Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 97 of 117
Found at i:18237383 original size:26 final size:26
Alignment explanation
Indices: 18237305--18237376 Score: 135
Period size: 26 Copynumber: 2.8 Consensus size: 26
18237295 CCAATCCGAT
*
18237305 CTTAGACTGGGAATGAACTCCATGTG
1 CTTAGACTGGGAATGAACTCCATATG
18237331 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18237357 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
18237377 TGTATGCCTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18239263 original size:27 final size:27
Alignment explanation
Indices: 18239223--18239275 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
18239213 CAATCCGATC
* *
18239223 TTAGACTGGGAATGAAC-TCGGTATGCG
1 TTAGACTAGAAATGAACTTC-GTATGCG
18239250 TTAGACTAGAAATGAACTTCGTATGC
1 TTAGACTAGAAATGAACTTCGTATGC
18239276 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (27 bp):
TTAGACTAGAAATGAACTTCGTATGCG
Found at i:18240163 original size:26 final size:25
Alignment explanation
Indices: 18240121--18240172 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
18240111 CCGGTCCAAT
* *
18240121 CTTAGACTTGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
18240146 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
18240172 C
1 C
18240173 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:18242885 original size:26 final size:26
Alignment explanation
Indices: 18242833--18242885 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18242823 CTGGTCTGAT
*
18242833 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
18242859 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
18242885 C
1 C
18242886 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:18243530 original size:899 final size:899
Alignment explanation
Indices: 18238863--18250213 Score: 14251
Period size: 899 Copynumber: 12.7 Consensus size: 899
18238853 NNNNNNNNNN
* *
18238863 ACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGT-CC
1 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
** * *
18238926 CATTTTTGACAC-TTAATGACTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
18238990 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCAATC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
18239055 GCACATCATGTGCGCACACCCCCCAG-CCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGT
196 GCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
18239119 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAGTGCGGCACCAGCACATGCCTGAG
261 TCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * ** *
18239184 CCCAGCATGTGCTGCCACAACCCTCTGTCCAATCCGATCTTAGACTGGGAATGAACTCGGTATGC
326 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
18239249 GTTAGACTAGAAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGT
391 -TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
18239314 CGGCCAGAGGGGCAGGATGCACAAGTCGTGGATCGA-TCAGGTCCCCCACTGCATGCTGCCGATC
455 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * **
18239378 CTGCTGCCACAAACCCTCTATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
520 CTGCTACCAC-AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
*
18239443 AACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
584 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
18239508 CGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAGTGCCATT
649 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
18239573 TTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGCAAGACGA
714 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
18239638 ATCGTTTTCTATTTTTTATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
779 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGATTTTTTAAAATTTTTTCG
** * *
18239703 GAAGGAGTTTTGGCCGTAAACTTGGTGGACATGATCCTTGTA-TTTTGTTGGCATGC
843 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
18239759 ACAACAAAATTCAGCTAAAAACTC-AATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
1 ACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
18239823 CCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
65 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
18239888 GTGTCAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCAAT
130 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
18239953 CGCACATCATGTGCGCACACCCCCCC-AGCCCCCTATCGTCGGAACCCCAATGTCGCCGGTCAGG
195 CGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * * * *
18240017 TTCTCCGGTGATGCTCCGACGATCGTGCCCCAATGAAGAAAAATGAGGCACCAGCACATGCCCAA
260 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * *
18240082 GCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACT-TGAATGAACTCTGTATG
325 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
18240146 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAATGAGTGTGCGAGCGCTCAGC
390 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
18240211 CGGCCAGAGGGGAAGGATGTGCAAGCTGGGGATCGGC-CGGGCCCCCCTCTACGTGCT-CTTGAT
455 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGC-CGAT
* * *
18240274 CCTGCTACCACAAACCCTCAGTCTGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGC
519 CCTGCTACCAC-AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
18240339 CAACCGACGAAACGA----GC-GGCGGGTGGGCACTGCGCCGACTAGAGAGATC-GGATGCGCAA
583 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA-CGGGATGCGCAA
** * * * *
18240398 GCCGTGGATCGATAGGGTGCCAGGTGGGTTTGGGTACATCTTCATATTTATGCATTGCCAAAGCC
647 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCC
18240463 ATTTTTAT-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAAGTTTCCATGGCAA
711 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AAGTTT-CATGGCAA
* *
18240527 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTAACGGTTCGAGATTTTTAAAAATTT
774 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGATTTTTTAAAATTT
* * *
18240592 TTTTGGAAGAAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTT-TATTTTT-TTGGTATGC
838 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
18240651 ACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCC
1 ACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
18240716 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AATGCTCTTTAAGGAG
65 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
18240780 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCAT
130 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * **
18240845 CGCACTTCATGTGCGCACACCCACCCGAAAACCCCTCGATCGCCGGAACCCCCAATGCAACCGGT
195 CGCACATCATGTGCGCACACCCCCCCG---ACCCCCCGATCGTCGGAA-CCCCAATGCCGCCGGT
* * * *
18240910 CAGGTTCT-CGGTGATGCTACCGGCCTATGGGTGCCCCGATGAAGAAAAAATGCCAGCACCAGCA
256 CAGGTTCTCCGGTGATGCT-CC-GACGAT-GGTGCCCCGACGAAG-AAAAATG-CGGCACCAGCA
* ** * *
18240974 CATGCCCG-GCCCAGCATGTGCTGCCGCAACCCTCAGTTGGGTCCGATCTTGGACTGCGAATTGA
316 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA-TGA
* *
18241038 ACTCCATATGCTTAGACTGGGAATAAACTCCGTATGCCCTAAGTCAACCCACGGAAACGAGCGTG
380 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG-CCTAAGTCAACCCAC-GAAACGAGCGTG
* * *
18241103 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGGCGCAAGTCGGGGAT-GCAATCGGGTCCCCCTCT
443 CGGGCGCTCAGCCGGCCAGAGGGGCGGGAT-GCGCAAGCCGGGGATCG-ACTCGGGTCCCCCTCT
* * * *
18241167 ACGTGCT-CCTTGATCCTGCTGCCA-GACCGCTCGGTCCGGTCTGATCTTAGAATGGGAATGAAC
506 GCGTGCTGCC--GATCCTGCTACCACAACC-CTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * *
18241230 TCTGTATGCCTAAGGGCAACCGACGAAACGAGGCGCAGCTTTGCGGGCGGGCGGGCACTACGTCG
568 TCCGTATGCCTAA-GCCAACCGACGAAACGA-GCG--G----GCGGGCGGGCGGGCACTACGCCG
* **
18241295 GCCTAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGCGGTGCCAGGTGGGTTTTAGGCAGCAT
625 GCC-AGAGAGACGGGATGCGCAAGCCGTGGATCGATAG-GGTGGTAGGTGGG-TTTAGGCA-CAT
* *
18241360 CTTCATATTT-T-CATGCCAATGGCCATTTTTATGG-TTGTAAATTGATAAAATGGTCCCTTAAG
686 CTTCATATTTCTGCATGCCAAT-GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
18241422 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTT
750 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* ** * *
18241487 CCGGTTCATGATTTTTTTTAATTTTTTCGGAAGGCGTTTTGGCCCCAAACTTGGTTGACGTGATC
815 ACGGTTCA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
18241552 CTTGTATTTTTTTTTGGCATGC
879 CTTGTA-TTTTTGTTGGCATGC
*
18241574 ACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CC
1 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
18241638 CATTTGAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
18241703 TGTGAGTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
18241768 GCACATCATGTGCGCACA-CCCCCCGACCCCCTCGATTGTTC-GAACCCTAATGCTGCCGGTCAG
196 GCACATCATGTGCGCACACCCCCCCGACCCCC-CGATCG-TCGGAACCCCAATGCCGCCGGTCAG
* * * * *
18241831 GTTCTCCGGCGATGCTTCGACGATGGTGCCCCTATGAAGAAAAATGTGGCACCAGCACATGCCCG
259 GTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * * * *
18241896 AGGCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTGT
324 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
18241961 GCTTAGACTGGGAAT-AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
389 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * * *
18242025 TCTGCCAAAGGGGTGGGATGCGTAAGCCGGGGATCGGC-CAGGTCCTCTTCTGCGTGCTACTGAT
454 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * ** * *
18242089 CCTGCTGCCGCAACTCTCTATCCAGTCTGATCTTAGACTGGGAATGAACACCGTATGCCTAAGCC
519 CCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
18242154 AACCGACGAAACAAGCAGGCGGGCGGGCGGGCACTACGCCGACTAGAGAGACTGGATGCGCAAGC
584 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
** *
18242219 CGTGGATCGATAGGGTGCCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGGCATT
649 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
18242284 TTTTTGGCTTGTAAATTGATACAATGCTCCCTTAAG-CTTCACGTGAAGTTTCATGGCAAGACGA
714 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * ** * *
18242348 CTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGATTTTTAAAAATTTTTTTG
779 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG-TTCAGATTTTTTAAAATTTTTTCG
* * *
18242413 GAAGGCGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
843 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * * *
18242470 AAAAAAAAATTCAGCTACAAGCTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCC
1 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
18242535 CATTCCAGACACTTTAAAGGCTACTGGCAGCTAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
18242600 TGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
*
18242665 GCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
196 GCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * *
18242730 TCTCCGGTAATGCTCCGACGATAGTGCCCCGACGAAGAACAACGCGGCACCAGCACATGCCCAAG
261 TCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * *
18242795 CCTAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGCATGC
326 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
*
18242860 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC
391 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
18242925 GGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGACT-GGGTCCCCCTCTGCGTGCTGTCGATCC
456 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
18242989 TGCTACCGCAACCCTCGATCTGGTCTAATCTTAAACTGGGAATGAACTCCGTATACCTAAGCCAA
521 TGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18243054 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAAAGACGGGATGCGCAAGTCA
586 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
** * *
18243119 TGGATCGATAGAATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
651 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
18243184 GATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
716 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
18243249 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCATGATTTTTTAAAATTTTTTCGAA
781 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCA-GATTTTTTAAAATTTTTTCGGA
* * *
18243314 AGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGACATAC
845 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
** * *
18243369 ACAAAAGCATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCC
1 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
18243434 CATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * ** *
18243499 TGTGAGTTGTCAAGGTTTGATGAGGGATAGGGCACCAATATAAGGGCCAAGTACCAGTACCCATC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * * *
18243564 GCACATCATGTGCGTACA-CCCCCCGGCCTCCCCGATCGTTGTAACCCTAATGCCGTCGGTCTGA
196 GCACATCATGTGCGCACACCCCCCCGACC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
18243628 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
260 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * * * *
18243693 GCCTAGCATGTGCTGTCGCAACCGTCGGTCTGGTCCGATCTTAAACTAGAAATGAACTCCGTATG
325 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** ** ***
18243758 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCGCGAAATAATTGTGCGATTGCTCAGC
390 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18243823 CGCCCAGAGGGGCGGGATGTGTAAGCCGGGGTTC--CT----T----CTCTACGTGCTTCCGATC
455 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCCGATC
** * * * *
18243878 CTGCTACTGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTA
520 CTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * *
18243943 ACCGACGAAACAAGCTGGCGGGTGTCCGGGCAGGCACTATACCGACCAGAGAGACGGGATGCGAA
585 ACCGACGAAACGAGCGGGC-GG-G--CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
** ** * *
18244008 AGCCGTGGATCGATAGGGTGACAGGTGGGTTTACTCACATCTTCATATTGCTGCGTGCCAATGCC
646 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
18244073 ATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
711 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * ** *
18244138 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTTTAAATTTT
776 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG-TTCAGA-TTTTTTAAAATTTT
* * * *
18244203 TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAGGC
839 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
18244264 ACAAAAAAATTCAG-TGAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTC
1 ACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
18244328 GCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAAGATCTCAAATGCTCTTTAAGGGG
65 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
18244393 GTGTGAGTTCTCGAGGTTTGATGAGGGACATGGGGCCAACATAAGGGCCAAGTACCAGTACCCAT
130 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
18244458 CGCACATCATAG-GCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCTAATGGCACCGGTCAG
195 CGCACATCAT-GTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * ** * *
18244521 GTTCTCCGGGGATGCTTCGGCGATGGTGCCCCGACGAAG-AAAATGTAGCAACAGCACATGCTCG
259 GTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* *
18244585 AGCCTAGCATGTGCTGCCACAA-CC-C--T-C--T--G----T---CT--G---G---TCC--AT
324 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
18244624 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAGGAGCGTGCGGGCGCTCAG
389 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
18244689 CCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCG-GTCGGGTCCCCCTCTACATGCTGTCAAT
454 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * * * *
18244753 CCTGCTGCCGCAA-CCTCCAGTTCGGTCTAATCTTAGACTAGGAATGATCTCCGTATGCCTCAGC
519 CCTGCTACCACAACCCT-CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * ** * * * *
18244817 CAACCGATGAAATGAGCAGGCAGCCGGGCGACCGGGCACTACACCAGCTAGAGAGACGGGAGGCG
583 CAACCGACGAAACGAGC-GG--G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
18244882 CAAGCCATGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCACGCCAATG
644 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
18244947 CCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
709 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** * *
18245012 GACGACTCATTTTCTATTTTTCATGATTTTAAAAACTTTTTATGGTTCTGGATTTTTTAAAATTT
774 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGATTTTTTAAAATTT
** * * * **
18245077 TTTCTAAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTAGGATTTTTTGCAGG-ATGC
838 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGC
* *
18245139 ATAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
1 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * * *
18245204 CATTTTAAACACTTTAATGGCTACTGGCAGTAAATCTGTAAAATCTCAAATGCTCTTGAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
18245269 TGTGAGTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
18245334 GCACATCCTG-G-GCACACCCCCCGGCCCCCCCGATCG-CTGGAACCCTAATGCCACCGGTCAAG
196 GCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGG
* * * *
18245396 TTCTCC----A-G-T-----GATGGTGTCCCGACGAAGAAAAATGCGACACAAGCACGTGCCCGA
260 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * *
18245450 GCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACCCCGTATG
325 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
18245515 CTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTAAGC
390 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18245580 CGGCCAGAGGGGCGGGATGCACCAGCTGGGGATCG-GTCGGGTCCCCCTCTGCGTGTTGCCGATC
455 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
18245644 CTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGGCTAAGCCA
520 CTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* **
18245709 ACTGAC-AAA--A-CGAACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
585 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
** * *
18245770 GTGGATCGATATAGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCACGCCAATGCCATTT
650 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
18245835 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGAC
715 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
18245900 TCATTTTCTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGG
780 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGATTTTTTAAAATTTTTTCGG
* *
18245965 AAGGAG-TTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
844 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
18246020 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
1 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
18246085 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
18246150 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCACTATAAGGGCCAAGTACCAGCACCCATC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
18246215 GCACATCATGTGCGCACA--CCCCCGACCCCCTGATCG-CTGGAACCCCTAT--C-CC-GTC--G
196 GCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGG
* ** ** * *
18246271 --ATCAAGT--T-CTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGA
260 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* *
18246331 GCCCAGTATGTGCTGCCGCAA-CCT---T-C-G---G-TC-----C---G---G---TCC-AATG
325 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18246371 -TTAGATTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
390 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
18246435 CGGCCAGAGAGGCGGGATGCGGAAGCCAGGGATCGAC-CTGGTCCCCCTTTGCATCCTGCCGATC
455 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
18246499 CTGCTGCCACAACCCTCTGTCTGATCAGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCA
520 CTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
18246564 ACCGACGAAACGAGTGGGTGGGCGAGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCA
585 ACCGACGAAACGAGCGGGCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
18246629 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
646 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
18246694 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
711 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
18246759 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTCTT-CGGTTCCAGATTTTTTAAAATTTTT
776 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT-CAGATTTTTTAAAATTTTT
*
18246823 TCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
840 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
18246883 ACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
1 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
18246948 CATTTCAGACACTTTAATTGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
18247013 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
18247078 GCACATCATGTGCGCACAGCCCCCCCGGCTCCCCCGATCATCGAAACCCCAATGCCGTCGGTTAG
196 GCACATCATGTGCGCACA-CCCCCCCGAC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * *
18247143 GTTCTCCGGCGA---T---AC-----T---CCGACAAAGAAAAATGCGGCACCAGCACGTGCCCG
259 GTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * * ** * *
18247194 AACCTAGCATGTGTTGCTGCAACCCTCTGTCCAATCCAATCTTAGACTGGAAATGAACTCCGTAT
324 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
18247259 GCTTAGACTGGGAATGAACCCCATATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAG
389 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
18247324 CCGGCCAGAGGGGCGGGATCCGCAAGCCGAGGATCG-GTCGGGTCCCCCTCTGCATGTTGCCAAT
454 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * *
18247388 CCTACTATCC-TAACCCTCGGTCCGGT-TCGACCTTAGTCTGGGAATGAACTCCGTATGCCTAAG
519 CCTGCTA-CCACAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
18247451 CCAACCGATGAAAGGAGCGAGGCGGGTGGGCATGCGGGCATTACGCCGGCCAGAAAGACGGGATG
582 CCAACCGACGAAACGAGCG-GGCGGG-CGG---GCGGGCACTACGCCGGCCAGAGAGACGGGATG
* *
18247516 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
642 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
18247581 TGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
707 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
18247646 AAGAC-ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAAT
772 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGATTTTTTAAAAT
* * * * * * *
18247710 TTTTTGGGAAGGATTTTTGGCCCCAGAGTTGGTAGATGGGATCCTTGTATTTTTGTTGGCCTGC
836 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
18247774 A-TAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTCAAAAAAGTGTCCC
1 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
18247838 CATTTCAAACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * * *
18247903 TGTGAGTTCTCAAGGTTTGATGGGGGATA-GGGGCCAATATCAGGGCGAAGTACTAGCACCCATC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *** * *
18247967 GCACATCATGTGCGCACA-CCCCCCGGCCCCTTCGATAACCGGAAGCCCAATGCCGCCGATCAGG
196 GCACATCATGTGCGCACACCCCCCCGACCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
** * * *
18248031 TTCTCCGACGATGCTCCGGCGATGGTG-CCCTAGCGAAGAAAAATGCGGCACCAGCACATGCCCA
260 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCG
* *** * * * *
18248095 AGCCCAACATGTGCTATTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGATTGAACTCCGTAT
324 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
18248160 GCTTAGACTGGGATTGAACTTCGTATGCCTAAGTCAACCCCAC-AGAACGAGCGTGCGAGCCCTT
389 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCCACGA-AACGAGCGTGCGGGCGCTC
* * * *
18248224 AGCCGACCAGAGGGGCGGGATGCGCAAGCTGGGGAACGA-TCGGGTCCACCTCTGCGTGCTGCCG
452 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCCG
* * *
18248288 ATCCTGCTACCACAACCCTCGGTTCGATCCT-AACTTAGACTGGGAATGAACTCCGTATGCCTAA
517 ATCCTGCTACCACAACCCTCGGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
18248352 G-GAGACCGACG--AC-A-----CGTGCGGGCGGGCATTACGTCGACCAGAGAGACGGGATGCGC
581 GCCA-ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * ***
18248408 AAGCCGTGGATCAATAGGGTGGTAAGTGGGTCTAGGCACATCTTCATATTTCTATGTGCCAATGC
645 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
18248473 CATTTTTACGGCCTGTAAATTCATAAAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAG
710 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18248538 ATCG-CTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
775 A-CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGATTTTTTAAAA-TT
* * *
18248602 TTTTC-AAAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGC
837 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * * *
18248664 ACAAAAAAATTGAGCTAAAAACTTGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCG
1 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
18248729 CATTTCAGACACCTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
18248794 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT-GAAGGGCTAAGTACCAGCACCC-TC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
18248857 GCACATCATGTGCGCACACTCCCCCC-AGCCCCCACGATCGTTGGAACCCCAATGTCGCCGGTCA
196 GCACATCATGTGCGCACAC-CCCCCCGA-CCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCA
* * **
18248921 GGTTCTCCGGTGATGCTCC-AGCGATGGTACCCTGACGAAGAAAAATGCAACACCAGCACATGCC
258 GGTTCTCCGGTGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * * * *
18248985 CGAGCCCAGTATGTGCTGGCACAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGGACTCCAT
322 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
18249050 ATGCTTGGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTC
387 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
18249115 AGTCGCCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTACCG
452 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCCG
* ** *
18249179 ATCCTGCTACCCCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
517 ATCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * * * * *
18249244 CCAATTGACAAAACGAGCGGGTGGGCAGGTGGGCACTACACCGGCCAGAGAGACGGAATGCGCAA
582 CCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
18249309 GCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCA
647 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
18249374 TTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
712 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * *
18249439 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTCTT
777 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGATTTTTTAAAATTTTTT
*
18249504 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTT-TTGGCATGC
841 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * * * * *
18249562 AAAAAAAAATTCAGCTAGAAACTCAAAGTGTACAATATTTTGTAACCATTTGAAAAAAGTGTCAC
1 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
18249627 CATTTCAGACACTTTAATGGCTACTGGCAGTC-AACCTGTAAAATCTCAAATGCTATTTAAGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAG-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
18249691 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAACTACCAGC-CCTCA
130 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC-CA
* * * * * * *
18249755 TCGCACATCTTCTGTGCATACCGCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTT
194 TCGCACATCATGTGCGCACACC-CCCCC-GACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
** * * ** *
18249820 AGGTTCTCCGACGATGCTTCGACGATGGTGCCCTGGTGAAGAAAAATGTGGCACCAGCACATGCC
257 AGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* ** * *
18249885 CGAGCCCAGCATGTGCTGTCGTTACCCTCTGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGT
322 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * *
18249950 ATGCTGAGACTGGGAATGAACTCCGTATGCCCAAGTCAAACCAGGAAACGAGCGGTGTGGGCGCT
387 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCGCT
* * *
18250015 CAGCCGGCCAGAGGGGCGGGATGCGTAAGCC-GGGATCGAC-CAGGTCCCCCTCTGCATGCTGCC
451 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCC
* * * * * *
18250078 GATCATACTGCCACAACCTTCGGTCCGGTCTGATCGTAGACTGGGAATGAACTCCGTATACCTAA
516 GATCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
18250143 GCCAACCGACGAAACGAGCGGGTGGGTGGGCGGCCGGGCACTACGCCGGCCAGAGGGGCGAGATG
581 GCCAACCGACGAAACGAGC----GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
18250208 CGCAAG
642 CGCAAG
18250214 TTGGGGATTG
Statistics
Matches: 9088, Mismatches: 1098, Indels: 530
0.85 0.10 0.05
Matches are distributed among these distances:
855 166 0.02
856 6 0.00
857 2 0.00
858 1 0.00
859 5 0.00
860 1 0.00
861 1 0.00
862 32 0.00
863 468 0.05
864 83 0.01
865 5 0.00
866 9 0.00
867 102 0.01
868 5 0.00
869 7 0.00
870 2 0.00
871 5 0.00
872 4 0.00
873 9 0.00
874 49 0.01
875 250 0.03
876 277 0.03
877 8 0.00
878 3 0.00
879 5 0.00
880 14 0.00
881 309 0.03
882 229 0.03
883 5 0.00
884 1 0.00
885 3 0.00
886 5 0.00
887 45 0.00
888 6 0.00
889 211 0.02
890 742 0.08
891 552 0.06
892 440 0.05
893 184 0.02
894 342 0.04
895 272 0.03
896 160 0.02
897 634 0.07
898 577 0.06
899 1138 0.13
900 375 0.04
901 175 0.02
902 170 0.02
903 13 0.00
904 79 0.01
905 15 0.00
906 66 0.01
907 43 0.00
908 53 0.01
909 18 0.00
910 14 0.00
911 38 0.00
912 15 0.00
913 11 0.00
914 41 0.00
915 50 0.01
916 14 0.00
917 4 0.00
918 30 0.00
919 113 0.01
920 70 0.01
921 117 0.01
922 145 0.02
923 45 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
TCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
Found at i:18243761 original size:26 final size:26
Alignment explanation
Indices: 18243732--18243784 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
18243722 CTGGTCCGAT
18243732 CTTAAACTAGAAATGAACTCCGTATG
1 CTTAAACTAGAAATGAACTCCGTATG
* * * * *
18243758 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAAACTAGAAATGAACTCCGTATG
18243784 C
1 C
18243785 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGAAATGAACTCCGTATG
Found at i:18245525 original size:26 final size:26
Alignment explanation
Indices: 18245489--18245541 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18245479 CCGGTCCAAT
18245489 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* *
18245515 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
18245541 C
1 C
18245542 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:18247274 original size:26 final size:26
Alignment explanation
Indices: 18247234--18247286 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18247224 CCAATCCAAT
* *
18247234 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACCCCATATG
*
18247260 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGAAATGAACCCCATATG
18247286 C
1 C
18247287 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACCCCATATG
Found at i:18248171 original size:26 final size:26
Alignment explanation
Indices: 18248135--18248187 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18248125 CTGGTCTGAT
18248135 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGATTGAACTCCGTATG
*
18248161 CTTAGACTGGGATTGAACTTCGTATG
1 CTTAGACTGGGATTGAACTCCGTATG
18248187 C
1 C
18248188 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGATTGAACTCCGTATG
Found at i:18249106 original size:891 final size:894
Alignment explanation
Indices: 18246371--18250213 Score: 4918
Period size: 891 Copynumber: 4.3 Consensus size: 894
18246361 CGGTCCAATG
* * * *
18246371 TTAGATTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * *
18246436 GGCCAGAGAGGCGGGATGCGGAAGCCAGGGATCGACCTGGTCCCCCTTTGCATCCTGCCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCT
* * * * *
18246501 GCTGCCACAACCCTCTG-TCTGATCAGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAA
131 GCTACCACAACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18246565 CCGACGAAACGAGTGGGTGGGCGAGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAA
195 CCGACG-AGCGA--GCGT-GGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
18246630 GCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
18246695 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18246760 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTCTT-CGGTTCCAGATTTTTTAAAATTTTTT
382 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
*
18246824 CGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
447 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18246889 AAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
512 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18246954 AGACACTTTAATTGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
577 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
18247019 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
642 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18247084 CATGTGCGCACAGCCCCCCCGGCTCCCCCGATCATCGAAACCCCAATGCCGTCGGTTAGGTTCTC
706 CATGTGCGCACA-CCCCCCCGGC-CCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
18247149 CGGCGATACT-C--C----G-A--C--A--AAGAAAAATGCGGCACCAGCACGTGCCCGAACCTA
769 CGACGATGCTCCGGCGATGGTACCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
18247200 GCATGTG-TTGCTGCAACCCTCTGTCCAATCCAATCTTAGACTGGAAATGAACTCCGTATGC
834 GCATGTGCTGGC-GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18247261 TTAGACTGGGAATGAACCCCATATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
18247326 GGCCAGAGGGGCGGGATCCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGTTGCCAATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCT
* * * * * *
18247391 ACTATCC-TAACCCTCGGTCCGGTTCGACCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAA
131 GCTA-CCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * *
18247455 CCGATGAAAGGAGCGAGGCGGGTGGGCATGCGGGCATTACGCCGGCCAGAAAGACGGGATGCGCA
195 CC---G--ACGAGCGA-GC--GT-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
18247520 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
251 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
18247585 ATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
18247650 C-ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTT
381 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * * * * *
18247714 TGGGAAGGATTTTTGGCCCCAGAGTTGGTAGATGGGATCCTTGTATTTTTGTTGGCCTGCA-TAA
446 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
18247778 AAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTCAAAAAAGTGTCCCCATTT
511 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18247843 CAAACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
576 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
18247908 GTTCTCAAGGTTTGATGGGGGATA-GGGGCCAATATCAGGGCGAAGTACTAGCACCCATCGCACA
641 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
18247972 TCATGTGCGCACA-CCCCCCGGCCCCTTCGATAACCGGAAGCCCAATGCCGCCGATCAGGTTCTC
705 TCATGTGCGCACACCCCCCCGGCCCC-CCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
18248036 CGACGATGCTCCGGCGATGGTGCCCT-AGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCC
769 CGACGATGCTCCGGCGATGGTACCCTGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *** * * * * *
18248100 AACATGTGCTATTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGATTGAACTCCGTATGC
833 AGCATGTGCTGGCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18248162 TTAGACTGGGATTGAACTTCGTATGCCTAAGTCAACCCCAC-AGAACGAGCGTGCGAGCCCTTAG
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCCACGA-AACGAGCGTGCGGGCGCTCAG
* * * * *
18248226 CCGACCAGAGGGGCGGGATGCGCAAGCTGGGGAACGATCGGGTCCACCTCTGCGTGCTGCCGATC
64 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATC
* * * *
18248291 CTGCTACCACAACCCTCGGTTCGATCCTAACTTAGACTGGGAATGAACTCCGTATGCCTAAG-GA
129 CTGCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18248355 GACCGACGA-C-A-CGT-GCGGGCGGGCATTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTG
194 -ACCGACGAGCGAGCGTGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * **
18248416 GATCAATAGGGTGGTAAGTGGGTCTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
* * * *
18248481 CGGCCTGTAAATTCATAAAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATCG-CTC
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-CGACTC
* * *
18248545 ATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTC-AA
387 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCGGA
* *
18248609 AGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAAT
451 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
18248674 TGAGCTAAAAACTTGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCGCATTTCAGAC
516 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
18248739 ACCTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
18248804 TGAGGTTTGATGAGGGATAGGGGGCCAATGA-AGGGCTAAGTACCAGCACCC-TCGCACATCATG
646 CGAGGTTTGATGAGGGATAGGGGGCCAAT-ATAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * **
18248867 TGCGCACACTCCCCCCAGCCCCCACGATCGTTGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGT
710 TGCGCACAC-CCCCCCGGCCCCC-CGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* ** *
18248932 GATGCTCCAGCGATGGTACCCTGACGAAGAAAAATGCAACACCAGCACATGCCCGAGCCCAGTAT
773 GATGCTCCGGCGATGGTACCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
18248997 GTGCTGGCACAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGGACTCCATATGC
838 GTGCTGGCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18249054 TTGGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
18249119 GCCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCT
* * *
18249184 GCTACCCCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAT
131 GCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
18249249 TGACAAAACGAGCGGGTGGGCAGGTGGGCACTACACCGGCCAGAGAGACGGAATGCGCAAGCCGT
196 CGAC-GAGCGAGC--GT-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
18249314 GGATCGATAGGGTTGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTT
257 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
*
18249379 ATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
322 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
18249444 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTCTTCGGAA
387 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* *
18249509 GGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTT-TTGGCATGCAAAAAAAAATT
452 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * * *
18249573 CAGCTAGAAACTCAAAGTGTACAATATTTTGTAACCATTTGAAAAAAGTGTCACCATTTCAGACA
517 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
18249638 CTTTAATGGCTACTGGCAGTC-AACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCT
582 CTTTAATGGCTACTGGCAG-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
18249702 CGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAACTACCAGC-CCTCATCGCACATCTT
646 CGAGGTTTGATGAGGGATAGGGGGCCAATATA-GGGCCAAGTACCAGCACC-CATCGCACATCAT
* * * * * *
18249766 CTGTGCATACCGCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTTAGGTTCTCCGA
709 GTGCGCACACC-CCCCCGG-CCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * ** *
18249831 CGATGCTTCGACGATGGTGCCCTGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
772 CGATGCTCCGGCGATGGTACCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* ** *
18249896 TGTGCTGTCGTTACCCTCTGTCC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
837 TGTGCTGGCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18249954 TGAGACTGGGAATGAACTCCGTATGCCCAAGTCAAACCAGGAAACGAGCGGTGTGGGCGCTCAGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCGCTCAGC
* * * *
18250019 CGGCCAGAGGGGCGGGATGCGTAAGCC-GGGATCGACCAGGTCCCCCTCTGCATGCTGCCGATCA
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
* * * * * * *
18250083 TACTGCCACAACCTTCGGTCCGGTCTGATCGTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
130 TGCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18250148 CCGACGAAACGAGCGGGTGGGTGGGCGGCCGGGCACTACGCCGGCCAGAGGGGCGAGATGCGCAA
195 CCGACG-AGCGAGC------GT-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
18250213 G
252 G
18250214 TTGGGGATTG
Statistics
Matches: 2551, Mismatches: 336, Indels: 118
0.85 0.11 0.04
Matches are distributed among these distances:
886 3 0.00
887 47 0.02
888 1 0.00
889 206 0.08
890 467 0.18
891 547 0.21
892 187 0.07
893 6 0.00
894 6 0.00
895 10 0.00
896 1 0.00
897 7 0.00
898 173 0.07
899 265 0.10
900 300 0.12
901 152 0.06
902 133 0.05
904 40 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCT
GCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAGCGAGCGTGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCCGGCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
GGCGATGGTACCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGGC
GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
Found at i:18249959 original size:26 final size:26
Alignment explanation
Indices: 18249930--18249979 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
18249920 GTCCGATCTT
18249930 AGACTGGGAATGAACTCCGTATGCTG
1 AGACTGGGAATGAACTCCGTATGCTG
18249956 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
18249980 CCAAGTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTG
Found at i:18250301 original size:171 final size:170
Alignment explanation
Indices: 18250017--18250344 Score: 449
Period size: 171 Copynumber: 1.9 Consensus size: 170
18250007 TGGGCGCTCA
* *
18250017 GCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGATCGACCAGGTCCCCCTCTGCATGCTGCCGATC
1 GCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGATCGACCAGGTCCCCCTCTGCATGCTGCCGATC
* * *
18250082 ATACTGCCACAACCTTCGGTCCGGTCTGATCGTAGACTGGGAATGAACTCCGTATACCTAAGCCA
66 ATACTACCACAACCCTCGGTCCAGTCTGATCGTAGACTGGGAATGAACTCCGTATACCTAAGCCA
* *
18250147 ACCGACGAAACGAGCGGGTGGGTGGGCGGCCGGGCACTAC
131 ACCGACGAAACGAGCGGGCGGGCGGGCGGCCGGGCACTAC
** * * * * *
18250187 GCCGGCCAGAGGGGCGAGATGCGCAAGTTGGGGATTGGCCGGGTCCCCCTCTGCGTGCTGTCGAT
1 GCCGGCCAGAGGGGCGAGATGCGCAAG-CCGGGATCGACCAGGTCCCCCTCTGCATGCTGCCGAT
* * * * * * * *
18250252 CCTGCTACCATAACCCTCGGTTCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTTAGCC
65 CATACTACCACAACCCTCGGTCCAGTCTGATCGTAGACTGGGAATGAACTCCGTATACCTAAGCC
18250317 AACCGACGAAACGAGCGGGCGGGCGGGC
130 AACCGACGAAACGAGCGGGCGGGCGGGC
18250345 ACTACGCCGG
Statistics
Matches: 135, Mismatches: 22, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
170 25 0.19
171 110 0.81
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.18
Consensus pattern (170 bp):
GCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGATCGACCAGGTCCCCCTCTGCATGCTGCCGATC
ATACTACCACAACCCTCGGTCCAGTCTGATCGTAGACTGGGAATGAACTCCGTATACCTAAGCCA
ACCGACGAAACGAGCGGGCGGGCGGGCGGCCGGGCACTAC
Found at i:18251023 original size:26 final size:26
Alignment explanation
Indices: 18250994--18251046 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18250984 CTGGTCCGAT
18250994 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
18251020 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
18251046 C
1 C
18251047 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:18251924 original size:26 final size:26
Alignment explanation
Indices: 18251895--18251947 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18251885 CCGATCCGAT
*
18251895 CTTAGATTGAGAAAGAACTCCGTATG
1 CTTAGACTGAGAAAGAACTCCGTATG
* * *
18251921 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGAGAAAGAACTCCGTATG
18251947 C
1 C
18251948 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAAAGAACTCCGTATG
Found at i:18252690 original size:898 final size:895
Alignment explanation
Indices: 18250187--18253042 Score: 4032
Period size: 898 Copynumber: 3.2 Consensus size: 895
18250177 CGGGCACTAC
* * * * *
18250187 GCCGGCCAGAGGGGCGAGATGCGCAAGTTGGGGATTGGCCGGGTCCCCCTCTGCGTGCTGTCGAT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGAT
** * * *
18250252 CCTGCTACCATAACCCTCGGT-TCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTTAGC
66 CCTGCTACCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
18250316 CAACCGACGAAACGA----GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
130 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
18250377 CCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTATGTGCCAATGCCAT
195 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGTGCCAATGCCAT
* * * *
18250442 TTTTATGGCTTGTAAATACAAACAATGGTCCCTTAAGCCCTCACTTGAAGTTTCATGGCAAGACG
258 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
18250507 ACTTGTTTTCTATTTTTCATGATCTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTC
323 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
18250572 GGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAGCCTTTTATTTTTGTTGGCATGCACAAAAA
388 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
18250637 AATTCAGCTAAAAACTTC-AAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
453 AATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
18250701 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
517 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
18250766 TTCTCAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACGT
582 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
18250831 CATGTGTGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG-CTAGTCAGGTTCTC
647 CATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTC
* * * * *
18250895 AGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCTCA
709 -CGCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
18250960 GCATGTGCTGCCGTAACTCTCGATCTGGTCCGATCTTAGACTGGGAACGAACTCCGTATGCTTAG
773 GCATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAG
** *
18251025 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACAAGCGTGCGGGCGCTCA
838 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
18251083 GCCGGCTAGAGGGACGGCATGCGCAAGCCGGGGA-CTGCCCGGGTCCCCCTCTACGTGCTGCCAA
1 GCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATC-GACCGGGTCCCCCTCTGCGTGCTGCCGA
** * * * * *
18251147 TCCTGCTGTCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGACTAAGC
65 TCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
18251212 CAACCGATGAAAGGAGTGGGCGGGCGGGCAGGCAGGCACAATGCCGACCAGAGAGACGGGATGTG
130 CAACCGACGAAACGAGCGGGCGGGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCG
* *
18251277 CAAGTCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATG
191 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGTGCCAATG
* **
18251342 CCATTTTTTTGGCTTGTAAATTCATA-AATGGTCCCCGAAGCCTTCACGTGAAG-TTCAATGGCA
254 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCA
* * * * ** * ** *
18251405 AGGCGAATCATTTTCTATTTTTCACGATTTTCAAAAATTTTTGTGGTTCAGGATTTTTTAAAATT
318 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
** * * *
18251470 TTTTCAAAAGGAGTTTTGGCCCCAAGCTTCGTAGACATGATCCTTGTATTTTT-TATGGCATGCA
383 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCA
*
18251534 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
447 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
18251599 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGT
512 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
18251663 GTGAGTTCCCGAGGTTTGATGAGGGATAGGTGGG-CAATATAAGGGCCAAGTACCAGCACCCATC
577 GTGAGTTCTCAAGGTTTGATGAGGGATAGG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATC
*
18251727 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGT
641 GCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* *
18251792 TCTCCGCTGATGCTTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAG
705 TCTCCGC-GATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
18251857 CCCAGCATGTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGATTGAGAAAGAACTCCGTATGC
769 CCCAGCATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGC
* * * *
18251922 TTAGACTGGGAATGAGCTCCGTATGCCTAAGTTAACACACGAAACGAGCGTGCGGGTGCTCA
834 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
18251984 GCCAGCCAAAGGGGCGGGATGCGCAAGCTGAGGATCGGCCAGGTCCCCCTCTGCTTGCTACCGAT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGAT
*
18252049 CTTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
66 CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18252114 AACCGATGGAACGAGCGGGCAGGCGGGCGGGCTCTACGCCGGCCAGAGAGACGGGATGCGCAAGC
131 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
18252179 CGTGTATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATT
196 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG--TGCCAATGCCATT
* *
18252244 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGTAAGACGA
259 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
18252309 CTTGTTTTCTATTTTCCATTATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
324 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
18252374 GTAGGAGTTTTGGCCCCAAACTTGGTAGATGTGAGCCTTGTATTTTTGTTGGCATGCACAAAAAA
389 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
18252439 CTTCAGCTAAAAACTTC-AAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
454 ATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
18252503 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
518 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18252568 TCTCAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
583 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
18252633 ATGTGTGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCG-CTGGTCAGGTTCTCAGG
648 ATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTC-CG
* * *
18252697 TGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCA
711 CGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
** * * * *
18252762 TGTGCTGCCTTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT
776 TGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACT
* * * *
18252827 GGGAATGAACTCCGTATGCCTAAGTCAACCTAGGAAACGAGCGGGTGGGCGCTCA
841 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
18252882 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCATGCTGCCGAT
1 GCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGAT
* * ** * * * *
18252947 CATGCTACCGTAACCCTCGGTCCAGTCTGATCATAAACTAGGAATGAACTCCGTATGCCTAAACC
66 CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
*
18253012 AACCGACGAAACGAGCGGGTGGGCGGGCGGG
131 AACCGACGAAACGAGCGGGCGGGCGGGCGGG
18253043 TGGGCACTTC
Statistics
Matches: 1732, Mismatches: 201, Indels: 52
0.87 0.10 0.03
Matches are distributed among these distances:
895 2 0.00
896 120 0.07
897 108 0.06
898 597 0.34
899 95 0.05
900 12 0.01
901 341 0.20
902 86 0.05
903 258 0.15
904 113 0.07
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (895 bp):
GCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGAT
CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCGATG
CTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
Found at i:18252829 original size:26 final size:26
Alignment explanation
Indices: 18252793--18252845 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18252783 CTGGTCCGAT
*
18252793 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18252819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18252845 C
1 C
18252846 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18253205 original size:4 final size:4
Alignment explanation
Indices: 18253196--18253225 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
18253186 TATGAAAAGA
*
18253196 GCGG GCGG GCGG GCGG ACGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
18253226 ACTACGTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.27, G:0.70, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:18253909 original size:26 final size:26
Alignment explanation
Indices: 18253873--18253925 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18253863 CTGGTCCGAT
*
18253873 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18253899 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18253925 C
1 C
18253926 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18255241 original size:899 final size:899
Alignment explanation
Indices: 18253058--18262396 Score: 8885
Period size: 900 Copynumber: 10.2 Consensus size: 899
18253048 ACTTCGTCGC
* * * **
18253058 CCAGAGGGGCGGGATACGCAAGCTGGGGATTG-CCTGGGTCCCCCTCTGCGTGCTGTTGATCTTG
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC-GGGTCCCCCTCTGCGTGCTGCCGATCTTG
* * * *
18253122 CTACCGTAA-CCTCAGTCTGGTCTGATCTTAGA-TGGGGAATGAACTCCGTATGCCTAAGCCAAC
65 CTGCCGCAACCCTCAGTCCGGTCAGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
18253185 CTATGAAAAGAGCGGGCGGGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
129 CGACGAAACGAGCGGGCGGGCGGGC--A-------GC-GGCACTACGCCGGCCAGAGAGACGGGA
* * ** * *
18253250 TGTGCAAGCCGTGGATCGATAGCGTCATAGGTGGGTTTAGGCACATCTTCAAATTTCTGCGTGCC
184 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
*
18253315 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATG
249 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
18253380 GTAAGACGACTCGTTTTCTATTTTCCATTATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
314 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA
* * * * *
18253445 ATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGATGTGAGCCTTGTATTTTTGTTGGCATG
379 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
* **
18253510 CACAAAAAACTTCAGCTAAAAACTTC-AAGTCCACAAGATTTTGTGACCATTTGAAAAAAGTGTC
444 CACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
18253574 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
508 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
18253639 GGTGTGAGTTCTCAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
573 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
18253704 TCGCACATCATGTGTGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCG-CTGGTCAG
638 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG-CGGAACCCCAATGCCGTC-GATCAG
* ** * *
18253768 GTTCTCAGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCA
701 GTTCTCCGACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
** * * *
18253833 AGCCCAGCATGTGCTGCCTTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTAT
766 AGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTAT
* **
18253898 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAG
831 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
*
18253963 TCGG
896 CCGG
* * * * * * *
18253967 CTAGAGGGACGGGATGCGCAAGCCGGGGATCGCCCGGGTCCCCCTCTACGTGCTGCCAATCCTAC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCTTGC
* * * * * *
18254032 TGCCGTAACCCTCGGTCCGATCTGATCTTAGACCGGGAATGAACTCCGTATGACTAAGCCAACCG
66 TGCCGCAACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
18254097 ACGAAAGGAGCGGGCGGGCGGGCAGGCAGGCACAACGCCTGCCAGAGAGACGAGATGCGCAAGCC
131 ACGAAACGAGCGGGCGGGCGGGCA-GC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
18254162 GTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
194 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* * *
18254227 TTTTGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAG-TTCAATGGCAAGGCGA
259 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGACGA
* * ** * * * *
18254291 ATCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTGTGGTTTGAGATTTTTTAAATTTTTTTCA
323 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCA
** * **
18254356 GAAGGAGTTTTGGCCCCAAACTTCATAGAGGTGATCCTTCCATTTTTTTTGGCATGCACAAAAAA
388 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
*
18254421 AATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
453 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18254486 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAA-GGGGAGTGAGTT
518 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18254550 CCCGAGGTTTGATGAGGGATAGGTTGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
583 CTCAAGGTTTGATGAGGGATAGG--GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
18254614 CATGTGCGCACACCCCACGGCCCCCCGATTGCCGAAACCCAATGCCGTCGATCCAGGTTCTCCGA
646 CATGTGCGCACACCCCCCGGCCCCCCGATCGCGGAACCCCAATGCCGTCGAT-CAGGTTCTCCGA
* *
18254679 CGATGCTTCGACGACGGTGCCCCGAC-AAGAAAAATGCGGCACCAGCACAATGCTCGAG-CCAGC
710 CGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC-ATGCCCGAGCCCAGC
* ** * * *
18254742 A-GTGCTGCCACAAGCCTCGGTCCAGTACGATCTTAGACCAGGAATGAACTCCGTACGCTTAGAC
774 ATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
* * *
18254806 TGGGAAT-AGACTCTGTATGCCTAAGTCAACCCACGACACAAGCGTGCGGGCGCTCAACCGG
839 TGGGAATGA-ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGG
** * * * ** *
18254867 CCAGAGGGGCGGGATGCAAAAGTC-GGGATCAACCGGGTCCCCCTCTACGTGCTGTTGATCTTAC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCTTGC
*** * * * *
18254931 TGCTATAACCCTCAATCCGATCAGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTG
66 TGCCGCAACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * *
18254996 ACGAAACGAGCGGGCGGTCGGGCAGACGGACACTACACCGGCCAGAGAGACAGGCTGCGTAAGTC
131 ACGAAACGAGCGGGCGGGCGGGCAG-CGG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18255061 GTTGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAAGCCATTT
194 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* *
18255126 TTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGAC
259 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
18255191 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTGA-
324 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG
* * * *
18255255 AAGGAGTTTTCGCCCCAAACATGGTAGATGTGATCCTTGTATTTTTTTTGTCATGCACAAAAAAA
389 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
** * *
18255320 TTCAGCGGAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGA
454 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
18255385 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
519 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
18255450 TCAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATAAT
584 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * *
18255515 GTGTGCACACCCCTCTGGCCCCTTCGATCATCGGAAGCCCAATGCCGCCGATTAGGTTCTCCGAC
649 GTGCGCACACCCC-CCGGCCCC-CCGATC-GCGGAACCCCAATGCCGTCGATCAGGTTCTCCGAC
* ** * *
18255580 GATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCA
711 GATGCTTCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* ** * *
18255644 TGTGCTACTGCAACCTTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
775 TGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * * * *
18255709 GGGATTGAACTCCGTATGCCTAAGTCAACCCCAC-AGAACGAGCGTGCGAGCGCTTAGCCGA
840 GGGAATGAACTCCGTATGCCTAAGTCAA-CCCACGA-AACAAGCGTGCGGGCGCTCAGCCGG
* * * * * *
18255770 CCAGAGGGGCGGGATGCGCAAGTCAGGGAACGATCGGGTCCACCTCTGCGTGCTGCCGATCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCTTGC
* * * * * ** * **
18255835 TACCACAACCCTCGGTTCGTTCCTAACTTAGACTGGGAATGAACTCCGTATGCCTAAGGTAACCG
66 TGCCGCAACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
18255900 ACG-AA--A---TGC--GTGGGC-G-GGCATTACGTCGACCAGAGAGACGGGATGCGCAAGCCGT
131 ACGAAACGAGCGGGCGGGCGGGCAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
18255955 GGATCAATAAGCTGGTAAGTGGGTCTT-GGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
196 GGATCGATAGGGTGGTAGGTGGGT-TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* * * *
18256019 TACGGCCTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTGTCATGGCAAGATC-AC
260 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-CGAC
** * * **
18256083 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTTGG
324 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG
* * *
18256148 AAGGGGTTTTGGCCCCAAATTTGGTAGACGTGA-CCTTGTATTTTTATTGGCATGCACAAAAAAA
389 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* * *
18256212 TTGAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTG-AAAAAGTGTCCCCATTTCAGT
454 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
** * * *
18256276 CACCATAATAGCTACAGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
519 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
18256341 TCCAGGTTTTATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCAT
584 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * * *
18256406 GTGCGCACACTCCCCCCGGCCCCTATGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGG
649 GTGCGCACA--CCCCCCGGCCCC-CCGATCG-CGGAACCCCAATGCCGTCGATCAGGTTCTCCGA
* * * * * *
18256471 TGATGC-TCCAGCGATGGTACCCCGACAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGT
710 CGATGCTTCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* ** * *
18256535 ATGTGCTGCCACAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
774 ATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
18256600 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGG
839 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGG
* * * **
18256661 CCAGAGGGGTGGGATGCACAAGCCGGGGATCGACCGGGTCCTCCTCTGCGTGCTATCGATCTTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCTTGC
* ** ** * *
18256726 TGCCCCAACCCTTGGTTTGGTCTA-ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACT
66 TGCCGCAACCCTCAGTCCGGTC-AGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
18256790 GACAAAACGAGCGGGTGGGCGGGC-G-GGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
130 GACGAAACGAGCGGGCGGGCGGGCAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
18256853 TGGATCGATAGGGTTGTAGGTGGGTTTAGGCACACCTTCATATTTCTGCATGCCAATGCCATTTT
195 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
*
18256918 TATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
260 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
18256983 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTCTTC-GA
325 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-
* * *
18257047 AAGGAGTTTTGGCCCCAAAC-TGGTAGACGTAATCCTTGTATCTTTTTTGGCATGCAAAAAAAAA
389 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* * * *
18257111 TTCAGCTAGAAACTCGAAGTGTACAATATTTTGTAACCATTTGAAAAAAGTGTCACCATTTCAGA
454 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18257176 CACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTC
519 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18257241 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-CCTCATCGCACATCT
584 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC-CATCGCACATCA
* *
18257305 TGTGCGCATATCACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-AGTCAGGTTCTCT
648 TGTGCGCACA-C-CCCCCGG-CCCCCCGATCG-CGGAACCCCAATGCCGTCGA-TCAGGTTCTCC
* ** * *
18257369 GACGATGCTTCGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACAAGCCCGAGCCCAG
708 GACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * ** *
18257434 CATGTGCTGTCGCAACCCTCTGTCCAGTCCGATCTTAGACT-GCGAATGAACTCCGTATGCTGAG
773 CATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAG-GAATGAACTCCGTATGCTTAG
* * * *
18257498 ACTGGGAATAAACTCCGTATGCCCTAAGTCAACCCAAGAAACGAA-CG-GATGGGCAACTCAGCC
837 ACTGGGAATGAACTCCGTATG-CCTAAGTCAACCCACGAAAC-AAGCGTG-CGGGC-GCTCAGCC
*
18257561 AG
898 GG
* * * *
18257563 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCCTCTGCATGCTACCGATCATG
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGT-CCCCCTCTGCGTGCTGCCGATCTTG
* *
18257628 CTGCCGCAACCCTCAGTCCGGTCTA-ATCATAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
65 CTGCCGCAACCCTCAGTCCGGTC-AGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
18257692 CGACGAAACGAGCGGGTGGGTGGGCGGGCGTCACTACGCCAGCCAAAGGGGCGGGTATGCGCAAG
129 CGACGAAACGAGCGGGCGGGCGGGC-AGCGGCACTACGCCGGCCAGAGAGACGGG-ATGCGCAAG
* * * ** ** * * ***
18257757 CTGGGGATTGGCCA-GGTCCCCTCTGCGTGCTGTCAATCCTGCTACATAACCCTTGGTTCGAT-T
192 CCGTGGA-TCGATAGGGT--GGT-AG-GTG-GGT---TTAGGC-ACAT----C----TTC-ATAT
* * *** * * * *** * * * *
18257820 TGATCT-CAGACTAG-GAATG-AACTCCGTATGCCTAAGCCAACCGCGAAAAAAGCGCGGGCGGG
238 T--TCTAC-G--T-GCCAATGCCA-TTTTTATGGCT-TG-TAAATTC-ATACAA---TGGTC---
* ** *** ** * * * *** * **
18257882 CGGACGTCGGCGAGCTACGTCGGCCAGAG-AACGGATGCGCAAGCCG--TGGATGGATAGCGTGG
287 C---CTTAAGCCTTC-ACGT--G--A-AGTTTC--ATG-GCAAGACGACTCGTTTTCTA--TTTT
* ** * * * * * ** *** ** *
18257944 TAAGTGGGTTTGGCATCTTCAAATTT-CTACGTGCAATGCCATTTTTTATGCTGTAAATTCATAC
338 TCA-TGATTTTTGAAACTT----TTTGC--GGTTC---GGGATTTTTTAAAAT-T-TTTTCAGA-
** * * * * **** * ** ***
18258008 A--AGTCTTAAGCCTTC--ACTT-GAAG-CATGGTAAGAGGAGTTTTCATTTTTCCATG-ATTTT
390 AGGAGT-TTTGGCC-CCAAACTTGGTAGACGTGATCCTTGTA-TTTT--TTTTGGCATGCA-CAA
** * * **** * * * * ** **
18258066 TGAAATT---TTTACGGTTCGGGATTTTA-AA-ATTTT-TAGTAGCAGTTTTGGCCCCAAACTTG
449 AAAAATTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGT-G-ACCA--TTT-G--AAAAAAGT-
** * * * * ** * * ** * *
18258125 GT--AGATGTGAGCCTTGTATTTTTGTTGGC-ATTGCACATAAAAACTTAGCTAAAACTTCAGGC
505 GTCCCCATTTCAGAC----A-CTTTAATGGCTACTG-GCA-GCAAACCT-G-TAAAA--TC--TC
*** *** ** * * * * *** **
18258187 ACAAGTTTGAC-CATTTGAA-AATGTCCCA-TTCAGACA-CTTATGCTTACTGGGCAAACCTGTA
557 A-AA---TG-CTC-TTT-AAGGGGGTGTGAGTTCTCA-AGGTT-TGATGA--GGG-ATAGGGGGC
* * ** *** ** * * * * *
18258248 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG-A-ATGGGGGATAAGGGGGCC
610 CAATAT-AAGGGC-C---AA----GTACCAGCAC-CCA---TCGCACAT----CAT--GTGCG-C
* ** ** * ** * * * *** *
18258311 AATATAAGGGCCAAGTACCAGCACCC-ATCGC---ACATCATGTGTGCATACCCCCCGG--C-CC
655 ---A-CA-CCCCCCG-GCC--C-CCCGATCGCGGAACCCCA-ATG-CCGT-CGATCAGGTTCTCC
** * * ** * * * **** * *
18258369 CCCGAT-CATCGGAAC-CTCAATGCCGCTGGTC-AGGTTCTTAGGCGATGCTCC-G-ACAATGGT
708 GACGATGCTTC-G-ACGAT-GGTGCC-C-CGACGAAG-AAAAATGCG--GCACCAGCAC-A---T
* * ** * *
18258429 GCCCCGATG--AAGAAAAATGCGGCACCAGCACATGCCCAAGCTCAGCATGTGCTGCCGCAACCC
761 G-CCCGA-GCCCAG-CATGTGCTG--CCA-CA-A---CC---CTC-G---GT-CTG--G---TCC
* * * * *
18258492 TTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAACGAACTCTGTA
803 --GATCT--T-AGA-C-TAG-G----AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
** * *
18258557 TGCCTAAGTCAACCCATAAAACAAGCGTGCGTGCGCTCAGCTGG
856 TGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGG
* * * * * ** * *
18258601 CTAGAGGGACGGCATGAGCAAGCCAGGGATCG-CCTGGGTCCCCCTCTATGTGCTGCCAATCCTG
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC-GGGTCCCCCTCTGCGTGCTGCCGATCTTG
* * * *
18258665 CTGCCGTAACCCTC-GATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAAC
65 CTGCCGCAACCCTCAG-TCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
18258729 CGACGAAACGAGCGGGCGGGCGGGCAGTCAGGCACAATGCCGGCCAGAGAGACGGGATGCGCAAG
129 CGACGAAACGAGCGGGCGGGCGGGCAG-C-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
18258794 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
192 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * *
18258859 TTTTTTGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAG-TTCAATGGCAAGGC
257 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGAC
* * *
18258923 GAATCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTT
321 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * *
18258988 CGGAAGGATTTTTGGCCCCAAACTTCGTAGACGTGATCC-TATATTTTTTTTGGCATGCACAAAA
386 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
18259052 AAATT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
451 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
18259116 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
516 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
18259180 TTCCCGAGGTTTGATGAGGGATAGGTGGG-CAATATAAGGGCTAAGTACCAGCACCCATCGCACA
581 TTCTCAAGGTTTGATGAGGGATAGG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
18259244 TCATGTGCGCACACCCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCG
645 TCATGTGCGCACACCCCCCGGCCCCCCGATCG-CGGAACCCCAATGCCGTCGATCAGGTTCTCCG
* * *
18259309 GCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAGATGCCCGTGCCCAGC
709 ACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * * * * *
18259374 ATGTGCTGTCGCAACCCTCGATCTGATTCGATCTTAGATTGGGAAAGAACTCCGTATGCTTAGAC
774 ATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
* * **
18259439 TGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTTGG
839 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGG
* ** * * * * ** *
18259500 CTAGAGGGGCGGGATGCAAAAGTCGAGGATC-AGCCAGGTCCCCCTCTACGTGCTATCGATCTTA
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCGTGCTGCCGATCTTG
*** * *
18259564 CTATTGTAACCCTC-GATCCGGTCAGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
65 CTGCCGCAACCCTCAG-TCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
18259628 CGACGAAACGAGCGGGCGGTCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
129 CGACGAAACGAGCGGGCGGGCGGGCAG-C-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
** * *
18259693 TTGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
192 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
*
18259758 TTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
257 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** * * * *
18259823 ACTCGTTTTGTATTTTTCACAATTTTTGAAAGTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTG
322 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* ** * *
18259888 A-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTATCTTGCATAAAAA
387 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
** * *
18259952 AATTCAGCGGAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCA
452 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
18260017 GACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
517 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
18260082 TCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATC
582 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * * *
18260147 ATGTCCGCACA--CCCCTGCCCCCTCGATCACCGGAAGCCCATTGTCGCCGATCAGGTTCTCCGG
647 ATGTGCGCACACCCCCCGGCCCCC-CGATC-GCGGAACCCCAATGCCGTCGATCAGGTTCTCCGA
* * * *
18260210 CGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCA
710 CGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* ** * *
18260275 TGTGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
775 TGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * * * * *
18260340 AGGATTGAACTCCGTATGCCTAAGTCACCCCAC-AGAACGAGCGTGCGAGCGCTTAGCCGG
840 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACAAGCGTGCGGGCGCTCAGCCGG
* * * * ** * * *
18260400 CCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATCGGGTCCACCTCTATGTGCTGCCAATCCTAC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCTTGC
* * * ** ** * *
18260465 TACCACAACCCTCGGTTTGGTCCTAACTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCG
66 TGCCGCAACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * **
18260530 ACGAAACGCGCGGGCGGGCAGGCAGGCGGGCATTACGTCTACCAGAGAGACGGGATGCGCAAGCC
131 ACGAAACGAGCGGGCGGGCGGGCA-GC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18260595 GTGGATCGATAGGGTGGTAAGTGGGTCTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTT
194 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
** * *
18260660 TTACAGCCTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATC-A
259 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-CGA
** ** * *
18260724 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTAAAAATTTTTT-G
323 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCA
* * *
18260788 GAAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAA
388 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* *
18260853 ATTGAGCTAAAAAATCGAAGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCCATTTCAG
453 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
18260917 ACACCTTGATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
518 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18260982 CTCAAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCAATCGCACATCA
583 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
18261047 TGTGTGCACACTCCCCCCGGCCCCCATGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCG
648 TGTGCGCACA--CCCCCCGGCCCCC-CGATCG-CGGAACCCCAATGCCGTCGATCAGGTTCTCCG
** * *
18261112 GTGATGC-TCCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
709 ACGATGCTTCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
18261176 TATGTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
773 CATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
*
18261241 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
838 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGG
* * * * * *
18261303 CCAAAGGGGTGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCCTCTGCATGCTACCGATCCTG
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGT-CCCCCTCTGCGTGCTGCCGATCTTG
* * *** * *
18261368 CTG-CGCCAGCCCTCGGTTTTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAAC
65 CTGCCG-CAACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
18261432 TGACAAAACGAGCGGACGGGCGGGCA--GGCACTACACCGACCAGAGAGACAGGATGCGCAAGCC
129 CGACGAAACGAGCGGGCGGGCGGGCAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18261495 GTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
194 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* *
18261560 TTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
259 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** * * * *
18261625 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTCTTCGG
324 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG
* * * * * *
18261690 AAGGAGTTTTGGCACCAAACTTGGTAGACGTAATTCTTTTATTTTTGTTGGCATGCAAAAAAAAA
389 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* * * *
18261755 TTCAGCTAGAAACTCGAAGTGTACAATATTTTGTAACCATTTGAAAAAAGTGTCACCATTTCAGA
454 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
18261820 CACTTTAATGGCTACTGGCAGTAAACCCGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
519 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
18261885 TCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGC-CCTCATCGCACATCT
584 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC-CATCGCACATCA
* * * * * *
18261949 TATGCGCATATCGCCCCGACCCCCCGATCGCCGAAACCCCAATGCCG-CCAGTCAGGTTCTCCGA
648 TGTGCGCACA-CCCCCCGGCCCCCCGATCG-CGGAACCCCAATGCCGTCGA-TCAGGTTCTCCGA
* * ** * *
18262013 CGATGCTTCGGCGATGGTGCCTCGGTGAAGAAAAATGTGGCCCCAGCACATGCCCGAGCCCAGCA
710 CGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * * * *
18262078 TGTGCTGTCGCAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTGAGATT
775 TGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * * * * *
18262143 GGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGGGTGGGTGGTCAGCCGG
840 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGG
* * * *
18262203 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGTTACCGATCATGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCTTGC
* * *
18262268 TGCCGCAACCCTCGGTCCGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
66 TGCCGCAACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * *
18262333 ACGAAACGAGCGAGTTG-GTGGACGGGC-G-GGCACTACGTCGGCCAGAGGGGCGGGATGCGCAA
131 ACGAAACGAGCG-G--GCG-GG-CGGGCAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
18262395 GC
191 GC
18262397 TGGGGATTGG
Statistics
Matches: 6883, Mismatches: 1210, Indels: 680
0.78 0.14 0.08
Matches are distributed among these distances:
891 283 0.04
892 438 0.06
893 38 0.01
894 1 0.00
895 1 0.00
896 4 0.00
897 4 0.00
898 270 0.04
899 1337 0.19
900 1644 0.24
901 344 0.05
902 752 0.11
903 430 0.06
904 181 0.03
905 1 0.00
906 22 0.00
907 18 0.00
908 4 0.00
909 63 0.01
910 73 0.01
911 4 0.00
912 2 0.00
915 3 0.00
916 6 0.00
917 1 0.00
920 2 0.00
921 3 0.00
924 7 0.00
925 3 0.00
926 3 0.00
927 2 0.00
928 14 0.00
929 3 0.00
930 5 0.00
931 13 0.00
932 4 0.00
934 10 0.00
935 7 0.00
936 12 0.00
937 7 0.00
938 12 0.00
939 13 0.00
940 9 0.00
941 4 0.00
943 2 0.00
944 3 0.00
945 2 0.00
946 9 0.00
947 3 0.00
948 12 0.00
949 10 0.00
950 2 0.00
951 2 0.00
952 6 0.00
953 3 0.00
954 3 0.00
955 1 0.00
956 7 0.00
957 22 0.00
958 17 0.00
959 14 0.00
960 20 0.00
961 12 0.00
962 8 0.00
963 2 0.00
964 10 0.00
965 13 0.00
966 12 0.00
967 5 0.00
968 1 0.00
969 7 0.00
970 2 0.00
971 2 0.00
972 2 0.00
973 2 0.00
974 7 0.00
975 1 0.00
976 5 0.00
977 16 0.00
978 16 0.00
979 2 0.00
980 5 0.00
981 11 0.00
982 10 0.00
983 2 0.00
984 18 0.00
985 15 0.00
986 22 0.00
987 20 0.00
988 5 0.00
990 7 0.00
991 5 0.00
992 3 0.00
993 1 0.00
994 2 0.00
995 10 0.00
996 11 0.00
997 3 0.00
998 11 0.00
999 5 0.00
1000 11 0.00
1001 9 0.00
1002 11 0.00
1003 16 0.00
1004 12 0.00
1005 7 0.00
1007 4 0.00
1008 10 0.00
1009 1 0.00
1010 4 0.00
1011 2 0.00
1012 1 0.00
1013 4 0.00
1014 3 0.00
1015 4 0.00
1016 11 0.00
1017 1 0.00
1018 7 0.00
1019 2 0.00
1020 5 0.00
1022 2 0.00
1023 1 0.00
1024 304 0.04
1025 222 0.03
1026 231 0.03
1027 565 0.08
1028 1618 0.24
1029 222 0.03
1030 279 0.04
1031 227 0.03
1032 305 0.04
1033 274 0.04
1034 168 0.02
1035 146 0.02
1036 157 0.02
1037 357 0.05
1038 216 0.03
1039 137 0.02
1040 140 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCTTGC
TGCCGCAACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGCGGGCAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGC
TTCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGG
Found at i:18255717 original size:26 final size:26
Alignment explanation
Indices: 18255675--18255727 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18255665 CTGGTCTGAT
18255675 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18255701 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18255727 C
1 C
18255728 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18256603 original size:26 final size:26
Alignment explanation
Indices: 18256567--18256619 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18256557 CTGGTTTGAT
18256567 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18256593 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18256619 C
1 C
18256620 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18257499 original size:26 final size:26
Alignment explanation
Indices: 18257470--18257519 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18257460 GTCCGATCTT
*
18257470 AGACTGCGAATGAACTCCGTATGCTG
1 AGACTGCGAATAAACTCCGTATGCTG
*
18257496 AGACTGGGAATAAACTCCGTATGC
1 AGACTGCGAATAAACTCCGTATGC
18257520 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (26 bp):
AGACTGCGAATAAACTCCGTATGCTG
Found at i:18258536 original size:26 final size:26
Alignment explanation
Indices: 18258507--18258559 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18258497 CTGGTCCGAT
*
18258507 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
18258533 CTTAGACTGGGAACGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
18258559 C
1 C
18258560 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:18259442 original size:26 final size:26
Alignment explanation
Indices: 18259406--18259458 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18259396 CTGATTCGAT
*
18259406 CTTAGATTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
18259432 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
18259458 C
1 C
18259459 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:18260348 original size:26 final size:26
Alignment explanation
Indices: 18260306--18260358 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18260296 CTGGTCTGAT
*
18260306 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18260332 CTTAGACTAGGATTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18260358 C
1 C
18260359 CTAAGTCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18261245 original size:26 final size:26
Alignment explanation
Indices: 18261209--18261261 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18261199 CTGGTTCGAT
18261209 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18261235 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18261261 C
1 C
18261262 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18262485 original size:171 final size:166
Alignment explanation
Indices: 18262199--18262573 Score: 484
Period size: 171 Copynumber: 2.2 Consensus size: 166
18262189 GGGTGGTCAG
18262199 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGTTACCGATC
1 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT-CATGTTACCGATC
* * * *
18262264 ATGCTGCCGCAACCCTCGGTCCGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCA
65 ATGCTACCACAACCCTCAGTCCGGTCTGATCATAGACTGGGAATGAACTCCGTAAGCCTAAGCCA
**
18262329 ACCGACGAAACGAGCGAGTTGGTGGACGGGCGGGCACTACG
130 ACCGACGAAACGAGC--G--GGTGGACGGGCGGGCACTAAA
* * * *
18262370 TCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATTGGCCGGGTCCCCCTCT-ATG-TACTGTCGA
1 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTCATGTTAC---CGA
* * * * *
18262433 TCCTGCTACCATAACCCTCAGTTCGGTTTGATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGC
63 TCATGCTACCACAACCCTCAGTCCGGTCTGATCATAGACTGGGAATGAACTCCGTAAGCCTAAGC
*
18262498 CAACCGACGAAACGAGCGGGTGGGCGGGCGGGCACTAAA
128 CAACCGACGAAACGAGCGGGTGGACGGGCGGGCACTAAA
* * * *
18262537 CCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGA
1 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
18262574 TAGCGTGGTA
Statistics
Matches: 177, Mismatches: 24, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
167 47 0.27
168 3 0.02
169 4 0.02
171 123 0.69
ACGTcount: A:0.21, C:0.28, G:0.34, T:0.17
Consensus pattern (166 bp):
CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTCATGTTACCGATCA
TGCTACCACAACCCTCAGTCCGGTCTGATCATAGACTGGGAATGAACTCCGTAAGCCTAAGCCAA
CCGACGAAACGAGCGGGTGGACGGGCGGGCACTAAA
Found at i:18265894 original size:26 final size:26
Alignment explanation
Indices: 18265865--18265914 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
18265855 GGTACATCTT
18265865 AGACTAGGAACAAACTCCGTATGCTC
1 AGACTAGGAACAAACTCCGTATGCTC
* ** *
18265891 AGACTGGGAATGAACTCTGTATGC
1 AGACTAGGAACAAACTCCGTATGC
18265915 CTAAGTCAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (26 bp):
AGACTAGGAACAAACTCCGTATGCTC
Found at i:18266801 original size:26 final size:26
Alignment explanation
Indices: 18266765--18266817 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18266755 CCGGTTCAAT
*
18266765 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18266791 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18266817 C
1 C
18266818 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18267137 original size:903 final size:898
Alignment explanation
Indices: 18253058--18257707 Score: 5474
Period size: 899 Copynumber: 5.2 Consensus size: 898
18253048 ACTTCGTCGC
* * * ** *
18253058 CCAGAGGGGCGGGATACGCAAGCTGGGGATT-GCCTGGGTCCCCCTCTGCGTGCTGTTGATCTTG
1 CCAGAGGGGCGAGATGCGCAAGCCGGGGATTAGCC-GGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * *
18253122 CTACCGTAA-CCTCAGTCTGGTCTGATCTTAGA-TGGGGAATGAACTCCGTATGCCTAAGCCAAC
65 CTGCCGCAACCCTCAG-CCGATCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
18253185 CTATGAAAAGAGCGGGCGGGCGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
128 CGACG--AA-A-----CGAGCGGGCGG-C-GGC-GGCAGGCACTACGCCGGCCAGAGAGACGGGA
* * ** * *
18253250 TGTGCAAGCCGTGGATCGATAGCGTCATAGGTGGGTTTAGGCACATCTTCAAATTTCTGCGTGCC
182 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
*
18253315 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATG
247 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
18253380 GTAAGACGACTCGTTTTCTATTTTCCATTATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
312 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * *
18253445 ATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGATGTGAGCCTTGTATTTTTGTTGGCATG
377 ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* **
18253510 CACAAAAAACTTCAGCTAAAAACTTC-AAGTCCACAAGATTTTGTGACCATTTGAAAAAAGTGTC
442 CACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
18253574 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
506 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
18253639 GGTGTGAGTTCTCAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
571 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
18253704 TCGCACATCATGTGTGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAG
636 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAG
* *
18253768 GTTC-TCAGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
701 GTTCTTC-GGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCC
** * * *
18253832 AAGCCCAGCATGTGCTGCCTTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTA
764 AAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTA
* * *
18253897 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCA
829 TGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
*
18253962 GTCGG
894 GCCGG
* * * * * * *
18253967 CTAGAGGGACGGGATGCGCAAGCCGGGGA-TCGCCCGGGTCCCCCTCTACGTGCTGCCAATCCTA
1 CCAGAGGGGCGAGATGCGCAAGCCGGGGATTAG-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * *
18254031 CTGCCGTAACCCTCGGTCCGATCTGATCTTAGACCGGGAATGAACTCCGTATGACTAAGCCAACC
65 CTGCCGCAACCCTCAG-CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18254096 GACGAAAGGAGCGGGCGGGCGGGCAGGCAGGCACAACGCCTGCCAGAGAGACGAGATGCGCAAGC
129 GACGAAACGAGCGGGC-GGC-GGC-GGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
18254161 CGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
191 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* * *
18254226 TTTTTGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAG-TTCAATGGCAAGGCG
256 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGACG
* * ** ** * *
18254290 AATCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTGTGGTTTGAGATTTTTT-AAATTTTTTT
320 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT
* ** * ** *
18254354 CAGAAGGAGTTTTGGCCCCAAACTTCATAGAGGTGATCCTTCCATTTTTTTTGGCATGCACAAAA
385 -GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
18254419 AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
449 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18254484 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAA-GGGGAGTGAG
514 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18254548 TTCCCGAGGTTTGATGAGGGATAGGTTGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCAC
579 TTCTCAAGGTTTGATGAGGGATAGG--GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
18254612 ATCATGTGCGCACACCCCACGG-CCCCCCGATTGCCGAAA-CCCAATGCCGTCGATCCAGGTTCT
642 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGT-CAGGTTCT
* * * * * * *
18254675 CCGACGATGCTTCGACGACGGTGCCCCGAC-AAGAAAAATGCGGCACCAGCACAATGCTCGAG-C
706 TCGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCAC-ATGCCCAAGCC
* * * * * ** *
18254738 CAGCA-GTGCTGCCACAAGCCTCGGTCCAGTACGATCTTAGACCAGGAATGAACTCCGTACGCTT
769 CAGCATGTGCTGCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
18254802 AGACTGGGAAT-AGACTCTGTATGCCTAAGTCAACCCACGACACAAGCGTGCGGGCGCTCAACCG
834 AGACTGGGAATGA-ACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
18254866 G
898 G
* ** * * * * ** * *
18254867 CCAGAGGGGCGGGATGCAAAAGTC-GGGATCAACCGGGTCCCCCTCTACGTGCTGTTGATCTTAC
1 CCAGAGGGGCGAGATGCGCAAGCCGGGGATTAGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
*** * * * *
18254931 TGCTATAACCCTCAATCCGATCAGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTG
66 TGCCGCAACCCTC-AGCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * *
18254996 ACGAAACGAGCGGGCGGTCGGGCAG-ACGGACACTACACCGGCCAGAGAGACAGGCTGCGTAAGT
130 ACGAAACGAGCGGGCGG-C-GGCGGCA-GG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
18255060 CGTTGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAAGCCATT
191 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
18255125 TTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGA
256 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
18255190 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAA-TTTTTTG
321 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
* * * * * *
18255254 AAAGGAGTTTTCGCCCCAAACATGGTAGATGTGATCCTTGTATTTTTTTTGTCATGCACAAAAAA
386 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
** * *
18255319 ATTCAGCGGAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAG
451 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
18255384 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
516 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
18255449 CTCAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATAA
581 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * ** ** * * * * * *
18255514 TGTGTGCACACCCCTCTGGCCCCTTCGATCATCGGAAGCCCAATGCCGCCGATTAGGTTCTCCGA
646 TGTGCGCACACCCC-CCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTTCGG
* * *
18255579 CGATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGC
710 CGATGCTCC-GCGATGGTGCCCCGA-CGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGC
* * * * * *
18255643 ATGTGCTACTGCAACCTTCGGTCTGG-TCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
773 ATGTGCTGCCGCAACCCTCGATCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
18255707 CTGGGATTGAACTCCGTATGCCTAAGTCAACCCCAC-AGAACGAGCGTGCGAGCGCTTAGCCGA
837 CTGGGAATGAACTCTGTATGCCTAAGTCAA-CCCACGA-AACGAGCGTGCGGGCGCTCAGCCGG
* * * * *
18255770 CCAGAGGGGCGGGATGCGCAAGTCAGGGA--ACGATCGGGTCCACCTCTGCGTGCTGCCGATCCT
1 CCAGAGGGGCGAGATGCGCAAGCCGGGGATTA-G-CCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * * * **
18255833 GCTACCACAACCCTCGGTTCGTTCCT-AACTTAGACTGGGAATGAACTCCGTATGCCTAAGGTAA
64 GCTGCCGCAACCCTCAG-CCGAT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18255897 CCGACGAAA--TGC--G-TG-GGC-G--GGCATTACGTCGACCAGAGAGACGGGATGCGCAAGCC
127 CCGACGAAACGAGCGGGCGGCGGCGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
18255953 GTGGATCAATAAGCTGGTAAGTGGGTCTT-GGCACATCTTCATATTTCTACGTGCCAATGCCATT
192 GTGGATCGATAGGGTGGTAGGTGGGT-TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* * * *
18256017 TTTACGGCCTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTGTCATGGCAAGATC-
256 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-CG
** * * *
18256081 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTT
320 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT
* * *
18256146 GGAAGGGGTTTTGGCCCCAAATTTGGTAGACGTGA-CCTTGTATTTTTATTGGCATGCACAAAAA
385 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
18256210 AATTGAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTG-AAAAAGTGTCCCCATTTCA
450 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* ** * * *
18256274 GTCACCATAATAGCTACAGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
515 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
18256339 TCTCCAGGTTTTATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATC
580 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*** * * * * *
18256404 ATGTGCGCACACTCCCCCCGGCCCCTATGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCC
645 ATGTGCGCACA--CCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTTC
* * * * **
18256469 GGTGATGCTCCAGCGATGGTACCCCGACAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAG
708 GGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAG
* * * * *
18256534 TATGTGCTGCCACAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
772 CATGTGCTGCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* *
18256599 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGG
837 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * ** *
18256661 CCAGAGGGGTGGGATGCACAAGCCGGGGA-TCGACCGGGTCCTCCTCTGCGTGCTATCGATCTTG
1 CCAGAGGGGCGAGATGCGCAAGCCGGGGATTAG-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* ** ** * * * *
18256725 CTGCCCCAACCCTTGGTTTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACT
65 CTGCCGCAACCCTCAG-CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18256790 GACAAAACGAGCGGG-TG-GGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
129 GACGAAACGAGCGGGCGGCGGC-GGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
18256853 TGGATCGATAGGGTTGTAGGTGGGTTTAGGCACACCTTCATATTTCTGCATGCCAATGCCATTTT
193 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
*
18256918 TATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
258 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * *
18256983 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTCTTCGAA
323 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
* *
18257048 AGGAGTTTTGGCCCCAAAC-TGGTAGACGTAATCCTTGTATCTTTT-TTGGCATGCAAAAAAAAA
388 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAA
* * * *
18257111 TTCAGCTAGAAACTCGAAGTGTACAATATTTTGTAACCATTTGAAAAAAGTGTCACCATTTCAGA
452 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18257176 CACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTC
517 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18257241 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-CCTCATCGCACATCT
582 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC-CATCGCACATCA
* * * * *
18257305 TGTGCGCATATCACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGGTTC-TCT
646 TGTGCGCACA-C-CCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTTC-
* * ** * * * *
18257369 GACGATGCTTCGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACAAGCCCGAGCCCAG
708 GGCGATGC-TCCGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAG
* * * * *
18257434 CATGTGCTGTCGCAACCCTCTG-TCCAGTCCGATCTTAGACTGCGAATGAACTCCGTATGCTGAG
772 CATGTGCTGCCGCAACCCTC-GATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * *
18257498 ACTGGGAATAAACTCCGTATGCCCTAAGTCAACCCAAGAAACGAACG-GATGGGCAACTCAGCCA
836 ACTGGGAATGAACTCTGTATG-CCTAAGTCAACCCACGAAACGAGCGTG-CGGGC-GCTCAGCCG
18257562 G
898 G
* * * * * *
18257563 CCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGACCAGGTCCCCCCTCTGCATGCTACCGATCAT
1 CCAGAGGGGCGAGATGCGCAAGCCGGGGATTAG-CCGGGT-CCCCCTCTGCGTGCTGCCGATCCT
* * * *
18257627 GCTGCCGCAACCCTCAGTCCGGTCTAATCATAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
64 GCTGCCGCAACCCTCAG-CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
18257692 CGACGAAACGAGCGGG
128 CGACGAAACGAGCGGG
18257708 TGGGTGGGCG
Statistics
Matches: 3231, Mismatches: 438, Indels: 150
0.85 0.11 0.04
Matches are distributed among these distances:
890 2 0.00
891 283 0.09
892 433 0.13
893 48 0.01
895 7 0.00
896 3 0.00
897 5 0.00
898 235 0.07
899 621 0.19
900 493 0.15
901 157 0.05
902 601 0.19
903 144 0.04
904 84 0.03
905 1 0.00
907 1 0.00
908 3 0.00
909 57 0.02
910 53 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
CCAGAGGGGCGAGATGCGCAAGCCGGGGATTAGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
TGCCGCAACCCTCAGCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGCGGCGGCGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGC
TCCGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCTG
CCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
Found at i:18267564 original size:26 final size:26
Alignment explanation
Indices: 18267528--18267580 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18267518 CTGGTTCGAT
18267528 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18267554 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18267580 C
1 C
18267581 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18267918 original size:26 final size:26
Alignment explanation
Indices: 18267881--18267932 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18267871 CAATGCCATT
*
18267881 TTAGACTAGGAATGAACTTCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
* *
18267907 TTAGACTGGGAATTAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
18267933 CTAAGCCCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:18268097 original size:26 final size:26
Alignment explanation
Indices: 18268061--18268113 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18268051 CCGGTCCGAT
18268061 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18268087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18268113 C
1 C
18268114 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18268997 original size:26 final size:26
Alignment explanation
Indices: 18268961--18269013 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18268951 CCAGTTCGAT
* *
18268961 CTTAGACTGGGAATGAATTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18268987 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18269013 C
1 C
18269014 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18269899 original size:26 final size:26
Alignment explanation
Indices: 18269861--18269913 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18269851 CTGGTTCGAT
*
18269861 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18269887 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18269913 C
1 C
18269914 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18270787 original size:26 final size:26
Alignment explanation
Indices: 18270751--18270803 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18270741 CCGGTTCGAT
18270751 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18270777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18270803 C
1 C
18270804 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18271061 original size:890 final size:893
Alignment explanation
Indices: 18267975--18275008 Score: 8815
Period size: 900 Copynumber: 7.9 Consensus size: 893
18267965 GGCGGGCTCT
** * *
18267975 ACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGGTGCCG
1 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
18268040 TAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
66 CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* ** *
18268105 TCCGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCGCTCATTCGGCCAGAGGGGCAGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * *
18268170 GCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCATTGG
196 GCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGG
* * * * * *
18268235 TCTGATCTGATTTTAGATTGGGAATGAACTTCGTATGCTTAAGCCAACCGATG-AA--A-CGAGC
261 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGC
* * * * * * *
18268296 GGGCGGGCGGGCAGGCACTATGCCGGCTAGAGAGATGGGTTGCACAAGCCGTGAATCGATAGGGT
326 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
** *
18268361 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTAAGGCTTGTAAAT
391 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
18268426 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
456 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * * * *
18268491 CACGATTTTTGAAACTTTTGGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCC
521 CACGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACC
18268556 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
586 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
18268621 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAGACTTTAATGGCTAT
651 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
18268686 TGGCAGGAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
716 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
18268751 GGATAGGGGGCAAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATGCCCC
781 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCC
*
18268816 CCGGCCCCCCGATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTCCCCGGCGATGCTCCG
844 CCGGCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTT------CTATG---CG
* * * *
18268875 ACGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGGATGTGCTACC
1 ACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* ** * * * *
18268939 GTAACCCTCTCTCCAGTTCGATCTTAGACTGGGAATGAATTCCGTATGCTTACACTGGGAATGAA
65 GCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
* * *
18269004 CTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGA
130 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * *
18269069 TGCGCAAGCCGGGGATAGGCCGGGTCCACCTCTACGTGCTG-CAGATCCTGCTACCGTAAGCCTC
195 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTACCGCAACCCTC
* ** ** *
18269133 AGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
259 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGA
* * * * *
18269198 GTGGGCAGGCGCGCGGGCACTACGCCGGCCAAAGAGAAGGGATGCGCAAGCCGTGGATCGATAGG
324 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
18269263 GTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTT-CGTGCCAATGCCATTTTTCTGGCTTGTA
389 GTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTGTGTGCCAATGCCATTTTTATGGCTTGTA
* * *
18269326 AATTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCACGGCAAGACGACTCGTATTCTATT
453 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * *
18269391 TTTCACGA-TTTTCAAAACTTTTTATGGTTCAGGATTTTTT-TAATTTTTTTGGAAAGAGTTTTG
518 TTTCACGATTTTTGAAAA-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * *
18269454 GTCCCAAACTTCGTAGACGTGGTCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
582 GACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
18269519 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATGG
647 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
18269584 CAATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGA
712 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
18269649 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCGCACATCATGTGCGTACACC
777 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* *
18269714 CCCTGGCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCTGATGATGCTCCG
842 CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG-T-TC---T-ATG---CG
* ** *
18269775 ACGATGGTGCCTCGGTGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
1 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
18269840 CAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAC
66 CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* * *
18269905 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCTAGAGGGGCGGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
** * * * * * *
18269970 GCGCAAGCTAGGGATCGATCGGGTCCCTCTCTGTGTGCTGTCGATCATGCTACCGTAACCCTCAG
196 GCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGG
** * * * *
18270035 TCTGGTCCAATCTTAGACTAGGAATGAACTCCGTAAGCCTAAGCCAACTGACGAAATGAGCTG-G
261 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GAG
* * * *** * * *
18270099 CGGGCGGACAGGCGAGCACTATATCGGCCAGAGAGACGGGACGCGCAAGCCATGGATTGATAGGG
325 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * * *
18270164 CGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTCCCAATGCCATTTTGAAGGCTTCTAAA
390 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
18270229 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTATTC-AATTT
455 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
18270293 TCATGATTTTCGAAAATTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGAG
520 TCACGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGAC
*
18270358 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAGTTCAGCTAAAAACT
585 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
18270423 CGAAGTGCACAAGATTTTGTGACCATTTCAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTA
650 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
18270488 ATGGCAG-AAACCTGTAAAATATCAAATGCTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGATGA
715 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * ***
18270552 GGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCTATCATGCATCATGTGCGCACACCCCC
780 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* * *
18270617 CCGGCCCCCCGATTGTCGGAACCCCAATGCCGTCGGTTAGATTCTATG-G
844 CCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTATGCG
* * *
18270666 -CGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATATGCTGTCG
1 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
*
18270730 AAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
66 CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* * *
18270795 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCAGCCAGAGGAGCGGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * *
18270860 GCGCAAGCCGGGGATC-ACCCCGGTCCCCCTCTGCGTGCTGCCGATCCTGTTACCGCAACCCTCG
196 GCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCG
*** * * * *
18270924 GTCCAATCT-AGTCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAATGAGCCA
260 GTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGA
*
18270988 GCGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
324 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
18271053 ATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAATGCCATTTTTATGGCTTGTA
389 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCC-AATGCCATTTTTATGGCTTGTA
*
18271118 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATT
453 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
18271183 TTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTCTGGAAGGAGTTTTT
518 TTTCACGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GGAAGGAGTTTTG
* *
18271247 GAACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAAATTCAGCTAA
582 GACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC--ACAAAAAAATTCAGCTAA
* * **
18271312 AAACTGGAAGTGTACAAGATTTTGTGACCATTTG-AAAAATTACCCCCATTTCAGACACTTTAAT
645 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
18271376 GGCTACTGGCAG-AAACCTGTAAAATCTCAAATGGTCTTTAAGTGGGTGTGAGTTCTCAAGGTTT
710 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* ***
18271440 GATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCATGCATCATGTGCGCACA
775 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* ** *
18271505 CCCCCCGGCCCCCCGATCATCAAAACCCCAATGCCATCGGTCAGGTTC--T-CG
840 CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTATGCG
* *
18271556 ATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
1 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
18271621 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGTTTAGACTGGGAATGAAC
66 CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* * * *
18271686 TCCGTATGCCTAAGT-AACCTACGAAACGAGCGTGCGAGCGCTCAACCGACCAGAGGGGCCGGGA
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-CGGGA
* *** * * * * * *
18271750 TGCGTAAATTGGGGATCGATCGGGT-CCCCTCTACCTGCTGCCGATCCTGCTATCACAACCCTCG
195 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCG
* * *
18271814 GTCCGATCCGATCCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-CGA
260 GTCTGGTCTGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGA
* *
18271875 GCGGGCGGGC-GGC---CAC--C-ACGGCGA-AGAGAC-GGATGCGCAAGCCGTGGATCGATAGG
324 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * **
18271931 CGTGGTA-GTGGGTTTGAGGCACTATCATGA-ATTTCTGCATG-CAATTG--ATTTTTATGGCTT
389 -GTGGTAGGTGGGTTT-AGGCAC-ATCTTCATATTTTTGTGTGCCAA-TGCCATTTTTATGGCTT
18271991 GT-AATTCATAC-ATGGT-CCTT-AGCCTTCACGTGAA-TTTC--GG-AAGGACGA-TCGTTTTC
450 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GACGACTCGTTTTC
* * *
18272047 TATTTTTCATGATTTTTG--AAGTTTTACGGTTCGGGATTTTTTTAAA-TTTTTC--AA-GAGTT
514 TATTTTTCACGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
18272106 TTGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCTA
579 TTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
18272170 AACACTCG-A-TGTACATGATTTTGGTGACC-TTT--AAAAAGTGT-CCCATTTCAAAACACTTT
644 AAAACTCGAAGTGTACAAGATTTT-GTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTT
* * *
18272229 AACGGCTACTGGAAGCAAACC-GT-AAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCTAGG
707 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
18272291 TTTGATGAGGGATAGGGGGCCAATATAAGGACAAAGTACCAGCACCCATCGCACATCATGTGCGC
772 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* ** * *
18272356 ACACCCCCC-GACCCCCGATCACCGGAACCCCAATGACGTCGGTCAGGTTC--TCCG
837 ACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTATGCG
* * * * * * * ***
18272410 GCTATGGTGCCCCGACGAAGAAAAATACGACACCAGAAAATGCTCGAGCCCAGCATGTGCCATCG
1 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
18272475 TAACCCTCAGT-C---T-GA---T----T-----TG--------AT-CTTAGACTGCGAATGAAC
66 CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* *
18272514 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGAGGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* ** * * * *
18272579 GCACAAGCC-GGGATCGGTCGGGTCCCCTTATGCGTGCTGTCGATCCTGCTGCCACAACCCTCGG
196 GCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGG
* **
18272643 TC-GAGTCTGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCGATAAAATGAACGGG
261 TCTG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG--ACGA--AAC--G
* * * * * * *
18272707 TGGGCAGGCGGGCAGGCAGGCAGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTGGAT
319 AGCG-A-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
18272772 CGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTATGTGCCAATG-CATTTTTATGG
382 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGG
* * * *
18272836 CTTCTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAACTTTCATGGTAAGACGACTCGTTT
447 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * * **
18272901 TTTATTTTTCACGATTTTTGAAACTTTCTATGGTTCGGGGTTTTTTTAAAATTTTTTTAGAAGGA
512 TCTATTTTTCACGATTTTTGAAAATTTTTACGGTTC-GGGATTTTTTAAAATTTTTTCGGAAGGA
* * * *
18272966 -TTTTCGATCCCAAACTTGGTAGACGTGATCCTTGTATTATTGTTAGCATGCACAAAAAATTTCA
576 GTTTTGGA-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
18273030 GCTAAAAACTCAAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACT
640 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
18273095 TTAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
705 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
18273159 GGTTTGGTGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGC
770 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* ** * *
18273224 GCACACCGCCCCCCGACCCCCCGATCACCGGAAACCCAATGCCGTGGGTCAGGTTCTCCGGCGAT
835 GCACA---CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT------AT
18273289 GCTCCG
891 G---CG
** * * * * *
18273295 ACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCTTGTGCTGTCA
1 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * ** *
18273360 AAACCCCCGGTCTGGGCCGATCTTAGACTGGGAATGAACTCCATATGCTTAAACTGGGAATGAAC
66 CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* * *
18273425 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGACGAGCGGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * *
18273490 GCGCAAGTCGGGGATCGATC-GGTCCCCCTCTGTGTGCTGTTGATCTTGCTACCCCAACCCTCGG
196 GCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGG
* *
18273554 TCTGGTCTGATCTTAGACTGGCAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGA--
261 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGC
* * * * * *
18273617 --ACGGACGGGCGGGCACTACGCCGACCAAAGAGACGGGATGGGTAAGCCGTGGATCGATAGGGT
326 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* ***
18273680 GGGAGGTGGGTTTAGGCACATCTTCATATTTCAATGTGCCAATGCCATTTTTATGGCTTGTAAAT
391 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
*
18273745 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
456 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** ** *
18273810 CACGA-TTTCCAAAACTTTTTACTCTTCGGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGG-C
521 CACGATTTTTGAAAA-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGAC
* * * *
18273873 CACAAACTTGGTAGACATGATCGTTGTTTTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAAC
585 C-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
18273938 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
649 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
18274003 ACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
714 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
18274068 AGGGATAGGGGGTCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCACGTGCGCACACCCC
779 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
** ** * *
18274133 TTGGGTCCCCGATCGTCGGAACCCCAAAGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG
844 CCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT------ATG---CG
18274192 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG-ATGTGCTGCCG
1 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *** *
18274256 CAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCTGCATGCTTAGACTGGGAATCAA
66 CAACCCTCGGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
*
18274320 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGA
130 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * **
18274385 CGCGCAAGCCGGGGATCGACCGGGTCACCCTCTGCGTGTTGTTGATCCTGCTGTCGCAACCCTCG
195 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCG
* *
18274450 GTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGA---A-
260 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAG
* * *
18274511 CGGGCGGGCGGGCGGGCACTACGTCGGCCTGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGG
325 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * ** *
18274576 TGGTAGGTCGGTCTAGGCACATCTTCATATTTCTACT-TGCCAATGCCATTTTTATGGCTTGTGA
390 TGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTGTGTGCCAATGCCATTTTTATGGCTTGTAA
*
18274640 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTGGTTTTCTATTT
454 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * ** * * *
18274705 TTCAAGATTTTTGAAACTTTTTGTGCTTCGAGATTTTTTAAAATTTTTTC---AGGAGTTTTGGC
519 TTCACGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGA
* * * * * * *
18274767 CCCAAACTTGGTAGACATGATCCTTTTATTTTTTTTGGCTTGCACGAAAACATTTAGCTAAAAAC
584 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
18274832 TCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
649 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
18274897 ATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
714 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
18274962 AGGAATAGAGGGCCAATATAAGGGCCAAGTA-C--CACCCATCGCACATC
779 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
18275009 TGCGCACCCC
Statistics
Matches: 5363, Mismatches: 614, Indels: 323
0.85 0.10 0.05
Matches are distributed among these distances:
827 52 0.01
828 80 0.01
829 41 0.01
830 1 0.00
832 2 0.00
837 3 0.00
838 1 0.00
839 9 0.00
840 3 0.00
842 1 0.00
843 3 0.00
845 1 0.00
846 10 0.00
847 27 0.01
848 51 0.01
849 11 0.00
850 4 0.00
851 4 0.00
852 14 0.00
853 41 0.01
854 151 0.03
855 34 0.01
856 55 0.01
857 20 0.00
858 17 0.00
859 32 0.01
860 6 0.00
862 55 0.01
863 45 0.01
864 19 0.00
865 7 0.00
866 46 0.01
867 4 0.00
868 59 0.01
869 35 0.01
870 81 0.02
871 4 0.00
872 14 0.00
873 10 0.00
874 41 0.01
875 9 0.00
876 15 0.00
877 2 0.00
878 37 0.01
879 25 0.00
880 10 0.00
881 1 0.00
882 1 0.00
883 3 0.00
885 60 0.01
886 3 0.00
887 11 0.00
888 1 0.00
889 2 0.00
890 458 0.09
891 300 0.06
892 139 0.03
893 153 0.03
894 266 0.05
895 6 0.00
896 141 0.03
897 400 0.07
898 10 0.00
899 253 0.05
900 997 0.19
901 306 0.06
902 271 0.05
903 136 0.03
904 68 0.01
905 3 0.00
907 3 0.00
909 2 0.00
910 2 0.00
911 165 0.03
912 10 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (893 bp):
ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
GCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGG
TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGC
GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
CACGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACC
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
GGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTATGCG
Found at i:18271679 original size:26 final size:26
Alignment explanation
Indices: 18271643--18271693 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18271633 CGGTCCGATC
18271643 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
*
18271669 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
18271694 CCTAAGTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:18273417 original size:26 final size:26
Alignment explanation
Indices: 18273381--18273433 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18273371 CTGGGCCGAT
*
18273381 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
*
18273407 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
18273433 C
1 C
18273434 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:18274329 original size:26 final size:26
Alignment explanation
Indices: 18274277--18274329 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18274267 CCAGTCTGAT
* *
18274277 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATCAACTCCGCATG
*
18274303 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGCATG
18274329 C
1 C
18274330 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGCATG
Found at i:18274573 original size:897 final size:895
Alignment explanation
Indices: 18272496--18275008 Score: 3519
Period size: 897 Copynumber: 2.8 Consensus size: 895
18272486 CTGATTTGAT
*
18272496 CTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18272561 CGGCCAAAGGGGAGGGATGCACAAGCC-GGGATCGGTCGGGTCCCCTTATGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC-TCTGCGTGCTGTTGATCC
*
18272625 TGCTGCCACAACCCTCGGTC-GAGTCTGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCACAACCCTCGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
18272689 ACCGATAAAATGAACGGGTGGGCAGGCGGGCAGGCAGGCAGGCACTACGCTGGCCAGAGAGACAG
194 ACCGACGAAACGAAC------G--GGCGGGC--G--GGCGGGCACTACGC-GGCCAGAGAGACGG
* *
18272754 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTATGTG
246 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAATGTG
* * *
18272819 CCAATG-CATTTTTATGGCTTCTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAACTTTCA
311 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * *
18272883 TGGTAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTCTATGGTTCGGGGTTTTTTT
376 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGCTTC-GGGATTTTTT
* * * * * *
18272948 AAAATTTTTTTAGAAGGA-TTTTCGATCCCAAACTTGGTAGACGTGATCCTTGTATTATTGTTAG
440 AAAA-TTTTTTCGAAGGAGTTTT-G-GCCCAAACTTGGTAGACATGATCCTTGTTTTTTTGTTGG
* * * *
18273012 CATGCACAAAAAATTTCAGCTAAAAACTCAAAGTGTACATGATTTTGTGACCATTTGAAAAAAGT
502 CATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
18273077 GTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCTCTTTAA
567 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
18273141 GGGGGTGTGAGTTCTTGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCAC
632 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCAC
* * **
18273206 CCATCGCACATCATGTGCGCACACCGCCCCCCGACCCCCCGATCACCGGAAACCCAATGCCGTGG
697 CCATCGCACATCACGTGCGCACA-C-CCCCCCGACCCCCCGATCACCGGAAACCCAAAGCCGCCG
**
18273271 GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACAT
760 GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACAT
* * * **
18273336 GCCTGAGCCCAGCTTGTGCTGTCAAAACCCCCGGTCTGGGCCGATCTTAGACTGGGAATGAACTC
825 GCCCGAGCCCAGCATGTGCTGCCAAAACCCCCGGTCCAGGCCGATCTTAGACTGGGAATGAACTC
*
18273401 CATATG
890 CACATG
* *
18273407 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18273472 CGGCCAGACGAGCGGGATGCGCAAGTCGGGGATCGATC-GGTCCCCCTCTGTGTGCTGTTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCTCTGCGTGCTGTTGATCC
* * * *
18273536 TGCTACCCCAACCCTCGGTCTGGTCTGATCTTAGACTGGCAATGAACTCCGTATGACTAAGCCAA
130 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * * *
18273601 CCGACGAAACGAGCGAACGGACGGGCGGGCACTACGCCGACCAAAGAGACGGGATGGGTAAGCCG
195 CCGACGAAACGAACGGGCGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCG
*
18273666 TGGATCGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTCAATGTGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAATGTGCCAATGCCATTTT
*
18273731 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
***
18273796 CGTTTTCTATTTTTCACGATTTCCAAAACTTTTTACT-CTTCGGGATTTTTTAAAATTTTTTCGG
389 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-TGCTTCGGGATTTTTTAAAATTTTTTC-G
* *
18273860 AAGAAGTTTTGGCCACAAACTTGGTAGACATGATCGTTGTTTTTTTGTTGGCATGCACAAAAAAA
452 AAGGAGTTTTGGCC-CAAACTTGGTAGACATGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAA
18273925 TTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
516 TTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18273990 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18274055 TCAAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCAC
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCAC
** *** ** *
18274120 GTGCGCACA-CCCCTTGGGTCCCCGATCGTCGGAACCCCAAAGCCGCCGGTCAGGTTCTCCGGCG
711 GTGCGCACACCCCCCCGACCCCCCGATCACCGGAAACCCAAAGCCGCCGGTCAGGTTCTCCGGCG
*
18274184 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG-ATG
776 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
** * * * **
18274248 TGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGCATG
841 TGCTGCCAAAACCCCCGGTCCAGGCCGATCTTAGACTGGGAATGAACTCCACATG
* *
18274303 CTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
18274368 CGGCCAGAGGGGCGGGACGCGCAAGCCGGGGATCGACCGGGTCACCCTCTGCGTGTTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC-CCCTCTGCGTGCTGTTGATCC
* * *
18274433 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
130 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18274498 CCCACGAAACGAACGGGCGGGCGGGCGGGCACTACGTCGGCCTGAGAGATGGGATGCGCAAGCCG
195 CCGACGAAACGAACGGGCGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
18274563 TGGATCGATAGGGTGGTAGGTCGGTCTAGGCACATCTTCATATTTCTACT-TGCCAATGCCATTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-AATGTGCCAATGCCATTT
*
18274627 TTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
18274692 TGGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGTGCTTCGAGATTTTTTAAAATTTTTTC--
388 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGCTTCGGGATTTTTTAAAATTTTTTCGA
* * * *
18274755 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT-TTATTTTTTTTGGCTTGCACGAAAACA
453 AGGAGTTTTGG-CCCAAACTTGGTAGACATGATCCTTGTT-TTTTTGTTGGCATGCACAAAAAAA
* *
18274819 TTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGA
516 TTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
18274884 CACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
18274949 TCGAGGTTTGATGAGGAATAGAGGGCCAATATAAGGGCCAAG-T--ACCACCCATCGCACATC
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATC
18275009 TGCGCACCCC
Statistics
Matches: 1433, Mismatches: 153, Indels: 52
0.87 0.09 0.03
Matches are distributed among these distances:
891 16 0.01
893 3 0.00
894 216 0.15
895 2 0.00
896 142 0.10
897 408 0.28
898 10 0.01
899 235 0.16
900 212 0.15
901 2 0.00
903 4 0.00
905 1 0.00
911 168 0.12
912 14 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTCTGCGTGCTGTTGATCCT
GCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAACGGGCGGGCGGGCGGGCACTACGCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAATGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTGAAACTTTTTATGCTTCGGGATTTTTTAAAATTTTTTCGAAGG
AGTTTTGGCCCAAACTTGGTAGACATGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTAAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCACGTGCG
CACACCCCCCCGACCCCCCGATCACCGGAAACCCAAAGCCGCCGGTCAGGTTCTCCGGCGATGCT
CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
CCAAAACCCCCGGTCCAGGCCGATCTTAGACTGGGAATGAACTCCACATG
Found at i:18275654 original size:26 final size:26
Alignment explanation
Indices: 18275625--18275676 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
18275615 CCGGTCCGAT
18275625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18275651 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18275677 ACTAAGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18276517 original size:26 final size:26
Alignment explanation
Indices: 18276481--18276531 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
18276471 TGGTCCGATC
18276481 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
18276507 TTAGACTGGGAATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
18276532 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:18278822 original size:26 final size:26
Alignment explanation
Indices: 18278786--18278836 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18278776 CATCGGATCA
*
18278786 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
18278812 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
18278837 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:18279659 original size:26 final size:26
Alignment explanation
Indices: 18279630--18279682 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18279620 CCGGTCCGAT
* *
18279630 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAACGAAATCCGTATG
* *
18279656 CTTAGACTGGGAACGAAATCTGTATG
1 CTTAGACTGAGAACGAAATCCGTATG
18279682 C
1 C
18279683 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAACGAAATCCGTATG
Found at i:18280554 original size:26 final size:26
Alignment explanation
Indices: 18280525--18280577 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18280515 CTGATCCGAT
* *
18280525 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18280551 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18280577 C
1 C
18280578 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18281464 original size:26 final size:26
Alignment explanation
Indices: 18281428--18281480 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18281418 CTGATCCTAT
18281428 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
18281454 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18281480 C
1 C
18281481 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18281936 original size:907 final size:900
Alignment explanation
Indices: 18279232--18282434 Score: 4331
Period size: 903 Copynumber: 3.6 Consensus size: 900
18279222 AGGCATTTCA
* * *
18279232 GCCCCAAAGTTGGTACACGTGATCGTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAA
1 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAAATTCAGCTAAA
*
18279297 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATG
65 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
18279362 GCTACTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
130 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * *
18279427 ATGAGGGA-AAGGGGCCAATATAAGGGCAAACTACCAGCACCCATCGCACATCATGTTCGCACAC
195 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
* * *
18279491 CCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCTGCCGGTCAGG-T---------T-CTCCGG
259 CCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCCCCGGCGATGCTCCGG
* * * * **
18279545 CGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCATCATGTGCTGCCGT
324 CGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
* * * *
18279610 AACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAACGAAAT
389 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * *
18279675 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAGCAGGCTAGAGGGGCGGGATG
454 CTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATG
* * * **
18279740 CGCAAGTCGAGGATCGGTCGGGTTCCCCTCAGCGTGCTGCCGATCCTGCTACTACAACCCTCGGT
519 CGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGT
* **
18279805 -TCGGTCCGATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAATCGACG-AA--A--CAA
584 CT-GGTCCGATCTTAGAC-AGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTCGG
* * * * *
18279863 GCGGGCGGGC---GGGCACTATGTCGGCCAGAAAGACGGGATGCACAAGCCGTGAATCGATAGGG
647 GCGGGCGGGCGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GG
* * **
18279925 TGGTAGGTGGGTTTATGTACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATCACTTGTAAA
711 TGGTAGGTGGGTTTA-GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
18279990 TTCAAATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTT
775 TTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTT
* * * * *
18280055 TCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAATATTTTTTCAAAATGAGTTTC
840 TCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
* * * * *
18280116 GACCCCAAATTTGCTAGATGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAA
1 G-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAA
*
18280181 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATG
65 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
18280246 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTTGAGGTTTG
130 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * * * *
18280311 ATGAGGGATTGGGGGCCAAGATAAGGACCAAGTACCAGCACCCATCGCAAATCATTTACGCACAC
195 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * ** * * * * *
18280376 CCCCTTGGGCCCCCTAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCCCCGGTGATTCTCTGG
260 CCCC-CGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCCCCGGCGATGCTCCGG
* *
18280441 TGATGGTGCCCCGGCAAAGAAAAATGTGGCA-CAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
324 CGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
* * *
18280505 AACCCTCGGTCTGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACT
389 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
18280570 CCGTATGCCTAAGTCAACGCATGAAACAAGCGTGCGGG-GCTCAACCGGCTAGAGGGGAGGGATG
454 CTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATG
* * * *
18280634 CGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCCGCAACCCTCGG
519 CGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA-CCGCAACCCTCGG
*
18280699 TCTGGTCCAATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGT-GGG
583 TCTGGTCCGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTCGGG
* *
18280763 CGGGCGGGCTGGTGGGCACTGCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAAGG
648 CGGGCGGGC-GGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT-AGG
* * * * * *
18280828 TTGTAGGTGTGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTTTGGCTTGTTAA
711 TGGTAGGTGGGTTTA-GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * * * * *
18280893 TTCATACAATGGTCCCCTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTACTTT
775 TTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTT
* * * * *
18280958 TCATGATTTTTGAAGCCTTTTGCTGTTCGGGATTTTTTAAAAATTTTTT-GGAAGGA-TTTT
840 TCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTT-AAAATTTTTTCGAAAGGAGTTTT
* * * * *
18281018 CCCCCCAAACTTGGTAGACATGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
1 -GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAA
18281083 AACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATG
65 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
18281147 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTAAAGGGTGTGTGAGTTCTCGAGGTTT
130 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTT
* * * * * *
18281211 GATAAGGGATAGGGGGCCAATAAAAGGGTCAAGTACCGGAACCCATCACACATCATGTGCGCACA
194 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
18281276 CCCCCCTCGGCCCCCCCGATCGTCAAAACCCTAATGCCGCCGATCAGGTTCCCCGGCGATGCTCC
259 -CCCCC-CGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCCCCGGCGATGCTCC
* * *
18281341 GGCGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACCTGCCCGAGCCCAACATGTGCTGCC
322 GGCGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * *
18281406 ACAACCCTCGGTCTGATCCTATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
387 ACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
18281471 CTCTGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
452 CTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGA
* * *
18281536 TGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCATGTTGCCGATCCTGCTACCGCAACCCTCG
517 TGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCG
* * * *
18281601 ATCTGGTCTGGTCTTAGACAGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGTGGG
582 GTCTGGTCCGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGT---
* *
18281666 CGGGCGGGCGGGCGGGTGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAAT
644 CGGGCGGGCGGGC-GGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
18281731 AGCGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
708 AG-GTGGTAGGTGGGTTTAG-CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
*
18281796 TAAATTCATATAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTTTA
771 TAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTA
*
18281861 TTTTTCATTATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
836 TTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
* *
18281926 GGCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTGTTAGCATGCAAAAAAAAATTCAGCTAAA
1 GCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAA
* * *
18281991 ACCTCGAAGTGTACAAGATTTTATGACCATTTG-AAAAAGTGTCCCCTTTTCAGACACTTTAATG
65 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * * *
18282055 GCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTTTTTAA-GGGATGTCAGTTCTTGAGGTTTG
130 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
18282119 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCGTCGCACATCATGTGCGCACAC
195 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
** * * *
18282184 CCCCCGG-CCCCCCGATCGTCGAAACCCCGTTGCCGCCGGTCAGGATCTCTGGCGATGCT-C--C
260 CCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCCCCGGCGATGCTCCGGC
* ** **
18282245 GA--------C-G--AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTCCTATCGTA
325 GATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACA
* *
18282299 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACT-
390 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
18282363 TCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTTAGCCGGCAAGAGGGGCGGGATG
455 T-GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATG
*
18282428 CACAAGC
519 CGCAAGC
18282435 TGGTGATCCT
Statistics
Matches: 2045, Mismatches: 230, Indels: 82
0.87 0.10 0.03
Matches are distributed among these distances:
884 157 0.08
885 118 0.06
886 1 0.00
889 1 0.00
890 165 0.08
892 1 0.00
893 1 0.00
894 68 0.03
895 181 0.09
896 34 0.02
898 1 0.00
899 10 0.00
900 3 0.00
901 143 0.07
902 179 0.09
903 389 0.19
904 121 0.06
905 3 0.00
906 18 0.01
907 315 0.15
908 133 0.07
909 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCCCCGGCGATGCTCCGGCG
ATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA
CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT
GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCG
CAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCT
GGTCCGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTCGGGCGG
GCGGGCGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTGGTA
GGTGGGTTTAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
TAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGA
TTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
Found at i:18282347 original size:26 final size:26
Alignment explanation
Indices: 18282318--18282370 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18282308 CCGGTCCGAT
*
18282318 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18282344 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18282370 C
1 C
18282371 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18283459 original size:26 final size:26
Alignment explanation
Indices: 18283423--18283475 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18283413 CCGATCTGAT
18283423 CTTAGACTGGGAATAAACTCCGGATG
1 CTTAGACTGGGAATAAACTCCGGATG
* *
18283449 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGGATG
18283475 C
1 C
18283476 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGGATG
Found at i:18284353 original size:26 final size:26
Alignment explanation
Indices: 18284317--18284369 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18284307 CCGGTTCGAT
18284317 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
18284343 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18284369 C
1 C
18284370 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18285066 original size:26 final size:26
Alignment explanation
Indices: 18285037--18285089 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18285027 CTGGTCCGAT
18285037 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18285063 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18285089 C
1 C
18285090 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18286318 original size:873 final size:870
Alignment explanation
Indices: 18284606--18288593 Score: 4799
Period size: 870 Copynumber: 4.5 Consensus size: 870
18284596 TTTACGATAC
* * * *
18284606 GGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACCTGGTAGATGTGATCCTTTTAT
1 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTAT
* * * * *
18284671 TTTTGTTGGCATGTACAAAGAAATTCAGCCAAAACCTCA-AAGTGTACAAGATTTTGTGACCATT
66 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT-AGAAGTGTACAAGATTTTGTGACCATT
*
18284735 TGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
130 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
18284800 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
195 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
18284865 GTACCGGCACCCATCGCACATCATGTGTGCACACCCCCTCGACCCCCCGATCGTCGGAACCCCAA
260 GTACCAGCACCCATCGCACATCA--TGTGCGCA--CCC-CGCCCCCCCGATCGTCGGAACCCCAA
* * * *
18284930 TG-C-C--GTC-GG---TCAAGT--T-CTTCGATGATGGTGCCCCGACGAAGAAAAATATGGCAC
320 TGCCGCTGGTCAGGTTCTCCAGTGATGCTCCGGTGATGGTG-CCCGACGAAGAAAAATGTGGCAC
* * * **
18284984 CAGCATAT-ACCGATGCCCAGCATGTGATGCCACAACCCTC-AGTCTGGTCCGATCTTAGACTGG
384 CAGCACATGCCCGA-GCCCAGCATGTGCTGCCACAACCCTCGA-TCCAGTCCGATCTTAGACTGG
*
18285047 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA-GTCAATCCACAAAATGA
447 GAATGAACTCCGTATGC-----CT---AA-G---TC---A-ACC-AACG--AA---AC--AA--A
* * * *
18285111 GCGTGCGGGCGCTCAGCCGGCCTGAGGGGTGGGATGTGCAAGTCGGGGATCG-GCTGGGTCCCCC
486 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCC
* * * *
18285175 TCTGCGTGCAACCGATCCTGCTGCCGCAACCCTCGGT-TCGGTCCGATCTTAGA-TCGGAAATGA
550 TCTGCATGCTACCGATCCTGCTGCCGCAACCCTAGGTCT-GGTCCGATCTTAGACT-GGGAATGA
* * * * * *
18285238 ACTCCGTATGCCTAAGCCAACCGATG-A-AACGAGCGAGTGGGCGGGTGAGCACTACGTCGGCCA
613 ACTCCGTATGCCTAAGCCAACCGACGAACAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCA
* * *
18285301 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGAAGGTGGCTTTAGGCACATCTTCATAT
678 GAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* ** *
18285366 TTCTGA-GTGCCAATGAAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACG
743 TTCT-ACGCGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* *
18285430 TGAACTTTTATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTTAAAACTTTCTGA-GGTTT
807 TGAACTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTT-TGACGGTTT
*
18285494 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTTTAT
1 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTAT
* * * *
18285559 TTTTGTTGGCATGCACAAAAAAATTTAGCTAGAAACTAGAAATGTACAAGATTTTGTGACCATTT
66 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTT
* *
18285624 GAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAAT
131 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
18285689 GCTCTTTAAGGAGGG-GTGAGTTCTCGAGGTTTAATGAGGGATACGGGGCCAATATAAGGGCCAA
196 GCTCTTTAAGG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
18285753 GTACCAGCACCCATTGCACATCAAGTGCGTACACCCCCCCGGCCCCCCCGATCGTCGGAACCTCA
260 GTACCAGCACCCATCGCACATCATGTGCG--CA---CCCC-GCCCCCCCGATCGTCGGAACCCCA
* *
18285818 ATGTCGCTGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCGACGAAGAAAAATGTGGCAC
319 ATGCCGCTGGTCAGGTTCTCCAGTGATGCTCCGGTGATGGTGCCCGACGAAGAAAAATGTGGCAC
*
18285883 CAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAGTTCGATCTTAGACTGGGA
384 CAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAGTCCGATCTTAGACTGGGA
* * * * *
18285948 ATGAACTCCGTATGCCTAAGTTAACCAACGAAAC-AAGCGTGTGGCCGCTTAACCGGCCAGAGGG
449 ATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * ** * *
18286012 GTGGGATGCGCAAGCCGGGTATCGGTCGGGTCCCTCACTGCATGCTATTGATCTTGCTGCCGTAA
514 GTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGCAA
* * * *
18286077 CCCTAGGTCTGGTCCTATCTTCGATTGGGAATGAACTCCGTATGCCAAAGCCAACCGACG-A-AA
579 CCCTAGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAACAA
* * *
18286140 CGAGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAAAGACGGGATGCGCAAGCCATGGATCGAT
644 CGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGAT
18286205 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGCGCCAATGCCATTTTTATGGCTTG
709 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGCGCCAATGCCATTTTTATGGCTTG
* *
18286270 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTAATGGCAAGACGACTCGTTTTCTA
774 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCATTTTCTA
*
18286335 TTTTTCACGATTTTTGAAAACTTTTG-CGGTTCA
839 TTTTTCACGATTTTT-AAAACTTTTGACGGTT-T
* * *
18286368 GCGATTTTTTAAAATTTTTTTGGAA-GAATATTTGGCCCCAAACTTGGTAGATGTGATCCTTTTA
1 GGGATTTTTTAAAATTTTTTTGGAAGGAGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTTTA
*
18286432 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
65 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATT
* *
18286497 TGAAAAAAGTGTCCCCATATCAGACACTTTAATAGG-TATTGGCAGCAAACCTGTAAAATCTCAA
130 TGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * *
18286561 ATGCTCTTTAAGGGGGTTTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGAGCCA
194 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
18286626 AGTACCAGCACCCATCGCACATAATGTGCGCA---CACCCCTCCAATCGTCGGAACCCCAATGCC
259 AGTACCAGCACCCATCGCACATCATGTGCGCACCCCGCCCCCCCGATCGTCGGAACCCCAATGCC
** *
18286688 GCCT-GTCAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCGACGAAGAAAAATGTGGCACCAGC
324 G-CTGGTCAGGTTCTCCAGTGATGCTCCGGTGATGGTGCCCGACGAAGAAAAATGTGGCACCAGC
* * *
18286752 ACACGCCCGAGCCTAGCATGTGCTGCAACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGA
388 ACATGCCCGAGCCCAGCATGTGCTGCCACAA-CC-C--T-C-G----ATC-----C-----A-G-
* * * *
18286817 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAA-CGTAC
431 --TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAAGCGTGC
*
18286881 GGGCGCCTCAGCCGGCCAAAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCA
492 GGGCG-CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCA
* * * * *
18286946 TGCTACCAATCCTACTGCCGCAACCCTCAGTTC-GGTCGGATCTTAGACTAGGAATGAACTCCGT
556 TGCTACCGATCCTGCTGCCGCAACCCT-AGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
*
18287010 ATGCCTAAGCCAACCGACGAAACGAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAA
620 ATGCCTAAGCCAACCGACG-AAC-AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGA-AA
* ** * * * * *
18287075 -ACGAGATATGCAAGCCGTGGATCGATAGGGTGGTAGGTTGTTTTAGGTACACCATCATATTTCT
682 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * * * *
18287139 GCGTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTTTAGCCTTCACGTGAAG
747 ACGCGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAC
* * * *
18287204 TTTCACGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTT
812 TTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTGACGGTTT
* * * *
18287263 GGGATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTAT
1 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTAT
* * *
18287328 TTTTTTTGGCCTACACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
66 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTT
* * *
18287393 GAAAAAAGTGTCCCAATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAA
131 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
18287458 GCTCTTTAAGGGGATGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAG
196 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * *
18287523 TACCAGCACCCATCGCACATCATGTGCGCA---CACCCCCCCGATCGCCAGAACCCCAATGCCG-
261 TACCAGCACCCATCGCACATCATGTGCGCACCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGC
* * ** * *
18287584 TCGGTTAGGTTCTCCAGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGACACCAGCT
326 T-GGTCAGGTTCTCCAGTGATGCTCCGGTGATGGTG-CCCGACGAAGAAAAATGTGGCACCAGCA
* * * *
18287649 CATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGT-CACTTCGTATGCTTAGACTGGGAATG
389 CATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAGTCCG-AT-CTTAGACTGGGAATG
* * * * * * * *
18287713 AACTCTGTCTGCCTAAGTCAACCCACGAAAC-GAGCGTGTGAGCGCTCAGCCAGCTAGAGGGGTG
452 AACTCCGTATGCCTAAGTCAACCAACGAAACAAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTG
* * * * ** ** *
18287777 TGATGCGTAAGCCGAGGATCGATCAGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCGCAGCCC
517 GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCC
* * * *
18287842 TTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACTGACGAAACAAGC
582 TAGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AACAA-C
* * * ** *
18287907 GCGCGGGCGGGCGGGTGGGCAGTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
645 GAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATA
* *
18287972 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGC-CTGCCAATGCCATTTTTATGGCTTG
710 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGC-GCCAATGCCATTTTTATGGCTTG
* * * *
18288036 TAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTA
774 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCATTTTCTA
* * * *
18288101 TTTTTCATGATTTTTGAAACTTTTTACGGTTC
839 TTTTTCACGATTTTTAAAACTTTTGACGGTTT
* * * *
18288133 AGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCGCAAACTTGGTAGAGGTGATCCTTGTAT
1 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTAT
* *
18288198 TTTTTTTGGCATGCACAAAACATTTCAGCTAAAAACTCA-AAGTGTACAAGATTTTGTGACCATT
66 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT-AGAAGTGTACAAGATTTTGTGACCATT
* * * *
18288262 TGAAAAAAATGTCCCCATTTCTGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCGAA
130 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
18288327 TGCTGTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
195 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
18288392 GTACCAGCACCCATCGTACATCCTGTGCGCAAACCCCTGGCCCCCCCGATCGTCGAAACCCTAAT
260 GTACCAGCACCCATCGCACATCATGTGCGC--ACCCC--GCCCCCCCGATCGTCGGAACCCCAAT
* *** *
18288457 GCCGCCGGTCAGGTTCTCCAGTGATGCTCCAACGATGGTGCCCTGACGAAGAAAAATGTAGCACC
321 GCCGCTGGTCAGGTTCTCCAGTGATGCTCCGGTGATGGTGCCC-GACGAAGAAAAATGTGGCACC
* * * * *
18288522 AGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC-AGCCCGGTCCAATCTTAGACTGGGA
385 AGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGA-TCCAGTCCGATCTTAGACTGGGA
18288586 ATGAACTC
449 ATGAACTC
18288594 GGAATGAAAA
Statistics
Matches: 2709, Mismatches: 303, Indels: 188
0.85 0.09 0.06
Matches are distributed among these distances:
865 109 0.04
866 5 0.00
867 1 0.00
869 7 0.00
870 583 0.22
871 58 0.02
872 4 0.00
873 330 0.12
874 267 0.10
875 8 0.00
876 23 0.01
877 110 0.04
878 5 0.00
880 2 0.00
881 2 0.00
882 2 0.00
883 3 0.00
884 1 0.00
885 1 0.00
886 6 0.00
887 2 0.00
888 260 0.10
889 36 0.01
890 5 0.00
891 54 0.02
892 120 0.04
893 8 0.00
894 8 0.00
895 331 0.12
896 245 0.09
897 6 0.00
899 90 0.03
900 17 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (870 bp):
GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTAT
TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGC
TGGTCAGGTTCTCCAGTGATGCTCCGGTGATGGTGCCCGACGAAGAAAAATGTGGCACCAGCACA
TGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCAACGAAACAAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGAT
GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTAGG
TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAACAACGAGCGG
GCGGGCGGGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTACGCGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
CGATTTTTAAAACTTTTGACGGTTT
Found at i:18286830 original size:26 final size:26
Alignment explanation
Indices: 18286801--18286853 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18286791 CCGGTCCAAT
18286801 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18286827 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18286853 C
1 C
18286854 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18291713 original size:26 final size:26
Alignment explanation
Indices: 18291662--18291714 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18291652 TCGGTCTGAT
*
18291662 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
18291688 CTTAGACTGGGAATGAACT-CTATATG
1 CTTAGACTGGGAATGAACTAC-ATATG
18291714 C
1 C
18291715 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:18294190 original size:889 final size:885
Alignment explanation
Indices: 18290800--18301802 Score: 12789
Period size: 903 Copynumber: 12.4 Consensus size: 885
18290790 CGGAATTTTA
* * * * *
18290800 TTAGGCTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGCC
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * ** * * *
18290865 GGCCAGAGGGGCAGGATGCACAAGCCGATGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCT
66 GGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCT
* * * *
18290930 GCTGCCACAACCCTC-AGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGTCTAAGCCAA
131 GCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * **
18290994 CAGATGAAACAAGTGGGCGGGCGGACGGGTACTACGCCGGCCAGAGAGACGGGAAGCGCAAGCTA
195 CCGACGAAACGAGT--GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * **
18291059 TGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCCATGGTATTTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * *
18291124 TATGGCTTGTAAATTAATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * ** * * * * *
18291189 CATTTTTTATTTTCCATAATTTTTGAAACTTTTTACAGTTCGAGA-TTTTCAAAATTTTTTCAGA
388 CGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-GGA
* * * *
18291253 AGGATTTTTGGCCCCAAACTTGATAGACGTGATCCTTGTATTTTTGTTGGTATGCATAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
18291318 TCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
517 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
18291383 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAAGGCTCTTTAAGGGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
18291448 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGTG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
18291513 TGTGCACACCTCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCTGCCAGTCATGTTCTCCGAC
712 TGCGCACA-C-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCAGTCATGTTCTCCGAC
* * * *
18291578 GATGGTGCCTCGACGAAGAAAAATGTGGCACCTGCACATGCCTGAGCCCAGCATGTGCTGCTGCA
775 GATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
18291643 ACCTTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTACGTATGC
840 ACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
18291689 TTAGACTGGGAATGAACTCTATATGCCTATGTCAACCCATGAAATGAACGTGCGGGCGCTCAACC
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
18291754 GGCCAAAGGGACGGGATGTGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTTGTCAATCCT
66 GGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCT
*
18291819 GCTACTGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
18291884 CGACGAAACGAGTGGACGGGTGGGCGGGCACTACGCCGACCAGAGAGAGGGGATGCGCAAGCCGT
196 CGACGAAACGAGT-G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
18291949 GGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* * *
18292014 ATGGCTTGTAAATTCATACAGTGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
*
18292079 GTTTTTTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTCTTTGGAA
389 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT-TTTGGAA
18292144 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
18292208 CAGGTAAAAACCCGAAGTGTAGAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
18292273 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTTTTTAAGGGGGTGTGAGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
18292338 AAGGTTTGATAAGGGATAGGGGGCCAATATAAAGGCCAAGTA-C--CA--CAT----CAT-A--T
648 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * *
18292391 GCG-AGAACCCCCGG-CCCCCCGATCTTCGAAACTCCAATGCCGTCGGTCAGGTTCTCCGACGAT
713 GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG-C-T--GCCA-G---T-C-ATG-T
* * ** * *
18292454 GCTCCGACGATGGTGCC-CGGCGAAGAAAAATATGGCACCAGCACATGCCTGAGCCTAGCATGTG
767 TCTCCGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
18292518 CTGCCGCAACCCTCGG-TCTGG-CTTCGATCCTAGGCTTGGAATGAACTCCATATGC
832 CTGCCGCAACCCTCGGTTC-GGTC-T-GATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
18292573 TTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCGCACAACT
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * ** * * *
18292638 GGCCAGAGGGGTA-GGG-TGCACAACCCGGGGATCGGTCGGGT-CCCCTACTGCGTGCTATCAAT
66 GGCCA-AAGGG-ACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCT-CTACGTGCTGTCGAT
** * * * * * * *
18292700 CCTGCTGTCGTAACCCTTGGTCTGGTCTAATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCC
128 CCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
* * * *
18292765 AACCGACGAAACGA------GCGGGCTGGCACTACGTCGGCTAGAGAGACGGGATGTGCAAGCCG
193 AACCGACGAAACGAGTGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
18292824 TGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
18292889 TATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * ** * * * *
18292954 TGTTTTCTATTTTTTTACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTCTTCGA
388 CGTTTTCTA-TTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGA
* * *
18293019 AGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTTGCATGCA-AAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-
* * * * * *
18293083 TTCAGCTAGAAACTCAAAGTCTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAAA
516 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
18293148 CACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18293213 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGT
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
18293278 GTGTGCACACCTCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCTGCCAGTCATGTTCTCCGA
711 GTGCGCACA-C-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCAGTCATGTTCTCCGA
* * * *
18293343 CGATGGTGCCTCGACGAAGAAAAATGTGGCACCTGCACATGCCTGAGCCCAGCATGTGCTGCTGC
774 CGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * **
18293408 AACCTTTGGTTCGGTCTGATCTTAGACTGGGAATGAACAACGTATGC
839 AACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* ** * * *
18293455 TTAGACTGGGAATGAACTCTGTATGCCTATGTCAATGCACGAAATGAACGTGCGGGCGCTCAACC
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
18293520 GGCCAAAGGGACGGGATGTGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGTTTTCAATCCT
66 GGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCT
*
18293585 GCTACTGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
18293650 CGACGAAACGAGTGGACGGGTGGGCGGGCACTACGTCGACCAGAGAGAGGGGATGCGCAAGCCGT
196 CGACGAAACGAGT-G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
18293715 GGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* * *
18293780 ATGGCTTGTAAATTCATACAGTGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
*
18293845 GTTTTTTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTCTTTGGAA
389 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT-TTTGGAA
18293910 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
18293974 CAGGTAAAAACCCGAAGTGTAGAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
18294039 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTT
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
18294104 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-CCTCATCGCACATCTTG
648 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC-CATCGCACATCATG
* * * * *
18294168 TGCGCATACCGCCCTTGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGAC
712 TGCGCACACC-CCC-CGGCCCCCCCGATCGTCGGAACCCCAATG-C-T--GCCA-G---TC--AT
* ** * *
18294233 GATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCAT
765 G-TTCTCCGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * ** * * *
18294298 GTGCTGCCGCAACCCTTGG-TCTGTTCCAATCTTAGACTGGGAACGAACTCTGCATGC
829 GTGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
18294355 TTAGATTGGGAGTGAACTCCGTATGCCTAAGTGAACCCACGAAATGAGCGTGCGGGAGCTCAGCT
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * ** *
18294420 GGCCAAGGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGACCCCCGT-TGTGTGCTGTCAATCC
66 GGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC-TCTACGTGCTGTCGATCC
* * * *
18294484 TGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAATTCCGTATGCCTAAGCGAA
130 TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18294549 CCGACG-AA--A-T--GAGCGGGCTGGCACTACGCTGGCCAGAGAGATGGGATGCGCAAGCCGTG
195 CCGACGAAACGAGTGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * * *
18294608 GATCGATAGGGTGGTAAGTGGGATTAGGGACATCTTCATATTTCTGCATGCCCATGCCATTTTTA
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
*
18294673 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * * *
18294738 TTTTCTATTTTTCACAAATTTT-GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTCTTCGGAA
390 TTTTCTATTTTTCA-TGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT-TTTGGAA
* * * * *
18294802 GGAGTTTTGGTCCCAACCTTGGTAGACGAGATCCTTGTATTTTTGTTGGCAAGCAAAAAAAAATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
18294867 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
18294932 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
** * * *
18294997 GCTGTTTAATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACATTATGT
648 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* ** * * * *
18295062 GCGCACACCCCCCGGGCCACCCCGATCACCGGAACCCCAATGCCGTCGGTCAAGTTCTCC-AGCG
713 GCGCACACCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCTGCCAGTCATGTTCTCCGA-CG
* * * * *
18295126 ATGGTGCCGCGACAAACAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA
776 ATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
*
18295191 ---------C---C----CTTAGTC-GGG--T---CT--G-AT-C
841 CCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
18295210 TTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACAAGCGTGCAGGTGCTCAGCC
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
18295275 GGCCAGAGCGACGGGATGCGCAAACCGGGGATCGAACGGGTCCCCCTCTACGTGCTGTCGATCCT
66 GGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCT
* * * * *
18295340 GCTGCCGCAACCCTCGGTCTGAT-TCGATCTTAGGCTAGGAATGAACTCCGTATGCCTAAGCCAA
131 GCTACCGCAACCCTCGATCCGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18295404 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTTCGCCGGCCAGAGAGACGGGATGCGCAAGCCG
195 CCGACGAAACGA--GTGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
18295469 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
18295534 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
18295599 CGTTTTCTATTTTTCACGATGTTT-GAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGG
388 CGTTTTCTATTTTTCATGAT-TTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-GG
* *
18295663 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCAC-AAAAC
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAA
* * *
18295727 ATTCAGCTAAAAACTTGAACTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGG
515 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18295791 ACACTTTAATGGCTACGGGCAGCAAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
580 ACACTTTAATGGCTACTGGCAGC-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
18295856 TCTCAAGGTTTGATGAGGG-TAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
644 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
18295920 ATGTGTGCACACCCCCCGG-CCCCCCGATCGTCGAAACTCCAATGCCGCTGGTCAGGTTCTCCGA
709 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT---GCT-GCCA-G---T-C-A
* * * * ** * * * * *
18295984 CGATGCTCCGACGGTGGTGCCTTGGTGAAGAAAAATACGACACTAGCACATGCTCGAGCCCAGTA
764 TG-TTCTCCGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
** * * * * *
18296049 TGTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAGTGAACTCCATATGC
828 TGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18296107 -----CT----A--AA-TC-G-A--CC-----C-A--CA--AAACGAGCATGCAGGCGCTCAGCT
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* ** * * * * *
18296146 AGCCAAAGGGGTGGGATGCGCAAGCTGGGGATCAACCAGGTCCCCCTCTACGTACTGTTGATCCT
66 GGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCT
* * * * * *
18296211 GCTGCTGCAACCCTCGATTCAGTCTGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * **
18296276 TGACGAAACGA--GCGGGCGGGTGGGCACTACGTCAGCTAGAGAGACGGGATGCTAAAGCCGTGG
196 CGACGAAACGAGTGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * *
18296339 AACGATAGGGTGGTAGGTGGGTTCAGGTACATCTTCTTATTTCTGTGTGCCAATGCCATTTTTAT
261 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* *
18296404 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACCCGT
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * *
18296469 TTTCTATTTTCCACGATTTTGAAAACTTTTTGCGGTTCGAGATTTTTTATAATTTTTTTGCAAGG
391 TTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA-AAATTTTTTGGAAGG
* * * *
18296534 ATTTTTGGCCCCAAACTAT--TAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTTC
455 AGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
18296597 AGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
18296662 TTTAATGGCTACTGGTACCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCG
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
18296727 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
18296792 CGCACACCCCCCTCTCGGCCCCCCCGATCATCGAAACCCCAATGCCGCCTA-TCATGTTCTCTAG
714 CGCACA--CCCC-C-CGGCCCCCCCGATCGTCGGAACCCCAATGCTGCC-AGTCATG-----T--
* * * *
18296856 CGATGCTCCGACGATGGTGCC-CCAGGGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGC
767 ---T-CTCCGACGATGGTGCCTCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * **
18296920 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAAACTAGGAATGAACTTTGTATGC
827 ATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* *
18296979 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *** *
18297044 GGCCAGAGAGG-CGGAATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCTGCGTGCTG-CTGATC
66 GGCCAAAG-GGACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTC-GATC
* * * * * *
18297107 CTGGTACCGCAACCGTTGGTCCGGTCCGATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCA
129 CTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * *
18297172 ACCGACGAAACGAACGTGCGGGAGGGCGGGCACTACGCTGGCCAGAGAGACTGGATGCGCAAGCC
194 ACCGACGAAACG-A-GTGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
18297237 GTGGATCAATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* *
18297302 TTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGAC
322 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * *
18297367 TCGTTTTCTATTTTTCATGATTTTCAAAACGTTTTGCGGTTTGAGATTTTTAAAAAAATTTTCGG
387 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTT-TAAAATTTTTTGG
* * * * * * * *
18297432 AAGGAGTTTTGGTCCCAAATTTGGTAAACATGATCCTTTTATTTTTATAGGCACGCACAAAAAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
18297497 TTCAGTTAAAAACTTGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
18297562 CACTTTAATGGCTACTGGTACCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
18297627 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCAT
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
18297692 GTGCGCACACCCCCCTCTCGGCCCCCCCGATCATCGAAACCCCAATGCCGCCTA-TCATGTTCTC
711 GTGCGCACA--CCCC-C-CGGCCCCCCCGATCGTCGGAACCCCAATGCTGCC-AGTCATG-----
* * * *
18297756 TAGCGATGCTCCGACGATGGTGCC-CCAGGGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCT
766 T-----T-CTCCGACGATGGTGCCTCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * **
18297820 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAAACTAGGAATGAACTTTGTATGC
824 AGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* *
18297882 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *** * *
18297947 GGCCAGAGAGG-CGGAATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCTGCGTGCTGTTGATCC
66 GGCCAAAG-GGACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCC
* * * * **
18298011 TGGTACCGCAACCGTTGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18298076 CCGACGAAACGAACGTGCGGGAGGGCGGGCACTTCGCTGGCCAGAGAGACTGGATGCGCAAGCCG
195 CCGACGAAACG-A-GTGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
18298141 TGGATCAATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * *
18298206 TATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACC
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * *
18298271 CGTTTTCTATTTTCCACGATTTTGAAAACTTTTTGCGGTTCGAGATTTTTTATAATTTTTTTGCA
388 CGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA-AAATTTTTTGGA
* * * *
18298336 AGGATTTTTGGCCCCAAACTAT--TAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAT
452 AGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
18298399 TTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
18298464 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
18298529 TCGATGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTT
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * ** * * * ** * *
18298594 GTACGCACACCCCCCCGGCCCCTCTGATCCCCGTAAGCCAAATGCCACCGGTCAGGTTCTCTGGC
711 GTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCAGTCATGTTCTC---C
* *
18298659 GATGCTCCAACGATGGTGGCC-CGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
772 ---G-----ACGATGGT-GCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
18298723 TGTGCTGTCACAA-CC-C-G--C-G---G----T---CT----A-G---TCCG-AT-C
828 TGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* ** * * *
18298755 TTAGACTGGGAATTAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGACGCTCAGCC
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * **
18298820 GGCCAGAGGGGCGGGATGCGCATGTCGGGGTTCGGTCGGGTCCCCCTCTACGTGCTG-CTGATCC
66 GGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTC-GATCC
* * * * * * * *
18298884 TACTGCCACAACCCTCTATCTGATCTGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCAA
130 TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
18298949 CCGACGAAACAAACGGGTAGACGGCCGGGCAGGCACTATGCCGGCCAGAGAGATGGGATGCGCAA
195 CCGACG----AAACGAGT-G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * **
18299014 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTTATATTTTTGCGTGCCAATACTG
254 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
18299079 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGAC
319 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
18299144 AACTCGTTTTCTATTTTTTATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
384 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTT
* * *
18299209 TGGAAGGAGTTTTGGCCCCAAACTAT--TAGACATGGTCCTTGTATTTTTGTTGGCATGCATAAA
448 TGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18299272 AAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAACGTGTCCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
18299337 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18299402 GTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
18299467 TCTTGTGCGCACACCCCCCGG-CCCCCCGATCGTCGAAACCCCAATG-T-CATCGGTTAGGTTCT
707 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGC--CAGTCATGTTCT
* * *
18299529 CCGACGA---TGCTTC-AGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTT
770 CCGACGATGGTGCCTCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * * * *
18299590 GTTGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
834 GCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
18299642 TTAGACTGGGAATGAACTCTGTATGCTTAAGTCAACCCACTAAACAAGCTTACGGGCGTTCAGCC
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * **
18299707 GGCCAAAGGGGCAGGATGCACAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTGCTGCCGATTAT
66 GGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCT
* * * * **
18299772 GCTGCAGCAACCCTCGGTCCGGT-TCGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
131 GCTACCGCAACCCTCGATCCGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
18299836 CCAACGAAACGA------GCGGGCTGGCACTACGTCGGCCAGAGAGACAGGATACGAAAGTCATG
195 CCGACGAAACGAGTGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * **
18299895 GATCGGTAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
18299960 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * ** * * *
18300025 TTTTTTATTTTTCATGA-TTTCTGAAACTTTTTATGTTTCGGGATTTTTTAAAAATTTTTCGGTA
390 TTTTCTATTTTTCATGATTTTC-AAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTGGAA
*
18300089 GGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
18300154 CAGCTAAACACTTC-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
518 CAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
18300218 ACTTTAATGGCTACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
18300283 CAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACGTCATG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
18300348 TGTGCACACCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCAGCCGGTCAGGTTCTCCGGTGA
712 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCAGTCA-----T---GT--
* * * * *
18300413 TGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGT
767 T-CTCCGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
18300478 GCTGTCGCAACCCTCGG-TCTGGTCCGATCTTAGACTAGGAATGAACTTCGTATGC
831 GCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18300533 TTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACGCACGAAACGAACGTGCAGGCGCTCAGCC
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
** * * * * *
18300598 AACTAGAGGGACGGGATG-GCAAGCCGGGGATCG-CCTGGGTCCCCTTCTATGTGCTATCGATCC
66 GGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGACC-GGGTCCCCCTCTACGTGCTGTCGATCC
* * * * * * * *
18300661 TGGTACTGTAACCCTTCG-TCCGATCTGATCTTAGGCTGGGAATGAACTCTGTATGACTAAGCCA
130 TGCTACCGCAACCC-TCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * *
18300725 ACCGATGAAAGGAGTGGGCGGGCGGGCAGGCAGGCACAACGCCGGCCAGAGAGACGGGATGCGCA
194 ACCGACGAAACGAGT--GCGGGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
18300790 AGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCCTCATATTTCTATGTGCCAATGCC
253 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * ** *
18300855 ATTTTTTTGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATATGAAGTTTCATGGCAAGG
318 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** ** * * *
18300920 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCAGTTTGAGATTTTTTAAAATTTTT
383 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* *
18300985 TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCACAAAA
448 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
18301050 AAATTCAACTGAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
513 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18301115 AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAG
578 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
18301180 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCA-CCATTTGCACA
643 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACA
* * ** * * *
18301244 TCATATGCGCACACCCCCCGG--CCCCCGATCG-CTGGAACCCAAATGCCACCGGTCAGGTTCTT
707 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCTGCCAGTCATGTTCTC
* * * * * * *
18301306 CGACGATGCT--CT-GGCGAAGAGAAATGCGGCACTATCACATGCCCGAGCCTAGCATATGCTGC
771 CGACGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * *
18301368 CGTAACCCTCGGTCCGGTCTGATCTTAGACTGGAAATGAACTCCGTATGC
836 CGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * **
18301418 TTAGGCTGGGAATGAACT-TCGTATGCCTACGTCAACCCACGAAACAAGCGTGTGGGCGCTCAAT
1 TTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
18301482 CGGCCAAA-GGAGCGGGATGCGCAAGCCGGGGTTCGACCGGGTCCCCCTCTTCATGCTACCAATC
65 CGGCCAAAGGGA-CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATC
** * * ** * ** *
18301546 CTGCTGTCGTAA-TCTTTAGCTAGTCTGATCTTAGAC-AGGGAATGAACTCTGTATGCCTAA-CC
129 CTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCC
* * *
18301608 AACCGACGAAACAAGCGGGCGGGTGCGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
193 AACCGACGAAAC--GAGTGC-GG-GCG-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
18301673 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
252 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
*
18301738 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTACATGGCAAG
317 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
18301803 CCTTTACAAG
Statistics
Matches: 8764, Mismatches: 1049, Indels: 607
0.84 0.10 0.06
Matches are distributed among these distances:
854 2 0.00
855 169 0.02
856 4 0.00
857 1 0.00
858 1 0.00
859 2 0.00
860 22 0.00
861 50 0.01
862 123 0.01
863 348 0.04
864 26 0.00
865 22 0.00
866 107 0.01
867 337 0.04
868 12 0.00
869 10 0.00
870 4 0.00
871 194 0.02
872 121 0.01
873 197 0.02
874 16 0.00
875 256 0.03
876 471 0.05
877 714 0.08
878 3 0.00
879 2 0.00
880 8 0.00
881 75 0.01
882 213 0.02
883 143 0.02
884 386 0.04
885 199 0.02
886 63 0.01
887 178 0.02
888 43 0.00
889 819 0.09
890 378 0.04
891 169 0.02
892 294 0.03
893 239 0.03
894 7 0.00
896 6 0.00
897 5 0.00
898 139 0.02
899 122 0.01
900 282 0.03
901 270 0.03
902 643 0.07
903 868 0.10
904 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCT
GCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGTGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCAGTCATGTTCTCCGACGATGGT
GCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
GGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
Found at i:18294380 original size:26 final size:26
Alignment explanation
Indices: 18294328--18294380 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
18294318 CTGTTCCAAT
*
18294328 CTTAGACTGGGAACGAACTCTGCATG
1 CTTAGACTGGGAACGAACTCCGCATG
* ** *
18294354 CTTAGATTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGCATG
18294380 C
1 C
18294381 CTAAGTGAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGCATG
Found at i:18297002 original size:26 final size:26
Alignment explanation
Indices: 18296952--18297004 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18296942 CCGGTCCGAT
**
18296952 CTTAAACTAGGAATGAACTTTGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* *
18296978 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
18297004 C
1 C
18297005 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:18297905 original size:26 final size:26
Alignment explanation
Indices: 18297855--18297907 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18297845 CCGGTCCGAT
**
18297855 CTTAAACTAGGAATGAACTTTGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* *
18297881 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
18297907 C
1 C
18297908 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:18299644 original size:26 final size:26
Alignment explanation
Indices: 18299615--18299670 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
18299605 CCAGTCCGAT
18299615 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18299641 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18299667 CTTA
1 CTTA
18299671 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18300542 original size:26 final size:26
Alignment explanation
Indices: 18300506--18300558 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18300496 CTGGTCCGAT
18300506 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
18300532 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
18300558 C
1 C
18300559 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:18301420 original size:26 final size:26
Alignment explanation
Indices: 18301391--18301443 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18301381 CCGGTCTGAT
18301391 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* * *
18301417 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18301443 C
1 C
18301444 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18302519 original size:746 final size:732
Alignment explanation
Indices: 18301075--18302548 Score: 2080
Period size: 746 Copynumber: 2.0 Consensus size: 732
18301065 CTCGAAGTGC
18301075 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAC
1 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAC
*
18301140 AAACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
66 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT-ATGAGGGATAGG
* *
18301205 GGGCCAATATAAGGGCCAAGTAGCAGCACCATTTGCACATCATATGCGCACACCCCCCGGCCCCC
130 GGGCCAATATAAGGGCCAAGTACCAGCACCATTCGCACATCATATGCGCACACCCCCCGGCCCCC
* * *
18301270 GATCGCTGGAACCCAAATGCCACCGGTCAGGTTCTTCGACGATGCTCTGGCGAAGAGAAATGCGG
195 GATCGCCGGAACCCAAATGCCACCGGTCAGGTTCTCCGACGATGCTCTGGCGAAGAGAAATGCAG
* * * *
18301335 CACTATCACATGCCCGAGCCTAGCATATGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTG
260 CACCAGCACATGCCCGAGCCTAGCATATGCTGCCGCAACCCTCGGTCCGGACTGATCTTAGACTG
* * * *
18301400 GAAATGAACTCCGTATGCTTAGGCTGGGAATGAACTTCGTATGCCTACGTCAACCCACGAAACAA
325 GAAATGAACTCCATATGCTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACAA
* * * *
18301465 GCGTGTGGGCGCTCAATCGGCCAAAGGAGCGGGATGCGCAAGCCGGGGTTCGACCGGGTCCCCCT
390 GCGTGTGGGCACTCAATCGGCCAAAGGAGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCT
** * * **
18301530 CTTCATGCTACCAATCCTGCTGTCGTAATCTTTAGCTAGTCTGATCTTAGACAGGGAATGAACTC
455 CTTCATGCTACCAATCCTGCTACCGCAACCTCAAGCTAGTCTGATCTTAGACAGGGAATGAACTC
* *
18301595 TGTATGCCTAACCAACCGACGAAACAAGCGGGCGGGTGCGCGAGCGGGCACTACGTCGGCCAGAG
520 TGTATGCCTAACCAACCGACGAAACAAGCGAGCGGGTGCGCGAGCGGGCACTACGCCGGCCAGAG
* *
18301660 AGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
585 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTC
* *
18301725 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
650 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAA
18301790 GTTACATGGCAAGCCTTT
715 GTTACATGGCAAGCCTTT
* *
18301808 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGC
1 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAC
*
18301873 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TT-TGAGGGATAGGG
66 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTATGAGGGATAGGG
* * *
18301936 GGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCCTGTGCGCACACCCCCTGGCCCCC
131 GGCCAATATAAGGGCCAAGTACCAGCA-CCATTCGCACATCATATGCGCACACCCCCCGG-CCCC
* * * ** *
18302000 CGATCGCCGGATCCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATAGTGCCCCGA
194 CGATCGCCGGAACCCAAATGCCACCGGTCAGGTTCTCCGACGATGCTCTGGCG--A--------A
* * *
18302065 CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTG-TGCAGCCCTCGGTCCGG
249 -G-AG--AAATGCAGCACCAGCACATGCCCGAGCCTAGCATATGCTGCCGCAACCCTCGGTCCGG
*
18302129 ACTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATAAACTTCGTATGCCTAAGT
310 ACTGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGAATAAACTTCGTATGCCTAAGT
* * * * * *
18302194 CAACCCACGAAACGAGCGTGTGGGCACTGAGTCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGAT
375 CAACCCACGAAACAAGCGTGTGGGCACTCAATCGGCCAAAGGAGCAGGATGCGCAAGCCGAGGAT
** * * * * * * *
18302259 CGGTCGGGTCCCTCTCTGT-GTGCTGCCGATCCTGCTACCGCAACCCTCAATCTGGTTTGATCTT
440 CGACCGGGTCCCCCTCT-TCATGCTACCAATCCTGCTACCGCAA-CCTCAAGCTAGTCTGATCTT
* * * *
18302323 AGACTGGGAATGAACT-TCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGTGGGCGGGCG
503 AGACAGGGAATGAACTCT-GTATGCCTAA-CCAACCGACGAAACAAGCGAGCGGGTGCGCGAGCG
* *
18302387 GGCACTACGCCGGCCAGAGAGATGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
566 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
18302452 AGGCACATCCTCATATTTCTTA-ATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACATTGGT
631 AGGCACATCCTCATATTTC-TACATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGT
*
18302516 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
695 CCCTTAAGCCTTCACGTGAAGTTACATGGCAAG
18302549 ACGACTCATT
Statistics
Matches: 651, Mismatches: 69, Indels: 29
0.87 0.09 0.04
Matches are distributed among these distances:
730 62 0.10
731 52 0.08
732 2 0.00
733 111 0.17
741 1 0.00
742 1 0.00
743 2 0.00
744 161 0.25
745 76 0.12
746 181 0.28
747 2 0.00
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (732 bp):
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCATTCGCACATCATATGCGCACACCCCCCGGCCCCCG
ATCGCCGGAACCCAAATGCCACCGGTCAGGTTCTCCGACGATGCTCTGGCGAAGAGAAATGCAGC
ACCAGCACATGCCCGAGCCTAGCATATGCTGCCGCAACCCTCGGTCCGGACTGATCTTAGACTGG
AAATGAACTCCATATGCTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACAAG
CGTGTGGGCACTCAATCGGCCAAAGGAGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTC
TTCATGCTACCAATCCTGCTACCGCAACCTCAAGCTAGTCTGATCTTAGACAGGGAATGAACTCT
GTATGCCTAACCAACCGACGAAACAAGCGAGCGGGTGCGCGAGCGGGCACTACGCCGGCCAGAGA
GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCT
ACATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAG
TTACATGGCAAGCCTTT
Found at i:18303055 original size:26 final size:26
Alignment explanation
Indices: 18303026--18303078 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18303016 CCGATCTGAT
18303026 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18303052 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18303078 C
1 C
18303079 GTAAGTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18303348 original size:155 final size:154
Alignment explanation
Indices: 18303052--18303419 Score: 450
Period size: 155 Copynumber: 2.4 Consensus size: 154
18303042 ACTCCGTATG
* * *
18303052 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAAAAC-ACGAAACGAGTGTGCGGGCACTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACCGACGAAACGA----GCGGGCACTCAA
* * * *
18303116 CCGGCCAGAGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCATGTTAGCAATCC
61 CCGGCCAGAGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCATGCTACCAATCC
*
18303181 TGCTACCACAACCCTCAATCCGGTATAAT
126 TGCTACCACAACCCTCAATCCGGTACAAT
* * ** *
18303210 GTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGTTCAATCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCACTCAACCGGC
* * *
18303275 CAGAAGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTACCAATCTTGCT
66 CAG-AGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCATGCTACCAATCCTGCT
* * ** *
18303340 GCCGCAACCCTCGGTCCGGTCCAAT
130 ACCACAACCCTCAATCCGGTACAAT
* * * *
18303365 CTTAGACTAGGAATCAACTTCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCA
18303420 GGGGGGCGGG
Statistics
Matches: 180, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
154 17 0.09
155 121 0.67
157 4 0.02
158 38 0.21
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (154 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCACTCAACCGGC
CAGAGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCATGCTACCAATCCTGCTA
CCACAACCCTCAATCCGGTACAAT
Found at i:18304097 original size:26 final size:26
Alignment explanation
Indices: 18304068--18304120 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18304058 CCGGTCTGAT
18304068 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18304094 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18304120 C
1 C
18304121 CTACATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18304841 original size:26 final size:26
Alignment explanation
Indices: 18304812--18304864 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18304802 CCGGACCGAT
*
18304812 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
*
18304838 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
18304864 C
1 C
18304865 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCGTATG
Found at i:18305197 original size:748 final size:731
Alignment explanation
Indices: 18303750--18305225 Score: 2040
Period size: 748 Copynumber: 2.0 Consensus size: 731
18303740 ACTCGAAGTG
*
18303750 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAA
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAA
*
18303815 CAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT-ATGAGGGATAG
* * *
18303880 GGGGCCAATATAAGGGCCAAGTACCAGCACCATTTGCACATCATATACGCACACCCCCCGGCCCC
130 GGGGCCAATATAAGGGCCAAGTACCAGCACCATTCGCACATCATATACGCACACCACCCGCCCCC
* *
18303945 CCGATCGCTGGAACCCAAATGCCACCGGTCAGGTTCTTCGGCGATGCTCTGGCGAAGAGAAATGC
195 CCGATCGCTGGAACCCAAATGCCACCGGTCAGGTTCTCCGGCGATGCTCTGGCGAAGAAAAATGC
* * * * *
18304010 GGCACTATCACATGCCAGAGCCTAGCATATGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC
260 AGCACCAGCACATGCCAGAGCCTAGCATATGCTGCCGCAACCCTCGGTCCGGACCGATCTTAGAC
* * * *
18304075 TGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTACATCAACCCACGACAC
325 TGAGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTACATCAACCCACGAAAC
* * * *
18304140 GAGCGTGTGGGCGCTCAGTCGGCCAAAGGAGCGGGATGCGTAACCCGGGGTTCGACAGGGTCCCC
390 GAGCGTGCGGGCACTCAGCCGGCCAAAGGAGCGGGATGCGTAACCCGGGGATCGACAGGGTCCCC
* * * *
18304205 CTCTTCATGCTGCAATCTGCTGCGCAACCTTCAGTCTGGTCTGATCTTAGATAGGGAATGAACTC
455 CTCTTCATGCTGCAATCTGCTCCGCAACCCTCAATATGGTCTGATCTTAGATAGGGAATGAACTC
* *
18304270 CGTATGCCTAACCAACCGACGAAACAAGCGGGCGGGTGGGCGAGCGGGCACTACGTCGGCCAGAG
520 CGTATGCCTAACCAACCGACAAAACAAGCGAGCGGGTGGGCGAGCGGGCACTACGTCGGCCAGAG
* *
18304335 AGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTC
585 AGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATACTCATATTTC
* *
18304400 TATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
650 TATATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAA
18304465 GTTACATGGCAAGCCTT
715 GTTACATGGCAAGCCTT
* *
18304482 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAA
*
18304547 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TT-TGAGGGATAGG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTATGAGGGATAGG
* * *
18304610 GGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCCTGTGCGCACAACCACCCGACCC
131 GGGCCAATATAAGGGCCAAGTACCAGCA-CCATTCGCACATCATATACGCAC-ACCACCCG-CCC
* * * ** *
18304674 CCCCGATCG-TCGGATCCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTTCGGCGATAGTACC
193 CCCCGATCGCT-GGAACCCAAATGCCACCGGTCAGGTTCTCCGGCGATGC-T---C--T-G----
* * *
18304738 CCGACGAAGAAAAATG-AGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAGCCCTCGGT
246 --G-CGAAGAAAAATGCAGCACCAGCACATGCCAGAGCCTAGCATATGCTGCCGCAACCCTCGGT
18304802 CCGGACCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCT
308 CCGGACCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCT
* * * * *
18304867 A-AGTCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGGCCAGAGGGGCGGGATGCGTAAGCCG
373 ACA-TCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAAAGGAGCGGGATGCGTAACCCG
* * * * * *
18304931 GGGATCGGTC-GGGTCCCCTTCTGT-GTGCTGCCGATCCTGCTACCGTAACCCTCAATATGGTTT
437 GGGATC-GACAGGGTCCCCCTCT-TCATGCTG-CAAT-CTGCT-CCGCAACCCTCAATATGGTCT
* *
18304994 GATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCGACCGACAAAACGAGCGAGCGGGTGGG
497 GATCTTAGA-TAGGGAATGAACTCCGTATGCCTAA-CCAACCGACAAAACAAGCGAGCGGGTGGG
* *
18305058 C-AGGCGGGCACTACG-CAGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
560 CGA-GCGGGCACTACGTC-GGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
18305121 GTGGGTTTAGGCACATCCTCATATTTCT-TCATGCCAATGCCATTTTTATGGCTTGTAAATTCAA
623 GTGGGTTTAGGCACATACTCATATTTCTAT-ATGCCAATGCCATTTTTATGGCTTGTAAATTCAA
*
18305185 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
687 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTACATGGCAAG
18305226 ACGACTCGTT
Statistics
Matches: 653, Mismatches: 62, Indels: 42
0.86 0.08 0.06
Matches are distributed among these distances:
729 54 0.08
730 11 0.02
731 44 0.07
732 111 0.17
735 1 0.00
737 1 0.00
738 1 0.00
743 1 0.00
744 177 0.27
745 17 0.03
746 5 0.01
747 50 0.08
748 180 0.28
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.23
Consensus pattern (731 bp):
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAA
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCATTCGCACATCATATACGCACACCACCCGCCCCCC
CGATCGCTGGAACCCAAATGCCACCGGTCAGGTTCTCCGGCGATGCTCTGGCGAAGAAAAATGCA
GCACCAGCACATGCCAGAGCCTAGCATATGCTGCCGCAACCCTCGGTCCGGACCGATCTTAGACT
GAGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTACATCAACCCACGAAACG
AGCGTGCGGGCACTCAGCCGGCCAAAGGAGCGGGATGCGTAACCCGGGGATCGACAGGGTCCCCC
TCTTCATGCTGCAATCTGCTCCGCAACCCTCAATATGGTCTGATCTTAGATAGGGAATGAACTCC
GTATGCCTAACCAACCGACAAAACAAGCGAGCGGGTGGGCGAGCGGGCACTACGTCGGCCAGAGA
GACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATACTCATATTTCT
ATATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAG
TTACATGGCAAGCCTT
Found at i:18305740 original size:26 final size:26
Alignment explanation
Indices: 18305704--18305756 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18305694 CCGATCCTAT
18305704 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18305730 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18305756 C
1 C
18305757 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18306222 original size:890 final size:887
Alignment explanation
Indices: 18304482--18310614 Score: 7557
Period size: 890 Copynumber: 6.9 Consensus size: 887
18304472 GGCAAGCCTT
*
18304482 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
18304547 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TT--TGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
18304609 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTGCGCACAACCACCCGACCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCC
* * * *
18304674 CCCCGATCGTCGGATCCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTTCGGCGATAGTACCC
195 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGG-G--G-AT--GC--T-G--CCC
* * * * *
18304739 CGACGAAGAAAAATG-AGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAGCCCTCGGTC
249 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTC
* * *
18304803 CGGA-CCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCT
314 C-GATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
18304867 AAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGG
378 AAGTCAAACCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGCGGGATGCGCAAGCCGG
* ** * ** * ** * *
18304932 GGATCGGTCGGGTCCCCTTCTGTGTGCTGCCGATCCTGCTACCGTAACCCTCAATATGGTTTGAT
442 GGATCGGCCGGGTCCCC-TCTGCATGCTGCCAATCCTGCTACCACAACCCTCAGTCCGGTATAAT
* * * * * *
18304997 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACCGACAAAACGAGCGAGCGGGTGGGCAGG
506 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGG-TGG
* **
18305062 CGGGCACTACGCAGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
570 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
18305127 TTAGGCACATCCTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGG
635 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
**
18305192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
700 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
*
18305257 AAACTTTTTGCGGTTCATGATTTTTTAAAATTATTTTGGAAGGAGTTTTGGCCCCAAACTTGGTT
765 AAACTTTTTGCGGTTCA-GATTTTTTAAAATT-TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
18305322 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
828 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
18305382 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
18305447 CAAATCTGTAAAATCTCAAATGCTCTGTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
18305512 GGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCGGCCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * *
18305577 CCCGATCGCCAGAACCCCAATGCCGCCGGTCAGATTCTCTGGGGATGCTGCCCCGACGAAGAAAA
196 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGGGATGCTGCCCCGACGAAGAAAA
* * * * *
18305642 ATGCGGCACCAGCACATGCCCGAGCCCAGCATATGCTACCGTAAACCTTAGTCCGATCCTATCTT
261 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCCGATCTT
*
18305707 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAACATG
326 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATG
* * ** *
18305772 GAACGAGTGTGCGGGCGCTCAGTTGGCCAGAGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTC
391 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTC
* * *
18305837 CCCGTCTGTATGCTGCCAATCCTGCTACTACAACCCTCAGTCCGGTATAATGTTAGACTGGGAAT
456 CCC-TCTGCATGCTGCCAATCCTGCTACCACAACCCTCAGTCCGGTATAATCTTAGACTGGGAAT
* *
18305902 GAACT-CGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGAGCGGGTGGCCGGGCACTACGCCG
520 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGTGG-CGGGCACTACGCCG
** *
18305966 GCCAGAGAGACAGGATGCGTGAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
584 GCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
**
18306031 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
649 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
**
18306096 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
714 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
*
18306161 TCATGATTTTTTAAAATTATTTTGGAAGGAGTTTTGGCCCCAAACTTGGTTGACATGATCCTTGT
779 TCA-GATTTTTTAAAATT-TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
* *
18306226 ATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
842 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
18306272 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
18306337 CAAATCTGTAAAATCTCAAATGCTCTGTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
18306402 GGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCGGCCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * *
18306467 CCCGATCGCCAGAACCCCAATGCCG-CAGGTCAGATTCTCTGGGGATGCTACCCCGACGAAGAAA
196 CCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCTGGGGATGCTGCCCCGACGAAGAAA
* * * * * *
18306531 AATGCGGCACCAACACATGCCCGAGCCCAGCATATGCTACCGTAAACCTTAGTCCGATCCTATCT
260 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCCGATCT
*
18306596 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAACAT
325 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCAT
* * * * *
18306661 GGAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGCGGGATGCGCAAGCTGGGGATCGGCCGAGT
390 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGT
* * *
18306726 CCCCGTCTGTATGCTGCCAATCCTGCTACTACAACCCTCAGTCCGGTATAATGTTAGACTGGGAA
455 CCCC-TCTGCATGCTGCCAATCCTGCTACCACAACCCTCAGTCCGGTATAATCTTAGACTGGGAA
* * *
18306791 TGAACTTCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGAGCGGGTGGCCGGGCACTACGCC
519 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGTGG-CGGGCACTACGCC
** *
18306856 GGCCAGAGAGACAGGATGCGTGAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
583 GGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
18306921 CATATTTCTGCGTGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
648 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
18306986 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGG
713 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGG
*
18307051 TTCGAGATTTTTTAAAATTTTTTGGTAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
778 TTC-AGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
* * *
18307116 ATTTTTATTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTA
842 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
** *
18307162 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTGGACACTTTAATGGCTACTGGCAA
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
18307227 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
18307292 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCT
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
*
18307357 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTAACGGCGATGCTCCGGCGATGGTGCCC
196 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-----C--TG----GG-GATGCTGCCC
* * ** * * * * *
18307422 TGGCGAAGAAAAATGCTACCCCAGCACTTGTCCGAGCCCAGCATGTGATGCCGTAACCCTCGGTC
249 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGT-
* *
18307487 CCGGGATCCCGATCTTAGACTGGGAATTTAACTCCGTATGCTTAGACTGGG-ATGAACTCCGTAT
313 CC--GAT-CCGATCTTAGACTGGGAA-TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
18307551 GCCTAAGTC-CACCATGAAACGAGTGTGCGGGCGCTCCGCTGGCCAGAGGG-GCGGATGCACAAG
374 GCCTAAGTCAAACCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCG-GGATGCGCAAG
* * * ** * * *
18307614 CCGAGGATTGGTCAGATTCCCCTCTG--TG-TG------CTG---CCGCAACCCTCAGTCCTGTC
438 CCGGGGATCGG-CCGGGTCCCCTCTGCATGCTGCCAATCCTGCTACCACAACCCTCAGTCCGGTA
* *
18307667 TCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCTGATGAAACGA-CGGG-G-GCGG
502 TAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-GACGAAACGAGCGGGCGAGCGG
* * * * * *
18307729 GCGGGCGGGCACCATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGG
566 G-TGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
18307794 TGGGTTTAGGTACATCCTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
630 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
18307859 TATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
695 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
18307924 TTTCAAAACTTTTTACGATTCAGGATTTTCTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
760 TTTCAAAACTTTTTGCGGTTCA-GATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACT
** *
18307989 TCATAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTC-ACAGT
823 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGT
18308053 G
887 G
*
18308054 TACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
18308119 CAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGCTGTGAGTTTTCGAGGTTTGATGAAGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
18308183 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCACCCGG-CC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCC
* * *
18308247 CCCCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC
195 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--TG--G----G--GATGCTGCCC
* * * * *
18308312 CGAGGAAGAAAAATGCGGCACCAGCACATGGCCGAGCCCAACATGTGCTGCAGCAA-CC-C--T-
249 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTC
18308372 CG----G-TC-----C---G---G---TCCA-AT-CTTAGACTGGGAATGAACTCCGTATGCCTA
314 CGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
18308416 AGTCAATCCACGAAACGAGCGTGCGGGGCGCTCAGACAGCCAGAGGG-GTGAGATGCGCAAGCCG
379 AGTCAAACCATGAAACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGGGCG-G-GATGCGCAAGCCG
* * * * *
18308480 GGGATCGGTCGGGTCCCTCTCTACATGCTGCCAATCCTGC-AGCCACAAACCTCAGTTCAGTCA-
441 GGGATCGGCCGGGTCCC-CTCTGCATGCTGCCAATCCTGCTA-CCACAACCCTCAGTCCGGT-AT
* * *
18308543 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGGACGAAACGAGCGGGCG-G-GCG-
503 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGT
* * * *
18308605 GGCGAGCACCTACGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
568 GGCGGGCA-CTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** * * *
18308670 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCGTTTTGATGGCTTGTAAATTCATAAAA
632 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
18308735 TGGTCCCTTAAGCCTTCCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTATACAAT
697 TGGTCCCTTAAGCCTT-CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT-CACGAT
* * *
18308800 TTTCAAAAAC-TTTTACGGTT-AGGGATTTTTTAAAATTTTTCGAAAGGAGTTTT-GCCCCAAAC
760 TTTC-AAAACTTTTTGCGGTTCA--GATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAAC
* * * *
18308862 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGCAC
822 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAG
18308927 TG
886 TG
* *
18308929 TACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
18308994 CAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGCTAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
18309059 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGGCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC
* *
18309124 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGAT--T-----------G---
195 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGGGATGCTGCCCCGACGAAGAAA
* ** * * *
18309173 --T---------G--C---CCCGAGCCCAGTATGTGCTATCGCAACCCTCGGTCC-AGTCCGCTC
260 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGA-TCCGATC
* * * * *
18309221 TTACACTGGGAATGAACTCCGTATGCTTAGACTAGGATTGAACTCCGTATGCCTAAGTCAACCCA
324 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCA
* * * *
18309286 CGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGC
389 TGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGCGGGATGCGCAAGCCGGGGATCGGCCGG
* * * * * **
18309351 GTACCCCTCTGCATGCTACCGATGCTGCTGCCACAACCCTCAGTCCAGTCCAATCTTAGACTGGG
453 GT-CCCCTCTGCATGCTGCCAATCCTGCTACCACAACCCTCAGTCCGGTATAATCTTAGACTGGG
* * ** * *
18309416 AATGAACTCCGTATGCCTAAGCCTACCGACGAAA--A------GTGTTGGTGGCGGGCATTACCC
517 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGTGGCGGGCACTACGC
* **
18309473 CGACCAGAGAGAC-GTGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGG-TTAGGTTCAT
582 CGGCCAGAGAGACAG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG-GGTTTAGGCACAT
* *
18309536 CATCATA-TT-TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACTATGGTCCCTTAAGC
645 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
18309599 CTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTGTTTTTCACGATTTTCAAAACTTTTTG
710 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTG
* * * * *
18309664 TGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCC
775 CGG-TTCAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
* *
18309729 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAATTG
838 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
18309779 TACAACATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTC-GAAGACTTTAATTGCTACTGGCA
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCA
18309843 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-GAGGTTTGATGAGGGATA
65 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
18309907 GGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCACACATCATGTGCGCACACCCCCCGG-TC
130 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * * *
18309971 CCCCGATCGT-TGAAACCCAATGCCGTCGGTCAGGTTCTTTGGTGATGCT-CCGACGATGGTGTC
195 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGGGATGCTGCC-CCGA-------
* * * * *
18310034 TCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCGCAGTATGTGCTGCTGCAACCCTCAGT
252 -C---GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGT
* *
18310099 CC-AGTCCGATCTTAGACTGAGATTGAACTCC--A----TAGACTGGGAATGAACTCCGTATGCC
313 CCGA-TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
18310157 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCGGGATGCGCAAGCC-
377 TAAGTCAAACCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG-GGCGGGATGCGCAAGCCG
* * * * * * ** * *
18310221 GGGATCAGCTGGGTCACCCTCTACATGCTCCCGATCCTGCTGCCGTAACCCTCAG-CTGGTCTAA
441 GGGATCGGCCGGGTC-CCCTCTGCATGCTGCCAATCCTGCTACCACAACCCTCAGTCCGGTATAA
* * **
18310285 TCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCGAACTAACGAAACGAGCGGGCAGGCAGGCGG
505 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-A-GC--
* * *
18310350 GCAGGCGGGCGGGCACTACGTCGAG-CAGTGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTG
564 G--GG-TGGCGGGCACTACGCCG-GCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTG
*
18310414 GTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT-GCTTGTAAATT
625 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * * * *
18310478 CATACGATGTTCCTTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTC
690 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
** *
18310543 ACGATTTTGGAAA-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
755 ACGATTTTCAAAACTTTTTGCGGTTC-AGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCC
18310607 AAACTTGG
818 AAACTTGG
18310615 AGNNNNNNNN
Statistics
Matches: 4649, Mismatches: 403, Indels: 364
0.86 0.07 0.07
Matches are distributed among these distances:
834 20 0.00
835 2 0.00
836 1 0.00
837 1 0.00
838 1 0.00
839 2 0.00
843 1 0.00
844 2 0.00
846 32 0.01
847 11 0.00
848 15 0.00
849 102 0.02
850 176 0.04
851 98 0.02
852 5 0.00
853 65 0.01
854 9 0.00
855 1 0.00
857 1 0.00
858 3 0.00
859 134 0.03
860 81 0.02
861 19 0.00
862 25 0.01
863 22 0.00
864 1 0.00
865 2 0.00
866 5 0.00
868 1 0.00
870 1 0.00
871 1 0.00
872 4 0.00
873 7 0.00
874 175 0.04
875 229 0.05
876 126 0.03
877 48 0.01
881 48 0.01
882 47 0.01
883 83 0.02
884 2 0.00
885 1 0.00
886 2 0.00
887 5 0.00
888 1 0.00
889 61 0.01
890 1215 0.26
891 718 0.15
892 312 0.07
893 61 0.01
894 10 0.00
895 1 0.00
896 5 0.00
897 8 0.00
898 121 0.03
899 84 0.02
900 131 0.03
901 5 0.00
902 106 0.02
903 63 0.01
904 1 0.00
905 60 0.01
906 47 0.01
907 22 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (887 bp):
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGGGATGCTGCCCCGACGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGATCCGATCTT
AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATG
AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTC
CCCTCTGCATGCTGCCAATCCTGCTACCACAACCCTCAGTCCGGTATAATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGTGGCGGGCACTACGCCGGC
CAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTC
AGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
Found at i:18306630 original size:26 final size:26
Alignment explanation
Indices: 18306594--18306646 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18306584 CCGATCCTAT
18306594 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18306620 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18306646 C
1 C
18306647 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18307550 original size:25 final size:27
Alignment explanation
Indices: 18307500--18307552 Score: 83
Period size: 25 Copynumber: 2.0 Consensus size: 27
18307490 GGATCCCGAT
*
18307500 CTTAGACTGGGAATTTAACTCCGTATG
1 CTTAGACTGGGAATTGAACTCCGTATG
18307527 CTTAGACTGGG-A-TGAACTCCGTATG
1 CTTAGACTGGGAATTGAACTCCGTATG
18307552 C
1 C
18307553 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 13 0.52
26 1 0.04
27 11 0.44
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (27 bp):
CTTAGACTGGGAATTGAACTCCGTATG
Found at i:18309249 original size:26 final size:26
Alignment explanation
Indices: 18309220--18309272 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18309210 CCAGTCCGCT
*
18309220 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
18309246 CTTAGACTAGGATTGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
18309272 C
1 C
18309273 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:18310136 original size:20 final size:20
Alignment explanation
Indices: 18310111--18310149 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
18310101 AGTCCGATCT
*
18310111 TAGACTGAGATTGAACTCCA
1 TAGACTGAGAATGAACTCCA
*
18310131 TAGACTGGGAATGAACTCC
1 TAGACTGAGAATGAACTCC
18310150 GTATGCCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (20 bp):
TAGACTGAGAATGAACTCCA
Found at i:18310351 original size:12 final size:12
Alignment explanation
Indices: 18310334--18310364 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
18310324 AACGAAACGA
18310334 GCGGGCAGGCAG
1 GCGGGCAGGCAG
*
18310346 GCGGGCAGGCGG
1 GCGGGCAGGCAG
18310358 GCGGGCA
1 GCGGGCA
18310365 CTACGTCGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.26, G:0.61, T:0.00
Consensus pattern (12 bp):
GCGGGCAGGCAG
Found at i:18312086 original size:26 final size:26
Alignment explanation
Indices: 18312050--18312102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18312040 CCGGTCCGAT
*
18312050 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18312076 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18312102 C
1 C
18312103 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18312542 original size:26 final size:25
Alignment explanation
Indices: 18312512--18312587 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 25
18312502 TCAAATCTTA
18312512 AGACTGTGAATGAACTCCGTATGCTT
1 AGACTG-GAATGAACTCCGTATGCTT
18312538 AGACTGGGAATGAACTCCGTATGCTT
1 AGACT-GGAATGAACTCCGTATGCTT
*
18312564 AGACTAGGAATGAACTTCGTATGC
1 AGACT-GGAATGAACTCCGTATGC
18312588 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 46 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (25 bp):
AGACTGGAATGAACTCCGTATGCTT
Found at i:18313470 original size:26 final size:26
Alignment explanation
Indices: 18313430--18313482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18313420 CTGGTCTGAT
*
18313430 CTTAGACTGGAAATGAACTTCTTATG
1 CTTAGACTGGAAATGAACTTCGTATG
*
18313456 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
18313482 C
1 C
18313483 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:18314387 original size:25 final size:26
Alignment explanation
Indices: 18314335--18314387 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
18314325 GGTATAATCT
*
18314335 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATACC
*
18314361 TAGACTTGGAATGAACT-CGTATACC
1 TAGACTGGGAATGAACTCCGTATACC
18314386 TA
1 TA
18314388 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATACC
Found at i:18315259 original size:26 final size:26
Alignment explanation
Indices: 18315229--18315281 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18315219 CTGATCCGAT
*
18315229 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCATATG
*
18315255 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTCGGAATGAACTCCATATG
18315281 C
1 C
18315282 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCATATG
Found at i:18315766 original size:903 final size:902
Alignment explanation
Indices: 18312239--18317873 Score: 6885
Period size: 903 Copynumber: 6.3 Consensus size: 902
18312229 AAATGTGCAT
* * *
18312239 GATTTTGTGA-CATTTG-AAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAG-GAA-
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
18312300 CTGCAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTTTGA-GTTTGATGAGGGATAGGGGG
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGG
* *
18312363 CCAATATAAGGG-CAA-TACCAGCACCAATCACACATCACGTGCGCACACCCCCCCGGCCCCCCC
130 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCCCCC
*
18312426 GATCGTTGGAA-CCCAATG--GC-GGTCAGCGTTCT-CGAC---G-T-------TGGTG-CCC--
194 GATCGTCGGAACCCCAATGCCGCAGGTCAG-GTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * * * * ***
18312472 C-AAG---CATGT-GCTACC-GCA-A-CCCTCG-GTCCGTCA-AATCTTAAGACTG-TG-AATGA
258 CGAAGAAAAATGTGGC-ACCAGCACATGCC-CGAG-CC--CAGCAT-GT--G-CTGCCGCAACCC
* * *
18312525 AC--TCC-GTATG--CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTA
314 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTA
* * * * * *
18312585 TGCCTAAGTCAACCCCCGAAACGAGCGTGCGGGCGCTCAACCGGCAGAGGGGCGGGCTGCACAAG
379 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCAGAGGGGCGGGATACGCAAG
* * * * * *
18312650 CCGGGGATCGATCGGGTCCCCCTCTGCGTGTTGCCGAT-CTGCTTGCTGTAA-CCTTGATCCGGT
444 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGC-TACCGTAACCCTCGATCCGGT
* * ** *
18312713 TTGATCTTAGACTTGGAATGAACTCTATATGCCTAAG-CAACCGACGAAACG-A---GTGGACGG
508 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGG
* * * *
18312773 GCGGGCGGGCACTACGCCGGCCAGGGAGACGGGATGCGCAAGCCGTGTATCAATAGGGTGGTAGG
573 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
**
18312838 TGGGTTTAGGCACATCTTCATTATTTCTGCATGCC-ATGTAATTTTTATGGCTTGTAAATTCATA
638 TGGGTTTAGGCACATCTTCA-TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
18312902 CAATGGT-CCTTAAGCC-TCACGAGAGAGTTTCATGGCAAGA-AACTCGTTCTT-TATTTTTCAC
702 CAATGGTCCCTTAAGCCTTCACGTGA-AGTTTCATGGCAAGACGACTCGTT-TTCTATTTTTCAC
* * * * *
18312963 GATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGAAAGAATTTTTTGCCCCA
765 GATTTTTGAAACTTTTTACGATTCGGA-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
18313027 AACTTGGTAGACGTGACCCCTGTATTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
829 AACTTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
18313092 AAGTGTACAA
893 AAGTGTACAA
* * **
18313102 GATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCACACACTTTAATAACTACTGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
18313167 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGTGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
18313232 CAATATAAGGGTCAAGTACCAGCACCCATCGCACATCGTGTGCGCACACCCCCCGACCCCCCCGA
131 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGA
** * * * ** * * *
18313297 TCACCGGAGCACCAATGTCGTTGATCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGA
196 TCGTCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * * * * * *
18313362 AGAAAAATGCGGCACCAACAGATGCCCGAGCCTAGCATGTGCGGCCGTAACCCTCGGTCTGGTCT
261 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
* * * *
18313427 GATCTTAGACTGGAAATGAACTTCTTATGCTTAGACTGGGAATGAACTTCGTATGCCTAATTCAA
326 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
* * ** * *
18313492 -CCACGAAACAAGCATAAGGGCGCTCAGCCGACCAGAGGGGCGGGATACGTAAGCCGGGAATCGA
391 CCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCAGAGGGGCGGGATACGCAAGCCGGGGATCGA
* * * * * * **
18313556 TCGGGTCCCTCTCTGCGTGCTGTCGATCCTGCTACCATAACCCTTGGTCCAGTCCAATCTTAGAC
455 CCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCGGTCTGATCTTAGAC
* * ** *
18313621 TGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGTGGGCGAGCGGGCAC
520 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGGCGGGCAC
* * *
18313686 TACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTTGTAGGTGGGTTTAGGCA
585 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * *
18313751 CATCTTCATATTTTTGCCTGCCAATGCCATTTTTATGG-TTGGAAATTCATACAATTGTCCCTTA
650 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * *
18313815 ATCCTTCACCTGAAGTTTCACGGCAAGACGACTCTTTTTCTATTTTTCACCATTTTTGAAACTTT
715 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* *
18313880 TTACGATTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
780 TTACGATTC-GGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
*
18313945 ATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAA
844 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * * * * *
18314004 GATTTTATGACCATTTGAAAAAAGCGTCCCCATTTTAGACGCTTTAATTGCCACTGGCAGCACAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
18314069 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
18314134 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT-CTGCACACCCCCCGGCCGCCCCC
131 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC-GCACACCCCCCGGCC-CCCCC
** * * *
18314198 GATCGTCGGAATTCCAATGCCACCGGTCAGGTTCTCCGGA-GATGCTCTGGA-GATGGTGCCCCG
194 GATCGTCGGAACCCCAATGCCGCAGGTCAGGTTCTCC-GACGATGCTC-CGACGATGGTGCCCCG
* * * *
18314261 ACGAAGAAAAATGTGGCACCAGCACGTGCTCGAGCCCAGCATGTGCTGCCCCAACCCTTGGTCCG
257 ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * * * *
18314326 GTATAATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTTGGAATGAAC-TCGTATACCTAAG
322 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAG
* **
18314390 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGCCCAGAGGGGCGGGATACGCAAATCGGGGA
387 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCAGAGGGGCGGGATACGCAAGCCGGGGA
* * * * * * * * * *
18314455 TCGGCCAGG-ACCCCTCTACGTACTGTTGATTCTACTGCCGTAACCCTCGGTCCGGTCTGATCTT
451 TCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCGGTCTGATCTT
* * * *
18314519 AGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACG-AA--AA-GAG-TGACGGGTGGGCGG
516 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGGCGG
* **
18314579 GCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTACGTTTA
581 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
18314644 GGCACATCTTCATATTTCTACATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCC
646 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
18314709 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACCCATTTTCTATTTTTCACAATTTTTGAAA
711 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * * * *
18314774 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAATTTTAGCCCTAAACTAGGTAGAC
776 CTTTTTACGATTCGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
18314839 ATGATCCTTGTATTTTTGTTGGCATGTACAAAAAAGTTCAGCTAAAAACTCGAAGTGTACAA
841 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
18314901 GATTTTGGGACCATTTTAAAAAATTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA-CGAAA
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AAA
* *
18314965 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
65 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** * * * *
18315030 ATATTATACA-GGCCAAGTACCAGTACCCATCGCACATCATGTGCGCATACCCCCCCGG-CCCCC
130 CCAATATA-AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCCCC
* *
18315093 CGATCGCCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
193 CGATCGTCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * * * * ** * *
18315158 CGAAGAAAAATGTGACACCAGCCCATGCCCGAGCCCAGTAAGTGCTACCGCAACCCTCGAACTGA
258 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * *
18315223 TCCGATCTTAGACTCGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGT
323 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
* ** * * * * *
18315288 CAACCCATGAAACGAGCGTGCGTTCGGTCAGCCAGCCAGAAGGGTGGGATGCGTAAGCCGGGGAT
388 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCGGGATACGCAAGCCGGGGAT
* * * * * * **
18315353 CGATCGGGTCCCCCTCTGTGTGCT-ACTGGTCCTGCTATCATAACCCTCGATTTGGTCTGATCTT
452 CGACCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTACCGTAACCCTCGATCCGGTCTGATCTT
* * * * *
18315417 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAATGAACGGGCCGACGAGCGGGCGG
516 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGGCGG
* * *
18315482 GCATTACG-CAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGATT
581 GCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
18315546 AGGTACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTC
645 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
18315611 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAA
710 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
*
18315676 ACTTTTTACTATTCGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
775 ACTTTTTACGATTCGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
18315741 CATGATCCTTGTATTTTTTTTGGCATGCTA-AAAAAAATTCAGCTAAAAA-TCGAAGTGTACAA
840 CATGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
18315803 GATTTTGTGACCATTTGAAAAAAAGT-T-GCCATTTCAGACATTTTAATGGCTACTTGCAGCAAA
1 GATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
18315866 CCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
65 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
18315931 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCC
130 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC-CGGCCCCCCC
* * ** ** * * **
18315996 GATCGTCGGAACCCCAATGCTGCAGGTCAGGTTCTTCGGTGACACTCCGATGATGGTGCCTCGGT
194 GATCGTCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * **
18316061 GAAGAAAAATGTGGCACCAGAACATGCCTGAGCCCAGCATGTGCTGCCATAACCCTCGGTCCGGT
259 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* *
18316126 CTGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC-TCGTATGCCTAAGTC
324 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
** * * * * *
18316190 AAAGCACGAAACGAGCGTGCAGGCGCTCAACCGGCTAGA-----GGGATGCGTAAGCCGGGGATC
389 AACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCGGGATACGCAAGCCGGGGATC
* * * ** * * * * * * *
18316250 GACCGAGTACCCCTCTGCATGCTGTCGATCCTATTGCTGTAACCCTTGATTCGATCCGATCTTTG
453 GACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCGGTCTGATCTTAG
* * * * * *
18316315 ACTGGGAATGAACTCCGTATGGCTAAGCCAACTGACGAAATGAGCGGGCTGGACGGGCAGGTGGG
518 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGC-GGACGGGCGGGCGGG
* * * * * * *
18316380 CACTACATCGGCCAAAGAAATGGGATGCGTAAGCCGTGGATCGATAGAGTGGTAGGTGCGTTTAG
582 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** * *
18316445 GCACATCTTCATATTTCTGTGTGCCAATGCCTTTTTTATGGCTTGTAAATTCATATAATGGTCCC
647 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
** *
18316510 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCACGATTTTAGAAAC
712 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
18316575 TTTTTAC-AGTTTGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGAC
777 TTTTTACGA-TTCGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
18316639 GTGATCCTTGTCTTTTTGTTGGCATGCACACAAAAATTCAGCTAAAAACTCGAAGTGTACAA
841 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
18316701 GATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGTAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
18316766 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
18316831 CAATATAAAGGCCAAGCACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGCCCCCCCGA
131 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * *
18316896 TCATCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGACG
196 TCGTCGGAACCCCAATGCCG-CAGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* * * * * *
18316960 AAGAAAAATGCGGCACCAGCACATGCCCTAGCCCAGTATGTGCTGTCGCAACCATCTGTCCGGTC
260 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * *
18317025 TAATCTTAGACTGGGAATGAACTCTGTATGCTTACACTAGGAATGAACTTCGTATGCCTAAGTCA
325 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
* * * *
18317090 ACCCACGAAACGAGTGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATACGCAAGCTGGGGATCG
390 ACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGCCAGAGGGGCGGGATACGCAAGCCGGGGATCG
* * * * * * * * * *
18317155 GCCGGGTCCACCTCTACATGCTGTCAATCCTTCTACCGCAACCTTC-AGTCCAGTCTGATGTTAG
454 ACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGA-TCCGGTCTGATCTTAG
* * * * *
18317219 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGGAGCGGACGGGCGGGCTGGCGGGC
518 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGGCGGGC
* * *
18317284 ACTACGCCAGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
583 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
18317349 TACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCTCT
648 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * ** *
18317414 TAA-ACTATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAA
713 TAAGCCT-TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * * *
18317478 TTTTTGCGGTTCGGGAGTTTTTAAAATTTTTTTGGAAGGAGTTTTGTCCCCAAACTTAGTAGACA
777 TTTTTACGATTCGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
** * *
18317543 TGATCCTTGTATTTTTGTTGGCATGTGCAAAAAAATTCAGCAAAAAACTCAAAGTGTACAA
842 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
** * *
18317604 GATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTTAGACACTTTAATGACTACTGGCAGCAAAC
1 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
18317669 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
** * *
18317734 CAATATAAGGGCCAAGTACCAGCACAAATCACACATCATCTGCGCACACCCCCCTGGCCCCCCAG
131 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-GGCCCCCCCG
* * * * * *
18317799 ATCGTCGGAACGCCAATGCCGCCGGACAGGTTCTCTGACGATGTTCCGACGATGGTG-CCCTAGC
195 ATCGTCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-C
18317863 GAAGAAAAATG
259 GAAGAAAAATG
18317874 CTCGATCGGC
Statistics
Matches: 4090, Mismatches: 573, Indels: 177
0.85 0.12 0.04
Matches are distributed among these distances:
863 10 0.00
864 6 0.00
865 36 0.01
866 2 0.00
867 26 0.01
868 43 0.01
869 24 0.01
870 34 0.01
872 6 0.00
873 8 0.00
876 1 0.00
877 1 0.00
884 5 0.00
885 3 0.00
887 1 0.00
888 5 0.00
889 2 0.00
890 3 0.00
891 8 0.00
892 8 0.00
893 9 0.00
894 27 0.01
895 116 0.03
896 311 0.08
897 743 0.18
898 368 0.09
899 195 0.05
900 37 0.01
901 304 0.07
902 548 0.13
903 1018 0.25
904 182 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGA
TCGTCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGAC
CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCGGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGACGGGCGGGCGGGCACT
ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TACGATTCGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
Found at i:18317067 original size:26 final size:26
Alignment explanation
Indices: 18317029--18317081 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18317019 CCGGTCTAAT
* *
18317029 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTACACTAGGAATGAACTTC-GTATG
18317055 CTTACACTAGGAATGAACTTCGTATG
1 CTTACACTAGGAATGAACTTCGTATG
18317081 C
1 C
18317082 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTTCGTATG
Found at i:18318727 original size:26 final size:26
Alignment explanation
Indices: 18318691--18318743 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18318681 CCGGTCCGAT
*
18318691 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18318717 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18318743 C
1 C
18318744 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18320018 original size:902 final size:899
Alignment explanation
Indices: 18317880--18329463 Score: 14699
Period size: 902 Copynumber: 12.9 Consensus size: 899
18317870 AATGCTCGAT
* * * *
18317880 CGGCCAGAGGGGCAGGATGCGCAAGCCGTGGATTGGTCGGGTCCCCCTCTGCGTGCTGTCAATCC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
18317945 TG-TGCCGCAGCCCT-AGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATCCCTAAGCCA
66 TGCTACCGCAACCCTCA-GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * **
18318008 ACCGACGAAACGAGCGGGCGGGCGAACGGGCGGGCACTATGTCAACCAGAGAGACGGGATGCGCA
130 ACCGACGAAACGAGCGGGC-GG-G--CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
18318073 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATATCT-ACGTGCCAATGC
191 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTC-TGCCAATGC
* *
18318137 TATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
255 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18318202 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
320 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
18318267 TT-GGAAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAA
385 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
18318331 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCTATT
450 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
18318396 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTATG
515 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
18318461 AGTTGTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACAC
580 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * *
18318526 ATCATCTGCGCACACCCCCCCAACGCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
645 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * * * * *
18318591 CCGGTGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGTGGCATCAGGACATGTCCGAGGCC
709 CCGGCGATGCTTCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
** * ** * *
18318656 AGCATGTGCTACCGTAAAGCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTA
774 AGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
18318721 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGCGCGCTCAGC
839 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18318782 CAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATACTGTCGA-CC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
18318846 TTGCTGCCGCAACCCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCA
66 -TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18318911 ACCGATGAAACGA----GCGGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCC
130 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
18318972 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTG-CATTCCAATGCCATT
195 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTC-TGCCAATGCCATT
*
18319036 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCCTGGCAAGACGA
259 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
18319101 CTCGTTTTCTATTTTTCATGATTTTTGAACCTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
324 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
18319166 AAAGGATTTTTTGTCCCAAACCTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
389 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
18319231 GTTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTT-TAAAAAGTGTCCCCATTTAAG
454 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18319295 ATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
519 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
18319360 CTCGAGGTTTGATGAGTGA-AAGAGGCCAATATAAGGGCCAAGTACCAGCAGCAATCGCACATCA
584 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
18319424 TGTGTGCACACCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
649 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
* **
18319489 GATGCTTCGACGATGGTGCCCCGAGGAAGAAAAATGCAGCACCAGCACATGCCCGAAACCAGCAT
714 GATGCTTCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
18319554 GTGCTGTCGCAACCATCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTA
779 GTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
*
18319619 GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
844 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
18319675 CGACCAGAATGAGCGGGATGCGCAAGCCGGGGATTGGTCGGGTCCCGCTCTGCATGCTGCCAATC
1 CGGCCAG-AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATC
* * ** * * *
18319740 CTTCTACCGTAACCCGT-AGTCCAATTTGATGTTAGACTGGGGATGAACTCCGTATGCCTAAGCC
65 CTGCTACCGCAACCC-TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18319804 AACCGAAGAAACGAGCGGGCGGGCCTACGGACGGGCACTACGCCGGTCAGAGAGACAGGATGCGC
129 AACCGACGAAACGAGCGGGCGGG----CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* **
18319869 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGAGCCAATGC
190 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCTGCCAATGC
* * * *
18319934 CATTGTTATGGCTTGTAAATTCATGCAATGGTCTCTTAAGCCATCACGTGAAGTTTCATGGCAAG
255 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18319999 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCGAGATTTTTTAAAATTTT
320 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* ** * *
18320064 TTC-AGAAGGAGTTTTAGCCCCAAACTTTTTAGACGTGATCCTTGTATTTTT-TGTGGCTTACAC
385 TTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCAC
* * * *
18320127 AAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGT-CCTA
448 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
18320191 TTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGT
513 -TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
18320256 GTGAGTTCTCGAGGTTTGCTGAGGGATAAGGGGCCAATATAAGGGCCAACTACCAGCACTCATCG
577 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
18320321 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG-CTGGAACCCCCATACCGTAGGTTAGG
642 CACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGG
* *
18320385 TTCT-C--C-A-------ACGACGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
705 TTCTCCGGCGATGCTTCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCACATGCCCGA
* *
18320439 GCCCAGCATGTGCTGCCACAACACTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATG
770 GCCCAGCATGTGCTGTCGCAAC-C-C--T-CG----G-TC-----C---G---G---TCCG-AT-
*
18320504 CTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
809 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
18320569 ACGAAACGAGCGTGCGGGCGCTCAGC
874 ACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** * * *
18320595 CAGCCAGACGGGCAGGATGCGTAAGCCAGGGATCGATCGGGTCTGCCTCTACGTGCTGCCAATCC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * *
18320660 TACTGTCGCAACCCTCTGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
66 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18320725 CCGACGAAACAAGCGGGCGGGCGGGTGGGCACTACGCCGGCTAGAGAGACAGGATGCGCAAGCCG
131 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
18320790 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCTGCCAATGCCATTTT
196 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCTGCCAATGCCATTTT
* * * *
18320855 TATGGCCTGTAAATTCTTACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACT
261 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * **
18320920 C-ATTT-T-TTTTTAATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTCAC-AG
326 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-
* * *
18320981 AAGGAGTTTTGACCCCAAACTTGGCAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
390 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
18321046 TTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTTCAG
455 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAG
* * *
18321110 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTTTTTAAGGGCGTGTGAGTT
519 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
18321175 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCGCTCATTGCACATCA
584 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
18321240 TGTGCGCACACCCCCCAGCCCCCCCGATCG-CTAGAACCCCAATACCGCCGGTCAGG-T-T----
649 TGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * *
18321298 C--T-C-T-GACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAACA
713 CGATGCTTCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
18321358 TGAGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACT
778 TGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
*
18321423 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
843 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * * *
18321480 CGGCCAGAGGGGCGGGATGTGCAAGCCAGGGATCGACCGGGTTCGCCTCTACGTGCGGCCGATCC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
*
18321545 TGCTACCGCAACCCTCTA-TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
66 TGCTACCGCAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18321609 ATCGACGAAACAAGCGGACGGGCGGGCGGGCACTACGCCAGCCAAAGAGACGGGATGCGCAAGCA
130 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
18321674 GTGGATCGATAGGGTGGTAGATGGGTTTGGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
195 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCTGCCAATGCCATTT
* * ** * * *
18321739 TTATGGCCTGTAAATTCTTACAATGGTCTTTTAAGCCTTCGCGTGAAGTTTCAAGGCAAGACAAC
260 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
18321804 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTT-AAATTTTCTC-A
325 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
* * * *
18321867 GAAGGGGTTTTGGCCCCAAACTTGGCAGACGTGATCTTTGTATTTTTTTTGGCATGCACAAAAAA
390 -AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
18321932 ATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
454 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
18321997 ACACTTTAATGGGTACTTGCAGTAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTT
519 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18322062 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCA
584 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * * * *
18322127 TGTGCGCATA-CCCCTAG--CCCCCGATCGTCAGAACCCCAATGTCATCGGTCAGGTTCTCCGAC
649 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
* * * * *
18322189 GATGCTCCGAAGATGGTGCCCCGACGG-AGAAAAATGCGGCACCAGTAAATGCCTGAGCCCAGCA
714 GATGCTTCGACGATGGTGCCCCGA-GGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
18322253 TGTGGTGCCACAA-CC-C--T-C-G---G-TC-----C----AAT---CT--G-AT-CTTAGACT
778 TGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* *
18322292 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAAC
843 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
18322349 CAGCCAAAGGGGCGGGATGCACAAGCCGGGGAACGGCCGAGTCCCCCTCTACGTGCTGTCGATCC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * * *
18322414 TACCATCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAA
66 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
18322479 CCGATGAAATGAGCAGGCGGGCGGGTGAGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCA
131 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
18322544 TGGATCGATA-GGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCCATTT
196 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTC-TGCCAATGCCATTT
*
18322607 TTATGGCTTGTAAATTCATACAATGGTCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
260 TTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
18322672 CTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
324 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
*** * * *
18322736 AAAGGAGTTTTGGGAACAAACTTGGTAGACATGATCGTTGTATTTTTTCTTGGCATGCACAAAAA
389 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAA
* *
18322801 CATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
453 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
18322866 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
518 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18322931 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATCGCACATC
583 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
18322996 ATGCGCGCACACCCCCCCCGG-CCACTCGATCGTCAGAACCCCAATGCCGTCGATCAGGTTCTCC
648 ATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * ** * * * *
18323060 GACGTTGCTCCGGTGATGGTGCCCCGACGG-ATAAAAATACGGCACCAGCATATGCCAGAGCCCA
711 GGCGATGCTTCGACGATGGTGCCCCGA-GGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * ** * *
18323124 GCATGTGCTGT--CAACTCTCGTTCCTATCTGATCTTACACTGGGAATGAACTCCGTATGCTTAG
775 GCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
18323187 ACAGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTCAGC
840 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18323247 CGGCCAGAGGGGCGGGAT-CACAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTATCGATCC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * * * *
18323311 TGCGGCCGCAACCCTCAGTCCGGTCTAATCTTAGACAGGGAATGAACTCCATATGCATAAGCCAA
66 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
18323376 CCGACGGAACTAGCAGGCGGGCGGGCGAGCTGGCGTGCACTACGCCGGCCAGAGAGACGGGATGC
131 CCGACGAAAC--G-A-GCGGGCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
*
18323441 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCCAA
188 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTC-TGCCAA
*
18323505 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGC
252 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
** *
18323570 AAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAAT
317 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* *
18323635 TTTTTCGAAAGGTA-TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGCCATGC
382 TTTTTCGAAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
18323699 ACAAAACAATTCAGCTAAAAACTCGAAGTGTATAATATTTTGTGACCATTTGAAAAAAGTGTCCC
446 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * * *
18323764 CATTTCAGACACTTTAATGGCAACTGGCAGTAAACCTATTAAATCTCAAATGCTCTTTAAGAGGG
511 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * **
18323829 TGTGACTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATATAAGTTCCAAGTACCAGCACCCATC
576 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
18323894 GCACACCATATGCACACACCCCCCCGG-GCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
641 GCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
** * * * * *
18323958 TTCTTTGGCAATGCTCCGACGATGGTGCCCCGAGGAAGAAAAATGCGACACCAACACATGCCCAA
705 TTCTCCGGCGATGCTTCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCACATGCCCGA
*
18324023 GCCCAGCATGTGCTGTCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
770 GCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18324088 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGTGTGCGGGCGCTCAGC
835 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** ** *
18324153 CGGCCAGAGGGGCGGGATGAGCAAGCCAGGGATCGATCGGGTCTGCCTCTATGTGCTGTCAATCC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
18324218 GGCTACCGTAACCCTCTGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
66 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
18324283 CCGACGAAACGAGCGAGCGGGCAGGCGGACACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCG
131 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
18324348 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTCTGTGTGCCAATGCCATTTT
196 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCTGCCAATGCCATTTT
* * * * * *
18324413 TATGGCCTGTAAATTCTTACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCAAGGCAATACGACA
261 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
18324478 CGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTACGGCTT-GGGATTTTTTTAAATTTTTTCGG
326 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG-TTCGGGATTTTTTAAAATTTTTTCGA
* * * *
18324541 AAGGAGTTTTGGCCCCAAACTTGGTAAACATGATCCTTTTATTTTTGTTGGCATGCATAAAAAAA
390 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
18324606 TTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGA
455 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18324671 CACTTTAATGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTC
520 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
18324736 TCGAGGTTTGATGAAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCAGCCATCGCATATCA
585 TCGAGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** *
18324801 TGTGCGCACACCCCCCACCCCCAACCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
649 TGTGCGCACA--CCCC-CCGGC--CCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * *
18324866 TCCGGCGATGCTCCGGCGATGGTGCCCCG-GTGAAGAAAAATGCGGCACCAGCACATGCCTGAGC
708 TCCGGCGATGCTTCGACGATGGTGCCCCGAG-GAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
18324930 CCAGCTTGTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCATATGCT
772 CCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
18324995 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATC-AAACGAACGTGCGGGCGCTTAGC
837 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGC
* * * *
18325058 CGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGG-CTGGTTCCCCCTCTACGTGCTGTCGATC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGTCGATC
* * * *
18325122 CTGCTACCGTAACCCTCAGTTCGGTCCGATCTTAGACTGGGTATGAACTCCGTATGCCTAAGCCA
65 CTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18325187 ACTGACGAAACGAGTGTGCGGGTGGACGGGCGGGTACAACGCCTGCCAGAGAGACGGGATGCGCA
130 ACCGACGAAACGA----GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
18325252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTCTAGGCACACCTTCTTATTTCTG-CATGCCAATGG
191 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTC-TGCCAATGC
* *
18325316 CATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
255 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * * *
18325381 ACGAC-CTATTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTGGGGATTTTTTAAAACTT
320 ACGACTC-GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * *
18325445 TTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACA
384 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
18325510 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCAT
449 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
18325575 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
514 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
18325640 GAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACGCATCGCA
579 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
18325705 CATCATGTGCACACACCCCCCGG-CCCCCCGATCGTCGAAACCCCAATGCCGCCGGTTAGGTTCT
644 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * ** ** * *
18325769 ACGGTGATGC-TCTGGTGATGGTGCCATGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
709 CCGGCGATGCTTC-GACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* ** * * *
18325833 CAGCATGTGCTGCCGCAACCCTCGGTCTAGTACAATCTTAGACTGGCAATGAACTCCGTATGCTT
773 CAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
18325898 AGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CAACGAAACGAGCGTGCAGGTGCTCAGC
838 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * **
18325959 TGGCCAGAAGGGCGGGATGCGCCAGCCAGGGATCAATCGGGT-CCCCTCTACGTGCTACCGATCC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * ** * * *
18326023 TGCTACCGTAACCCTTGGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTACGGCTAAGCCAA
66 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
18326088 CCGATGAAACGAGCGGGTGGGCGGGTGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
131 CCGACGAAACGAGC----GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
18326153 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATTCCT
192 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCTGCCAATGCCA
* * *
18326218 TTTTTATGGCTTGTAAAGTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGAC
257 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
18326283 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTCCGGTTCGGGATTTTTTAAAATTTTTT
322 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** * * *
18326348 CGGAAA-GAGTTTTGGCCCCAAACTTATTAGACGAGATCCTTGTATTTTTTTTGGCATCCA-AAA
387 C-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18326411 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCTCATTT
451 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
18326476 AAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGA
516 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
18326541 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
581 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
18326606 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTAC
646 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * *
18326671 GGCGATGC-TCCAGCGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGTGCCTA
711 GGCGATGCTTCGA-CGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
18326735 GCATGTGCTGCCACAACCTTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAG
775 GCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
18326800 ACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTTAGC
840 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * * *
18326860 CGGGTAAAGGGGCGCGATGTC-CAAGTCGAGGATCAGTCGGGTCCCTCTCTGCGTGCTGTCAATC
1 CGGCCAGAGGGGCGGGATG-CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATC
* *** * * * *
18326924 CTACTGTTAG-AACCCTCCGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG-C
65 CTGCT-ACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18326987 AACCGACGAAATGA----GCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
129 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * * *
18327048 CATGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTCTGCCTACCAAAGCCATT
194 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCTGCCAATGCCATT
* *
18327113 TTTATGGCGTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
259 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * * *
18327178 CTCGTTCTCTATTTTTCACGATTTTCGAAACGTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTG
324 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
18327243 GAAGGATTTTTGG-CCCAAACTTGATAGACATGATCCTTGTATTTTTTTTAGGCATGCACAAAAA
389 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAA
18327307 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
453 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
18327372 GACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGC
518 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* **
18327437 TCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGTGAAGTACCAGCACCCATCGCACATC
583 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
18327502 AAGTGTGCACAGCCCCCCCAGCCCCCCTGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCT--
648 ATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
18327565 --CTA-G---C-A--ATGGTGCCCC-AGCGAAGAAAAATGCAGCACCAGCACTTGCCCGAGGCCA
711 GGCGATGCTTCGACGATGGTGCCCCGAG-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
18327620 GCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAAAGAACTTCGTATGCTTAG
775 GCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
18327685 ACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCACGTAACGAGTGTGCGGTCGCTCAGC
840 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * **
18327745 TAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGATACCGATCC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
18327810 TGCTACTGCAACCCTCGGTCCAGTC---TC--AG--T----ATG-----CGTAAGCC-AA-CCAA
66 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
18327857 -CGAAACG-AGCGATCGGGCGGGCGGACGGGCACTATGTCGGCCAGAGAGATGGGATGCGCAAGC
131 CCG--ACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
18327920 CGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGCCA-
194 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTC-TGCCAATGCCAT
* *
18327983 TTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
258 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** *
18328048 ACTCGTTTTCTATTTCTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT-
323 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
18328112 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGAACAAAGA
388 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
18328177 AATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGAT-ACCATTTGAAAAAAATGTCCCCATTTC
453 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG-TGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
18328241 AGACACTTTAATGGCTACTGGCAGCAAACTTGTAAGATCTCAAATGCTCTTTCAGGGGGTGAGGG
517 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
18328306 TTCTCGAGGTTTGATGAGGGATAAGAGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACAT
582 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18328371 CATGTGCGCACACTCCCCCGACCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCC
647 CATGTGCGCACAC-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * **
18328436 GGTGATGGTTCGACGATGGTGCTCCG-GTGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCA
711 GGCGATGCTTCGACGATGGTGCCCCGAG-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * **
18328500 GCATGTGCTTTCGCAACCCTCGGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
775 GCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
**
18328565 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCAGC
840 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
18328625 CGGCCAGAGGGGCTGGATACGCAAGCCGAGGATCGACCGAGTCCCCCTCTACATGCTG-CTGATC
1 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-GATC
* * * * * * *
18328689 TTGCTGCTGCAACTCTCAGTCTGGT-TCAATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCC
65 CTGCTACCGCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
18328753 AACCGACGAAACGAGTGGGCGGGAGGGCAGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCAC
129 AACCGACGAAACGA----GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
18328818 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATG
190 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTC-TGCCAATG
* * *
18328882 CCATTTTTATGGCTTGTAAACTCATAGAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAA
254 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
18328947 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTGAAAATTT
319 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * * *
18329012 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTGGTTGGTATGCATA
384 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
18329077 AAACAATTCAGCTAAAAACTCTAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
449 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18329142 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGT
514 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
18329207 GAGTTATCGAGGTATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
579 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
18329272 CATCATGTGCGCACACCCCCCGGCCCCCCTGATCGCCGAAACCCCAATGCCATCGGTCAGGTTCT
644 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * *
18329337 CCGGCGATGCTTC-AGCGATGGTGCCCTGATGAAGAGAATTGTGACACCAGCACATGCCCGAGCC
709 CCGGCGATGCTTCGA-CGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
18329401 CAGCATGTTCT-ACTGTAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
773 CAGCATGTGCTGTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
18329464 CTAAGCGAAC
Statistics
Matches: 9374, Mismatches: 1080, Indels: 455
0.86 0.10 0.04
Matches are distributed among these distances:
867 2 0.00
868 99 0.01
869 394 0.04
870 430 0.05
871 153 0.02
872 98 0.01
873 9 0.00
874 107 0.01
876 4 0.00
877 2 0.00
878 2 0.00
879 1 0.00
880 226 0.02
881 1 0.00
882 4 0.00
883 2 0.00
884 33 0.00
885 600 0.06
886 13 0.00
887 265 0.03
888 46 0.00
889 2 0.00
890 3 0.00
891 7 0.00
892 38 0.00
893 451 0.05
894 420 0.04
895 376 0.04
896 155 0.02
897 110 0.01
898 307 0.03
899 454 0.05
900 540 0.06
901 144 0.02
902 713 0.08
903 444 0.05
904 411 0.04
905 686 0.07
906 264 0.03
907 106 0.01
908 2 0.00
909 243 0.03
910 224 0.02
911 103 0.01
912 298 0.03
913 2 0.00
914 3 0.00
915 161 0.02
918 5 0.00
919 119 0.01
920 92 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
TGCTTCGACGATGGTGCCCCGAGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
Found at i:18320507 original size:26 final size:26
Alignment explanation
Indices: 18320478--18320556 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
18320468 CCGATCTGAT
*
18320478 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18320504 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18320530 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18320556 C
1 C
18320557 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18321425 original size:26 final size:26
Alignment explanation
Indices: 18321389--18321441 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18321379 CCGGTCCGAT
*
18321389 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18321415 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18321441 C
1 C
18321442 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18324091 original size:26 final size:26
Alignment explanation
Indices: 18324062--18324114 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18324052 TCGGTCCGAT
18324062 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18324088 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18324114 C
1 C
18324115 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18325003 original size:26 final size:26
Alignment explanation
Indices: 18324967--18325019 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18324957 CTGGTCTGAT
*
18324967 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18324993 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
18325019 C
1 C
18325020 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18325170 original size:905 final size:901
Alignment explanation
Indices: 18322284--18329463 Score: 9346
Period size: 905 Copynumber: 8.0 Consensus size: 901
18322274 CCAATCTGAT
* *
18322284 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
18322349 CAGCCAAAGGGGCGGGATGCACAAGCCGGGGAACGGC-CGAGTCCCCCTCTACGTGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTACGTGCTGTCGATC
* * * * * * *
18322413 CTACCATCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCA
131 CTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
18322478 ACCGATGAAATGAGC-AGGCGGGC-GG-GTGAGCACTACGCCGGCCAGAGAGACGGGATGCACAA
196 ACCGACGAAACGAGCGA-GCGGGCAGGCG-GA-CACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
18322540 GCCATGGATCGATA-GGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
18322604 TTTTTATGGCTTGTAAATTCATACAATGGTCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 TTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
18322669 TGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTGCGGTTCGAGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *** * *
18322733 TCGAAAGGAGTTTTGGGAACAAACTTGGTAGACATGATCGTTGTATTTTTTCTTGGCATGCACAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACAA
* *
18322798 AAACATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
18322863 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
18322928 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * * *
18322993 ATCATGCGCGCACACCCCCCCCGGCCACTCGATCGTCAGAACCCCAATGCCGTCGATCAGGTTCT
711 ATCATGTGCGCACACCCCCCCCCCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * * * *
18323058 CCGACGTTGCTCCGGTGATGGTGCCCCGACGGATAAAAATACGGCACCAGCATATGCCAGAGCCC
776 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
18323123 AGCATGTGCTGT--CAACTCTCGTTCCT-ATCTGATCTTACACTGGGAATGAACTCCGTATG
841 AGCATGTGCTGTCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18323182 CTTAGACAGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** *
18323247 CGGCCAGAGGGGCGGGAT-CACAAGCCGGGGATCGGC-CGGGTCCCCCTCTGTGTGCTATCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTACGTGCTGTCGATC
** * ** * * *
18323310 CTGCGGCCGCAACCCTCAGTCCGGTCTAATCTTAGACAGGGAATGAACTCCATATGCATAAGCCA
131 CTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
18323375 ACCGACGGAACTAGCAGGCGGGCGGGCGAGCTGGCGTG-CACTACGCCGGCCAGAGAGACGGGAT
196 ACCGACGAAAC--G-A-GCGAGCGGGC-A---GGCG-GACACTACGCCGGCCAGAGAGACGGGAT
* *
18323439 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
252 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
18323504 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGG
317 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
18323569 CAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAA
382 CAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA
* *
18323634 TTTTTTCGAAAGGTA-TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGCCATG
447 TTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
* * *
18323698 CACAAAACAATTCAGCTAAAAACTCGAAGTGTATAATATTTTGTGACCATTTGAAAAAAGTGTCC
511 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * * *
18323763 CCATTTCAGACACTTTAATGGCAACTGGCAGTAAACCTATTAAATCTCAAATGCTCTTTAAGAGG
576 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * **
18323828 GTGTGACTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATATAAGTTCCAAGTACCAGCACCCAT
641 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *** *
18323893 CGCACACCATATGCACACACCCCCCCGGGCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAG
706 CGCACATCATGTGCGCACACCCCCCCCCCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAG
** * * * * * *
18323957 GTTCTTTGGCAATGCTCCGACGATGGTGCCCCGAGGAAGAAAAATGCGACACCAACACATGCCCA
771 GTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
*
18324022 AGCCCAGCATGTGCTGTCGCAACCCTCGGT-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
836 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTA
18324086 TG
900 TG
* * *
18324088 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
18324153 CGGCCAGAGGGGCGGGATGAGCAAGCCAGGGATC-GATCGGGTCTGCCTCTATGTGCTGTCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTACGTGCTGTCGATC
* * * *
18324217 CGGCTACCGTAACCCTCTGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 CTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
18324282 ACCGACGAAACGAGCGAGCGGGCAGGCGGACACTATGCCGGCCAGAGAGACGGGATGCGCAAGCC
196 ACCGACGAAACGAGCGAGCGGGCAGGCGGACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* **
18324347 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTCTGTGTGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * * *
18324412 TTATGGCCTGTAAATTCTTACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCAAGGCAATACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** *
18324477 ACGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTACGGCTT-GGGATTTTTTTAAATTTTTTCG
391 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGG-TTCGGGATTTTTTAAAATTTTTTCG
* * *
18324540 GAAGGAGTTTTGGCCCCAAACTTGGTAAACATGATCCTTTTATTTTTGTTGGCATGCATAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
18324605 ATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18324670 ACACTTTAATGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
18324735 CTCGAGGTTTGATGAAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCAGCCATCGCATATC
650 CTCGAGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
18324800 ATGTGCGCACACCCCCCACCCCCAACCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
714 ATGTGCGCACA--CCCC-CCCCC--CCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
** *
18324865 CTCCGGCGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGC
774 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
18324930 CCAGCTTGTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCATATG
839 CCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18324993 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATC-AAACGAACGTGCGGGCGCTTAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAG
* * *
18325057 CCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGGCT-GGTTCCCCCTCTACGTGCTGTCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTACGTGCTGTCGAT
* *
18325121 CCTGCTACCGTAACCCTCAGT-TCGGTCCGATCTTAGACTGGGTATGAACTCCGTATGCCTAAGC
130 CCTGCTACCGCAACCCTCAGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * ** * *
18325185 CAACTGACGAAACGAGTGTGCGGGTGGACGGGCGGGTACAACGCCTGCCAGAGAGACGGGATGCG
194 CAACCGACGAAACGAGCGAGC--G-GG-CAGGCGGACACTACGCCGGCCAGAGAGACGGGATGCG
* * *
18325250 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTCTAGGCACACCTTCTTATTTCTGCATGCCAATG
255 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
18325315 GCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
320 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
18325380 GACGAC-CTATTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTGGGGATTTTTTAAAACT
385 GACGACTC-GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * *
18325444 TTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
449 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
* *
18325509 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
18325574 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
579 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
18325639 TGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACGCATCGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** * *
18325704 ACATCATGTGCACACA-CCCCCCGGCCCCC-CGATCGTCGAAACCCCAATGCCGCCGGTTAGGTT
709 ACATCATGTGCGCACACCCCCCCCCCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * ** *
18325767 CTACGGTGATGCTCTGGTGATGGTGCCATGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
774 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
18325832 CCAGCATGTGCTGCCGCAACCCTCGGTCTAGTAC-AATCTTAGACTGGCAATGAACTCCGTATG
839 CCAGCATGTGCTGTCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18325895 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CAACGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** **
18325959 TGGCCAGAAGGGCGGGATGCGCCAGCCAGGGATC-AATCGGGT-CCCCTCTACGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTACGTGCTGTCGATC
* ** * * * *
18326022 CTGCTACCGTAACCCTTGGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTACGGCTAAGCCA
131 CTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
18326087 ACCGATGAAACGAGCGGGTGGGCGGGTGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCA
196 ACCGACGAAACGAGC----GAGCGGGCAGGCGGACACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
18326152 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATTCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
18326217 TTTTTTATGGCTTGTAAAGTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
18326282 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTCCGGTTCGGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* ** * *
18326347 TCGGAAAGAGTTTTGGCCCCAAACTTATTAGACGA-GATCCTTGTATTTTTTTTGGCATCCA-AA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC-ATGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
18326410 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCTCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
18326475 TAAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
18326540 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** *
18326605 ATCATGTGCGCACACCCCCCGGCCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
711 ATCATGTGCGCACACCCCCCCCCCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
18326669 ACGGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGTGCCT
776 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * ** *
18326734 AGCATGTGCTGCCACAACCTTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATG
841 AGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
18326795 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * * * *
18326860 CGGGTAAAGGGGCGCGATGTC-CAAGTCGAGGATCAG-TCGGGTCCCTCTCTGCGTGCTGTCAAT
66 CGGCCAGAGGGGCGGGATG-CGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTACGTGCTGTCGAT
* *** * * * *
18326923 CCTACTGTTAG-AACCCTCCGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG-
130 CCTGCT-ACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
18326986 CAACCGACGAAATGAGC-AGGCGGG--TG-GG-CACTACGCCGGCCAGAGAGACGGGATGCGCAA
194 CAACCGACGAAACGAGCGA-GCGGGCAGGCGGACACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
18327046 GCCATGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTCTGCCTACCAAAGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
18327111 TTTTTATGGCGTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
18327176 GACTCGTTCTCTATTTTTCACGATTTTCGAAACGTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
18327241 TGGAAGGATTTTTGG-CCCAAACTTGATAGACATGATCCTTGTATTTTTTTTAGGCATGCACAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT-GGCATGCACAAA
18327305 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
18327370 CAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * **
18327435 GCTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGTGAAGTACCAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
18327500 TCAAGTGTGCACAGCCCCCCCAGCCCCCCT-GATCGTCGAAACCCCAATGCCGCCGGTCAGG-T-
712 TCATGTGCGCACA-CCCCCCC-CCCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * *
18327562 T----C--T-CT--AGCAATGGTGCCCC-AGCGAAGAAAAATGCAGCACCAGCACTTGCCCGAGG
775 TCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
18327617 CCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAAAGAACTTCGTATG
839 CCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18327680 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCACGTAACGAGTGTGCGGTCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * **
18327745 TAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC-GATCGGGTCCCCCTCTGCGTGATACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTACGTGCTGTCGATC
* * *
18327809 CTGCTACTGCAA-CC-C--TC-GGT-C---C----A----G--T---CTCAGTATGCGTAAGCCA
131 CTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
18327852 ACCAACGAAACGAGCGATCGGGCGGGCGGACGGGCACTATGTCGGCCAGAGAGATGGGATGCGCA
196 ACCGACGAAACGAGCGAGCGGGCAGGCGGA----CACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
18327917 AGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
18327982 A-TTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
18328046 CGACTCGTTTTCTATTTCTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
18328111 T-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGAACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
18328175 GAAATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGAT-ACCATTTGAAAAAAATGTCCCCATT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG-TGACCATTTGAAAAAAGTGTCCCCATT
* * * *
18328239 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAGATCTCAAATGCTCTTTCAGGGGGTGAG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
18328304 GGTTCTCGAGGTTTGATGAGGGATAAGAGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** *
18328369 ATCATGTGCGCACACTCCCCCGACCCCCC-CGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTC
711 ATCATGTGCGCACAC-CCCCCCCCCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * ** **
18328433 TCCGGTGATGGTTCGACGATGGTGCTCCGGTGAAGAAAAATGTAGCACCAGCACATGCCCGAGCC
775 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* ** *
18328498 CAGCATGTGCTTTCGCAACCCTCGGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATG
840 CAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
**
18328560 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
18328625 CGGCCAGAGGGGCTGGATACGCAAGCCGAGGATCGAC-CGAGTCCCCCTCTACATGCTG-CTGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTACGTGCTGTC-GAT
* * * * * * *
18328688 CTTGCTGCTGCAACTCTCAGTCTGGTTCAATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCC
130 CCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
18328753 AACCGACGAAACGAGTGGGCGGGAGGGCAGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCAC
195 AACCGACGAAACGA----GCGAGCGGGCAGGCGGACACTACGCCGGCCAGAGAGACGGGATGCGC
18328818 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
18328883 CATTTTTATGGCTTGTAAACTCATAGAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * * *
18328948 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTGAAAATTTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
18329013 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTGGTTGGTATGCATAA
451 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
18329078 AACAATTCAGCTAAAAACTCTAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18329143 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
18329208 AGTTATCGAGGTATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * * **
18329273 ATCATGTGCGCACACCCCCCGGCCCCCCT-GATCGCCGAAACCCCAATGCCATCGGTCAGGTTCT
711 ATCATGTGCGCACACCCCCCCCCCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * * * *
18329337 CCGGCGATGCTTCAGCGATGGTGCCCTGATGAAGAGAATTGTGACACCAGCACATGCCCGAGCCC
776 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * *
18329402 AGCATGTTCT-ACTGTAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
841 AGCATGTGCTGTC-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
18329463 C
1 C
18329464 CTAAGCGAAC
Statistics
Matches: 5504, Mismatches: 650, Indels: 251
0.86 0.10 0.04
Matches are distributed among these distances:
863 13 0.00
864 19 0.00
865 1 0.00
866 2 0.00
867 2 0.00
868 1 0.00
869 36 0.01
870 218 0.04
871 153 0.03
872 87 0.02
876 1 0.00
877 1 0.00
878 1 0.00
879 2 0.00
880 215 0.04
881 3 0.00
882 1 0.00
883 1 0.00
884 8 0.00
885 209 0.04
886 1 0.00
887 2 0.00
888 1 0.00
889 1 0.00
890 1 0.00
891 1 0.00
892 32 0.01
893 229 0.04
894 199 0.04
895 8 0.00
896 36 0.01
897 108 0.02
898 292 0.05
899 443 0.08
900 542 0.10
901 137 0.02
902 362 0.07
903 284 0.05
904 351 0.06
905 657 0.12
906 280 0.05
907 104 0.02
908 3 0.00
909 234 0.04
910 222 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTACGTGCTGTCGATC
CTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGAGCGGGCAGGCGGACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCCCCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:18325909 original size:26 final size:26
Alignment explanation
Indices: 18325869--18325921 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18325859 CTAGTACAAT
18325869 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
18325895 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
18325921 C
1 C
18325922 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:18326805 original size:26 final size:26
Alignment explanation
Indices: 18326769--18326821 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18326759 CTGGTCCAAT
18326769 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
18326795 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18326821 C
1 C
18326822 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18327692 original size:26 final size:26
Alignment explanation
Indices: 18327654--18327706 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18327644 CTGGTCCGAT
*
18327654 CTTAGACTAGGAAAGAACTTCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
* *
18327680 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
18327706 C
1 C
18327707 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:18328570 original size:26 final size:26
Alignment explanation
Indices: 18328534--18328586 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18328524 CCAGTTTGAT
18328534 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18328560 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18328586 C
1 C
18328587 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18330185 original size:26 final size:26
Alignment explanation
Indices: 18330156--18330208 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18330146 CCGGTCCGAT
* *
18330156 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18330182 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18330208 C
1 C
18330209 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18331970 original size:26 final size:25
Alignment explanation
Indices: 18331934--18331985 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
18331924 CTGGTCAGAT
18331934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAA-TCCGTATG
* *
18331960 CTTAGACTGGGAGTGAATCTGTATG
1 CTTAGACTGGGAATGAATCCGTATG
18331985 C
1 C
18331986 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAATCCGTATG
Found at i:18332860 original size:26 final size:26
Alignment explanation
Indices: 18332831--18332883 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18332821 CTGATCTGAT
* *
18332831 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18332857 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18332883 C
1 C
18332884 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18333773 original size:26 final size:26
Alignment explanation
Indices: 18333737--18333789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18333727 CTGGTCTGAT
18333737 CTTAGACTGGGAACGAACTTCGTATG
1 CTTAGACTGGGAACGAACTTCGTATG
* *
18333763 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAACGAACTTCGTATG
18333789 C
1 C
18333790 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTTCGTATG
Found at i:18334633 original size:25 final size:26
Alignment explanation
Indices: 18334599--18334650 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
18334589 CCAGTCTGAT
18334599 CTTAGACTGGGAA-GAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18334624 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18334650 C
1 C
18334651 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18335534 original size:25 final size:26
Alignment explanation
Indices: 18335500--18335551 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
18335490 CCAGTCTGAT
18335500 CTTAGACTGGGAA-GAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18335525 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18335551 C
1 C
18335552 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18336047 original size:901 final size:900
Alignment explanation
Indices: 18334050--18345493 Score: 13894
Period size: 903 Copynumber: 12.9 Consensus size: 900
18334040 GGTAGGTGGG
* * *
18334050 TTTA-GGCTTGTATATTCATACAAGGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** *
18334114 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTG
66 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
18334179 GAAGTAATTTTGGCTCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAA
131 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
18334244 ATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAG
196 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18334309 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATATGGGGGTGTGAGTT
261 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18334374 CTCGAAGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
326 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
18334439 TGTGCGCAAACCCCCTGGCTCCCTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT
391 TGTGCGCACACCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* *
18334504 GATGCTCCAGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGAAT
455 GATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
18334569 GTGCTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAA-GAACTCCGTATGCTTAGACTG
519 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
*
18334633 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAG
584 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * *
18334698 GGGTGGGATGCGCAAGCCGGGGATCAACTGGGTCCCCCTCTGTC-TGCTGCCGATCCTACTACTG
649 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTG-CGTGCTGCTGATCCTACTACCG
* * *
18334762 CAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
713 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * ** * *
18334827 TCGAGCGAGCGGGCGATCAGGCGGGCACTACGTCGGCTAGAGAGATGGGATGCACACGCCGTGGA
778 ACGAGCGGGCGGGCG-GCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
* * * *
18334892 TCGATAGGTTGGTAGGTGGGTTTAGGCACATCATCATATTTCTGCATGTCGATGCCATT
842 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
18334951 TTTATTGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
18335016 CTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
66 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
18335081 GAAGTAATTTTGGCTCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAA
131 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
18335145 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAG
196 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
18335210 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTATATGGGGGTGTGAGTT
261 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* ** * *
18335275 CTCGAGGTTTGATAAGGGATAGGCAGCGAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
326 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
18335340 TGTGCGCAAACCCCCTGGCCCTCCCGATCACCGAAACCCTAATGCCGCCGGTCAGGTTCTCCGAT
391 TGTGCGCACACCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* *
18335405 GATGCTCCAGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGAAT
455 GATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
18335470 GTGCTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAA-GAACTCCGTATGCTTAGACTG
519 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* *
18335534 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTTAGCCGGCCAGAG
584 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * ** * *
18335599 GGGCGGGATGAGTAAGTCGGGGATCAATTGGGTCCCCTTCTGTGTGCTGCTGATCCTACTACCGC
649 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCTACTACCGC
* * * * *
18335664 AACCCTCAATCCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAT
714 AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * *
18335729 CGAGCGGGCGGGCGGTCAGACGGGCACTACGTCGGCCAGAGAGACAGGAT-CACACGCCATGGAT
779 CGAGCGGGCGGGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGAT
* * * * **
18335793 CGATAGGTTGGTAGATGCGTTTAGGCATATCACCATATTTCTGCATGCCAATGCCATT
843 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
18335851 TTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
18335916 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTTG
66 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
18335981 GAAGTAATTTTGGCTCTAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
131 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
18336046 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCTATTTCAC
196 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA-
*
18336111 G-CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
260 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
18336175 TCTCGAGGTTTGATGAAGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCG--CATC
325 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* **
18336238 ATGTGCGCACACCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGCCAATCAGGTTCTCCGA
390 ATGTGCGCACACCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * ** *
18336303 CAATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCGCATGCCCGAGCCCAGCA
454 CGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* * *
18336368 TGTGCTGCCACAACCCTCGGTCCGATCTC-ATTTTAGACTGGGAATGAACTCCGTATGCTTAGAC
518 TGTGCTGCCGCAACCCTCGGTCCGGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
18336432 TGGGAATGAACTCCGTCTGCCTAAGTCAACCCATGAAACTAGCGTGCGGGAGCTCAGCCGGCCAG
582 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * *
18336497 AGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCACTCGGTGTGCT-ATCGATCCTTCTAC
647 AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCT-GATCCTACTAC
* ** * * * * *
18336561 CACAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAACCAACCGATG
711 CGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * ** * * * *
18336626 AAACGA------GTG-GGCGGGCAGGCACTACGTTGTCCAAAGAGAC-GAGTTGCGCAAGCCGTA
776 AAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACAG-GATGCGCAAGCCGTG
* * ** *
18336683 GATCGATATGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATACCATT
840 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
18336744 TTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACATGAAGTTTCATGGGAAGACGA
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
18336809 CTCGTTTTTTATGTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCG
66 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
** * *
18336874 GGGGGAGTTTTGGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAC
131 GAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
18336939 AATTCAGCTAAAAACTCGGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCTATTTCA
195 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
18337004 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGT
260 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18337069 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATC
325 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
18337134 ATGTACGCACACCCCCCAGCCCCCCTAACCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCC-A
390 ATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
** *
18337198 GCGATGCT-C-CGA--------CGA--AA-AAAAATGCAGCACC-GACACATGCCTGAGCCCAGC
454 -CGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAG-CACATGCCCGAGCCCAGC
18337249 ATGTGCTGCCGCAA----C---CC--T-CGATC-----C-------G-A-TCCG-AT-CTTAGAC
517 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
18337288 TGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCTG
582 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
** * * * * * **
18337353 AGGGGCTAGATGCGCAAGTCGGGGATCGACCGAGTCCCCCTCTACGTGCTACCGATCCGGCTACC
647 AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCTACTACC
* * *
18337418 GCAACACTCAGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGA
712 GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * * *
18337483 AATGAAC-GG-GTG-GACGGACGGGCACTATGTCGGCC----AG--A-GA---G--A--C-TGGA
777 AACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
* * * *
18337530 TCGATAGGGTGTTAGGTGGGTTTAGGAAGATCTTCATATTTCTACATGCCAATGCCATT
842 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
18337589 TTTATGGCTTGTAGATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTCTT-ATGGCAAGACG
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT-TTCATGGCAAGACG
* * * * *
18337653 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTTGAGATTTTTTAAAATTTTTTC
65 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
** * * *
18337718 AAAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
130 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAA
* **
18337783 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGATTATTTGAAAAAAGTGTCCCCATTTC
194 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * **
18337848 AAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAATGGGGTGTTTG
259 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
18337913 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATTGCACAT
324 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
18337978 CACGTGCGCACACCCCCCCGCCCCCCGATCGCCGGAACCTCAATGCCACCGATCAGGTTCTTCGG
389 CATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * * * * *
18338043 TGATGATCCGGCGATGGTGCCTC-AGTGAAGAAAAATGTGACACCAGCAGATACCCGAGCCCAGC
454 CGATGCTCC-GCGATGGTGCCCCGA-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
18338107 ATGTACTGCTGTAACCCTCGGTCCGGTCCGATCTTATACTTGGAATGAACTCCGTATGCTTAGAC
517 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
18338172 TGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGCCAGCCAG
582 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * *
18338237 AGGGGTGGGATGCACAAGCCGGGGATCGGACCGGGTCCCCCTCTACATGCT-ATGGATCCTGCTA
647 AGGGGCGGGATGCGCAAGCCGGGGATC-GACCGGGTCCCCCTCTGCGTGCTGCT-GATCCTACTA
* * * *
18338301 CCGCAACCTTCCG-CTCAGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGA
710 CCGCAACCCTCAGTC-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * ** * * *
18338365 CGAAATGAGCGGGCGGGCAGGCGGGTGGTTACTACGTCGGCCAGAGAGACAGGATGCACAAGCTG
774 CGAAACGAGCGGGCGGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCG
** *
18338430 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATCCCATT
838 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
** * * *
18338493 TTTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACATGAAGTTTAATGGCAAGACGA
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
18338558 CTCGTTTTCTATTTTTC---A----TG--A----TT----TTC----------AAAATTTTTTCG
66 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
*
18338596 GAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
131 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
18338661 ATTCAGCCAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTGAG
196 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
18338726 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAGATGCTCTTTAAGGGGCTGTGAGTT
261 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
18338791 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCA
326 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
18338856 TGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCTAATG-CGCCAGTCAGGTTCTCCGG
391 TGTGCGCACACCCCC-CGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* *** *
18338920 C-AGTGCTCTGGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAGTACATGCCCGAGCCCAGC
454 CGA-TGCTC-CGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
* * * *
18338984 ATGTGCTTCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
517 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
18339049 TGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCAG
582 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * ** ** ** * * ** ***
18339114 AGGGGTGGGATGCGGACGCCGATGATCGGTCGGGTCCCCCTCTATGTGCTACCGATCCGGCTGTA
647 AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCTACTACC
* * *
18339179 GCAACACTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
712 GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * **
18339244 AACGAACGGGCGGGCGGGCGGGCAGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGTT
777 AACG-A---GCGGGCGGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCC
* * *
18339309 GTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
837 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
18339373 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGA
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
18339438 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTCTTACGGTTCGGGATTTTTTTAAAACTTTTTC
66 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTC
*
18339503 GGAAGGAGTTTT-ACCCCAAACTTGGTAGACGTGATCCCTTGTA-TTTTGTTGGCATGCAC-AAA
130 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAAA
18339565 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
194 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
18339630 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGCTGTGAG
259 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
18339695 TTCTTGAGGATTGATGAGGGATACGGGGCCAATATAAGGGCGAAGTGCCAGCACCCATCGCACAT
324 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* **
18339760 CATGTGCGCACACCCCGCCGGCCCCACTGATCGCCGGAACCCCAATGTTGCCGGTCAGGTTCTCC
389 CATGTGCGCACACCCC-CCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** * *
18339825 GACGATGCTCCAGCGACGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAA
452 GACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
* ** * * * *
18339890 CATGTGCTGCTGCAACCCTTAGTTCGGTCTGATCATAGATTGGGAATGAACTCCGTATGCTTAGA
516 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * ** * * *
18339955 CTGGGAGTGAACTCTGTACACCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTCAGCCGGCCA
581 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * *
18340020 GAGGGGCGGGATGCCCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTG-TCGATCCTACTA
646 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCT-GATCCTACTA
* ** * * * * * *
18340084 TCATAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAGGACAACCGAA
710 CCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
18340149 GAAACGAGTGGGCGGGCGAGCGGGCGGGCACTACGCCGGCTAGCGAGACGGGATGCGCAAGTCGT
775 GAAACGAGCGGGCGGGCG-GCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGT
* * * * * *
18340214 GGATCGCTAGGGTGGTCGGTGTGTCTAGGCACATCTTCAAATTTTTGCATGCCAATGCCATT
839 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
18340276 TTTATGACTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** *
18340341 CTCGTTTTCTATTTTTCACT-ATTTTCAAAACTTTTTACTGTTCGGGATTTTTTAAAATTTTTTC
66 CTCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
** * * *
18340405 GGAAGGAGTTTTGGAACCAGACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATACA-AAAAA
130 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
18340469 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCA
195 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
18340534 GATACTTTAATGCCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACT
260 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
18340599 TCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
325 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
18340664 ATGTGTGCGCACCCCCCGACCCCCCGATCGTCGGAACCCTAATGTCGCCGGTCAGGTTCTCCGGC
390 ATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG---T-----
* * *
18340729 GATGCTCCGACGATGCTCCGACGATGGTGCCCCGGCAAAGAAAATTGTGGCACCAGCACATGCCC
447 --T-CTCCGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCC
* *
18340794 GAGCCCAGCTTGTGCTGTCGCAA-CC-C--T-C-G---G---TT----T-GG--T---CT--G-A
508 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
18340834 T-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCACAAAATGAGCGTGCGGGCGTTCA
573 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
18340898 GCCGGCCAAAGGGGCAGGATGCCCAAGTCGGGGATCGACCGGGTCCCCCTCTGTGTGTTG-TCGA
638 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCT-GA
* ** * * * * *
18340962 TCCTGCTGGCGCAACCCTCGGTCTGAT-TCAATCTTAGACTGCGAATGAACTCCGTATGCCTAA-
702 TCCTACTACCGCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * **
18341025 CCAACCGATGAAAC-A---AGC--G-GGCGGACGGGCACTACGCCGACGAGAGAGATGGGATGCG
766 CCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCG
* * *
18341083 CAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCATAT-TTCCATATTTCTACATGCCAAT
831 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-CATATTTCTGCATGCCAAT
18341147 GCCATT
895 GCCATT
* * * **** *
18341153 TTTATAGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGAAAAATAG-AAGACGA
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* **
18341217 CTCGTTTTCCATTTTTCATGATTTTCAAAACTTTTTACGGTTC-------------A-------G
66 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * * **
18341262 G-AGGAGTTTTTGCGCCAAACTTGGTACACCTGATCCTTGCAATTTTT-TTGGCATGTGCAAAAA
131 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TATTTTTGTTGGCATGCACAAAAA
* *
18341325 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCA
195 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
18341390 GAGACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
260 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
18341455 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACATT
325 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
18341520 ATGTGCGCACACCCCCCCGACCACCTCGATCGCCGGAACCTCAATGCCGTCGGTAAGGTTCTCCG
390 ATGTGCGCACA-CCCCCCGGCC-CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
18341585 ATGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGTGGCTCCAGCACATGCCCGAGGTCCAG
453 ACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA-GCCCAG
* * * * *
18341650 CATGTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGA
516 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
** * * * * *
18341715 CTGGGAATGAACTTTGTAAGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGGTCA
581 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * * * * *
18341780 GAGGGGCGTGATGCGCAAGTCGAGGATCGGCCCGATCCCACTCTACGTGATG-TCGATCCTACTA
646 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCT-GATCCTACTA
* * *
18341844 TCGTAACCCTC-GATCCGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCGA
710 CCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
18341908 CGAAACGAGGGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACAGGATGCACAAGCCG
774 CGAAACGAGCGGGCGGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCG
* * * *
18341973 TGGATCGATAGGGTGGTAGGAGGGTTTAGGCACTTCTTCATATTTCTGCGTGCCAATGCTATT
838 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
18342036 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGA
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** *
18342101 CTCGTTTTCTATTTTTCACAATTTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
66 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
18342166 GAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTTTTTTTTTTGGCACGCACAAAACA
131 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
18342231 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
196 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18342296 ACACTTTAATGGCTACTGGCAACAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
261 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
18342361 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCGGCACCCATCACACATCA
326 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
18342426 TGTGCACACAGCCCCGCGACCCCCCCGGTCGCCAGAACCCCAATGCCTCCGGTCAAGTTCT-C--
391 TGTGCGCACA-CCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
*
18342488 C---G----GCGATGGTGCCCCGACGAAGAGAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
454 CGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
* * ** * *
18342546 GTGCTGCTGGAACCCTTC-GTCCAATCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACT
519 GTGCTGCCGCAACCC-TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
18342610 GGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGTGTGCGGGCGCTCAGTCGGCCAGA
583 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * * * *
18342675 GGGGAGGGATGCGCAAGTCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGCTGATACTGCTGCTG
648 GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCTACTACCG
* * *
18342740 CAACCCTCAGTCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACTGA-TAA
713 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * ** * *
18342804 A--A-------TG-AGCGAACGGGCACTAGGCCGGCCAGA-AGGACAGGATGCGCAAGCCGTCGA
778 ACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGA-GACAGGATGCGCAAGCCGTGGA
* * * *
18342858 TCCATAGGGTGGTAGGTGCGTTTAGGCACATCTTCGTATTTCTACATGCCAATGCCATT
842 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
18342917 TTTATGGCTTGGAAATTCATACAATGGTCCCTTAAGACTTCACATGAAGTTTCATGGCAAGACTA
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
18342982 CTCGTTTTCAATTTTTCACGATTTTT-AAAATTTTTACGGTTCGGGATTTTTTTAAATTTTTTCA
66 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * * *
18343046 AAAGGAGTTTTGGCCCCAAACTTTGCAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAA
131 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
18343111 ATTCAGCTAAAAACTCAAAGTGTACAAGAATTTGTGACCATTTGAAATAAGTGTCCCCATATCAG
196 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18343176 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTT
261 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
18343241 CTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATAA
326 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
18343306 TGTGCGCACA----AC--CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACG
391 TGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
*
18343365 ATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
456 ATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
18343430 TGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCGGTATGCTTATACTGG
520 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
18343495 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAGCCGGCCAAAAG
585 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
** * * * * * * *
18343560 GGC-GGATATGCAAGCCGGGTATCGATCGGGTCCCTCTCTGCATGCT-ATCGAT-CTGGCTACTG
650 GGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCT-GATCCT-ACTACCG
* ** * *
18343622 TAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGGACTCCGTATGCCTAAGCCAACCGACGAA
713 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18343687 AAGAACGGGCGGACAGGTGGGCGGGCACTACGCCGGCCAGAGAGAC-GAGATGCGCAAGCCGTGG
778 ACGAGCGGGCGGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACAG-GATGCGCAAGCCGTGG
* * * *
18343751 ATCGATAGGGTGGTAGGTGGTTTTAGGCACACCATCATATTTCTGCGTGCCAATGCCATT
841 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
18343811 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** *
18343876 CTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTCAAAATTTTTTCG
66 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
18343941 AAAGGAGTTTTGGCCCCAGACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
131 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
18344006 ATTCAGCGAAAAACTCGACGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAG
196 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18344071 ACATTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
261 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
18344136 CTCTAGGTTTGATGAAGGATATGGTGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCA
326 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * **
18344201 TGTGCGCATGCCCCCCCCAGCCCACCCGATCGCCGGAACCCCAAAACCGCCGGTCAGGTTCTCC-
391 TGTGCGCA--CACCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * **
18344265 AGCGATGCTCTGACGATGGTGCCTC-AGCGAAGAAAAATGCGGCACCAACACATGCCTAAGCCCA
453 A-CGATGCTCCG-CGATGGTGCCCCGA-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* *
18344329 GCATGTGCTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTT-G
515 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
18344393 ACTGGGAATGAACTTCATATGCCTAAGTGAAGCCACGAAACGAGCGTGCAGGCGCTCAACCGGCC
580 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * ** *
18344458 AGAGGGGTGGGATGCGCAAGCCAGGGATCGACTGGGTCCCCTTCTGCGTGCTGCCAATCCTACTT
645 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCTACTA
* * * * * * *
18344523 CCACAACCCTC-GACTGGTCTAATCTTAGACTGGGAATGAACTCCGTAAGACTAAGCTAACCGAC
710 CCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * * *
18344587 GAAACGAGCGCGCGGGCGGAGGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCACAGGCCGT
775 GAAACGAGCGGGCGGGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGT
* * ***
18344652 GGATCGATAGGGTGTTAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATT
839 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
18344714 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGA
1 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * **
18344779 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCACGATTTTTTAAAATTTTTTCG
66 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * ** * * *
18344844 GAACGCGTTTTAGCCCCAAACGTCATAGACATGATCCTTTTATTTTTGTTGGCATGCAAAAAAAA
131 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
18344909 ATTCAGCTAAAAACTCGAAGTGTCCAAGATTTTGTGACCAATTAAAAAAAGTGTCCCCATTTCAG
196 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
18344974 ACACTTTAATGGCCACTGGCAACAAACCTGTAAAATCTCAAACGCTTTTTAA-GGGGTGTGAGTT
261 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18345038 CTTGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
326 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * **
18345103 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAACGCCGCCGGTCAGGTTCTTTGA
391 TGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* *
18345168 CGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCA
454 CGATGC-TCCGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
18345233 TGTGGTGCCGTAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACT
518 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * * * *
18345298 AGGAATGAACTCCGTACGCCTAAGTCAACTCATGAAACGAGTGTACGAGCGCTCAGTCGGCCAGA
583 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * *
18345363 GGGGTGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTATGCGTGCTGCTGATCCTACTGCTG
648 GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCTACTACCG
* * * * *
18345428 CAACCCTCTGTTCGGT-TCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGACGA
713 CAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
18345492 AA
777 AA
18345494 GATTTTGTGA
Statistics
Matches: 9132, Mismatches: 1127, Indels: 566
0.84 0.10 0.05
Matches are distributed among these distances:
844 79 0.01
845 383 0.04
846 3 0.00
847 63 0.01
848 19 0.00
849 2 0.00
850 2 0.00
852 1 0.00
853 1 0.00
854 2 0.00
855 41 0.00
856 384 0.04
857 15 0.00
858 69 0.01
859 2 0.00
860 23 0.00
862 1 0.00
863 1 0.00
864 1 0.00
865 4 0.00
867 3 0.00
868 5 0.00
870 2 0.00
871 1 0.00
872 39 0.00
873 5 0.00
874 153 0.02
875 19 0.00
876 337 0.04
877 404 0.04
878 26 0.00
879 3 0.00
880 464 0.05
881 184 0.02
882 147 0.02
883 313 0.03
884 135 0.01
885 110 0.01
886 163 0.02
887 8 0.00
888 1 0.00
889 18 0.00
890 3 0.00
891 3 0.00
892 28 0.00
893 415 0.05
894 450 0.05
895 286 0.03
896 66 0.01
897 7 0.00
898 1 0.00
899 155 0.02
900 435 0.05
901 964 0.11
902 419 0.05
903 986 0.11
904 336 0.04
905 282 0.03
906 228 0.02
907 326 0.04
908 31 0.00
911 4 0.00
912 71 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
ATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCTACTACCGCAA
CCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
AGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
Found at i:18338168 original size:26 final size:26
Alignment explanation
Indices: 18338139--18338188 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18338129 CCGGTCCGAT
* *
18338139 CTTATACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18338165 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18338189 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18339052 original size:26 final size:26
Alignment explanation
Indices: 18339016--18339068 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18339006 CCGATCCGAT
*
18339016 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18339042 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18339068 C
1 C
18339069 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18340742 original size:11 final size:11
Alignment explanation
Indices: 18340722--18340754 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
18340712 CGGTCAGGTT
*
18340722 CTCCGGCGATG
1 CTCCGACGATG
18340733 CTCCGACGATG
1 CTCCGACGATG
18340744 CTCCGACGATG
1 CTCCGACGATG
18340755 GTGCCCCGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.15, C:0.36, G:0.30, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:18341737 original size:26 final size:26
Alignment explanation
Indices: 18341685--18341738 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
18341675 GGTCTGATCT
*
18341685 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTAAGCC
**
18341711 TAGACTGGGAATGAACTTTGTAAGCC
1 TAGACTGGGAATGAACTCCGTAAGCC
18341737 TA
1 TA
18341739 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTAAGCC
Found at i:18342612 original size:26 final size:26
Alignment explanation
Indices: 18342576--18342628 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18342566 CCAATCCGAT
* *
18342576 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18342602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18342628 C
1 C
18342629 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18343488 original size:26 final size:26
Alignment explanation
Indices: 18343459--18343511 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18343449 CCGGTCCGAT
18343459 CTTAGACTGGGAATGAAC-TCGGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
18343485 CTTATACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18343511 C
1 C
18343512 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18344413 original size:25 final size:25
Alignment explanation
Indices: 18344367--18344414 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
18344357 TCCAATCTTA
*
18344367 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCATATGCTT
*
18344392 GACTGGGAATGAACTTCATATGC
1 GACTGGGAATGAACTCCATATGC
18344415 CTAAGTGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
GACTGGGAATGAACTCCATATGCTT
Found at i:18345851 original size:26 final size:26
Alignment explanation
Indices: 18345822--18345874 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18345812 TTGGTCCAAT
18345822 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
18345848 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18345874 C
1 C
18345875 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18345993 original size:558 final size:558
Alignment explanation
Indices: 18344934--18346051 Score: 1720
Period size: 558 Copynumber: 2.0 Consensus size: 558
18344924 CGAAGTGTCC
18344934 AAGATTTTGTGACCAATTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAACAA
1 AAGATTTTGTGACCAATTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAACAA
** *
18344999 ACCTGTAAAATCTCAAACGCTTTTTAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
66 ACCTGTAAAATCTCAAACGCTCCTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
18345064 CTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
131 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCCGGCCCCCCC
* * **
18345129 GATCGTCGGAACCCCAACGCCGCCGGTCAGGTTCTTTGACGATGCTTCGGCGATGGTGCCCCGAC
196 GATCGTAGGAACCCCAACGCCGCCGGTCAAGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGAC
* * * * *
18345194 GAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGGTGCCGTAACCCTCGATCTGGT
261 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACACTCGATCTGGT
* **
18345259 CCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTACGCCTAAGTC
326 CCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTACGCCTAAGTC
* * * *
18345324 AACTCATGAAACGAGTGTACGAGCGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATC
391 AACTCATGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATC
* ** ** * *
18345389 GGCCAGGTCCCCCTATGCGTGCTGCTGATCCTACTGCTGCAACCCTCTGTTCGGTTCAATCTTAG
456 GGCCAGGTCCCCCTATGCCTGCTGCCAATCCTACTGCCACAACCCTCGGTTCGGTCCAATCTTAG
* *
18345454 ACTGGGAATGAACTCCATATGCCTAAGCCAACTGACGA
521 ACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGA
* * *
18345492 AAGATTTTGTGACCAATTAAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAA
1 AAGATTTTGTGACCAATTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAACAA
*
18345557 ACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAACGCTCCTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
18345622 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCCGG-CCCCT
130 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCCGGCCCCCC
*
18345686 CGATCGTAGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGC-TCTGGCGATGGTGCCCCG
195 CGATCGTAGGAACCCCAACGCCGCCGGTCAAGTTCTCCGACGATGCTTC-GGCGATGGTGCCCCG
* * * * * *
18345750 AGGAGGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGTAACATTTGATTTG
259 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACACTCGATCTG
* *
18345815 GTCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
324 GTCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTACGCCTAAG
* * *
18345880 TCAAC-CAATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGTCGGGG
389 TCAACTC-ATGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGG
* * * *
18345944 ATCGGCCGGGTCCCCCTCTGCCTGCTGCCAATCCTGCTGCCATAACCCTCGGTTCGGTCCAATCT
453 ATCGGCCAGGTCCCCCTATGCCTGCTGCCAATCCTACTGCCACAACCCTCGGTTCGGTCCAATCT
*
18346009 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
518 TAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGA
18346050 AA
1 AA
18346052 CAAGCGGGCG
Statistics
Matches: 505, Mismatches: 52, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
557 3 0.01
558 409 0.81
559 93 0.18
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (558 bp):
AAGATTTTGTGACCAATTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAACAA
ACCTGTAAAATCTCAAACGCTCCTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCCGGCCCCCCC
GATCGTAGGAACCCCAACGCCGCCGGTCAAGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGAC
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACACTCGATCTGGT
CCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTACGCCTAAGTC
AACTCATGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATC
GGCCAGGTCCCCCTATGCCTGCTGCCAATCCTACTGCCACAACCCTCGGTTCGGTCCAATCTTAG
ACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGA
Found at i:18347484 original size:26 final size:26
Alignment explanation
Indices: 18347433--18347485 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18347423 CCGGTGTGAT
*
18347433 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18347459 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18347485 C
1 C
18347486 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18349959 original size:26 final size:26
Alignment explanation
Indices: 18349923--18349975 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18349913 CCGGTCCGAT
18349923 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18349949 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18349975 C
1 C
18349976 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18350278 original size:886 final size:886
Alignment explanation
Indices: 18348309--18350731 Score: 3444
Period size: 899 Copynumber: 2.7 Consensus size: 886
18348299 GCTGCCGTAG
* * * * ** *
18348309 CCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAACCGATGAAATG
1 CCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACG
* * *
18348374 A--ACGGGCGGGCGGGCACCATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
66 AGTGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * * *
18348437 TGGTAAGTTGGTTGAGGTACATCTTTATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAA
131 TGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
18348502 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTT
196 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTT
18348567 TCACGATTTTTGAAACTTTTTGTGGTTCGGGATGTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
261 TCACGATTTTTGAAACTTTTTGTGGTTCGGGATGTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
18348632 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTTCAGCTAAAAAC
326 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAAC
*
18348696 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATCGCT
390 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
18348761 ACTAGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGTGGCTGTGAGTTCTCGAGGTTTGATG
455 ACT-GCAGCAAACCTGTAAAATCTCAAATGCTATTTAAG-GGGTGTGAGTTCTCGAGGTTTGATG
* * * *
18348826 AGGGATAGGGGG-CAATATAAGGGCCAAGTACCAACA-CAAT-AGCACATGATGTGCGCACACGC
518 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA-CACATAATGTGTGCACAC-C
* ** * *
18348888 CCCCCCGGCCCCCCCAATTATCGGAACCCCAATGTGGCCGGTAAGGTTCTCCAGCGATGCTCTGA
581 CCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGG-T-T----C--T-C-C-GA
* *
18348953 CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCAC
634 CGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCAC
* * *
18349018 AACCCTCGGTCTGGTCCAATCTTAGAGTGGAATGAACTCCGTATGCATCAATAGGGAATGAACTC
699 AACCCTCGGTCCGGTCCAATCTTAGACTGGAATGAACTCCATATGCATCAATAGGGAATGAACTC
* * * * ** *
18349083 TGTATGCCTAAGTCAACTCATGAAATGAACGTATGGGCGCTCAGCCAGCCAGCCAGAGGGGTGGG
764 CGTATGCCTAAGTCAACCCACGAAATCAACGTATGGGCGCTCAGCCAG-C-GCCAGAGGGACGGA
* * * *
18349148 TTGCGCAAGCTGGGGATCAACCGGGTCCTCCTCTGCGTGCTGCCGATCCTGCTACCACAA
827 ATGCGCAAGCCGGGAATCAACCAGGTCCTCCTCTGCGTGCTGCCGATCCTGCTACCACAA
* * * * *
18349208 CCCTTAGTCCGATCCAATCTTAGACTGGGACTGAACTTCGTATGCCTAAGCCAACTGACGAAACG
1 CCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACG
* * * * *
18349273 AGT--GGGCGGGCGGGCTCTACGCCGACCAGAGAGACGTGATACGCAAGTCGTGGATCGATAGGG
66 AGTGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
18349336 TGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
131 TGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * *
18349401 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTTGTTTTCTATTTT
196 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTT
* ** ** * * * * * * *
18349466 TCATGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTTAAATTTTTTTGAAAGGAGTTTTGACC
261 TCACGATTTTTGAAACTTTTTGTGGTTCGGGATGTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
18349531 CCAAACTTGGTAGACGT-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
326 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * *
18349595 CGAAGTGTACAAGTTTTTGTGGCCATTTGAAAAAAGCGGCCCCATTTCAGACACTTTAATGGCTA
391 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
18349660 CTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGGGTTCTTGAGGTTTGATGAA
456 CTG-CAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAG
18349725 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATAATGTGTGCACA-CCCCC
520 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATAATGTGTGCACACCCCCC
*
18349789 CCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCGACG
585 CCGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGGTGCCCCGACG
** * * *
18349854 AAGAAAAATGTAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAA-CCTGCGGTCCGGT
650 AAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCT-CGGTCCGGT
* *
18349918 CCGATCTTAGACTGGGAATGAACTCCATATGC-TTAGACT-GGGAATGAACTCCGTATGCCTAAG
714 CCAATCTTAGACT-GGAATGAACTCCATATGCATCA-A-TAGGGAATGAACTCCGTATGCCTAAG
* * *
18349981 TCAACCCACGAAA-CAAGCGTGTGGGTGCTCAG-CTG-GCCAGAGGGACGGAATGCG-ATAGCCG
776 TCAACCCACGAAATCAA-CGTATGGGCGCTCAGCCAGCGCCAGAGGGACGGAATGCGCA-AGCCG
** * * *
18350042 GGAATCGGCCAGGTACC-CCT-TCGCGTGCTGTCGATCCTGTTGCCACAA
839 GGAATCAACCAGGT-CCTCCTCT-GCGTGCTGCCGATCCTGCTACCACAA
* * * *
18350090 CCCTCAGTGCGGTCCAATCTTAGACTGGGAAGGAACTCCATATGCCTAAGCCAACCGACAAAACG
1 CCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACG
18350155 AGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
66 AGT--GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
***
18350220 GGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTA
129 GGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
18350285 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATT
194 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATT
18350350 TTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATGTTTTAAAATTTTTTCGGAAGGAGTTTTGG
259 TTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATGTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* *
18350415 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGTCATGCACAAAAACATTCAGCTAAAAA
324 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
18350480 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGG
389 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
18350545 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
454 TACT-GCAGCAAACCTGTAAAATCTCAAATGCTATTTAA-GGGGTGTGAGTTCTCGAGGTTTGAT
*
18350610 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCC
517 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATAATGTGTGCACACCC
* **
18350675 CCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAACTTCTCCGACGATG
582 CCCCCGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATG
18350732 CTCCGACGAT
Statistics
Matches: 1361, Mismatches: 140, Indels: 56
0.87 0.09 0.04
Matches are distributed among these distances:
881 2 0.00
882 114 0.08
883 2 0.00
884 3 0.00
885 87 0.06
886 314 0.23
887 139 0.10
888 85 0.06
889 55 0.04
890 1 0.00
894 1 0.00
895 1 0.00
896 33 0.02
897 41 0.03
898 157 0.12
899 325 0.24
900 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (886 bp):
CCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACG
AGTGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTT
TCACGATTTTTGAAACTTTTTGTGGTTCGGGATGTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATAATGTGTGCACACCCCCCC
CGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGGTGCCCCGACGA
AGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTCC
AATCTTAGACTGGAATGAACTCCATATGCATCAATAGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAATCAACGTATGGGCGCTCAGCCAGCGCCAGAGGGACGGAATGCGCAAGCCGGGAATCA
ACCAGGTCCTCCTCTGCGTGCTGCCGATCCTGCTACCACAA
Found at i:18351460 original size:14 final size:14
Alignment explanation
Indices: 18351443--18351472 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
18351433 ATGCTCCGAC
18351443 GATGGTGCCCCGGT
1 GATGGTGCCCCGGT
*
18351457 GATGGTGTCCCGGT
1 GATGGTGCCCCGGT
18351471 GA
1 GA
18351473 AGAAAAATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.23, G:0.43, T:0.23
Consensus pattern (14 bp):
GATGGTGCCCCGGT
Found at i:18351570 original size:26 final size:26
Alignment explanation
Indices: 18351541--18351593 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18351531 CTGGTCCAAT
*
18351541 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18351567 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18351593 C
1 C
18351594 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18355673 original size:706 final size:703
Alignment explanation
Indices: 18354243--18356399 Score: 3428
Period size: 706 Copynumber: 3.0 Consensus size: 703
18354233 TCTGATTCTA
* *
18354243 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGTGGGTGTG
1 TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACGAGCGGGC----------
* * * * * * * *
18354308 TGGGCACTAC-GCCAGCCAGAGGGATGGGTTTCGCAAGCCGTGGATCGATAGGGTGATAGGTGGG
56 -GGGCACTACAG-CGGCCAGAGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGG
* * *** *
18354372 TTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
119 TTTAGGCACATCCTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATA
* * *
18354437 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTT
184 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCACGATTTTC
* *
18354502 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAAAAGTTCTGGCCCTAAACTTGGT
249 AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAAAAGATCTGGCCCTAAACTT-GT
** * *
18354567 AGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTGGAAGTGTAAA
313 AGTTGTGATCC-TGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
18354632 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
377 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
*
18354697 CCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGG
442 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGG
* *
18354762 CCAATATAAGGGCCAAGTACCAGCACTCTTTGCACATCAGGTGCGCACACCCCCCGGCCCCCCCG
507 CCAATATAAGGGCCAAGTACCAGCACTCTTCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
*
18354827 ATCGTTAC-G-ACCCCGATGCCGTCGGACAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
572 ATCG-T-CGGAACCCCGATGCCGCCGGACAGGTTCT-CGACGATGCTCCGACGATGGTGCCCCGA
* * * ** *
18354890 TGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGGTTCTGCTGCCACAACCCTCAGT-TAG
634 CGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGGATGTGCTGCCGTAACCCTCGGTCT-G
*
18354954 GTCCAA
698 GTCCAG
18354960 TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGG-ACTAC
1 TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGGCACTAC
* *
18355024 AGCGGCCAGAGAGTCGGGATGTGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACAT
65 AGCGGCCAGAGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACAT
18355089 CCTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGC
130 CCTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGC
18355154 CTTCACGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTG
195 CTTCACGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTG
* * *
18355219 CGGTTCGGGATTTTTTAAAATTTTTTTGAAAAATGATCTGGCCCTAAACTTGACAGTTGTGATCC
260 CGGTTCGGGATTTTTTAAAATTTTTTCGAAAAAAGATCTGGCCCTAAACTTG-TAGTTGTGATCC
18355284 TGGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
324 T-GTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
18355349 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATC
388 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATC
18355414 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGG
453 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
18355479 GCCAAGTACCAGCACTCTTCGCACGTCATGTGCGCACATCCTCCGGCCCCCCCGATCGTCGGAAC
518 GCCAAGTACCAGCACTCTTCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAAC
18355544 CCCGATGCCGCCGGACAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
583 CCCGATGCCGCCGGACAGGTTCTC-GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
*
18355609 GACATCAGCACATGCCCGAGCCCAGGATGTGCTGCCGTAACCCTCGGTCTGGTCCAG
647 GACACCAGCACATGCCCGAGCCCAGGATGTGCTGCCGTAACCCTCGGTCTGGTCCAG
*
18355666 TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACG
1 TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACA
*
18355731 GCGGCCAGAGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGATTTAGGCACATC
66 GCGGCCAGAGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATC
18355796 CTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCC
131 CTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCC
* *
18355861 TTCACGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCACGATTTTCAAAACCTTTTAC
196 TTCACGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGC
* * *
18355926 GGTTCGAGATTTTTTAAAATTTTTTCGAAAAACGATCTGACCCTAAACTTTGTAGTTGTGATCCC
261 GGTTCGGGATTTTTTAAAATTTTTTCGAAAAAAGATCTGGCCCTAAAC-TTGTAGTTGTGAT-CC
*
18355991 TGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGAC
324 TGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
18356056 CATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
389 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCT
* *
18356121 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGG
454 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGG
**
18356186 -CACAGTACCAGCACTCTTCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAAC
519 CCA-AGTACCAGCACTCTTCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAAC
* * * *
18356250 CCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGC
583 CCCGATGCCGCCGGACAGGTTCTCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* *
18356315 GACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCC-G
647 GACACCAGCACATGCCCGAGCCCAGGATGTGCTGCCGTAACCCTCGGTCTGGTCCAG
*
18356371 ATCTTAGACTGGGAATGAACTCCGTATGC
1 -TCTTAGACTGGGAATGAACTCCCTATGC
18356400 TTAGACTGGG
Statistics
Matches: 1352, Mismatches: 75, Indels: 37
0.92 0.05 0.03
Matches are distributed among these distances:
704 1 0.00
705 12 0.01
706 1275 0.94
707 11 0.01
717 53 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (703 bp):
TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACA
GCGGCCAGAGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATC
CTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGC
GGTTCGGGATTTTTTAAAATTTTTTCGAAAAAAGATCTGGCCCTAAACTTGTAGTTGTGATCCTG
TATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACTCTTCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
GATGCCGCCGGACAGGTTCTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACA
CCAGCACATGCCCGAGCCCAGGATGTGCTGCCGTAACCCTCGGTCTGGTCCAG
Found at i:18356402 original size:26 final size:26
Alignment explanation
Indices: 18356373--18356423 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18356363 CTGGTCCGAT
18356373 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18356399 CTTAGACTGGGATTGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
18356424 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18357891 original size:907 final size:890
Alignment explanation
Indices: 18355641--18359066 Score: 4626
Period size: 873 Copynumber: 3.8 Consensus size: 890
18355631 CAGGATGTGC
* *
18355641 TGCCGTAACCCTCGGTCTGGTCCAGTCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCG
1 TGCCGCAACCCTCGTTC-GGTCCAGTCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCG
* *
18355706 ACG-AAACGAGCGGGCGGGCACTACGGCGGCCAGAGAGACGGGATGCGCAAGCCATGGATTGATA
65 ACGAAAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA
* *
18355770 GGGTGGTAGGTGGATTTAGGCACATCCTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
130 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* *
18355835 AAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTAT
195 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * *
18355900 TTTTCACGATTTTCAAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAA-AACGATCT
260 TTTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGAAAGGA-GTTTT
* * * ** * *
18355964 GACCCTAAACTTTGTAGTTGTGATCCCTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAA
324 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAA
* *
18356029 AACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATG
389 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
18356094 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTG
454 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
18356159 ATGAGGGATAGGGGGCCAATATAAGGG-CACAGTACCAGCACTC-TTCGCACATCATGTGCGCAC
519 ATGAGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCACCCATT-GCACATCATGTGCGCAC
* * *
18356222 ACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCG
582 ACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG
* * **
18356287 ACGATGGTGCCCTGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
647 ACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAACCCAGCATGTGCTACCG
* * * *
18356352 TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATTGAAC
712 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTCTGCTTAGACTGGGAATGAAC
* * * * *
18356417 TCTGTATCCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGAT
777 TCTTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * *
18356482 GCGCAAGCCGAGGCTCGACCGGGTCCCCCTCTACATGCTGGCGATCCTG
842 GCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * * * * *
18356531 GGCCGCAACCCTTTGTTCGGT-CTGATCTTAGACTTGGAATGGACTCCGTATGGCTAAGCCAACC
1 TGCCGCAACCC-TCGTTCGGTCCAG-TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACC
*
18356595 GAC-AAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGTTGCGCAAGCCATGGAT
64 GACGAAAACGA----GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
* * *
18356659 CGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATACCA-TTTTATGG
125 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
18356723 CTTGTAAATTCACACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCGTTT
190 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* ** * *
18356788 TCTATTTTTCATGATTTTTGAAACATTTTACGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
255 TCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAG
* ** * *
18356853 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCACGTACAAAAAAATTCGGC
320 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGC
*
18356918 TAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
385 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
18356983 AATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
450 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
18357048 TTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAAATCATGTGCGC
515 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGC
* * * *
18357113 ACACCCCCCTGGCCCCCCCGATCGTCGGAACCCCAGTACCGTCGGTCAGGTTCTTCGGCGATGCT
580 ACACCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT
* *
18357178 CCGACGATGGTGCCCCGACGAAGAAAAATGCGACACGAGCACATGCCCGAACCCAGCACGTGCTA
644 CCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAACCCAGCATGTGCTA
* *
18357243 CCGCAAACCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTCTGCTTAGACTAGGAATG
709 CCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTCTGCTTAGACTGGGAATG
* * *
18357308 AACTCTTTATGCCTAAGTCAACCCACGAAATGAGCTTGCGGGCGCTCAGCCGGCCAGAGGTGCGG
774 AACTCTTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * *
18357373 GATGAACAAGTCGGGGATCGGTCGGGTCCCCCTATGCGTGCTGCCGATCATG
839 GATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
18357425 CTGCCGCAACCCTCAGTTCGGTCCAGTCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAA-C
1 -TGCCGCAACCCTC-GTTCGGTCCAGTCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACC
*
18357489 GACGAAACGAGCGGGAGGGCGGGCAGGCAGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGC
64 GACGAAA--A-C--GA------GC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
18357554 AAGCCACGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
114 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
18357619 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
179 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
18357684 ATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTT
244 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTT
*
18357749 TTCGAAAGGAGGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCTTGCACA
309 TTCGAAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACA
* * *
18357813 AAAACATTTAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
373 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
18357878 TTTAGACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
438 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* **
18357943 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCACCGCA
503 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCA
* * ** *
18358008 CATCATGTGTGCACACCCCCCCGG-CCCCCCGATCGCCAGAACCCCAATTTCG-CTAGTCAGGTT
568 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTT
* * * *
18358071 CTTCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAGAAATGCGGCACCAGCACATGCCC-AAG
631 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAA-
* * * *
18358135 CCCAGCATGTTCTATCGTAACCCTCGGTCTGG--------T---CT-GG--T---CT-GGTCTG-
695 CCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTCTGC
* * *
18358181 --AGACTGGGAATGAA-T-TTCGTATGCCTAAGTTAACCCACGAAACGAGCGTGTGAGCGCTCAG
760 TTAGACTGGGAATGAACTCTT--TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
18358242 CCGGCCAGAGGGGCGGGATGCATAAGCCGGGGATCGATCGGGT-CCCCTCTGTGTGCTGTCGATC
823 CCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
18358306 CTG
888 CTG
*** * * * ** ** *
18358309 TAGCTATAACCCTTGGTCTAG-CTTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCGAAC
1 T-GCCGCAACCCTCGTTC-GGTCCAG-TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * *
18358373 AGATGAAACGAGCGAGCGGGTGGGCACCACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGAT
63 CGACGAAA--A-CGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
*
18358438 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGG
125 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
18358503 CTTGTAAGTTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
190 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
18358568 TCTATTTTTCACGATTTTCAAAACTTTTCACTG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGA
255 TCTATTTTTCACGATTTTCAAAACTTTTTAC-GATTCGAGATTTTTTAAAATTTTTTCGAAAGGA
18358632 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAA-TCAG
319 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAG
* * *
18358696 CTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAGAAAGGTGTCCCCATTTCAGACACTT
384 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
18358761 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGATGTGAGTTCTCAAG
449 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
18358826 GTTTGATGAGAGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATTGCACATCATGTGCG
514 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCG
** * *
18358891 CACAATTCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGC
579 CAC-ACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC
* * * * * *
18358956 TCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACTTGCCCGAGCCCAGTATGTGCT
643 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAACCCAGCATGTGCT
* ** * ** *
18359021 GCTACAACCCTTGGTCCAGTCCAATCTTAGACTAGGAATGAACTCC
708 ACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCC
18359067 TTATGCCTAA
Statistics
Matches: 2238, Mismatches: 237, Indels: 121
0.86 0.09 0.05
Matches are distributed among these distances:
872 195 0.09
873 385 0.17
874 3 0.00
875 1 0.00
877 2 0.00
881 1 0.00
883 10 0.00
884 66 0.03
885 101 0.05
887 1 0.00
888 5 0.00
889 4 0.00
890 58 0.03
891 4 0.00
892 1 0.00
893 367 0.16
894 373 0.17
895 55 0.02
896 2 0.00
897 1 0.00
898 2 0.00
900 2 0.00
902 6 0.00
904 1 0.00
905 3 0.00
906 209 0.09
907 369 0.16
908 11 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
TGCCGCAACCCTCGTTCGGTCCAGTCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGA
CGAAAACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCC
CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGA
TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAACCCAGCATGTGCTACCGCAAC
CCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTCTGCTTAGACTGGGAATGAACTCTT
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCAC
AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
Found at i:18362871 original size:26 final size:26
Alignment explanation
Indices: 18362835--18362912 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
18362825 CCAGTCTGAT
18362835 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18362861 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18362887 CTTAGACTGGGAATG-ACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18362912 C
1 C
18362913 CTAAGTCGAC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 11 0.22
26 39 0.78
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18365254 original size:895 final size:894
Alignment explanation
Indices: 18362254--18365436 Score: 4189
Period size: 904 Copynumber: 3.5 Consensus size: 894
18362244 GTCCGGTCCG
* *
18362254 ATCTT-ATATTTCTGCGTGCCAATGCAATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
18362318 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTGACGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTT
*** * *
18362383 TGTTGTTAGAAATTTTTTAAAATTTTTTC-GAAAGACGTTTTGGCCCCAAACTTGGTAGACGTGA
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGA-GTTTTGGCCCCAAACTTGGTAGACGTGA
** * *
18362447 TCCTCATATTTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTT
195 TCCTTGTA-TTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
18362512 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
259 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
18362577 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
324 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
18362642 AAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACAGCCCCCCGGCCCCCCTGATCGCC
389 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCACC
* * * * * * * **
18362707 GGAACCTCAATGCTGTCGGTCAGGTTCTCCTGTGACGCTCGGACGATGGTGCACCGGTGAAGAAA
453 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* *
18362772 AATGCGGCACCAGCACATG-TCCGAGCCTAGCATATGCTGCTACAACCCTCGATCCAGTCTGATC
518 AATGCGGCACCAGCACATGCT-CGAGCCTAGCATGTGCTG-T-----CC-C-AACC---CT-A--
* *
18362836 TTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
568 --AGTCT-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * * * *
18362901 G-ACTCCGTATGCCTAAGTCGACCCACAAAACGAACGTGCGGGCGCTTAGCCGACCAGAGTGGCG
621 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCG
* * * * * *
18362965 GGATGCGGAAGCCGGGGATCGATCGGGTCCCCCTCCACATGCTGCCAATCCTGCTGCTGTGA-CC
686 GGATGCGTAAGCCGAGGATCGATCGGGTCCCCCTCTACATGCTGCCGATCCTGCT-CCG-CACCC
** * * *
18363029 TTTGGTCC-GATCTTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGA
749 TTCAGTCCAG-TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
** * * *
18363093 GCGGGC----GGGCACTACGCCTG-TTAGAGAGATGGGATGCGTAAGCCTTAGATCGATAGGGTG
813 GCGGGCGGGTGGGCACTACGCC-GACCAGAGAGACGGGATGCGCAAGCCATAGATCGATAGGGTG
*
18363153 ATAGGTGGGTTTAGGCAC
877 GTAGGTGGGTTTAGGCAC
* * *
18363171 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGAAAATTAATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
18363236 GCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTT
* * * *
18363301 TACGGTTCG-GTATTTTTTAAAACTTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGCG
131 TACGGTTCGAG-ATTTTTTAAAA-TTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * **
18363365 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAACCTTAAAGTGTACAAGATTTT
194 ATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
18363430 GTGACCATTTGAAAAAAATGTCCCCATTTTACACACTTTAATGGCTATTGGCAGCAAACCTGTAA
259 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
18363495 AATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATAT
324 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
18363560 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCACGATCACAG
389 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCG
* * *
18363625 GAACCCCAATGCCG-CTGGTCAGGTTCTCCGACGATGCACCGACGATGGTGCCCCAACGAAGAAA
454 GAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
** * * * * * ** *
18363689 AATATGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCACAACTCTCGGTCCGGTCTGATCT
518 AATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGTCCCAACCCTAAGTCTGGTCTGATCT
* ** * * *
18363754 TTGACTGGGAACAAACTCCGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCAT
583 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
18363819 GAAATGAGCGTAC-AGTCGCTCAACCAGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATCGG
648 GAAACGAGCGTGCGGGT-GCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATCGG
** * * * *
18363883 GTCCCCCTCTATGTGTTGCCGATCTTGCTGCCACAACCC-TCAGTGCAGTCTGATCTTAGAC-AG
712 GTCCCCCTCTACATGCTGCCGATCCTGCT-CCGC-ACCCTTCAGTCCAGTCTGATCTTAGACTA-
*
18363946 GGAATGAGCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAACCGGGCTGGCGGGCACTA
774 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG----CGGG-T---GGGCACTA
* *
18364011 CGCC-AGCCAGAGATG-CGGGATGCGCAAGCCATAGATCGATAGGGTGGTAGGTTGGTTTATGCA
831 CGCCGA-CCAGAGA-GACGGGATGCGCAAGCCATAGATCGATAGGGTGGTAGGTGGGTTTAGGCA
18364074 C
894 C
* *
18364075 ATCTTCATATTTCTACGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
18364140 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACCATTTTCGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTT
* * * *
18364205 TACAGTTCGAGATTTTCTAAAATTTTTTCGGAAAGAGTTTTAGCCCCAAACTTGGTAGATGTGAT
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * **
18364270 CCTTGTATTTTTATTGGTATGCACAAAAAAAATCA-CATAAAAACTTTAAGTGTACAAGATTTTG
196 CCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGC-TAAAAACTCGAAGTGTACAAGATTTTG
* *
18364334 TGACCATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAA
260 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * *
18364399 ATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGACCAATATA
325 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
18364464 AGGGCCACGTACCAGCACCCAAT-GCACATCATGTGCGCACACCTCCCCCGGCCCCCCCGATCAC
390 AGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCACA-C-CCCCCGGCCCCCCCGATCAC
* * *
18364528 CGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACGATGAA
452 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAA
*
18364593 AAATGCGGCACCAGCACATGCTTGAGCCTAGCATGTGCTGTCCCAACCCTAAGTCTGGTCTGATC
517 AAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGTCCCAACCCTAAGTCTGGTCTGATC
** * *
18364658 TTAGACTCAGAATGAACTCCATATGCTTGGACT-GGAATGAACTCCGTATGCCTACA-TCAACCC
582 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA-AGTCAACCC
* *
18364721 ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCAACCG
646 ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATCG
* * * *
18364786 GGTCCTCCTCTGCATGCTACCGATCCTGCTATCGCACCCTTCAGTCCAGTCTGATCTTAGACTAG
711 GGTCCCCCTCTACATGCTGCCGATCCTGCT-CCGCACCCTTCAGTCCAGTCTGATCTTAGACTAG
*
18364851 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCACTATGCCGACCA
775 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCACTACGCCGACCA
* * * *
18364916 GAGAGACGGGATGCACAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCAC
840 GAGAGACGGGATGCGCAAGCCATAGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
18364971 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT-ATACAATGGTCCCTTAA
1 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * * * *
18365035 GCCTTGACGTGAAGTTTGATGGCAAGACGACTTGTTTTCTTTTTTTCACGATTTTCAAAACTTCT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTT
* * * * * *
18365100 TGCGGTTCGGGATTTTTTAAAATCTTTTCGGAAGGATTTTTTGCCCCAAACTTGGTAGACGTGAT
131 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
*
18365165 CCTTGTATTTTTATTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
196 CCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
18365230 GACCATTTGAAAAAAGTATCCCCATTTCAGACATTTTAATGGCTACTCGCAGCAAACCTGTAAAA
261 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
18365295 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
326 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
18365360 GGACCAAGTACCAGCACCCATCGCGCATCATGTGCGCACACCCCCCGGCCCCTCCGATCACCGGA
391 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGA
18365425 ACCCCAATGCCG
456 ACCCCAATGCCG
18365437 CATTAGCCCT
Statistics
Matches: 1994, Mismatches: 231, Indels: 106
0.86 0.10 0.05
Matches are distributed among these distances:
891 38 0.02
892 156 0.08
893 39 0.02
894 3 0.00
895 347 0.17
896 107 0.05
897 1 0.00
898 1 0.00
899 1 0.00
900 6 0.00
901 2 0.00
902 1 0.00
903 255 0.13
904 371 0.19
905 160 0.08
906 3 0.00
909 2 0.00
910 1 0.00
911 1 0.00
916 2 0.00
917 106 0.05
918 348 0.17
919 38 0.02
920 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (894 bp):
ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTT
TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGA
ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
GCGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGTCCCAACCCTAAGTCTGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATCGGGTCC
CCCTCTACATGCTGCCGATCCTGCTCCGCACCCTTCAGTCCAGTCTGATCTTAGACTAGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCACTACGCCGACCAGAGAGA
CGGGATGCGCAAGCCATAGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
Found at i:18365997 original size:26 final size:26
Alignment explanation
Indices: 18365968--18366072 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
18365958 CCAGTCCGAC
18365968 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18365994 CTTAGACTAGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18366020 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18366046 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18366072 C
1 C
18366073 CTAAGTCAAC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.