-CCCGGCCCCCCCGATCGTCG
* * * * *
18192339 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGACGGTGCCCCGATGAAGAAAA
775 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * *
18192404 ATGTGGCACCAGCACTTGCCTGAGCCCAGCATGTGCTGCCGCAA-CCTGCGGTCTAATCCGCT
840 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-CGGTCCAATCCGAT
** *
18192466 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCA
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
18192531 ACGAAACAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCAGAATGCGTAAGCCAGTGATCGGTCG
66 ACGAAACAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCAGGGATCGGCCG
* * * * * *
18192596 GGTCCTCCTCTACGTACTATCGATCTTGTTCCCGGAAACCTCGATCCGGTCAAATCTTAGACTGG
131 GGTCCCCCTCTACGTGCTGTCGATCTTGTT--CGCAACCCTCGATCCGGTCAGATCTTAGACTGG
* * *
18192661 GAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGAGCGGACGGGCGGCCGGGCACTAC
194 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTAC
** * *
18192726 GCTTGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
259 GCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
18192791 CTTCATATTTCTACGTGCCAATGGCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGC
324 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
18192856 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
389 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * * * * *
18192921 CGATTCAAGATTTTTTAAACTTTCTTCGGAAGCAGTTTTGGGCCCAAACTTGGTAGACATGATCC
454 CGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * **
18192986 TTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGA
519 TTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
* * *
18193051 CCATTTGAAAAAAGTG-CCCCTATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAAT
584 CCATTTGAAAAAAGTGTCCCC-ATTCCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAAT
* * * *
18193115 CTCAAATGCTCTTTAAGAGGGTGTGAGTTCTC-ACAGTTTGATGAGGGATAAGAGGGCCAATATG
648 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGAT-AGGGGGCCAATATA
* * * * *
18193179 AGGGCCAAGAACCAGCACCCATTGCACAC-T-ATGTGCGCACACCCCCTGGTCCCCCCGATCGTT
711 AGGGCCAAGTACCAGCACCCA-T-CACACATCATGTACGCACACCCCCCGGCCCCCCCGATCGTC
* * * *
18193242 GGAACCCCAATGTCGTCGGTCAAGTTCT-C--C---G----G-CGATGGTGCCCCGACGAACAAA
774 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * *
18193296 AATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTC-G--------G-T
839 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGAT
*
18193349 C-----C---G-AT---CT--G-AT-CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
18193398 ACGAAACAAACATGC-AGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGAAAGCCGGGGATCGACC
66 ACGAAACAAGCGTGCGA-GCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCAGGGATCGGCC
* *
18193462 GGGTCCCCCTCTACGTGCTGTCGATCCTACTGTT-GCAACCCTCAATCCGGTCGGATCTTAGACT
130 GGGTCCCCCTCTACGTGCTGTCGAT-CT--TGTTCGCAACCCTCGATCCGGTCAGATCTTAGACT
* * * * *
18193526 GGGAATGAACTTCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCAGACGGGCGGGCGGGCACG
192 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACT
* *
18193591 ACGCTGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCAC
257 ACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
18193656 ATCTTCATATTTCTACGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
322 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
18193721 GCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
387 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
18193786 TGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTTGCCCCAAACTTGGTAGACGTGAT
452 TACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
18193851 CCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
517 CCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
*
18193916 GACCATTTGAAAAAAGTGTCTCCATTCCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAA
582 GACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAA
* * * *
18193981 TCTCAAATGCTCTTTAAGGGGGTGTGAGATCTCAAGCTTTGATGAGGGATAAGGGGCCAATATAA
647 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
18194046 GGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCACCCCCCGGCCCCCCCGATC
712 GGGCCAAGTACCAGCACCCATCACACATCATGT--ACGCA----CACCCCCCGGCCCCCCCGATC
* * ** * * *
18194111 GCCGGAACCCCAATGCCGCCAGTCAGGTTCTCTAGTGATGCTCCGACGATGGTGCTCTGACGAAG
771 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* * * *
18194176 AAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGATCCAATCTGA
836 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGA
18194241 T
901 T
* * *
18194242 CTTAGACTGGGAATGAACTACGTATGCTTAGGCTGGGAATGAAATCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
18194307 ACGAAACGAGTGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCTTAAGCCAGGGATCGGCCT
66 ACGAAACAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCAGGGATCGGCCG
* * * * ** * * *
18194372 GGTCCCCCTCT-GGATGCTGCCAATCCTGCTGTCATAACCCTATG-TTCGGTCTGATCTTAGACT
131 GGTCCCCCTCTACG-TGCTGTCGATCTTG-T-TCGCAACCCT-CGATCCGGTCAGATCTTAGACT
* * *
18194435 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGAGCGGGCAGGCGGGCGGAG-AC
192 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGGGCGGGCGG-GCAC
* * * *
18194499 TATGCCGGCCAGAGAGACGGGATGGGCAAGTCGTGGATCGGTAGGGTGGTAGATGGGTTTAGGCA
256 TACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
18194564 CATCTTCATATTTCTACATGCCAATACCGTTTTTATGGCTTGTAAATTCATACAATGGTCCTTTA
321 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
18194629 AGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTTACGATTTTTGAAACTTT
386 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * ** *
18194694 TTACGGTTCGGGATTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTTGTAGACGTGA
451 TTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * * *
18194759 TCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGCACAAGATTTTG
516 TCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
* * * * *
18194824 TGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCGGCAAACTTGTAAA
581 TGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAA
*
18194889 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATA
646 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * **
18194954 ATGGCCAAGTACCAGCACCCATCACACATCCTGTGGGCACACCCCCCGGCCCCCCCGATCGTCGG
711 AGGGCCAAGTACCAGCACCCATCACACATCATGTACGCACACCCCCCGGCCCCCCCGATCGTCGG
* * **
18195019 AACCCCGATGCCACCGGTCAGGTTCTCCTACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
776 AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG-AAAA
* * * * * * *
18195084 ATATGGCACCAGCACCTGCTCGAGCCTAGCATGTGCTGCCGTAACCCTCAGTCCAGTCCGAT
840 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGAT
* *
18195146 CTTAGA-TCGAGAATGAACTCTGTATGC
1 CTTAGACT-GGGAATGAACTCCGTATGC
18195173 CTAAGTCAAC
Statistics
Matches: 2339, Mismatches: 284, Indels: 155
0.84 0.10 0.06
Matches are distributed among these distances:
864 5 0.00
865 2 0.00
866 36 0.02
867 594 0.25
868 11 0.00
869 1 0.00
870 4 0.00
871 2 0.00
872 44 0.02
874 2 0.00
875 1 0.00
878 2 0.00
882 1 0.00
883 66 0.03
884 1 0.00
890 4 0.00
891 179 0.08
892 5 0.00
893 63 0.03
894 4 0.00
895 1 0.00
898 3 0.00
899 1 0.00
900 2 0.00
901 2 0.00
902 2 0.00
903 198 0.08
904 410 0.18
905 46 0.02
906 4 0.00
907 7 0.00
908 5 0.00
909 630 0.27
910 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCAGGGATCGGCCG
GGTCCCCCTCTACGTGCTGTCGATCTTGTTCGCAACCCTCGATCCGGTCAGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGC
CGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
GTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCACACATCATGTACGCACACCCCCCGGCCCCCCCGATCGTCGGAACCC
CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGG
CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGAT
Found at i:18194278 original size:26 final size:26
Alignment explanation
Indices: 18194242--18194294 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18194232 CCAATCTGAT
*
18194242 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAAATACGTATG
* *
18194268 CTTAGGCTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATACGTATG
18194294 C
1 C
18194295 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATACGTATG
Found at i:18195415 original size:159 final size:159
Alignment explanation
Indices: 18195126--18195500 Score: 436
Period size: 159 Copynumber: 2.4 Consensus size: 159
18195116 GTGCTGCCGT
* *
18195126 AACCCTCAGTCC-AGTCCGATCTTAGA-TCGAGAATGAACTCTGTATGCCTAAGTCAACCCACGA
1 AACCCTCAGTCCGA-TCCGATCTTAGACTCG-GAATGAACTCCGTATGCCTAAGTCAACCCACAA
* ** ** *
18195189 AATGAGCGTTGGAGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGCTAAGGATCGGCCGAGTC
64 AACGAGAATACGAGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGCTAAGGATCGACCGAGTC
* * * *
18195254 CCCTTCTGGGTGCTGCCGATCCTACTG-TCGC
129 CCCCTCTGCGTGCAGCCAATCCTACTGCT-GC
* *
18195285 AACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
1 AACCCTCAGTCCGATCCGATCTTAGACTCGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
* * ** * *
18195350 CGAGAATACGAGCGCTCAGTCGGCCAGAGGGGCGGGA-AGCGTAAG-TCGGGGATCGATCGGGTC
66 CGAGAATACGAGCGCTCAGCCGGCCAGAGGGGCGGGATA-CGCAAGCT-AAGGATCGACCGAGTC
*
18195413 CCCCTCTGCGTGCAGCCAATCCTGCTGCTGC
129 CCCCTCTGCGTGCAGCCAATCCTACTGCTGC
* * * * *
18195444 AACCCTCAGTCCGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
1 AACCCTCAGTCCGATCCGATCTTAGACTCGGAATGAACTCCGTATGCCTAAGTCAAC
18195501 TGACGAAATC
Statistics
Matches: 184, Mismatches: 27, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
158 2 0.01
159 178 0.97
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
AACCCTCAGTCCGATCCGATCTTAGACTCGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
CGAGAATACGAGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGCTAAGGATCGACCGAGTCCC
CCTCTGCGTGCAGCCAATCCTACTGCTGC
Found at i:18196213 original size:26 final size:26
Alignment explanation
Indices: 18196184--18196236 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18196174 CCAGTCCGAT
*
18196184 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18196210 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18196236 C
1 C
18196237 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18196360 original size:21 final size:21
Alignment explanation
Indices: 18196334--18196381 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
18196324 TGTGTGCTGC
18196334 CGATCTTATTGCTGCAACCCT
1 CGATCTTATTGCTGCAACCCT
18196355 CGATCTTATTGCTGCAACCCT
1 CGATCTTATTGCTGCAACCCT
18196376 CGATCT
1 CGATCT
18196382 GGTCTGATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.19, C:0.33, G:0.15, T:0.33
Consensus pattern (21 bp):
CGATCTTATTGCTGCAACCCT
Found at i:18197136 original size:25 final size:26
Alignment explanation
Indices: 18197103--18197159 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
18197093 CTTGGTGCGG
18197103 TCCG-ATC-TTAGACTGGGAAT-GAAC
1 TCCGTATCTTTAGACTGGG-ATGGAAC
18197127 TCCGTATCTTTAGACTGGGATGGAAC
1 TCCGTATCTTTAGACTGGGATGGAAC
18197153 TCCGTAT
1 TCCGTAT
18197160 GCCTAAGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.13
25 5 0.17
26 21 0.70
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
TCCGTATCTTTAGACTGGGATGGAAC
Found at i:18198003 original size:26 final size:25
Alignment explanation
Indices: 18197974--18198022 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
18197964 GTCCGATCTG
18197974 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACT-CGTATGCTT
18198000 AGACTGGGAATGAACTCGTATGC
1 AGACTGGGAATGAACTCGTATGC
18198023 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (25 bp):
AGACTGGGAATGAACTCGTATGCTT
Found at i:18199552 original size:26 final size:26
Alignment explanation
Indices: 18199523--18199575 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18199513 CCAGTCCGAT
*
18199523 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18199549 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18199575 C
1 C
18199576 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18200254 original size:26 final size:26
Alignment explanation
Indices: 18200225--18200277 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18200215 CCGGTCTGAT
* *
18200225 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
18200251 CTTAGACTAGGAATCAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
18200277 C
1 C
18200278 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:18202754 original size:26 final size:26
Alignment explanation
Indices: 18202718--18202770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18202708 CTGGTCCGAT
18202718 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
18202744 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18202770 C
1 C
18202771 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18203658 original size:26 final size:26
Alignment explanation
Indices: 18203619--18203671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18203609 CTGGTCCGAT
* *
18203619 CTTAGACTGTGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18203645 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18203671 C
1 C
18203672 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18205034 original size:903 final size:901
Alignment explanation
Indices: 18201979--18216222 Score: 18601
Period size: 899 Copynumber: 16.0 Consensus size: 901
18201969 GCCTAGCATG
* * * *
18201979 TGCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18202044 CCGACGAAACGA----GTGGGCGGGC--G-GGCACTACGTCGACCAGAGAGACGGGATGCGCAAG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
18202102 CCGTGGATCGATAGCGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
131 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
18202167 TTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
196 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
18202232 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
261 ACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
* ** *
18202297 GGTAGGAGTTTTGATCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
18202362 AATTCAGCTAAACACTTC-AAGTGTACAAGATCTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
390 AATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18202426 AGACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18202491 TTCTCAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
18202556 CATGTGTGCACA-CCCCCCGACCCCCCTGATCGTCGGAACCCCAATGTCGCCGGTAAGGTTCTCC
584 CATGTGCGCACACCCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * ** *
18202620 GGTGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACAACACCAGCACATGCGCGAGCCCAG
648 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * *
18202685 CATGTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
713 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
18202750 TTGGGAATGAACTCCGTATGCCTAAGTCAACGCATGAAACGAGCATGCGGGCGCTCAGCCGGCTA
778 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * * * *
18202815 GAGGGACAGGATGCGCAAGTCGGGGATCGCCCGGGTCCCCTTCTACGTGTTACCGATCC
843 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * * * * *
18202874 TGCTGTCATATCCCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGACTAAGCTAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
18202939 CCGACG-AACGGAGTGGGCGGGTGGGCAGGCAGGCACAATGTCAGCCAGAGAGACGGGATGCGCA
66 CCGACGAAAC-GAGCGGGCGGGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * ***
18203003 AGCCATGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* **
18203068 ATTTTAATGGCTTGTAAATTCATACAATGGTCCCCGAAGCCTTCACGTGAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
18203133 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTGTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
* * * * *
18203198 TCGGAAGGCGTTTTGGCCCCAAAATTGGTAGACTTGATCCTTTTATTTTTGTTGTCATGCACAAA
323 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18203263 AAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18203328 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGAGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* **
18203393 GTTCTCGAGGTTTGAT-ATGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCAAAGCAC
518 GTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
18203457 ATCATGTGCGCACA-CCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTC-
582 ATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** * *
18203520 CCTGGCGATGCTCCGACG-TTGTGCCCCGGTGAAGAAAAATAC-GCACCAGCAAATGCCCAAGCC
646 CC-GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * * *
18203583 CAGTATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGTGAATGAACTTCGTATGCTT
710 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
18203648 AGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGAGGGCGCTCAGCCAG
775 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * *
18203713 CCAGAGGGGTGGGATGCACAAGCCGGGGATCGGCCGGCTCCCCATCTGCGTCCTGCCGATCT
840 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
18203775 TGCTGCCGCAACCTTTGGTCCT-GTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18203839 ACCGACGAAACGA----GCGGGCGGGCGGGC-G-AC-ACGCCGGCCAAAGAGTCAGGATGCGTAA
65 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
18203897 GCCGTGGATTGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCT
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18203962 TTTTTATGGCTTGTAAATCCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
18204027 GACCCATTTTCTATTTTTCACGATTTTCGAAACTCTTTGCGGTTCGGGATTTTTTTAAATTTTTT
260 GACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* * *
18204092 CAGAAGGAGTTTTGGCCCCAAACTTGTTAGATGTGATCCTTGTATTTTTGTTGGCATGCA-AAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18204156 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACTATTTGAAAAATGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
18204221 AGACACTTTAATTGCTACTGGCAACAAACTTGTAAAATCTAAAATGCTCTTTAAGGAGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
18204286 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** *
18204351 CATGTGCGCACACCCCCCCAACCCCCCTAATC-TCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
584 CATGTGCGCACACCCCCCCGGCCCCCC-GATCGT-CGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
18204415 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCAGCAACACAAGCCCGAGCCCA
647 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * * * * * ***
18204480 GCATGTGCTGTCGTAATCCTCGGTCTGGTCCGATTTTAGACTGGGAACGAACTCCGTATAAATAG
712 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
** *
18204545 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCG-GACGGGCGCTCAGCTGGC
777 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCGCTCAGCCGGC
* * * * * *
18204609 CAGAGGGGTGGGATGCGCAAGCCGGTGATCGACCGGGTCCCCTTCTGCATGTTACCGATCC
841 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
18204670 TACTGCCTCAACCCTCAGTTTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18204735 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTATGTCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCG-GCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
18204800 GCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGGATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18204865 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCGAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18204930 AACTCGTTTTCTATTTTTCACGACTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* * *
18204995 CGGAAGGGGATTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18205060 AAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18205125 AGACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGATGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * ** * * *
18205190 TTTTTGAGGTTTGATGAGGGATAGGATGCCAAGATAAGGGCCAAGTACTAGCACCCATCACACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
18205255 CATGTGCACACACCCCCCCGGCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
584 CATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * **
18205320 GATGATGCTCCGGCGATGGTGCCTCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
648 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * * * *
18205385 CATGTGCTGTCGTAACCCTCGGTCTGG-CTCGATCTTAGATTGGGAATGAACTTCGTATGCTTAG
713 CATGTGCTGCCGCAACCCTCGGTCCGGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
18205449 ACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGTCGGTC
777 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * ** *
18205514 -GAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCT
842 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
*
18205573 TGCTGCCGCAACCCTTGGTCTGGT-TCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18205636 ACTGACGAAACGTGCGGGCGGG-GGAGCGGGCGAGCACTACGCCGGCCAGAAAGACGGGACGCGC
65 ACCGACGAAACGAGCGGGCGGGCGG-GCGGGCG-GCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
18205700 AAGCCGTGGATCAATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
128 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
18205765 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAG
193 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
18205830 ATGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC-GAGATTTTTTAAAATTT
258 ACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTACGGTTCAG-GATTTTTTAAAATTT
* * * *
18205894 TTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCAAA
321 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
18205959 AAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCAT
386 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
18206024 TTCAGATACTTCAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGT
451 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
18206089 GAGTTCTC-ATAGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
516 GAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * * *
18206153 ACATCATGTGCGCCCACCCCACCGGGCCCCCCGATCGCCAGAACCCAAATGCTGCCTGTCAGGTT
580 ACATCATGTGCGCACACCCC-CCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *** * *
18206218 CTCTGGCGTTGCTCCGACGATGGTGCCCCGACGAAGAAAAAGGTGGCACCAGCACATGCCTGAAC
644 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
*
18206283 CCAGCATGTGCTGGCGCAACCCT---T---G---G-TC-----C-----A-G---TCCG-AT-CT
709 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
18206322 TAGACTGGGAATGAACTCCGTACGCCTGAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
774 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * ** ** *
18206387 GCTAGAGGGGCGAGCTCCGCAAGCTGGGGATTGGTCGGGTCCCCCTCTGCGTGCTGCATATCT
839 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
18206450 TGCTACCGTAACCCTTGGTCCGGTCCGATCTTAG-CTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18206514 CCGACAAAACGAGCGGGCGGGCGGGCGGACGGGCATTACGTCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
18206579 GCCGTCGATCGATAGGGTGGTAGGTAGGTTTATGCACATCTTCATATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18206644 TTTTTATGGCTTGTAAATTCATACTACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** * *
18206709 GACTCGTTTTCTATTTTTCACGATTTTCGAAACATTTTGCGGTTTGGGATTTTTTGAAATTCTTT
260 GACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
*
18206774 CGGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18206838 AAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18206903 AGGCACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18206968 TTCTCGAGGTTTGATGAGGGCTAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
18207033 CATGTGCGCACACCCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCC
584 CATGTGCGCACACCCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
18207098 GGC-A----------ATTGTACCCTGACGAAGTAAAATGCGGCACTAGCACATGCCCGAGCCCAG
648 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
** * ** * *
18207152 CATGTGCTATCACAACCCTCGGTCAAGTCCGCTCTTAGACTGGGAATGAACTCCGTTTGCTTAGA
713 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * * *
18207217 CTAGGATTGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGCGTGCGGGCGGTCAACCGGCCA
778 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
18207282 GAAGGGCGGGATGCACAAGCCGTGGATC-AGCCGGGTACCCCTCTGCATGCTGCCGATCC
843 GAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** ** * * * * *
18207341 TGCTGCCACAACCCTCAATCCAGTCTGGTCTTTGACTGGGAATGAACTTCATATGCCTAAGCTAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * *
18207406 CCGACGAAAAGAGTTGGCGGGCGGGC--G-GGCACTAC-CTCGACGAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGCACTACGC-CGGCCAGAGAGACGGGATGCGCAA
* * *
18207467 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCTCATCATCATATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
18207532 TTTTTATGGCTTGTAAATTCATACTATGGTCACTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
18207597 GACTCG----------TT-----TTTTG------TTT----TTCACGATTTTTTAAAATTTTTTC
260 GACTCGTTTTCTATTTTTCACGATTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
* * * * *
18207637 GGAAGGAATTTTGGCCTCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
18207702 AATTCAGCTAAAAACTCAAACTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTC
390 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTC
* * *
18207767 AGAGACATTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
18207832 TTCTTGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
18207897 CATATGCGCACA-CCCCCCGGCCCCCCGATCG-CTGAAACCCTAATGCCGCCGATCAGGTTCAT-
584 CATGTGCGCACACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTC-TC
* * * * * ** * * **
18207959 TGGTGATGCTCCGGTGATGGTGTCTCGGTGAAGAAAAATGCGGCACCAGCTCATGCCTAAGCCCA
647 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* ** * * *
18208024 GCATGTGCTGCCGTAACCCTCAATCCGATCCGATCTTAGACTGAGATTGAACTCCGTATGCTTAG
712 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
18208089 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCTGCC
777 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
18208154 AGAGAGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCATGCT-CCTGATCC
842 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCC-GATCC
* * * * *
18208214 TGTTGCCACAACCCTCTG-CTGGTCTGATCTTAGACTGGGAATGAGCTCCGTACGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * *
18208278 CTAACGAAACGAGCGGGCAGGCAGGCGGGCAGGCGGGGGGCATTACGTCGGGCAGAGAGACAGGA
66 CCGACGAAACGAGCGGGC--G--GGC--G--GGCGGGCGGCACTACGCCGGCCAGAGAGACGGGA
* * *
18208343 TGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCC
123 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
** *
18208408 AATGCCATTTTTATCACTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
188 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * **
18208473 GCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTGGCGGTTCAGGATTTTTTAAA
253 GCAAGACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTACGGTTCAGGATTTTTTAAA
** * * * *
18208538 ATTTTTTCGGAAGGCTTTTTAGCCCCAATCATGGTAGACGTGATCCTTGTATTTTTGTTGGCTTG
317 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
18208603 CACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
382 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
18208668 CCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGGG
447 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
18208732 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCAT
512 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
18208797 CGCACATCATGTGCACACACCCCCCCCGACCCCCCCGATCG-CAGAACCCCAATGGCGCCGGTCA
577 CGCACATCATGTGCGCACA-CCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * ** * *
18208861 GGTTCTCCGGCAATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATCCCC
640 GGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCC
* * ** *
18208926 GGGCCCAGCAAGTGCTGGTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
705 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* *
18208991 TGCTTAGACTGGG-ATGAACTCC-TATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCA
770 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *** * * *
18209054 GCCGGCCAGAGGGGCGGGATGCGCCAGCCGGGGATCGGTTGGGTCCCTCTCTACGTGCTGTCGAT
835 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGAT
18209119 CC
900 CC
* * ** ** *
18209121 TGCTGCCGCAACCCTCGATTTGAACCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18209186 CTGACGAAACGAACGGGTGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
18209251 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18209316 TTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
18209381 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GAGATTTTTTAAAATTTTT
260 GACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTT
* * * * *
18209445 TTGAAAAGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCTTGCACAAA
323 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18209510 AAAATTCAGCTAAAAACTCGAAGTCTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18209575 CAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTTAGATGCTCTTTAAGGGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
18209640 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACGCATCGTACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** ** * * * *
18209705 TCATGTGCGCACA-CCCCCTAGCCCCCTCGATCACCGAAACCCCAATTCCTCCGGTCAGGTTCTT
583 TCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
18209769 CGGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
647 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * ** * * *
18209834 GTATGTACTATCGGAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
712 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
*
18209899 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
777 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
18209964 AAAGGGGCGAGATGCGCAAGCCGGGGATCGACCGAGTCCACCTCTACATGCTGCCGATCC
842 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
18210024 TGCTACCGCAACCCTCGGTCTGATCCT-ATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18210087 ACCGACGAAACGA--------GC-GG-GTG-GGCACTATGCCGGCCAGAGAGACAGGATGCGCAA
65 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
18210141 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
18210206 -TTTTATGGCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
**
18210270 GACTCGTTTTCTATTTTTCACGATCTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACGAT-TTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* ** * * * *
18210335 CGAAAGGCTTTTTGGCCCCAAACTTGGTAGACGTGATCGTTGTATTTTTTTTAGCATGCAAAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18210400 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18210465 AGACATTTTAATGGCTACTGGGAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
18210530 TTTTTGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATTGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* **
18210595 CATGTGCGCACACCCCCGCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTTGGTCAGGTTCTC
584 CATGTGCGCACACCCCC-CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * ** *
18210660 TGGCGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCTCCAGCACATGCCCGAGCCCA
647 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* *
18210725 GCATGTGCTG-C-C-A--------------C-AACTTAGACTGGGAATGAACTCCATATGCTTAG
712 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
18210772 GCTAGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTAGCCAGCC
777 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * * *
18210837 GGAGGGGCGTGATGCACAAGCTGGGGATCGATCGGGTCACCCTCTGTGTGCTGTCGATCC
842 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
18210897 TGCTGCCGCAA--C-C-G-C-GGTCCGATCTTACACT-GGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18210955 CCGACAAAACGAGCGAGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGATACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
18211020 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * * *
18211085 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATGCCCATGAAGTTTCATGGCAAGTC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
18211150 GACTTGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCTGTTC-GAGATTGTTTCAAATTTTT
260 GACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTT
* * *
18211214 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAA
323 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18211279 ACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18211344 CAGACATTTTAATGGCTACTGGGAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
18211409 GTTCTTGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
18211474 TCATGTGCGCACACCTCCGCCAGCCCCCCGATCGTCAGAACCCCAATGTCGTCGGTCAGGTTCTC
583 TCATGTGCGCACACC-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
18211539 TGGCGATGCTCCGGTGATGGTGCCCTGACGAATAAAAATGTC-GCACCAGCACATGCCCGAGCCC
647 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT-ACGGCACCAGCACATGCCCGAGCCC
* *
18211603 AGCATGTGCTGCCGCAACCCTCGGTCCGGTACGATCTTAGACTGGGAATGAACTCCATATGCTTA
711 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
18211668 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGCGCGCTCAGCCAGT
776 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * *
18211733 CGGAGGGGCGGGATACGCAAGCTGGGGATCGGCCAGGTCCCCCTCTGTGTGCTGCCGATAC
841 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
18211794 GGCTGCAGCAACCCTTGGTCCGGTCTGATCTTACACT-GGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18211858 CCGACAAAATGAGCGGGCGGGCGGGC---AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
18211920 TCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
131 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * * *
18211985 TTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCATGCCCGTGAAGTTTCATGGCAAGTCG
196 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
18212050 ACTTGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GAGATTGTTTAAAATTTTTT
261 ACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTT
* * * *
18212114 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTCGTATTTTTGTTGACATGCAC-AAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
18212178 AAATTCAGCTAAAAACTTGAAGTGTGCAAGGTTTTGTGACCATTTGAAAAAAATGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18212243 ATACACTTTAATCGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
18212308 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18212373 CATGAGCGCACATCCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTC
584 CATGTGCGCACA-CCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** * * * *
18212438 CGACGATGCTCCGATGATGGTGCCCCGACGAA-AAAAAAAGTGGCACCAGCACATGCGCAAGCCC
647 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATA-CGGCACCAGCACATGCCCGAGCCC
* * **
18212502 AGCATGTGCTGCCGTAACCCTCGATCATGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
711 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* ** * *
18212567 GACTGGGAATGAACACCGTATGCCTAAGTCAACTAACAAAACGAGCGTGCGGGCGCTCAGCCGGT
776 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * **
18212632 C-GAGGGGCGGGATGCGTAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTTGATCC
841 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** *
18212692 TGCTACCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18212757 CTGACGAAACGA--------GCGGGC--G-GGCACTACTCCGGGCAGAGAGACGGGATGTGCAAG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
18212811 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTGCGTGCCAATGCCAT
131 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
18212876 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACG
196 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
18212941 ACTTGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTC
261 ACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
*
18213006 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCA-AAAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
18213070 ACACTCAGCTAAAAGCTCAAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
390 A-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
18213135 AGACGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTGTTTAAGGGGCTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
18213200 TTCTTGAGGTTTGATGAGGAATAGGGGGCCACTATAAGGGCCAAATACCAGCACCCATTGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
18213265 CATGTGCGCACACCCCCCCGGCCACCCCGATCGTCGGAACCCCAATGCCGCCGTTCAGGTTCT-C
584 CATGTGCGCACACCCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** * *
18213329 --CG--G-T-----GATGGTGCCCTGGTGAAGGAAAAT-GGGCACCAGCACATGCCCGAGCCCAG
648 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * *
18213383 CATGTGCTGCTGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
713 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
18213448 CTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTGTGGGCGCTCAGCCGGCCA
778 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * **
18213513 GAGGGGCGGGATGCGCAAGCCGGTGATTGATCGGGTCCCCCTCTATGTGCTGCCGATCC
843 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
18213572 TACTACCGTAACCCTCGGT-TCGGT-TCAATCTTAGACTGGGAATGAACTCCGTATGCCAAAACC
1 TGCTGCCGCAACCCTCGGTCT-GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
*
18213635 AACCGACGAAACGA--------GCGGGC--G-GGCACTACGCCGGCCAGAGACACGGGATGCGCA
64 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ** * *
18213689 AGCCGTGGATCGATAGAGTGGTAGGTGGGTTTATACACATGTTCACATTTC--CATGTGCCAATG
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA--TGCCAATG
* *
18213752 CCAATTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
192 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
18213817 GACGACTCGTTTTCTATTTTTCATGATTTTGGAAAGTTTTTACGGTTCGGGATTTTTTAAAATTT
257 GACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTACGGTTCAGGATTTTTTAAAATTT
* *
18213882 TTTCGGAAGG-GATTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTTTTGGCATGCAC
321 TTTCGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
18213946 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCA
385 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
18214011 TTTCAGACACTTTAAAGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTG
450 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
**
18214076 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGATCCAAGTACCAGCACCCATCGC
515 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
18214141 ACATCATGTGTGCACAACCCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
580 ACATCATGTGCGCAC-ACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * **
18214206 CTCCGGAGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGC
644 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
** * * * *
18214271 CCAGCATGTGCTGCCGCAATGCTCGGCCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCT
709 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
18214336 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGTGCGCTCAGCCG
774 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * * * *
18214401 GCCAGAGGGGCGGGATG-GCAAGCCAGGGATCGGTCGAGTCCCCCGT-TGCATGCTACCGATCT
839 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC-TCTGCGTGCTGCCGATCC
* * * * * *
18214463 TACTACCGTAACCCTCGGTCTGGT-TCGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18214527 ATCGACGAAACGAGCGGGCGGGCGGGC--G-GGAACTACGCCGGCCAGAGAGACGGGATTCGCAA
65 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
18214589 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
18214654 TTTTTATGGCTTGTAAATTAAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAT
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
18214719 GACTCGTTTTCTCTTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAATTTTT
260 GACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTT-ACGGTTCAGGATTTTTTAAAATTTTT
* * * *
18214783 TCGGAAGGATTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTTTTTTTTTTGGCATGCACAAA
323 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
18214848 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18214913 TAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
18214978 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18215043 TCATGTGCGCACA-CCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCT
583 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** * * *
18215107 GGCGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACAAGCTCGAGCCCAG
648 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* ** * *
18215172 CATGTACTATCGCAACCCTC-GTCCGGTGCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
713 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
18215236 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCA
778 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * *** ** * *
18215301 GACGAGCGAGATGCGCAAGTTAGGGATCGGTCGGGTGCCCCTCTGCGTGCTACCGATCC
843 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
**
18215360 TGCTGCCGCAACCCTCGGTCTCATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18215425 CCAACGAAAAGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCCCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
18215490 GCCATGGATCGAGAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18215555 TTTTTATGACTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
18215620 AACTCCTTTTCTATTTTTCATGATTTTTGAAACTTTTT-CGGTTC-GAGATTTTTTAAAATTTTT
260 GACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTT
* **
18215683 TCGGAA-GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGTGTGCACAAA
323 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18215747 AAAGTTCAGCCAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
18215812 CAGACACTTGAAT-GCTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTG
453 CAGACACTTTAATGGC-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18215876 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCAC
517 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* **
18215941 ATCATGTGCGCACA-CCCCCTGGCCCCCCGATCG-CTGGAACCCCAATGCCGTTGGTCAGGTTCT
582 ATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
18216004 CCGACGATGCTCCGGCGATGGTGCCTCGGCGAAGAAAAATGTC-GCACCAGCACATGCCCGGGCC
646 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT-ACGGCACCAGCACATGCCCGAGCC
* * * * * *
18216068 CAGCATGTGCTGCCGGAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCTT
710 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * *
18216133 AGAATGAGAATGAACTCCGTATCCCTAAGTCAACCCACAAAACAAGCGTACGGGCGCTCAGCCGG
775 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
*
18216198 CCAGAGGGGTGGGATGCGCAAGCCG
840 CCAGAGGGGCGGGATGCGCAAGCCG
18216223 AAAATTGGCC
Statistics
Matches: 11755, Mismatches: 1334, Indels: 515
0.86 0.10 0.04
Matches are distributed among these distances:
861 1 0.00
862 68 0.01
863 110 0.01
864 135 0.01
865 57 0.00
866 4 0.00
867 49 0.00
868 2 0.00
869 1 0.00
870 1 0.00
871 2 0.00
872 53 0.00
873 359 0.03
874 3 0.00
875 6 0.00
876 352 0.03
877 349 0.03
878 11 0.00
879 350 0.03
880 997 0.08
881 26 0.00
882 3 0.00
883 152 0.01
885 3 0.00
886 3 0.00
888 160 0.01
889 367 0.03
890 107 0.01
891 672 0.06
892 603 0.05
893 296 0.03
894 31 0.00
895 309 0.03
896 113 0.01
897 397 0.03
898 291 0.02
899 1368 0.12
900 165 0.01
901 957 0.08
902 776 0.07
903 1029 0.09
904 410 0.03
905 10 0.00
906 1 0.00
907 198 0.02
908 113 0.01
909 273 0.02
910 12 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:18205454 original size:26 final size:27
Alignment explanation
Indices: 18205418--18205475 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
18205408 CTGGCTCGAT
* *
18205418 CTTAGATTGGGAATGAACTTCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
18205444 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
18205471 CTTAG
1 CTTAG
18205476 TCAACCCACG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:18208087 original size:26 final size:26
Alignment explanation
Indices: 18208058--18208110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18208048 CCGATCCGAT
*
18208058 CTTAGACTGAGATTGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
18208084 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18208110 C
1 C
18208111 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18208996 original size:26 final size:24
Alignment explanation
Indices: 18208967--18209017 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 24
18208957 CCGGTCTGAT
18208967 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCC-TATG
18208993 CTTAGACTGGGATGAACTCCTATG
1 CTTAGACTGGGATGAACTCCTATG
18209017 C
1 C
18209018 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 5 0.20
25 9 0.36
26 11 0.44
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (24 bp):
CTTAGACTGGGATGAACTCCTATG
Found at i:18209904 original size:26 final size:26
Alignment explanation
Indices: 18209868--18209920 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18209858 CCGGTCCGAT
*
18209868 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18209894 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18209920 C
1 C
18209921 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18210779 original size:26 final size:26
Alignment explanation
Indices: 18210741--18210793 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18210731 GCTGCCACAA
* *
18210741 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATCAACTCCATATG
* *
18210767 CTTAGGCTAGGAATCAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCATATG
18210793 C
1 C
18210794 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCATATG
Found at i:18211674 original size:26 final size:26
Alignment explanation
Indices: 18211638--18211690 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18211628 CCGGTACGAT
18211638 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18211664 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18211690 C
1 C
18211691 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18212566 original size:26 final size:26
Alignment explanation
Indices: 18212537--18212589 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18212527 CATGTCCGAT
*
18212537 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
18212563 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
18212589 C
1 C
18212590 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:18213445 original size:26 final size:26
Alignment explanation
Indices: 18213416--18213468 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18213406 CCGATCCGAT
18213416 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18213442 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18213468 C
1 C
18213469 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18214344 original size:26 final size:26
Alignment explanation
Indices: 18214308--18214360 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18214298 CCGATCTGAT
18214308 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18214334 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18214360 C
1 C
18214361 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18215242 original size:26 final size:26
Alignment explanation
Indices: 18215204--18215256 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18215194 CCGGTGCGAT
*
18215204 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18215230 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18215256 C
1 C
18215257 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18216528 original size:312 final size:311
Alignment explanation
Indices: 18215932--18216534 Score: 834
Period size: 312 Copynumber: 1.9 Consensus size: 311
18215922 GTACCAGCAC
* * * *
18215932 CCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGCTGGAACCCCAATGCCGTTGGTC
1 CCATCACACATCATGTGCGCACACCCCCTGCCCCCCCGATCGCTGGAACCCCAATGCCATCGGTC
* * * *
18215997 AGGTTCTCCGACGATGCTCCGGCGATGGTGCCTCGGCGAAGAAAAATGTCGCACCAGCACATGCC
66 AGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATCGCACCAACACATGCC
* * * *
18216062 CGGGCCCAGCATGTGCTGCCGGAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCAT
131 CGGGCCCAGCATGTGCTGCCGGAACCCTCGATCCGATCCGATCTCAGACTGGGAATGAACTCCAC
*
18216127 ATGCTTAGAATGAGAATGAACTCCGTATCCCTAAGTCAACCCACAAAACAAGCGTACGGGCGCTC
196 ATGCTTAGAATGAGAATGAACTCCGTATCCCTAAGTCAACCCACAAAACAAGCGTACGAGCGCTC
* *
18216192 AGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAAAATTGGCCGGGTCCCCTT
261 AGCCAGCCAGAGGGGCGGGATGCGCAAGCCGAAAATTGGCCGGGTCCCCTT
* *
18216243 CCATCACACATCA-GTGCGTACAGCCCCCTAGCCCCCCCGATCG-TCGGAACCCCAATGTCATCG
1 CCATCACACATCATGTGCGCACA-CCCCCT-GCCCCCCCGATCGCT-GGAACCCCAATGCCATCG
* * * *
18216306 GTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATATGGCACCAACGCAT
63 GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATCGCACCAACACAT
* * *
18216371 GCCCGGGCCCAGCATGTGCTGCTGTAACCCTC-AGTCCGGTCCGATCTCAGACTGGGAATGAACT
128 GCCCGGGCCCAGCATGTGCTGCCGGAACCCTCGA-TCCGATCCGATCTCAGACTGGGAATGAACT
* * * * ** ** *
18216435 CCACATGCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGC
192 CCACATGCTTAGAATGAGAATGAACTCCGTATCCCTAAGTCAACCCACAAAACAAGCGTACGAGC
* *
18216500 GCTTAGCTAGCCAGAGGGGCGGGATGCGCAAGCCG
257 GCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCG
18216535 GGGATCGGTC
Statistics
Matches: 253, Mismatches: 35, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
310 8 0.03
311 20 0.08
312 225 0.89
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (311 bp):
CCATCACACATCATGTGCGCACACCCCCTGCCCCCCCGATCGCTGGAACCCCAATGCCATCGGTC
AGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATCGCACCAACACATGCC
CGGGCCCAGCATGTGCTGCCGGAACCCTCGATCCGATCCGATCTCAGACTGGGAATGAACTCCAC
ATGCTTAGAATGAGAATGAACTCCGTATCCCTAAGTCAACCCACAAAACAAGCGTACGAGCGCTC
AGCCAGCCAGAGGGGCGGGATGCGCAAGCCGAAAATTGGCCGGGTCCCCTT
Found at i:18217346 original size:26 final size:26
Alignment explanation
Indices: 18217310--18217362 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18217300 TCGGTCTGAT
* *
18217310 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGAATGGGAATAAACTCCGCATG
*
18217336 CTTAGAATGGGAATAAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGCATG
18217362 C
1 C
18217363 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAATAAACTCCGCATG
Found at i:18218242 original size:26 final size:26
Alignment explanation
Indices: 18218213--18218265 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18218203 CTGATCCGAT
18218213 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
18218239 CTTAGACTGGGAATGTACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18218265 C
1 C
18218266 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18219084 original size:904 final size:902
Alignment explanation
Indices: 18216243--18219337 Score: 4260
Period size: 903 Copynumber: 3.4 Consensus size: 902
18216233 GGGTCCCCTT
* * **
18216243 CCATCACACATCA-GTGCGTACAGCCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGTCATCGG
1 CCATCACACATCATGTGCGCACA-CCCCCCAG-CCCCCCGATCGTCGGAACCCCAATGTCGCCGG
** * *
18216307 TCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATATGGCACCAACGCATG
64 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATG
* * * * *
18216372 CCCGGGCCCAGCATGTGCTGCTGTAACCCTCAGTCCGGTCCGATCTCAGACTGGGAATGAACTCC
129 CCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
18216437 ACATGCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGC
194 GCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGC
* * * *
18216502 TTAGCTAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
259 TCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCC
* * *
18216567 AATCCTGCTGCTGCAACCCTCAG-TCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTA
324 GATCCTACTGCTGCAACCCTCAGTTCTGATCTGATCTTAGACTAGGAATGAACTCCATATGCCTA
* * *
18216631 AGCCAACCGATGAAATA--A-GCAGGCGGGCGGGCA---CA--ACGTCGGCCAGAGAGACGGGAT
389 AGCCAACCGACGAAATAGCAGGCAGGCGGGCGGGCAGGGCACTACGACGGCCAGAGAGACAGGAT
* * *
18216688 GCGCAAGTCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTGCGTGCCA
454 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTACGTGCCA
* * * *
18216753 ATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTCAGTCTTCACGTTAAGTTTCATGG
519 ATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
18216818 CAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCAGGATTTTTTAAAA
584 CAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAA
* * * *
18216883 TTTTTTCAGAAGGATTTTTTGCCCCAAACTTGGTAGACACGATCCTTGAATTTTTCTTGGCATGC
649 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGC
* *
18216948 ACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCC
714 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
18217013 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGCTTAAGGGGG
779 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-CTTAAGGGGG
* * *
18217078 TGTGAGTTATAAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
843 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCAC
* * *
18217138 CCATCACACATCATGTGCGCACACCCCCTAGCCCCCCGATCGTCGGAACCCTAATGTCGTCGGTC
1 CCATCACACATCATGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTC
* * *
18217203 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAGAAATGTGGCACCAGCACATGCC
66 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGCC
* * * * *
18217268 CGAGCCCAGCATGTGCTATCGTAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGC
131 CGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGC
* * * * *
18217333 ATGCTTAGAATGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGTGCTC
196 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTC
* * *
18217398 AGCCAGCCAGAGGGGCGGGATGCGAAAGCCGGGGCTTGGCCGGGTCCCCCTCTACGTGCTGCCGA
261 AGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGA
* * * * *
18217463 TCCTGCTGCTGCAACCCTCA-ATCTGGTCTAATCTTAGACT-GGTAATGAACTCCATGTGCCTAA
326 TCCTACTGCTGCAACCCTCAGTTCTGATCTGATCTTAGACTAGG-AATGAACTCCATATGCCTAA
* * * * *
18217526 GCCAACCGACGAAGTAAGCAGACAGGCGGGCGGGC-GGGCACTATGCCGGCCAGAGAGACCGGAT
390 GCCAACCGACGAAAT-AGCAGGCAGGCGGGCGGGCAGGGCACTACGACGGCCAGAGAGACAGGAT
18217590 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTACGTGCCA
454 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTACGTGCCA
*
18217655 ATGCCATTTTAATGGCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
519 ATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
18217720 CAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACCGTT-GGAGATTTTTTAAA
584 CAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGG-GATTTTTTAAA
* * *
18217784 ATTTTTTC-GAAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCA
648 ATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTCTTGGCA
* * *
18217848 AGCACAGAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
711 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
18217913 CCCCATTTCAGACACTTTAAAGGCTACTGGTAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGG
776 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGG
*
18217978 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCAC
840 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCAC
* * * * * * **
18218041 CCATCGCACGTCATGTGAGCACACCCCCCGGCCCCCCGATCGCCAGAACCTTAATGTCGCCGGTC
1 CCATCACACATCATGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTC
* * * *
18218106 AAGTTCTCCGGCGATGGTCCGACGATGGTGCCCC-ATCGAAGAAAAATACGGCACCAGCACATGC
66 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAT-GAAGAAAAATATGGCACCAGCACATGC
* * * * * * *
18218170 TCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCG
130 CCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * *
18218235 TATGCTTAGACTGGGAATGTACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCT
195 CATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCT
* * * ** * * *
18218300 CAGCCGGTCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCACTGCGTGCTGCTG
260 CAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCG
* * *
18218365 ATCCTACTGCTGCAA-CCT-ATGGTTC-GGTTTGATCTTAGACTAGGAATGAACTCCGTATGCCT
325 ATCCTACTGCTGCAACCCTCA--GTTCTGATCTGATCTTAGACTAGGAATGAACTCCATATGCCT
* *
18218427 AAGCCAACCGACGAAATGAGCAGGCGGGCGGGCGGGCAGGGCACTACGACGGTCAGAGAGACAGG
388 AAGCCAACCGACGAAAT-AGCAGGCAGGCGGGCGGGCAGGGCACTACGACGGCCAGAGAGACAGG
* * * * * * *
18218492 ACGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGCTTTAGGTACATCTTCACATTTCTTCGTGC
452 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTACGTGC
* * *
18218557 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTTACGTGAAGTTTCAT
517 CAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* **
18218622 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTGCGGTTCGGGATTTTTCT-
582 GGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTT-TA
* * * *
18218685 AAATTTTTTCAGAAGGAGATTTGGCCCCAAACTCGGTAGACATGATCCCTT-TCTTTTTGTTGGC
646 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT-CCTTGTATTTTTCTTGGC
* * ** * *
18218749 ATGCAAAAAAAAATTCATCTTCAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTG
710 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
18218814 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAG
775 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-AAG
* * * *
18218879 GGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGAGCCAATATAAGCGCCAAGTCCCAGCAC
839 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCAC
* * *
18218943 CCATCGCACATCATGTGCGCACACCCCACCGGCCCCCCCGATCGTCGGATCCCCAATGTCGCCGG
1 CCATCACACATCATGTGCGCACACCCC-CCAG-CCCCCCGATCGTCGGAACCCCAATGTCGCCGG
* * * *
18219008 TCAGGTTCTTCGACGATGCTCTGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATG
64 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATG
* * * *
18219073 CTCGAGCCCAGCATGTGCTACCGCAACCCTC-GATCCGGTCTGATCTTAAACTGGGAATGACCTC
129 CCCGAGCCCAGCATGTGCTACCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTC
* * *
18219137 CGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
193 CGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCG
** * * *
18219202 CTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCTGGAGATCGGCCGGTTCCCCCTCTACGTGCTGC
258 CTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGC
* * * *
18219267 CGATCCTACTG-TCGTAACCCTCAG-TCCGATTTGATCTTAGACTAGGAATGAACTCCGTATGCC
323 CGATCCTACTGCT-GCAACCCTCAGTTCTGATCTGATCTTAGACTAGGAATGAACTCCATATGCC
18219330 TAAGCCAA
387 TAAGCCAA
18219338 ACTTGGTAGA
Statistics
Matches: 1953, Mismatches: 212, Indels: 61
0.88 0.10 0.03
Matches are distributed among these distances:
893 2 0.00
894 333 0.17
895 22 0.01
896 8 0.00
897 1 0.00
898 13 0.01
900 2 0.00
901 5 0.00
902 457 0.23
903 603 0.31
904 502 0.26
905 4 0.00
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (902 bp):
CCATCACACATCATGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTC
AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGCC
CGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGC
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTC
AGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGA
TCCTACTGCTGCAACCCTCAGTTCTGATCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAG
CCAACCGACGAAATAGCAGGCAGGCGGGCGGGCAGGGCACTACGACGGCCAGAGAGACAGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTACGTGCCAAT
GCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
AGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCAC
AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTAAGGGGGTGT
GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCAC
Found at i:18219146 original size:26 final size:26
Alignment explanation
Indices: 18219117--18219169 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18219107 CCGGTCTGAT
*
18219117 CTTAAACTGGGAATGACCTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
18219143 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18219169 C
1 C
18219170 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18220647 original size:26 final size:26
Alignment explanation
Indices: 18220618--18220669 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18220608 TGGTCTGATA
*
18220618 TTAGACTGGGAATGAAC-TCTGTATGC
1 TTAGACTGAGAATGAACTTC-GTATGC
18220644 TTAGACTGAGAATGAACTTCGTATGC
1 TTAGACTGAGAATGAACTTCGTATGC
18220670 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTTCGTATGC
Found at i:18221148 original size:889 final size:885
Alignment explanation
Indices: 18219334--18221544 Score: 2898
Period size: 889 Copynumber: 2.5 Consensus size: 885
18219324 TATGCCTAAG
* * *
18219334 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAACTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
18219399 CGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTA
*
18219464 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGA
130 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
18219529 GGGATAGGGGGTCAATATAAGGGCCAAGTACCAGGACCCATCGCACATCATGTACGCACACCCTC
195 GGGATAGGGGGCCAATATAA-GG---AGT------ACCCATCGCACATCATGTGCGCACACCC-C
* ** * **
18219594 CCCGGACCGCCAATCGTCGGAACCCTAATGCCACCGGTCAGGTTCT-C--CGA---T--GATGGT
249 CCAGCCCCCCCAATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCGGATGGT
* * *
18219651 GTCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGTTGCCGCAACCCTC
314 GACCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTC
** * *
18219716 GAT-TCGGT-TCGATCGATATATTCTGGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCC
379 GATCT-GGTCT-GAT--AT-TAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCC
* * * * *
18219779 GTATGCCTAAGTCAACCCATGAAATGAGCGTGTAGGCGCTCAGCTGGCCAGAGGGGTGGGATGAG
439 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGAG
* * * * ** *
18219844 CAAGCCGAGGATAGCTCGGGTCTACCTCTGCATGCTGTCGATCCTGCTGTCCCAACCCTCGGTCC
504 CAAGCCGAGGATAGCTCAGATCCACCTCTGCATGCTGTCGATCCTACTCACCCAACCCTCAGTCC
* * *
18219909 GGTCTGATCTTAGATTGGGAATGAACTCTGTATCCCTAAGCCAACCGACAAAACGAGCGGCCGGG
569 GGTCTGATCTTAGACTGGAAATGAACTCCGTATCCCTAAGCCAACCGACAAAACGAGCGGCCGGG
* * * * *
18219974 CGGCCGGGTACTACGTCGGCCAGAAAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
634 CGGCCGGGCACTACGCCGGCCAGAAAGACGAGATGCGCAAGCCATAGATCAATAGGGTGGTAGGT
**
18220039 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
699 GGGTTTAGGCACATCTTCATATTTCAACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * *
18220104 ATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTCATGATT
764 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGACT
* *
18220169 TTTAAAACTTTTTACAGTTCGAGATTTTTTTAAATTTTTTTCGAAAGAGTTTTGGCC
829 TTTAAAACTTTTTACAGTTCGAGATTTTTGTAAAATTTTTTCGAAAGAGTTTTGGCC
* ** * *
18220226 CCAAAATTGGTAGTTGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTGAGCTAAAAAGT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
18220291 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACGCTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CCATTTCAGACACTTTAATGGCTA
* * * *
18220356 CTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATTA
130 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
18220421 GGGATAGGGGGCCAATATAA-G-GT-CCCATCGTACATCATGTGCGCACA-CCCCCAGCCCCCCC
195 GGGATAGGGGGCCAATATAAGGAGTACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCC
* * *
18220482 GATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGACGGTGACCCGAT
260 AATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCT-CG--GATGGTGACCCGAC
* * *
18220547 GAAGAAAAATGCGACACCAGCAAATGCCTGAGCCTAGCATGTGCTGCCGCAACCCTCGATCTGGT
322 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGATCTGGT
* *
18220612 CTGATATTAGACTGGGAATGAACTCTGTATGCTTAGACTGAGAATGAACTTCGTATGCCTAAGTC
387 CTGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTC
* * * *
18220677 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATC
452 AACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATA
* * *
18220742 GAC-CAGATCCCCCTCTGCATGCTGTCGATCCTAC-CACCATAACCCTCAGTCTGGTCTGATCTT
517 G-CTCAGATCCACCTCTGCATGCTGTCGATCCTACTCACC-CAACCCTCAGTCCGGTCTGATCTT
* * * * * * *
18220805 AGACTGGAAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGTGCGGGCGGGTAGGGGGGCGG
580 AGACTGGAAATGAACTCCGTATCCCTAAGCCAACCGACAAAACGAGC-GGC-CG--GGCGGCCGG
* *
18220870 GCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCATAGATTAATAGGGTGGTAGGTGGGTTTA
641 GCACTACGCCGGCCAGAAAGACGAGATGCGCAAGCCATAGATCAATAGGGTGGTAGGTGGGTTTA
* *
18220935 GGCACATCTTCATATTTCAACATGCCAATGCCATTTTTGTGGCTTTTAAATTCATACAATGGTCC
706 GGCACATCTTCATATTTCAACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
18221000 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGACTTTTGAAA
771 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGACTTTTAAAA
* * *
18221065 CTTTTTACGGTTCGGGA-TTTTGTAAAATTTTTTCGGAAG-GCATTTTGG-C
836 CTTTTTACAGTTCGAGATTTTTGTAAAATTTTTTCGAAAGAG--TTTTGGCC
18221114 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
18221179 CGAAGTGTACAAGATTTTGTGACCA-TTGAAAAAAGTGTTCCGATTTCAGACACTTCGAA-GGCT
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-TCCCATTTCAGACACTT-TAATGGCT
*
18221242 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
129 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
18221307 AGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCC
194 AGGGATAGGGGGCCAATATAA-GG---AGT------ACCCATCGCACATCATGTGCGCACACCCC
* * * * *
18221372 CCGGCCCCCCCAATCGCCGAAACCCTAATGCCGTCGGTCTGGTTCTCCGGCAATGCTTCGGTGAT
249 CCAGCCCCCCCAATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGC-TC-G-GAT
* * * *
18221437 GGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACC
311 GGTGACCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACC
* * ** *
18221502 CTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
376 CTCGATCTGGTCTGATATTAGACTGGGAATGAACTCCGTATGC
18221545 CTAAGCCAAC
Statistics
Matches: 1151, Mismatches: 128, Indels: 71
0.85 0.09 0.05
Matches are distributed among these distances:
877 40 0.03
878 3 0.00
879 22 0.02
880 3 0.00
883 1 0.00
884 2 0.00
885 196 0.17
886 8 0.01
887 111 0.10
888 181 0.16
889 209 0.18
890 1 0.00
891 1 0.00
892 197 0.17
893 2 0.00
900 22 0.02
901 150 0.13
902 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGAGTACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCA
ATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCGGATGGTGACCCGACGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGATCTGGTCTGA
TATTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATAGCTC
AGATCCACCTCTGCATGCTGTCGATCCTACTCACCCAACCCTCAGTCCGGTCTGATCTTAGACTG
GAAATGAACTCCGTATCCCTAAGCCAACCGACAAAACGAGCGGCCGGGCGGCCGGGCACTACGCC
GGCCAGAAAGACGAGATGCGCAAGCCATAGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCAACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGACTTTTAAAACTTTTTACAG
TTCGAGATTTTTGTAAAATTTTTTCGAAAGAGTTTTGGCC
Found at i:18222798 original size:717 final size:714
Alignment explanation
Indices: 18220794--18222970 Score: 3316
Period size: 717 Copynumber: 3.0 Consensus size: 714
18220784 CCCTCAGTCT
* * * * *
18220794 GGTCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGTGCGGGCGGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGC-GG
* * * * **
18220859 TA-GGG-GGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCATAGATTAATAGGGTG
65 -ACGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * ** * *
18220922 GTAGGTGGGTTTAGGCACATCTTCATATTTCAACATGCCAATGCCATTTTTGTGGCTTTTAAATT
129 GTAGGAGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
18220987 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
194 CATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * **
18221052 ACGACTTTTGAAACTTTTTACGGTTCGGGATTTTGTAAAATTTTTTCGGAAGGCATTTTGG-CCC
259 ATGA-TTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCC
*
18221116 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
323 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCG
* * * * * * *
18221181 AAGTGTACAAGATTTTGTGACCA-TTGAAAAAAGTGTTCCGATTTCAGACACTTCGAA-GGCTAC
388 AAGTGTACAAGATTTTGTGACAATTTGAAAAAGGTGTCCCCATTCCAGACACTT-TAATGGCCAC
*
18221244 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
452 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
18221309 TGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCC
517 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCAC-CCCCCC
* * * * *
18221374 GGCCCCCCCAATCGCCGAAAC-CCTAATGCCGTCGGTCTGGTTCTCCGGCAATGCTTCGGTGATG
581 GGCCCCCCGAATCGCCG-AACTCC-AATGCCGTCGGTCAGGTTCTCCGACGATGC-TCCGTGATG
18221438 GTGCCCCGAC-AAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACC
643 GTGCCCCGACGAAA-AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACC
*
18221502 CTCGGTCC
707 CTCGATCC
*
18221510 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGA-----C---
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGA
*
18221567 CGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGT
66 CGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
18221632 AGGAGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCCATTTTTAGGGCTTGTAAATTCA
131 AGGAGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
18221697 TACAGTGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
196 TACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
**
18221762 GATTTTTAAAACTTTTTTTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAA
261 GA-TTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAA
*
18221827 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG-AAAAAAAAATTCAGCTAAAAATTCGAA
325 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAA
18221891 GTGTACAAGATTTTGTGACAATTTGAAAAAGGTGTCCCCATTCCAGACACTTTAATGGCCACTGG
390 GTGTACAAGATTTTGTGACAATTTGAAAAAGGTGTCCCCATTCCAGACACTTTAATGGCCACTGG
* *
18221956 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAAGTTTGATGAGGGA
455 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
18222021 TA-GGCGCCGAATATAAGGGCCAAGTACCAGCACCCATTACACATCATGTGCGCACACCCCCCCG
520 TAGGGGGCC-AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCG--CACCCCCCCG
* * * *
18222085 GCCCCCCGAAT-GCCAGAACTCCAATGTCGGCGGTCAGGTTCTCTGACGATGCTCCGACGATGGT
582 GCCCCCCGAATCGCC-GAACTCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG-TGATGGT
* *
18222149 GCCCCGACGAAAAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTC
645 GCCCCGACGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTC
18222214 GATCC
710 GATCC
*
18222219 GGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGA
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGA
* * * *
18222284 CGGGCGGGCGGGCATTACGTCGATCAGACAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
66 CGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
18222349 AGGAGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCA
131 AGGAGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
18222414 TACAATTGTCCTTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTAAT
196 TACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* *
18222479 GATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGATGTTTTGGCCCCAA
261 GATTTT-AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAA
*
18222544 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGA
325 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-AAAAAAAAATTCAGCTAAAAACTCGA
*
18222609 AGTGTACAAGATTTTGTGACAATTTGAAAAAGGTGTCCCCATTCCAGACACTTTAATAGCCACTG
389 AGTGTACAAGATTTTGTGACAATTTGAAAAAGGTGTCCCCATTCCAGACACTTTAATGGCCACTG
*
18222674 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGGG
454 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
18222739 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACCCCCTC-GC
519 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACCCCCCCGGC
18222803 CCCCTCG-ATCGCCGGAACTCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTGTGATGGTG
584 CCCC-CGAATCGCC-GAACTCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GTGATGGTG
* * *
18222867 CCCCTG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
646 CCCC-GACGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTC
18222931 GATCC
710 GATCC
*
18222936 GGTCCGATCTTAGACTGGGAATGAACTCCATATGC
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18222971 TTAGACTGGG
Statistics
Matches: 1335, Mismatches: 98, Indels: 55
0.90 0.07 0.04
Matches are distributed among these distances:
707 3 0.00
708 278 0.21
709 334 0.25
710 23 0.02
711 4 0.00
714 1 0.00
716 62 0.05
717 427 0.32
718 2 0.00
719 196 0.15
720 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (714 bp):
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGA
CGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGAGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
GATTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACAATTTGAAAAAGGTGTCCCCATTCCAGACACTTTAATGGCCACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACCCCCCCGGCCC
CCCGAATCGCCGAACTCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGTGATGGTGCCCCG
ACGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCC
Found at i:18222980 original size:26 final size:26
Alignment explanation
Indices: 18222944--18222996 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18222934 CCGGTCCGAT
18222944 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18222970 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18222996 C
1 C
18222997 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18224070 original size:885 final size:888
Alignment explanation
Indices: 18222206--18224871 Score: 3445
Period size: 885 Copynumber: 3.0 Consensus size: 888
18222196 TGTGCTGCCA
* * *
18222206 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
1 CAACCTTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18222271 A-AGA-GCGGGCGGACGGGCGGGCGGGCATTACGTC-GATCAGACAGACGGGATGCGCAAGCCGT
66 AGAGAGGCGGGCGGACGGGCGGGTGGGCACTACGTCGGCT-AGAGAGACGGGATGCGCAAGCCGT
* *
18222333 GGATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCCATTTTT
130 GGATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* * * *
18222398 ATGGCTTGCAAATTCATACAATTGTCCTTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTC
195 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
18222463 GTTTTCTTTTTTTAATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAA
260 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTGGAA
* *
18222528 -GATGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAA
324 GGAT-TTTTGG-CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAA
* *
18222592 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAGGTGTCCCCATTCCAGA
386 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18222657 CACTTTAATAGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTC
451 CACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
18222722 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCAT
516 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
18222787 GTGCGCACCCCCTCGCCCCCTCGATCGCCGGAACTCCAATGCCGTCGGTCAGGTTCTCCGACGAT
581 GTGCGCA------CACCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-AC-A-
* ** *
18222852 GCTCCTGTGATGGTGCCCCTGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
637 G---C-GTGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
18222917 CTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGA
698 CTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGA
* * * *
18222982 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGCGTGGGCGTTCAGCCGACCAGAGGGG
763 ATGAACTCCGTAAGCCTAAGTCAACCCACAAAACGAGCGCGCGGGCGCTCAACCGACCAGAGGGG
* * * * *
18223047 CGGGATGCGCAAGCCGTGGATGGACCGGGTCCCCCTCTGCGTGCTATCGATCCTACTGCCT
828 CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCCTACTACCG
* *
18223108 CAACCTTCGATCCGATCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAA
1 CAACCTTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
18223173 ACGAGCAGGCGGGCGGACGGGCGGGTGGGCACTACGTCGGCTAGAGAGATGGCATGCACAAGCC-
66 A-GAG-AGGCGGGCGGACGGGCGGGTGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCG
* * *
18223237 TGGATCGATAGAGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCGATTTT
129 TGGATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
18223302 TATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
194 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
18223367 CGTTTTCTATTTCTCACGATTTTCGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTGGAA
259 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAA
*
18223432 GGATTTTTGGTCCCAAATTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
324 GGATTTTTGG-CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
18223497 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACA
388 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * * * *
18223562 GTTTAATTGCTACTGGTAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTTTT
453 CTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
18223627 GAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
518 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
*
18223692 GCGCACACCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C-C-G-GTGATGGTG
583 GCGCACACCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCACAGCGTGATGGTG
* *
18223752 CCCCGGCAAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCGTGTGCTGCCACAACCCTCG
648 CCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCG
* * * *
18223817 GTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTAAGC
713 ATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAAGC
* **** * * * *
18223882 CTAAGTTAACCTGTGAAACGAGCGTGCGGGCGCTCAACTGACCAGAGGGGCGGGATGCGTAAGTC
778 CTAAGTCAACCCACAAAACGAGCGCGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCC
* * *
18223947 GGGGATCGACCGGGTCCCCCTCTATGTGCTGTCGATCCTGCTACCG
843 GGGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCCTACTACCG
* * *
18223993 CAACCCTT-GGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 CAA-CCTTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
18224057 AATGAGTAGGC--G-GG-CGGGCGGGT----ACTACGCCGGCCAGAGAGACGGGATACGCAAGCC
65 AA-GAG-AGGCGGGCGGACGGGCGGGTGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCC
* * *
18224114 GTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTC-TGCCAATGCCATT
128 GTGGATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCCATT
*
18224178 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
192 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
18224243 CTCATTTTCTGTTTTTCACGATTTTCAAAACTTTTTACGGTTCCGGATTTTTTAAAATTTTTTCG
257 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-G
* *
18224308 GAAGGAGTTTTGGCCCTAAACTTGGTAGACATGATCCTTGAATTTTTGTTGGCATGCACAAAAAA
321 GAAGGATTTTTGGCCC-AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
18224373 ATTCAGCAAAAAACTCAAAGTGTTCAAGATTTTGTGACCATTT-AAAAAAGGTGTCCCCATTTCA
385 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAA-GTGTCCCCATTTCA
* * *
18224437 GACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGT
449 GACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18224502 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
514 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
18224567 ATGTGCGTACACACCCTCCCCCGGCCCCCCAATCGCTGGAACCCCAATGCCGTCGGTCAGGTTTT
579 ATGTGCG--CACA-CC-CCCTC-G-------ATCGCCGGAACCCCAATGCCGTCGGTCA-G----
* * * *
18224632 CTGATGATGCTCCAGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAAT-GGGCACCAGCACA
627 --G-T--T-CTCCA-C-A-G---C-GTGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACA
* * ** * * *
18224696 TGCCCGACCCCAGGATGTGCTGCCGTAACCCTCGGTTCAGT-CGATCTTAGACTGGGAATGAACT
679 TGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * * * *
18224760 CCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAA-GAGCGGGCGGG
744 CCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCAC-AAAACGAGCGCGCGGG
* * * * *
18224824 CGGGCATTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
808 C--GC-TCA-ACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
18224872 TAGGGTGGTA
Statistics
Matches: 1556, Mismatches: 156, Indels: 90
0.86 0.09 0.05
Matches are distributed among these distances:
877 28 0.02
878 184 0.12
879 240 0.15
881 13 0.01
882 4 0.00
883 4 0.00
884 1 0.00
885 282 0.18
886 4 0.00
890 1 0.00
892 26 0.02
893 2 0.00
895 1 0.00
896 34 0.02
897 6 0.00
899 1 0.00
900 1 0.00
902 62 0.04
903 200 0.13
904 60 0.04
905 171 0.11
906 47 0.03
907 2 0.00
909 1 0.00
912 75 0.05
913 48 0.03
914 25 0.02
915 2 0.00
916 31 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (888 bp):
CAACCTTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
AGAGAGGCGGGCGGACGGGCGGGTGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAGG
ATTTTTGGCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCACAGCGTGATGGTGCCC
CGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATC
CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAAGCCTA
AGTCAACCCACAAAACGAGCGCGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGG
GATCGACCGGGTCCCCCTCTACGTGCTATCGATCCTACTACCG
Found at i:18224653 original size:11 final size:11
Alignment explanation
Indices: 18224637--18224662 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
18224627 GTTTTCTGAT
18224637 GATGCTCCAGC
1 GATGCTCCAGC
18224648 GATGCTCCAGC
1 GATGCTCCAGC
18224659 GATG
1 GATG
18224663 GTGCCCCGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
GATGCTCCAGC
Found at i:18224779 original size:26 final size:26
Alignment explanation
Indices: 18224741--18224793 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18224731 TTCAGTCGAT
*
18224741 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18224767 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18224793 C
1 C
18224794 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18225513 original size:26 final size:26
Alignment explanation
Indices: 18225477--18225529 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18225467 CCAGTCTGAT
*
18225477 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18225503 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18225529 C
1 C
18225530 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18227033 original size:719 final size:717
Alignment explanation
Indices: 18225658--18227124 Score: 2404
Period size: 719 Copynumber: 2.0 Consensus size: 717
18225648 CGGTCTGGTT
* * * * * *
18225658 CGATCTTCGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCCGACGGG
1 CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGG
* * *
18225723 CCGGCGGGCACTACGCCGGCTAGAGAGACGGTATGCGCAAGCCATGTATCGATAGGGTGGTAGGT
66 CCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
*
18225788 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
18225853 ATGTTCCCTTAAGCCTTCACGTGAAATTTCAAGGCAAGACAACTCGTTTTCTATTTTTCACGATT
196 ATGTTCCCTTAAGCCTTCACGTGAAATTTCAAGGCAAGACAACTCATTTTCTATTTTTCACGATT
*
18225918 TTTGAAACTTTTTGCAGTTCAGGATTTTTTAAAAGTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
261 TTTGAAACTTTTTACAGTTCAGGATTTTTTAAAAGTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* * * *
18225983 GGTGGATAGGATCCTTTTATTTTTGTTGGCATGCACCAAAGAATTCAGCAAAACTCTCGAAGTGA
326 GGTAGATAGGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAATCTCGAAGTGA
*
18226048 ACAAGATTTTGTGACCATTTGGAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
391 ACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
18226113 AAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGC
456 AAACCTATAAAATCTCAAACGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGC
* *
18226178 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCCGGCCCCT
521 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * * *
18226243 CGATCGTCGGAACCCCAATGCAGTCAATCAGGTTCTTTGGCGATGCTCTAGCGATGGTGCCCCGG
586 CGATCGTCGGAACCCCAATACAGTCAATCAGGTTCTTCGACGATGCTCCAGCGATGGTGCCCCGA
*
18226308 TGAAGAAAAATACGACACCAGCAAATG-CCTGAGCCCAGCATGTGCTGCCGCAACCTTCAGTCCA
651 TGAAGAAAAATACGACACCAGCAAATGACC-GAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCA
18226372 GTC
715 GTC
**
18226375 CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGTGGG
1 CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGG
* * *
18226440 CGGGCGGGCACTACGCCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
66 CCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
18226505 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
18226570 ATGTTCCCTTAAG-CTTCAC-TGAAATTTTACAGGCAAGACAACTCATTTTCTATTTTTCACGAT
196 ATGTTCCCTTAAGCCTTCACGTGAAATTTCA-AGGCAAGACAACTCATTTTCTATTTTTCACGA-
* *
18226633 TTTTTGAAAACTTTTTACAGTT-TGAGATTTTTTAAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
259 TTTTTG-AAACTTTTTACAGTTCAG-GATTTTTT-AAAAGTTTTTCGAAAGGAGTTTTGGCCCCA
18226697 AACTTGGTAGATAGGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAATCTCGA
321 AACTTGGTAGATAGGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAATCTCGA
*
18226762 AGTGAACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTATTG
386 AGTGAACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTG
*
18226827 GCAGCAAACCTATAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
451 GCAGCAAACCTATAAAATCTCAAACGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
18226892 ATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTGCGCACACCCCCCGG
516 ATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * *
18226957 CCCCCCGATCGTCGGAACCCCAATACCG-CTAGTCAGGTTCTTCGATGATGCTCCGGCGATGGTG
581 CCCCCCGATCGTCGGAACCCCAATACAGTC-AATCAGGTTCTTCGACGATGCTCCAGCGATGGTG
* * * * *
18227021 CCCCGATGAAGAAAAATATGGCACCAGCACATGACCGAGCCCAGCATGTGCTGCCGTAACCCTCG
645 CCCCGATGAAGAAAAATACGACACCAGCAAATGACCGAGCCCAGCATGTGCTGCCGCAACCCTCA
18227086 GTCCAGTC
710 GTCCAGTC
18227094 CGATCTTAGACTGGGAATGAACTCCATATGC
1 CGATCTTAGACTGGGAATGAACTCCATATGC
18227125 TTAGACTGGG
Statistics
Matches: 695, Mismatches: 48, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
715 9 0.01
716 37 0.05
717 200 0.29
718 23 0.03
719 424 0.61
720 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (717 bp):
CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGG
CCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGTTCCCTTAAGCCTTCACGTGAAATTTCAAGGCAAGACAACTCATTTTCTATTTTTCACGATT
TTTGAAACTTTTTACAGTTCAGGATTTTTTAAAAGTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
GGTAGATAGGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAATCTCGAAGTGA
ACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTATAAAATCTCAAACGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGC
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CGATCGTCGGAACCCCAATACAGTCAATCAGGTTCTTCGACGATGCTCCAGCGATGGTGCCCCGA
TGAAGAAAAATACGACACCAGCAAATGACCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAG
TC
Found at i:18227127 original size:26 final size:26
Alignment explanation
Indices: 18227098--18227153 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
18227088 CCAGTCCGAT
18227098 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18227124 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18227150 CTTA
1 CTTA
18227154 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18228029 original size:26 final size:26
Alignment explanation
Indices: 18227990--18228042 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18227980 CCGGTTCGAT
18227990 CTTAAACTGAGAATGAACTCCATATG
1 CTTAAACTGAGAATGAACTCCATATG
* * *
18228016 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGAGAATGAACTCCATATG
18228042 C
1 C
18228043 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTGAGAATGAACTCCATATG
Found at i:18228915 original size:26 final size:26
Alignment explanation
Indices: 18228884--18228936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18228874 CCGATATGAT
*
18228884 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
18228910 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18228936 C
1 C
18228937 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18230205 original size:902 final size:901
Alignment explanation
Indices: 18226352--18232681 Score: 8214
Period size: 902 Copynumber: 7.1 Consensus size: 901
18226342 CCAGCATGTG
* * *
18226352 CTGCCGCAACCTTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
18226417 GACGAAACGAGCGGGCAGGTGGGCGGGCGGGCACTACGCCTGCCAGAGAGACGGGATGCGCAAGC
66 GACGAAACGAACGGGC-GGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
18226482 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
18226547 TTTATGGCTTGTAAATTCATACAATGTTCCCTTAAG-CTTCAC-TGAAATTTTACA-GGCAAGAC
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AAGTTT-CATGGCAAGAC
* * * * *
18226609 AACTCATTTTCTATTTTTCACGATTTTTTGAAAACTTTTTACAGTTTGAGATTTTTTAAAAATTT
258 GACTCGTTTTCTATTTTTCACGA-TTTTTG-AAACTTTTTACGGTTCGGGATTTTTT-AAAATTT
* *
18226674 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATAG-GATCCTTTTATTTTTGTTGGCATGCAC
320 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
18226738 AAAAAAATTCAGC-AAAAATCTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAATGTCCCC
384 AAAAAAATTCAGCTAAAAA-CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
18226802 ATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAACGCTCTTTAAGGGGGT
448 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
18226867 GTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
513 GTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * **
18226932 GACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATACCGCTAGTCAGGTT
577 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * ** *
18226996 CTTCGATGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGACCGAGC
642 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * *
18227061 CCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCT
707 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCT
* *
18227126 TAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA
772 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * *
18227191 GCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGAGTCCCCCTCTGCATGCTGCCGATCCTA
837 GCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCGA
* * * *** ** ** * *
18227256 CTACCGTAACCCTTGGTTTGGTCAAATCTTAGACAAGGAAGGAACTCCGTATGCCTAAGCCAACT
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
18227321 GACAAAACGAGCAGGCGGGTGGGCAGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAAC
66 GACGAAACGAACGGGC-GGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
** * * *
18227386 CGTGGATCGATAGGGTGGTAGGTCAGTTTAGGAACATCTTCTTATTTCTGCATGCCAATGCCTTT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
18227451 TTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
18227516 CTCGTTTTCTATTTTGCACGATTTTTGAAACATTTTGCTGTTCGGGAATTTTTAAAATTTTTTCG
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* *
18227581 AAAGGAGTTTTGGCCCCAAACTAGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGA
325 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
18227646 ATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
18227711 ACACTTTAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGGAGTATGAGTT
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * **
18227776 CTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCACCATACATCA
520 CTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
18227841 TGTGCGCACACCCCCCGGCCACCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--C
584 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * * *
18227903 ---G-T---G-GATAGTGCCTCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCAT
649 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* *
18227960 GTGCTGCCGCAACCCTCGGTCCGGT-TCGATCTTAAACTGAGAATGAACTCCATATGCTTAGACT
714 GTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
* * *
18228024 GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGTCGGCCAGA
778 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * * *
18228089 GGGGCGGGATGCACAAGCCGGGGATCAGTCGGGTCTCCCTCTACGTGTTGCCGATCCTA
843 GGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCGA
*** ** * *
18228148 CTGCCGCAACCCTCGGTTTGGTCAAATCTTAGACTAGGAAGGAACTCCGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** *
18228213 GACGAAATGAGTGGGCGGGTGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGC
66 GACGAAACGAACGGGC-GGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
18228278 CGTGGATCGATAGGGTGGTAGGTCGGTTTAGGAACATCTTCTTATTTCTGCATGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
18228343 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
18228408 CTCGTTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
260 CTCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
*
18228473 GAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
324 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
18228538 AATTAAGCTAAAAACTCAAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCA
389 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
18228602 GACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGT
454 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
18228667 TCTTGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACTAGCACCCATCGCACATC
519 TCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
18228732 ATGTGCGCACACACCCCC-CCAGCCCCCCGATCATCGGAACCCCAATACCGCTGGTCAGGTTCTC
583 ATGTGCGCACAC-CCCCCGGC--CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
18228796 CGACGA---T------A--GTGCCCCGATGAAGAAAAATACGGCACCAGAACATGCTCGAGCCTA
645 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
** * *
18228850 GCATGTGCTATCGCAACCCTCGGTCCGATATGATCTTAGACTGGGAATGAACTCCATATGCTTAG
710 GCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * *
18228915 ACTAGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
775 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
** * * * * * *
18228980 AGAGGGGCGGGATGAACAAGCCGAGGATCGGCCGGGTCCCCCTCTGTGTGCGGCTGATCCTG-
840 AGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC-GA
* * * * * * * *
18229042 CTACTGCAAACCTCGATCCAGTCTGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGCCAACT
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18229107 GATGAAACG-A------GT----GGACGGGCACTACGTCGGCCATAGAGACGGGATGCGCAAGCC
66 GACGAAACGAACGGGCGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18229161 GTGGATCGATAGGGTGATAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATCT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
18229226 TTATGGCTCGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
196 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** * * *
18229291 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAATTTTTTTCGG
261 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
* *
18229356 AAGGAGTTTTGGCCCCAAACTAGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAA
326 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
18229421 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
391 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
18229486 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
456 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * *
18229551 TTGAGGTTTGATGAGAGATAGGGGACGAATATAAGGGCCAAGTACTAGCACCCATCGCAGATCAT
521 TCGAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
18229616 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
585 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * * * *
18229681 ATGCTCCGGTGATGGTGCCCCGACGAAGAAAAACGCGGCACTAGCAGATGCCCGAGCCTAGCATG
650 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
18229746 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGG
715 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* * * *
18229811 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGTTCAGCCGGCCAAAGG
780 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * ** *
18229876 GGTGGGATGTGCAA-CTAGGGATCGGTCGGGTCCCCCTCTGCGTTTTGTCGATCCGA
845 GGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCGA
* *
18229932 CTGCTGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18229997 GACGAAACGAACGGGCGGATGGGCGGGCGAGCACTACGTCGACCAGAGAGATGGGATGCGCAAGC
66 GACGAAACGAACGGGCGG-TGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
18230062 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
18230127 TTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCGTTCACGTGAAGTTTCATGGCAAGACAA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** * *
18230192 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTGAAAATTTTTTCG
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
18230257 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
325 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
18230322 ATTCAGCTAAAACCTCAAAGTGTACAAGA-TTTGTGACTATTTGAAAAAAGTGACCCCATTTTAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
18230386 TCACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTGTAAGGGGGTGTGATT
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAGT
* *
18230450 TCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGTCAAGTACCAGTACCCATCGCACATC
519 TCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
18230515 ATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGAAACCCCAATGACGCCGGTCAGGTTCTCTG
583 ATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * ** * *
18230580 ACAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGTGCCAGTACATGCCCGAGCCTAGC
647 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
18230645 ATGTGCTGCCGTAACACTCGGTCC-G---G----T---C------TG--------AT-CTTAGAC
712 ATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* *
18230684 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAACCGGCCAG
777 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * *
18230749 AGGGGCGGGATGCGTAAG-TCGGGGATCAGCCGGGTCCCCCTCTGCATGCTGCAGAT-CG-
842 AGGGGCGGGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCGA
*
18230807 -TGCTG----CC-C-GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * ** *
18230865 AATGAAACG-A---GC---GGGCAGGCGGGCACTAAACCGGCCAGAGAGACGGGAT-CTGTAAGC
66 GACGAAACGAACGGGCGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC-GCAAGC
* *
18230922 CGTGTATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
18230987 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
18231052 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-TGGCTCGGGATTTTTTAAAAATTTTTT-
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTC
* * *
18231115 GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAA
324 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
18231180 AATTTAGCTTAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCA
389 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
18231245 GACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
454 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
18231310 TCTCGAGGTTTGATGAGGGATAGGGGTCCAACATAAAGGCCAAGTACCAGCACCCATTGCACAAC
519 TCTCGAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
18231375 ATGTGCGCACCCATCGCACACACTCCCCCGACCCCCCGATCGTCGGAACCCCAGTGCCACCGATC
583 ATGT--G-------CGCACAC-C-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
* * * *
18231440 AGGTTCTCC-AGCGATGCTCCGACGATAGTGCCCCGACGAAGAATAATGTGGCACCAGCACATGC
637 AGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * ** * * * *
18231504 CTGAACCCAAAATGTGCTGCCGTAACCCTTGGTCCGGTCTGATCTTAGACTAGTAATGAACTCCA
701 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCA
* * * *
18231569 TACGCTTAGACTGGGAATGAACTCCGTATTCCTAAGTCAACCCATGAAACGAGCGTGCGGGAGCT
766 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * ** *
18231634 CAGTCGACCAGAGGGGCGGGATTCGCAAGCCGGGGATAGGTCGGGTCCCCTTCTATGTGCTGCTG
831 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
*
18231699 ATCCTA
896 ATCCGA
* * * ** * * *
18231705 CTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACACCGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
18231770 GACGAAACG-A---GC---GGGCGGGCGGGCATTACGCCGGCCAGAGAGATGGGATGCGCAAGCC
66 GACGAAACGAACGGGCGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * *
18231828 GGGGATCGATAGCGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCGTGCCAATGCCAATT
131 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
18231893 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
196 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * * *
18231958 TCGTTTTCTATTTTTCAGGA-TTTTCAAAATTTTTGCAGTGCGGGATTTTTTAAAATTTTGTC-A
261 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
* * * *
18232021 GAAGGATTTTTGGCCCCAAACTTTGTAGCCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
326 -AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
18232086 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA-CAGTTTGAAAAAAGTGTCCCCATTTCA
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCA
*
18232150 GACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
454 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18232215 TCTCAAGGTTTGATGAGGGATTAGGGGCCAATATAAGGGCCAAGT-CCTAGCACCCATCGCACAT
519 TCTCGAGGTTTGATGAGGGA-TAGGGGCCAATATAAGGGCCAAGTACC-AGCACCCATCGCACAT
* * * * *
18232279 CATGTGCGCTCACCCCCCGGCACCCCCGATCGTCGGAACCCCAATGCCGTCGATTAGGTTCTCCG
582 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
18232344 ATGATGCTCCGGCGATGGTGCCCTGATC-AAGAAAAATGCGACACCAGCACTTGCCCGAGCCCAG
647 ACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
18232408 CATGTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGCGAATGAACAT-CGTATGCTTAG
711 CATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC-TCCATATGCTTAG
* * *
18232472 ACTAGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCC
775 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * ** *
18232537 AGAGGGGCGGGATGCGTAAGCCGGGAATC-GACTGGGTCCCTATCTGCATGCTGCCGATCCTG-
840 AGAGGGGCGGGATGCGCAAGCTGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCC-GA
** * * * * *
18232599 CTATCGCAACCCTTGATCCAGTCTGATCGTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
18232664 GATGAAATGAAAGGGCGG
66 GACGAAACGAACGGGCGG
18232682 GCGGGTGGGT
Statistics
Matches: 4767, Mismatches: 537, Indels: 248
0.86 0.10 0.04
Matches are distributed among these distances:
859 105 0.02
860 351 0.07
861 2 0.00
862 1 0.00
864 2 0.00
867 1 0.00
868 57 0.01
869 9 0.00
870 117 0.02
871 1 0.00
874 6 0.00
876 82 0.02
877 30 0.01
878 1 0.00
880 43 0.01
881 177 0.04
882 305 0.06
883 1 0.00
885 2 0.00
886 2 0.00
887 2 0.00
889 2 0.00
890 95 0.02
891 173 0.04
892 600 0.13
893 174 0.04
894 607 0.13
895 8 0.00
896 117 0.02
897 4 0.00
898 5 0.00
899 3 0.00
900 2 0.00
901 155 0.03
902 695 0.15
903 63 0.01
904 237 0.05
905 521 0.11
906 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAACGGGCGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
GCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCGA
Found at i:18232925 original size:26 final size:26
Alignment explanation
Indices: 18232896--18232948 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18232886 CCAATCCGAT
*
18232896 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18232922 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18232948 C
1 C
18232949 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18233821 original size:26 final size:26
Alignment explanation
Indices: 18233785--18233837 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18233775 TCGGTCCGAT
*
18233785 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18233811 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18233837 C
1 C
18233838 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18234517 original size:880 final size:878
Alignment explanation
Indices: 18232710--18237862 Score: 5973
Period size: 869 Copynumber: 5.8 Consensus size: 878
18232700 TACGGGCTAG
* * *
18232710 GTACCAGCACCCATCACACATCATGTGCACACACCCCCCCCGCGGCCCCCCGATCGTCGAAACCC
1 GTACCAGCACCCATCGCACATCATGTGCGCACA---CCCCC-CGGCCCCCCGATCGTCGGAACCC
* ** *
18232775 CAATGCCGTAGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCTCCGGTGAAGAAAAATGCGG
62 CAATGCCGTCGGTCAGG-T-TCC-------C--CGACGATGGTGC-CCGACGAAGAAAAATGCGT
* * * * ** ** *
18232840 CACCAGCACATACCCGAGCCTAGCATGTGCTGCCGCAACCCTAGGCCCAATCCGATCTTAGATTG
115 CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTG
*
18232905 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGA
180 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGA
* * * * * *
18232970 GCGTGCGGGCGCTCAGCTGACCAGAGGGGTC-GGATGCACAAGTCG-GGGTGGGTCGGGTCCCCC
245 GCGTGCGGGCGCTCAGCCGGCCAGAGGGG-CGGGATGCGCAAGTCGAGGATCGGTCGAGTCCCCC
* * *
18233033 TATGCGTGCTACCGATCCTGTTACCGCAACCCTC-GATCCGGTCTGATCTTAGACTGGGAAAGAA
309 TCTGCGTGCTA-CGATCCTGCTACCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAA
18233097 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGGCGGTCGGGCACTACGCCGGCC
372 CTCCGTATGCCTAAGCCAACCGACG-AA--A-C-GG-AG-C--G-GG-CGGGCACTACGCCGGCC
* * ** *
18233162 AGAGAGACTGGATGCGCAAGCGATGGATCGATAGGGTGAAAGGTGGGTTTAGGCACATCTTCATA
426 AGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATA
** *
18233227 TTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACG
491 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
** * *
18233292 AAAAGTTTCATGGCAAGAC-ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT-T
556 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCA
* * *
18233355 GAGATTTTTTAAAATTTCTTCGAAAGG-GTTTTGACCCTAAACTTGGTAAACGTGATCCTTGTAT
621 G-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTAT
*
18233419 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
685 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT
* * * * *
18233484 GAAAAAAATGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGTAAACTTGTAAAAACTCAAAT
750 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* ** * ** * *
18233549 GCTCTTTAAGGGGCTGTGAGTTCTTAAGGTTTGATGAGAGATAGGGGGATAATATACGGGCCAA
815 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAA
* **
18233613 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCAACGATAATCGGAACCCCAA
1 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTCGGAACCCCAA
* *
18233678 TGCCGACGGTCAGGTTCCCCGACGATGGTGCCCTGACGAAGAAAAATGCGACACCAGCACATGCC
65 TGCCGTCGGTCAGGTTCCCCGACGATGGTGCCC-GACGAAGAAAAATGCGTCACCAGCACATGCC
* * * *
18233743 CGAGCCCAGCATGTGCTACAGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCTGT
129 CGAGCCCAGCATGTGCTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
18233808 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCCCTC
194 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTC
* * * *
18233873 AGCCAGCCAGAGGGGCGGGATGCGGAAGTAGAGGATCGGTCGAGTCCCCCTCTGCGTGCTGCAGA
259 AGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTCGAGTCCCCCTCTGCGTGCTAC-GA
* *
18233938 TCCTGCTACCACAACCCTCAGTCCGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGC
323 TCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
18234003 CAACGGACGAAAC-GAGCGGGCGGGCACTACGCCGGCTAAAGAGATGGGATGCGGAAGTCATGGA
388 CAACCGACGAAACGGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGA
* * * *
18234067 TCGATAGGGTGGTAGCTGGGTTTAGGCACACCTTCATACTTCTGCATGCCAATGCCAATTTTATG
453 TCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
*
18234132 GCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
518 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
18234197 TTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGA
583 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGA
* *
18234262 TTTTTAACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
648 GTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
18234327 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAGACTT
713 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
18234392 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
778 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
18234457 GTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAA
843 GTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAA
* ** *
18234493 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCTCCTCGATCACCGAAACCCCA
1 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC-CCCCGATCGTCGGAACCCCA
*
18234558 ATACCGTCGGTCAGGTT------C-----T--CCGACGAAGAAAAATGCGTCACCAGCACATGCC
64 ATGCCGTCGGTCAGGTTCCCCGACGATGGTGCCCGACGAAGAAAAATGCGTCACCAGCACATGCC
* * * *
18234610 CGAGCCCAGCATGTGCTGCCGCAACCCT-GG-TCTGATCCGATCTTAGACTGGGAATTAACTCTG
129 CGAGCCCAGCATGTGCTACCGCAACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * *** * *
18234673 TATGCTTAGACTGGGAATGAACTCTGTACGCTTAAGTCAACCCACAAAATGATCGTATAGGTGTT
193 TATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCT
* * * * * * * *
18234738 CAACCGACCAGAGGGGCGGGATGCGTAAGCCGGGGATC-GACCAGGTCCCCC-CTGCATGCTACC
258 CAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTCGA-GTCCCCCTCTGCGTGCTA-C
* * * * ** *
18234801 GATCTTGCTGCCACAATCCTCAGTCTAGTCTGATCCTAGACTGGGAATGAACTCCGTATGCCTAA
321 GATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
18234866 GCCAATCGACGAAACAAGCGCA-CGGGCGAGG-ACTACGTCGGCCAGAGAGACGGGATACGCAAG
386 GCCAACCGACGAAAC--G-G-AGCGGGCG-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
** * * * *
18234929 CTGTGGATCGATTA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGGCA
446 CCATGGATCGA-TAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * * *
18234993 TTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCATCACGCGAAGTTTCATGGCGAGAC
510 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
18235058 GACTCGTTTTCTATTTTTCACGATTTTTCAAAACTTTTTGCTGTTC-GAGATTTTTTTAAATTTT
575 GACTCGTTTTCTATTTTTCACGATTTTT-GAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTT
* ** *
18235122 TTCGAAAGGAGTTTTGGCCCCAAACTTTATAGACGTGATCCTTGTATTTTTCTTGGCATGCACAA
638 TTCGAAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
18235187 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
703 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
18235252 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
768 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18235317 AGTTGTCGAGGTTTGATGAGGGATAGGGGG-CAA-GTATCAGGGCCAA
833 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATGTA--AGGGCCAA
** *
18235363 GTACCAGCACCCATATCACATCATGTGCGCACA-CCCCCGGCCCCATCGATCGTCGGAACCCCAA
1 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTCGGAACCCCAA
* * * *
18235427 TACCGTCAGTCAGGTT------C-----T--CCGATGAAGAAAAATACGTCACCAGCACATGCCC
65 TGCCGTCGGTCAGGTTCCCCGACGATGGTGCCCGACGAAGAAAAATGCGTCACCAGCACATGCCC
* ** ** * * * *
18235479 GAGCCTAGCATGTGCTGTCGCAACCAGCGGTTTGGTTCAATCTTAGACTGGGAATGAACTCCATA
130 GAGCCCAGCATGTGCTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
18235544 TGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
195 TGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * *
18235609 GCCGGCAAGAGGGGTGGGATGCGCAAGTCGGGGATC-GACTGGGT-CCCC-ATGC-TAC--CGAT
260 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTC-GAGTCCCCCTCTGCGTGCTACGAT
* * ** * * *
18235668 CCTGCTATCGCAACCCTCAATATGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAAGCC
324 CCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * * * *
18235733 AACCGAC-AAAATGAGTGGGCGGGCACTACGCCGCCCAAAGAGATGGGATGCGAAAGCCATGGAT
389 AACCGACGAAACGGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
* * * * *
18235797 CAAGAAGGTGGTAGCTGGGTTTAGGCACATCTGCATACTTCTACATGCCAATGCCATTTTTATGG
454 CGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* * * *
18235862 CTTGTAAATTCGTACAATGGTCCCTTAAGCCTTTACATGAAGTTTCAGGGCAAGACGACTCGTTT
519 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * *
18235927 TTTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTTAAATTTTTTCGGAAGGAG
584 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAG
*
18235992 TTTTGA-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGC
649 TTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
18236056 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAGACTTT
714 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
18236121 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
779 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
18236186 TTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAA
844 TTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAA
* * *
18236221 GTACCAGCACCCATCGTACATCATGCGCGCAAACCCCCCCGGCCCCCCCGATCGTCGGAACCCCA
1 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCCA
** * * *
18236286 ATGCCACCGGTCAGGTTCTCCAACGATGCTCCGATGATGGTGCCCCGACAAAGAAAAATTCGGCA
64 ATGCCGTCGGTCAGGTTC-CC--CGA-----C---GATGGTG-CCCGACGAAGAAAAATGCGTCA
* * * * * * *
18236351 CCAGCAAATGCTCTAGCCCAGCATGTGCTACTGCAACCATCGGTCCGGTTCGATCTTAGACTGGG
117 CCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGG
* *
18236416 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCGACCCACGAAACGAGC
182 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGC
* * * * * * *
18236481 ATGCGGGTGCTCAGCTGGCCAGAGGGGCAGGATGCGAAAGTCGAGGATCGATCGGGTCCCCCTCT
247 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTCGAGTCCCCCTCT
* * * * * * * * *
18236546 GAGTGCTGTCGATCCTGCTGCCGTAACCCTCAATTCGATCCGATCTTAGACTGGAAATGAACTCC
312 GCGTGCT-ACGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* *
18236611 GCATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTATGCCGGCCAGAG
376 GTATGCCTAAGCCAACCGACG-AA--A-----CGGA---GCGGGCGGGCACTACGCCGGCCAGAG
* * *
18236676 AGACGGGATGCGCCAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
430 AGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTC
** * *
18236741 TATGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAA
495 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * * *
18236806 GTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTAGGAT
560 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGAT
* * * ** *
18236871 TTCTTAAAATTTTTTCAAAAGGAGTTTT-AGTCCCAAACTTCATAGACGTGATCTTTGTATTTTT
625 TTTTTAAAATTTTTTCGAAAGGAGTTTTGA-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * ***
18236935 GTTGGCATGAACAAAAAAATTTAGCTAAAAACTCGAAGTGTACCTTATTTTGTGACCATTTGAAA
689 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
18237000 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
754 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
18237065 TTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
819 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAA
* * * *
18237125 GTACCAGCACCGATCGAACATCA--TGCGCACACCCCCTGGCCCCCCGATCGTCGGAACCACAAT
1 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
* * *
18237188 GCCGTCGGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGGCAAAGAAAAATGCGTTACC
66 GCCGTCGGTCAGG-T-T-C--C----C-C-GACGATGGTG-CCCGACGAAGAAAAATGCGTCACC
* *
18237253 AGCACATGCCCGAGCCCAGAATGTGCTACCGCTACCCTCGGTCCAATCCGATCTTAGACTGGGAA
119 AGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC-G--------G---TT---C--GG--
* *
18237318 TGAACTCCATGTGCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATG
165 T---C-CGA--T-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
* * ** *
18237383 CCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGA-GGGCGGGATGCATAAGC
223 CCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGT
* * * * * * * * *
18237447 CAAGGATCGG-CCATGACCCCCGCTGCGTGCTATCGATCCTGGTGCTGCAACCCTC-GATCTGGC
288 CGAGGATCGGTCGA-GTCCCCCTCTGCGTGCTA-CGATCCTGCTACCGCAACCCTCAG-TCCGGT
* * *
18237510 CTGA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAA-TGAGCTGGCGGGCG
350 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGAGCGGGCGGGC-
* ** * * *
18237573 AGCGCTACGCTGGTTAGAGAGACGGGATGCGCAAGCCATCGATCGATAGGATGGTAGCTGGTTTT
414 A---CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGCTGGGTTT
* *
18237638 AGGCACATCTTCATATTTCTACGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
476 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * *
18237703 ACTTAAGCCTTCACTTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAA
541 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
18237768 ACTTTTTGCAGTTCAGGATTTTTTAAAATTTCTTCGAAA-AACGTTTTGGCCCCAAACTTGGTAG
606 ACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGA-GTTTTGACCCCAAACTTGGTAG
* *
18237832 ACATGATCCTTGTATTTGTTTTTGGCATGCA
670 ACGTGATCCTTGTATTT-TTGTTGGCATGCA
18237863 NNNNNNNNNN
Statistics
Matches: 3671, Mismatches: 450, Indels: 244
0.84 0.10 0.06
Matches are distributed among these distances:
858 235 0.06
859 53 0.01
860 208 0.06
861 4 0.00
863 3 0.00
864 63 0.02
865 84 0.02
866 122 0.03
867 59 0.02
868 109 0.03
869 293 0.08
870 290 0.08
874 1 0.00
875 1 0.00
878 146 0.04
879 66 0.02
880 248 0.07
881 39 0.01
882 4 0.00
883 2 0.00
884 1 0.00
885 178 0.05
886 6 0.00
887 3 0.00
888 5 0.00
889 180 0.05
890 93 0.03
891 68 0.02
893 2 0.00
895 1 0.00
898 3 0.00
899 8 0.00
900 128 0.03
901 9 0.00
902 8 0.00
903 249 0.07
904 233 0.06
907 1 0.00
908 3 0.00
909 1 0.00
912 10 0.00
913 1 0.00
915 4 0.00
916 236 0.06
917 13 0.00
919 1 0.00
921 1 0.00
923 4 0.00
924 40 0.01
925 60 0.02
926 91 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
GCCGTCGGTCAGGTTCCCCGACGATGGTGCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCG
AGCCCAGCATGTGCTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTCGAGTCCCCCTCTGCGTGCTACGATCC
TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCG
ATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTT
TTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATGTAAGGGCCAA
Found at i:18234680 original size:26 final size:26
Alignment explanation
Indices: 18234651--18234706 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18234641 CTGATCCGAT
* *
18234651 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTACG
18234677 CTTAGACTGGGAATGAACTCTGTACG
1 CTTAGACTGGGAATGAACTCTGTACG
18234703 CTTA
1 CTTA
18234707 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTACG
Found at i:18235556 original size:26 final size:26
Alignment explanation
Indices: 18235520--18235572 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18235510 TTGGTTCAAT
*
18235520 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
18235546 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
18235572 C
1 C
18235573 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:18236434 original size:26 final size:26
Alignment explanation
Indices: 18236405--18236457 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18236395 CCGGTTCGAT
18236405 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18236431 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18236457 C
1 C
18236458 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.