Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20765110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 90000 characters in sequence are not A, C, G, or T
File 99 of 117
Found at i:18486445 original size:1 final size:1
Alignment explanation
Indices: 18486439--18486481 Score: 50
Period size: 1 Copynumber: 43.0 Consensus size: 1
18486429 AGCTTTGGTG
* * * *
18486439 AAAAAAAAAAAAAACAAAAAAAAGACAAAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
18486482 TGACAATGTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.91, C:0.07, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:18486459 original size:11 final size:11
Alignment explanation
Indices: 18486439--18486481 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
18486429 AGCTTTGGTG
18486439 AAAA-AAAAAA
1 AAAACAAAAAA
18486449 AAAACAAAAAA
1 AAAACAAAAAA
*
18486460 AAGACAAAAAA
1 AAAACAAAAAA
18486471 AAAACAAAAAA
1 AAAACAAAAAA
18486482 TGACAATGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
10 4 0.13
11 26 0.87
ACGTcount: A:0.91, C:0.07, G:0.02, T:0.00
Consensus pattern (11 bp):
AAAACAAAAAA
Found at i:18486720 original size:21 final size:21
Alignment explanation
Indices: 18486696--18486821 Score: 75
Period size: 21 Copynumber: 5.8 Consensus size: 21
18486686 TGTATTTTAT
18486696 TATTTATTATTATTATATGTA
1 TATTTATTATTATTATATGTA
*
18486717 TATTT-TTACTTATT-TATTTA
1 TATTTATTA-TTATTATATGTA
* *
18486737 TTTATTTATT-TTGTTAATATTTA
1 --TATTTATTATTATT-ATATGTA
*
18486760 TATGTATT-TTATTTATATAGTTCTA
1 TATTTATTATTA-TTATAT-G---TA
18486785 TATTTATTATATATTATAAT-T-
1 TATTTATTAT-TATTAT-ATGTA
18486806 TATTTATTATTATTAT
1 TATTTATTATTATTAT
18486822 TATTTTTTAT
Statistics
Matches: 85, Mismatches: 6, Indels: 29
0.71 0.05 0.24
Matches are distributed among these distances:
20 14 0.16
21 37 0.44
22 8 0.09
23 8 0.09
25 9 0.11
26 5 0.06
27 4 0.05
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (21 bp):
TATTTATTATTATTATATGTA
Found at i:18486735 original size:4 final size:4
Alignment explanation
Indices: 18486682--18486836 Score: 57
Period size: 4 Copynumber: 39.8 Consensus size: 4
18486672 TCTTTTGTAT
* * *
18486682 TTTA TGTA TTT- TATTA TTTA -TTA -TTA TTATA TGTA TATT- TTTA CTTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA
*
18486729 TTTA TTTA TTTA TTTA TTT- TGTTA -ATA TTTA TATGTA TTTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA T-T-TA -TTTA TTTA
* * * * *
18486775 TATA GTTC TATA TTTA TTATA TATTA -TAA TTTA TTTA -TTA -TTA -TTA
1 TTTA TTTA TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA
18486821 -TTA TTT- TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTT
18486837 TTCTTGTAAT
Statistics
Matches: 115, Mismatches: 18, Indels: 36
0.68 0.11 0.21
Matches are distributed among these distances:
3 32 0.28
4 65 0.57
5 13 0.11
6 4 0.03
7 1 0.01
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:18486806 original size:17 final size:18
Alignment explanation
Indices: 18486693--18486822 Score: 59
Period size: 17 Copynumber: 7.6 Consensus size: 18
18486683 TTATGTATTT
*
18486693 TATTATTTA-TTATTATTA
1 TATTATATATTTATTA-TA
* *
18486711 TATGTATATTTTTACTTATT
1 TAT-TATATATTTA-TTATA
*
18486731 TATTTATTTATTTATT-T-
1 TA-TTATATATTTATTATA
* *
18486748 TGTTA-ATATTTA-TATG
1 TATTATATATTTATTATA
18486764 TATT-T-TATTTA-TATA
1 TATTATATATTTATTATA
* *
18486779 -GTTCTATATTTATTATA
1 TATTATATATTTATTATA
18486796 TATTATA-ATTTATT-TA
1 TATTATATATTTATTATA
18486812 TTATTAT-TATT
1 -TATTATATATT
18486823 ATTTTTTATT
Statistics
Matches: 87, Mismatches: 12, Indels: 27
0.69 0.10 0.21
Matches are distributed among these distances:
14 3 0.03
15 17 0.20
16 14 0.16
17 21 0.24
18 8 0.09
19 6 0.07
20 14 0.16
21 4 0.05
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (18 bp):
TATTATATATTTATTATA
Found at i:18486826 original size:16 final size:16
Alignment explanation
Indices: 18486682--18486836 Score: 88
Period size: 15 Copynumber: 10.2 Consensus size: 16
18486672 TCTTTTGTAT
18486682 TTTATGTATT-TTATTA
1 TTTAT-TATTATTATTA
18486698 TTTATTATTATTA-TA
1 TTTATTATTATTATTA
* *
18486713 TGTA-TATTTTTACTTA
1 TTTATTATTATTA-TTA
18486729 TTTA-T-TTA-T-TTA
1 TTTATTATTATTATTA
* *
18486741 TTTATT-TTGTTAATA
1 TTTATTATTATTATTA
18486756 TTTA-TATGTATT-TTA
1 TTTATTAT-TATTATTA
*
18486771 TTTA-TA-TAGTTCTATA
1 TTTATTATTA-TTAT-TA
*
18486787 TTTATTATATATTATAA
1 TTTATTAT-TATTATTA
18486804 TTTATTTATTATTATTA
1 TTTA-TTATTATTATTA
18486821 -TTATT-TT-TTATTA
1 TTTATTATTATTATTA
18486834 TTT
1 TTT
18486837 TTCTTGTAAT
Statistics
Matches: 112, Mismatches: 11, Indels: 34
0.71 0.07 0.22
Matches are distributed among these distances:
12 7 0.06
13 11 0.10
14 16 0.14
15 29 0.26
16 26 0.23
17 14 0.12
18 7 0.06
19 2 0.02
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.67
Consensus pattern (16 bp):
TTTATTATTATTATTA
Found at i:18486826 original size:58 final size:56
Alignment explanation
Indices: 18486690--18486827 Score: 129
Period size: 58 Copynumber: 2.4 Consensus size: 56
18486680 ATTTTATGTA
* ** *
18486690 TTTTATTATTTATTATTATTATATGTATATTTTTACTTATTTATTTATTTATTTATT
1 TTTTATTA-TTATTATTATTTTATGTATATAGTTACTTATTTATTTATTTATTAATT
* *
18486747 TTGTTAATATT-TATATGTATTTTATTTATATAGTT-CTATATTTATTATATATTA-TAATT
1 TT-TTATTATTAT-TAT-TATTTTATGTATATAGTTACT-TATTTATT-TAT-TTATTAATT
18486806 TATTTATTATTATTATTATTTT
1 T-TTTATTATTATTATTATTTT
18486828 TTATTATTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
56 1 0.02
57 9 0.14
58 33 0.50
59 18 0.27
60 5 0.08
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (56 bp):
TTTTATTATTATTATTATTTTATGTATATAGTTACTTATTTATTTATTTATTAATT
Found at i:18486837 original size:10 final size:10
Alignment explanation
Indices: 18486787--18486838 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
18486777 TAGTTCTATA
*
18486787 TTTATTATAT
1 TTTATTATTT
* *
18486797 ATTATAATTT
1 TTTATTATTT
18486807 ATTTATTA-TT
1 -TTTATTATTT
*
18486817 ATTATTATTT
1 TTTATTATTT
18486827 TTTATTATTT
1 TTTATTATTT
18486837 TT
1 TT
18486839 CTTGTAATAT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
9 6 0.18
10 22 0.67
11 5 0.15
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTATTATTT
Found at i:18487442 original size:11 final size:11
Alignment explanation
Indices: 18487406--18487446 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
18487396 ATCCCAGAAA
*
18487406 CCGGTGACCTT
1 CCGGTGAACTT
**
18487417 CCGACGAACTT
1 CCGGTGAACTT
18487428 CCGGTGAACTT
1 CCGGTGAACTT
18487439 CCGGTGAA
1 CCGGTGAA
18487447 GAAACCCAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.22
Consensus pattern (11 bp):
CCGGTGAACTT
Found at i:18487484 original size:20 final size:20
Alignment explanation
Indices: 18487448--18487485 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
18487438 TCCGGTGAAG
* *
18487448 AAACCCAGATTCTAGTGACA
1 AAACCCAGAATCCAGTGACA
18487468 AAACCCAGAATCCAGTGA
1 AAACCCAGAATCCAGTGA
18487486 ATCTTCAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.26, G:0.16, T:0.16
Consensus pattern (20 bp):
AAACCCAGAATCCAGTGACA
Found at i:18487917 original size:17 final size:16
Alignment explanation
Indices: 18487883--18487922 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
18487873 TTAGATTAGG
*
18487883 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
18487899 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
18487916 TTTATTT
1 TTTATTT
18487923 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:18487929 original size:17 final size:17
Alignment explanation
Indices: 18487909--18487956 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
18487899 TTTATCTTAA
18487909 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
18487925 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
18487943 TTTCTATTTTTATT
1 TTT-TATTTTTATT
18487957 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:18487956 original size:14 final size:14
Alignment explanation
Indices: 18487909--18487966 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
18487899 TTTATCTTAA
18487909 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
18487921 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
18487935 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
18487950 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
18487964 TTT
1 TTT
18487967 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:18487971 original size:17 final size:17
Alignment explanation
Indices: 18487932--18487971 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
18487922 TTTGTTTTAC
*
18487932 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
18487949 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
18487963 TTTTCTTTA
1 TTTTCTTTA
18487972 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:18488070 original size:58 final size:57
Alignment explanation
Indices: 18487974--18488263 Score: 388
Period size: 56 Copynumber: 5.0 Consensus size: 57
18487964 TTTCTTTAAA
* *
18487974 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTC-AAAAAAGTATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCT
**
18488035 TAAAAATAAATTTTCAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAGTATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
** * *
18488093 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT-CT
1 TAAAAAT-AAATTTTC-AAAAAAGTATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
* *
18488152 TAAAAATAAATTTT-AAAAAAATATTTTTTGGGAAAAGTTAAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAGTA-TTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
18488209 TAAAAATAAA-TTTCAAAAAAGTATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAGTATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
18488264 CTACACAAGA
Statistics
Matches: 207, Mismatches: 16, Indels: 17
0.86 0.07 0.07
Matches are distributed among these distances:
56 66 0.32
57 27 0.13
58 49 0.24
59 21 0.10
60 37 0.18
61 7 0.03
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (57 bp):
TAAAAATAAATTTTCAAAAAAGTATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:18490207 original size:900 final size:896
Alignment explanation
Indices: 18488733--18501474 Score: 10193
Period size: 901 Copynumber: 14.2 Consensus size: 896
18488723 TATGACACTA
* * * **
18488733 CCGGACAGGTTCTTCGGAGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGAAACCAGCA
1 CCGGTCAGGTTC-TCCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * *
18488798 CATGCCCGATCCTAGCATGTGCTACCGCAACCCTC-G----GTCCGA-CTTAGACTGGGAATGAA
65 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAA
* * *
18488857 CTCCATATGCTTAGA-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGG
130 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
** * * * *
18488921 GCAATCAGTCGACCAGAGGGGCGGGACGCACAAGCTAGGGATCGG-TCGGGTCCCCCTCTGCGTG
195 GCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCGA-GGATCGGCTCGGGTCCCCCTCTGCGTG
** * * *
18488985 CTATCGATCATGCT-GTCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
259 CTGCCGATCCTGCTACT-GCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * ** * * * * *
18489049 GCCAAAGCCAATCGACAAAACGAGGGGGCGGGTGGGCGGGCGGGCACTATGTCGGCCAGAGAGAC
323 GCCTAAGCCAACCGATGAAACGA----ACGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGAC
* * *
18489114 GGGACGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
384 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
18489179 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
449 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
** *
18489244 CATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTT
514 CATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
* * *
18489309 TAGAATTTTTTCGGAAGGAGTTTGGCCCCAAACTTGGTAGGCGTGATCATTGTATTTTTTTTGGC
579 TA-AATTTTTTCGGAAGGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
18489374 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAGGTG
643 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
18489439 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAG
708 TCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
18489504 GGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGACCAATACAAGGGCCAAGTACCAGCACC
773 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
18489569 CATCGCATATCATGTGCGCACACCCCCGCGGGCCCCCTGATCATCGAAACCCCAAT-CCTG
838 CATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCC-G
* * * * *
18489629 CCAGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGTA
1 CCGGTCAGGTTCTCCG-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* ** * *
18489694 CATGCCCGGGCATAGCATGTGCTGCCGTAACCTTCGGTCCAGTCCGATCTTAGACTGGGAATGAA
65 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAA
* * * *
18489759 CTCCGTACGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAAGGAGCGTGCGG
130 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* ** * *
18489824 GTGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGAGGATCGGCTCGGGTCCTCCTCTGCATG
195 GCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG-CGAGGATCGGCTCGGGTCCCCCTCTGCGTG
* * *
18489889 CTGCCAATCCTGCTACTGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
259 CTGCCGATCCTGCTACTGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
18489954 CCTAAGCCAACCGATGAAACGAACGGGCGGGCGAGCGGGCACTACGTCGGCCAGAGAGACGAGAT
324 CCTAAGCCAACCGATGAAACGAACGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * * *
18490019 GCGCAAGTCGTGGATCGGTAAGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCCGCATGCCA
389 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
18490084 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGG
454 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
18490149 CAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTCTGCGGTTTGGGATTTTTTTAAA
519 CAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGA-TTTTTTAAA
*
18490214 TTTTTTTGGAAGGAGTCTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
583 TTTTTTCGGAAGGAGT-TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
18490279 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
647 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
18490344 CATTTAAGACACTTTAAAGGCTACTGGTC-GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
712 CATTTTAGACACTTTAATGGCTACTGG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* ** * *
18490408 GTGTTAGTTCTTAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTAGCAGCACCCAT
776 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* *
18490473 CACACATCATGTGCGCACACAGCCCCC--ACCCCCCGATCG-CTGGAACCCCAATGCCG
841 CGCACATCATGTGCGCACAC--CCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCG
* * * * * * *
18490529 CCTGTCAGGATCTCCGGTGAAGCTCCAACGATGGTG-CCCTAGTGAAGAAAAATGCGGCACCAGC
1 CCGGTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGC
**** * * *
18490593 ACACATACGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
64 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGA
* *
18490658 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCG
129 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * * *
18490723 GGCGCTCAGCCAGTCGGAGGGGCGGGATACGCAAGCCGGGGATCGGCT-GGTTCCCCCTCTGCCT
194 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG-CGAGGATCGGCTCGGGTCCCCCTCTGCGT
* * **
18490787 GCTACTGATCCTGCTA-T-CATAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
258 GCTGCCGATCCTGCTACTGC--AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
18490850 ATGCCTAAGCCAACCGATGAAATG-A---GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
321 ATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGG
* *
18490911 GATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATG
386 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
18490976 TCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
451 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
18491041 TTGCAAGACGACTCATTTTCTATTTTTCATGA-TTTTGAAAACTTTTTGCGGTTCGAGATTTTTT
516 TGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG-AAACTTTTTGCGGTTCGGGATTTTTT
*
18491105 AAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCA
580 AAATTTTTTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
18491169 TGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
644 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
18491234 CCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGG
709 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * *
18491299 GGGTGTGTGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAACACCC
774 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
18491364 ATCGCACATCAAGTGCGCGCACACCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCG
839 ATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * *
18491423 TCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGGCGAAGAAAAATGCTGCACCAGCA
1 CCGGTCAGGTTCTCCG-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * * * *
18491488 TATGCCCGAGCCCAGCATGTGTTGTCACAACCCTCGGT-CTGATCCGATCTTAGACTGAGAATGA
65 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGA
* * * * *
18491552 ACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCGACCCACGAAACAAGTGTTCG
129 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * *
18491617 GGCGCTCAACCGGCTAGAGGGGCAGGATGCACAAGCCAGGCATCGAC-CGGGTCCCCCTCTGTGT
194 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCGAGG-ATCGGCTCGGGTCCCCCTCTGCGT
* * * * * ** *
18491681 GCTGTCGATGCTGCTGCTGTAACGCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
258 GCTGCCGATCCTGCTACTGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
18491746 GCCTTAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGTCGGGCAGAGAGACGGGA
323 GCCTAAGCCAACCGATGAAACGAACGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * *
18491811 TACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTTTGCTTGCC
388 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
18491876 AATGCCATTTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
453 AATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* ** *
18491941 GGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAA
517 GGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-A
** * *
18492006 AATTTTTTCGGAAGGCCTTTTGGCTCCAAACTTGGTAGACGCGATCCTTGTATTTTTGTTGGCAT
581 AATTTTTTCGGAAGG-AGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
18492071 GCAC-AAAAAATTCAGGTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
645 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
18492135 CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
710 CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
18492200 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCA
775 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * *
18492265 TCACACATCATGTGCGAACAACCCCCCCGGCCCCCCCGATCGCCGTAACCCCAAAGTCG
840 TCGCACATCATGTGCGCAC-A-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * *
18492324 CCGGTCAGGTTCAAT-GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGACACCAGC
1 CCGGTCAGGTTC--TCCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* ** * *
18492388 ACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGA
64 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGA
*
18492453 ACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
129 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * * *
18492518 GGTGCTCAGCTGGCCAGAGGGGTGGGATGCGCAAGCCCG-GGATCAG-TCGGGTCCCACTTTGTG
194 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG--CGAGGATCGGCTCGGGTCCCCCTCTGCG
* * * * * * ** *
18492581 TGCTGCCAATCCTGCTACCGCAACCCT-TGATCTGATCCAATCTTGGACTGCAAATGAACTCTGT
257 TGCTGCCGATCCTGCTACTGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
** * *
18492645 ATGCCTAAGCCAACTAATGAAACG-A---GCGGGC-A-C---TA-TA--CCGGCCAGAGAGATGG
321 ATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGG
*
18492698 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATG
386 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
** *
18492763 AAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCA
451 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
*
18492828 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTG-GGTTCGGGATTTTTT
516 TGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC-TTTTTGCGGTTCGGGATTTTTT
* *** * *
18492892 AAAATTTTTTTGGAATTTGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGAC
580 -AAATTTTTTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * * * * *
18492957 ATGCATAAAAAAATTTAACAAAAAACTCGAAGTGTACAAGATATTGTGGCCATTCGAAAAAAGTG
643 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
18493022 TCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCGTTAAG
708 TCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
18493087 GGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT------ACC
773 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
18493146 C--C-C-CA--A--T------------C-G-----CCGA-------AACGCTAATGTCG
838 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * *
18493172 CTGGTTAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
1 CCGGTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* *
18493237 CATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTTGGTCAGGTCCGATCTTAGACTGGGAATGAA
65 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCC----TC--G---G-TC-----C-----A-G--
* *
18493302 CTCCGTATGTTTAGACTGGGAGTGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
107 -TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * ** *
18493367 AGTCAACCCACAAAACAAGCGTGCGGGCGCTCAAGCCGGCTTGAGGGGTGGGATGCACAAGCTG-
169 AGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AGCCGGCCAGAGGGGCGGGATGCACAAGC-GA
* * * * *
18493431 GGAATCGGC-CGGGTCCCCCTCTACGTGCTGTCGATCCTGCTCCTGCAACCCTCGGTCTGGTCTG
232 GG-ATCGGCTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCAGTCTGGTCCG
* * ** *
18493495 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGGCAACCGACAAAACGAGCGGGC-GG-G-G-G
296 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGAGCG
* * *
18493556 GGCACTACGCCGACCATAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTT
361 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
**
18493621 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
426 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
18493686 CCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-TTTTTCATGATTTTTCAA
491 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
* * * ** *
18493750 ACTTTTTGTGGTTTGGGATTTTTTTAAATTTTTTCGAAAGGCTTTTTCGCCCCAAACTTGGTAGA
556 ACTTTTTGCGGTTCGGGA-TTTTTTAAATTTTTTCGGAAGG-AGTTTGGCCCCAAACTTGGTAGA
* * *
18493815 CGTGATCCTTGTATTTTTGTTGGCCTGCATAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGA
619 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
18493880 TTTTATGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
684 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
*
18493945 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
749 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
18494010 ATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGCGCGCACACCCCTTCGGCCCCCCCGAT
814 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCGAT
*
18494075 CGCCGGAACCCCAATGCCG
878 CGTCGGAACCCCAATGCCG
* * * * **
18494094 TCGGTCAGGTTC-CC-C---G----G-CGATGGTGCCTCAATGAAGAAAAATGCAACACCAGCAC
1 CCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * *
18494149 ATGCCCAAGCCCAGCATTTGCTGCTGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAAC
66 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC
* *
18494214 TCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
131 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * ** *
18494279 CGCTCAGCCGGCCAGAGGAGCGGGATACACAAACCGGGGATCGAC-AAGGTCCCCCTCTGCATGC
196 CGCTCAGCCGGCCAGAGGGGCGGGATGCAC-AAGCGAGGATCGGCTCGGGTCCCCCTCTGCGTGC
* * * * * *
18494343 TGCCGATCCTGCT-GTCGCGACGCCT-GGT-TCGGTCAGATCTTAGACTGGGAATGAACTTCGCA
260 TGCCGATCCTGCTACT-GCAAC-CCTCAGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
18494405 TGCCTAAGCCAACCGATGAAACGAACGGACGGGCGGGCAGGCGAGCGCTACGCCGGCCAGAGAGA
322 TGCCTAAGCCAACCGATGAAACGAACGGGCGGGC--G-A-GCGGGCACTACGCCGGCCAGAGAGA
* *
18494470 CGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTGC
383 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* ** * * *
18494535 GA-GCCAATACCATTTTTACAGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTTAAAT
448 -ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
**
18494599 TTCATGGCAAGACGACTCA--TT-T-TTTTTCACGATTTTTG----TTTTTGTTGTTCGGGATTT
512 TTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTT
* * ** *
18494656 TTTAAAATTTTCTCGAAAGGAGTTTTGGCCCCAGTCTTGGTAGATGTGATCCTTGTATTTTTGTT
577 TTT-AAATTTTTTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
18494721 GGCATGCAGAAAAGAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
640 GGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
18494786 AGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATATGAAATGCTCTT
704 AGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
18494851 TAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAG
769 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
18494916 CACCCATCG--C-TCATGTTCGCAC-CCCCCCGG--CCTCCGATTGTCAGAA-CTCAATGCCG
834 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * * * **
18494972 -AGCGTC-GGTTCTCCTGCGTTGCTCCGACG-GGGTAGCCATCGCG-TGAGAGAGACAA-GCATA
1 CCG-GTCAGGTTCTCC-GCGATGCTCCGACGATGGT-GCC--C-CGACGA-AGA-AAAATGC-GG
* * * * * *
18495032 CACCATG--TATGCTGCAGAGCCTAGCATGTGTTGTCGCCA-CC-C--T-C-GTCCGATC-----
57 CACCA-GCACATGC--CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGA
* * * **
18495084 C---G--T-AACT-CATGTGCTTAGATTGGGAATGAAACTCCGTATTTCTAAGTCAACCCACG-A
119 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATG-AACTCCGTATGCCTAAGTCAACCCACGAA
18495141 AC-AGCGTG-GGGCGGCCTCAGGCC-GCCAGAGGGGC-GGATGC-CGAAGTCG-GGATCCGG-T-
183 ACGAGCGTGCGGGC-G-CTCA-GCCGGCCAGAGGGGCGGGATGCAC-AAG-CGAGGAT-CGGCTC
* * * * * *
18495198 GGGTCCCCTTCTTGCATCCTG-CGAT-CTG-TACCG-AA-CCT-GGT-TGGTCTGAT-TTAGACT
242 GGGTCCCCCTC-TGCGTGCTGCCGATCCTGCTACTGCAACCCTCAGTCTGGTCCGATCTTAGACT
* * * *
18495255 GGGAATGGAACT-TGT-TG-CTAAGCCAA-CGA-CAAATGAGCGGGGGCGGGCGACGCGGGTGTT
306 GGGAAT-GAACTCCGTATGCCTAAGCCAACCGATGAAACGAAC--GGGCGGGCGA-GC-GG-G--
* ** * * * * * * *
18495315 TA-TACGCC-GCCAGAGAGACTGTACATG-G-TA--C-TGGCTCAGACA--CT-TTA-ATGGCTA
363 CACTACGCCGGCCAGAGAGAC-G-GGATGCGCAAGCCGTGGATC-GATAGGGTGGTAGGTGGGT-
* * * * * ** * **** * * * ** *
18495369 CT-GGCAGCAAACCTGTAAAATCTC-AAATGCTCATTAAGGGGGTGTGA-GTTCTTG-AGGTTTG
424 TTAGGCA-C--ATCT-TCATATTTCTGCATGC-CA--ATGCCATTTTTATG-GCTTGTA-AATTC
* * * * * * *** * * * * *
18495430 ATGAGGGATAGGGGGCCAATATAAGGAC--CAAGT-ACCAGCACCCATCGCACATCATGTGCGCA
480 AT-A--CA-A-TGGTCC-CT-TAA-GCCTTCACGTGA--AG-TTTCATGGCA-A-GACG-ACTCA
** ******* * ** * ** ** * ** **** *
18495492 TACCCCCTCCGGCCCCCCCGATTGTCGGAACACCAATGCTGCCGG-TCATG-TTCTCCAGCGATG
531 T----TTTCTATTTTTCACGATT-TTTGAA-A-C-TTTTTG-CGGTTCGGGATTTTTTAAATTTT
* * * * ** * *** * ** ** * *
18495555 CTCCG-ATGA--TGGTGCCCC---GGT-GAAGA-AAAATAC--G-A---CAGCAGCACATGCCCG
587 TTCGGAAGGAGTTTG-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG-GCATGCAC-
** ** * * ** * * * * ** **
18495606 AGCCCAGCATGTGCTGCTGTAACCCTTG--GTCCG-ATC-CGATCTT-AGA-C-TGGGAATGAA-
649 A--AAAAAAT-T-CAGCT-AAAAACTCGAAGT--GTA-CAAGATTTTGTGACCATTTGAAAAAAG
* ** * ** * * * ** * ** * * **
18495663 -CTCCGTATGCTTAG--ACTGGGAAT-G-AACT--CCGTATGCCTAAGTCAACCCACGAAACGAG
706 TGTCCCCAT-TTTAGACACT-TTAATGGCTACTGGCAGCAAACCT--GTAAAATCTC-AAATGCT
* * * * * *** * * **
18495721 C---ATGCGGGCGCTCA--AC-C--GGCCAGA--AGGG-T-GGGATG-CAAAAGTCAAGGATC--
766 CTTTAAGGGGGTG-TGAGTTCTCGAGGTTTGATGAGGGATAGGG-GGCCAATA-T-AAGGGCCAA
* * * * ** *** *
18495771 G-ACCAGGACCC-TCTGTACGTGC-TGCTGATCCTGCTCCACAACCCTTGGTCCAGTCTGATCTT
827 GTACCAGCACCCATC-GCACAT-CATG-TG---C-G---CACACCCCCCGG-CCCCCCCGATC--
* *
18495833 AGACTGGGAATGAACTCCGAATGCGAATCG
879 -G--T-CG---GAAC-CCCAATGC----CG
* * * ** * * * ** * * * * *****
18495863 ACGATAGGGTGGTAGGTGGGTTTAGGC-ATATCTTC-A-TATTTCTGCATGCCAATGCCATTTTT
1 -C----CGGT--CAGGT---TCTCCGCGAT-GCTCCGACGA-TGGTGC--CCCGACG-AAGAAAA
* * * * * * * * **
18495925 ATGGCTTGTA-AATTCGTACAATGGCCCCTAAAGCCTTCACGTGAAGTTTCATG--GCAA-GAT-
51 AT-GC-GGCACCA---GCAC-AT-G-CCC--GAGCC--CA-G-CATG-TGC-TGCCGCAACCCTC
* *** * * * * *** * * * * *
18495985 GACTCGTTTTCTATTTTTCAGGATTTTCAA--AACT--TTTTGC--AG-TTCGGGATTTTTTAAA
100 G-GTCCAGTCCGA-TCTT-A-GACTGGGAATGAACTCCGTATGCTTAGACT-GGGA----ATGAA
* * * * ** * ****** *** * * * * * **** **** **
18496043 AT--TTTTTCAGAAG-GATTTTTGGCCGCAAGCTTG-GATGACG-TGATCCTTTTATCTTTGTTG
156 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG--GGCGCTCAGCCGGCCA-GAGGGGCG
* * ** * * ** **** * * * *
18496103 GCATGCACAA--AAACATTCAGCTAAGAACTCGAAGTGTACAAGATTTTG-TGACC-AT-TTGAA
218 GGATGCACAAGCGAGGA-TCGGCT-CG-GGTCCCCCTCTGC--G----TGCTG-CCGATCCTG-C
* ** *** * * * * ** ** * * **
18496163 AAAAGTGTCCC-CATTTTAGACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGC
272 TACTGCAACCCTCAGTCTGGTC-CGATCTTAG--ACTGG--G--AA--TG--AACTC-CGTATGC
***** ** ** * ** * * ****
18496227 TCTTTAAG-GGGGTG-TGAGTTCTCGAGGTTTGAGGAGGGATAGGGGGCCAATATAAGGGCCAAG
325 -C--TAAGCCAACCGATGA---AACGA---ACG-GGCGGGCGAGCGGG-CACTACGCCGGCC-AG
* ** * * * ** * ** *
18496290 TACCAGCAC-CCAT-CGCACATCATGTGCGTACACCCCCCGACCGGCTAGAG-AGACGGG-AT-G
378 -A-GAG-ACGGGATGCGCA-AGC-CGTG-G---A----TCGATAGGGT-G-GTAGGTGGGTTTAG
* * * ** * *** * * ** *
18496350 CGCA-AGCCGTGGATCGGTAGGGTGGTAG-GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCC
428 -GCACA-TC-T---TC-ATA--TTTCT-GCAT--GCCAATGC-CAT-TT-TTATGGCT-TGT--A
* *** * * * *
18496413 AATGCCATTTTTATGG--CCTGTAAATTCAACCAATCGTC-CCTTAAGCCTTCACGTGAAGTTTC
475 AAT-TCA-TACAATGGTCCCT-T--A---AGCC--T--TCACGTGAAG-TTTCA--TG--G---C
* * * ** ** * * * * *
18496475 ATGGCAAGACA-ACTCATTTTTTATTTTTCATGATTTTTGAAACATTTTACGGTTTGGGATTTTT
520 AAGACGACTCATTTTC-TAT-----TTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
* *
18496539 TAAACTTTTTTCGGAAGGATTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
579 TAAA-TTTTTTCGGAAGGA-GTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
18496604 CATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
642 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
18496669 GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAGCTTGTAAAATCTCAAATGCTCTTTA
707 GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA-CCTGTAAAATCTCAAATGCTCTTTA
* *
18496734 AGGGGGTGTGAGTTCTCGAGGTTTGAGGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCA
771 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * *
18496799 CCCATCACACATCATGTGCGTACACCCCCCCG-CCCCCCGATCGTCGGAACCCCAATGCCA
836 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
*
18496859 CCGGTCAGGTTCTCCGACGATGCTCCGACGACGCTCCGACGACGGTGCCCCGACGAAGAAAAATA
1 CCGGTCAGGTTCTCCG-CGATGCTCCGACGA---T--------GGTGCCCCGACGAAGAAAAATG
** *
18496924 CGGCACCAGCACATGGTCGATCCCAGCATGTGCTGCCGCAACCCTCGGTCC--T--G-TC-----
54 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGA
*
18496979 C---G-AT---CT---TA--C----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
119 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * ** * * *
18497028 CGAGCGTGCGGGCGCTCAGCCGACCAAAGAGGCATGATGCACAAGCCGGGGATCGAC-CAGGTCC
184 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG-CGAGGATCGGCTCGGGTCC
* ** * * *
18497092 CCCTCTGTGTGCTGTTGATCCTGCTACCGTAACCCTC-GCTCTGGTCTGATCTTAGACTGGGAAT
248 CCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAAT
* * * * * *
18497156 GAACTCCGTATGCCTAAGCCAACCGATTAAACGAGTGGGCAGGCGGGCGGGTGGGCAATACGCCG
312 GAACTCCGTATGCCTAAGCCAACCGATGAAACGA----ACGGGCGGGCGAGCGGGCACTACGCCG
* * *
18497221 GCCTGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTC
373 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
18497286 ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTC
438 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * ** *
18497351 ACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGT
503 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
* * * * *
18497416 TCAGGATTTTTTAAAATTTTTTCAGAAAGAGAATTGGCCCCCAAACTTGGTAGAAGTGATCCTTG
568 TCGGGATTTTTT-AAATTTTTTCGGAAGGAG-TTTGG-CCCCAAACTTGGTAGACGTGATCCTTG
* * * *
18497481 TATATTTGTTGGCGTGCATAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
630 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
18497546 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
695 TTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
18497611 AATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
760 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
18497676 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCCGGCCCCCCCGATCGCCGGAACC
825 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCCCCCCCGATCGTCGGAACC
18497741 CCAATGCCG
888 CCAATGCCG
* * * * * * *
18497750 CCGGTTAGGTTTTTCGACGATCCTCC-AGCAATGGTGCCCCGACGAAGAAAAATGCAGCACCAAC
1 CCGGTCAGGTTCTCCG-CGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * * * ** **
18497814 ACATGCCCCAGTCCAGCATGTGCTGCTGTAACCCTTGGTCTGGTTTGATCTTAGACTGGGAATGA
64 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGA
* * * *
18497879 ACTCCGTATGCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAACGTGCA
129 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * *
18497944 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGATGATC-GATCGGGT-CCCCTCTGCGT
194 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG-CGAGGATCGGCTCGGGTCCCCCTCTGCGT
* * * * * * *
18498007 GATGTCAAT-C--CTACTGTCAAAACCCTCGGTTTGATCCGATCTTAGACTGGGAATAAACTCCG
258 GCTGCCGATCCTGCTACTG-C--AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * *
18498069 TATGCCTAAGCCAACTGATGAAACCAGCGGGCGGGCGAGCGGGCGGGCACTACGCTGGCCAGAGA
320 TATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGA----GCGGGCACTACGCCGGCCAGAGA
18498134 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
381 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
18498199 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCGTTCACGTGAAG
446 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * * *
18498264 TTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTTAAACCTTTTACGGTTCGAGATT
511 TTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGA-T
* *
18498329 TTTTTAAATTCTTTT-GGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTT
575 TTTTTAAATT-TTTTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
18498393 TTGGCATGCACAAAAATATTCAGCTAAAAATTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAA
638 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
18498458 AAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
703 AAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
18498523 TTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCA
768 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
*
18498588 GCACCCATCGCACATCATGTGCGCACACCCCCCTCGG-CCCCCCGATCG-CTGGAACCTCAATGC
833 GCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGTC-GGAACCCCAATGC
18498651 CG
895 CG
* * * **
18498653 CCGATCAGGTTCTCCGACGATGCTCCTG-TGATGGTGCCCCAACGAAGAAAAATATGGCACCAGC
1 CCGGTCAGGTTCTCCG-CGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * * * * *
18498717 ACATGCCCAAGCCCAGCATGTGCTACTGCAACCCTCGGTCTAGTCTGATGTTAGACTAGGAATGA
64 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGA
** * * * * * *
18498782 GGTCTGTATGCTTAGACTGGGAATGAAGTCCGTATGCCTAAGGCAACTCACGAAATGAGCGTGGG
129 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * * * *
18498847 GGTGCTCAACCGGCCAGGGGGGCGGGATGCGCAAGCCGAGGATCGG-TCAGGTCCCTCTCCGCAT
194 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG-CGAGGATCGGCTCGGGTCCCCCTCTGCGT
* ** * *
18498911 GCTGCCGATCCTACTACCACAACCCTC-GAT-GGGTCCAATCTTAGACTGGGAATGAACTCCGTA
258 GCTGCCGATCCTGCTACTGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * * *
18498974 TACCTAAGCTAACCAACGAAACGAACGGGCGGGC-AGGTGGGCACTAGGCCGGCCAGAGAGACGG
322 TGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGA-GCGGGCACTACGCCGGCCAGAGAGACGG
18499038 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
386 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
18499103 CCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCA
451 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * ** * *
18499168 TGGCAAGACGACTCGTTTTTTATTTTTC-CTGATTTTCAAAACTTTTTGCGGTTTGAGATTTTTT
516 TGGCAAGACGACTCATTTTCTATTTTTCAC-GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT
* *
18499232 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTTT
580 -AAATTTTTTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTGTTG
* *
18499297 GCATGCACAGAAAAATTCAGCTAAAAA-TGCGAAGTGTACATGATTTTGTGACCATTTGAAAAAA
641 GCATGCACAAAAAAATTCAGCTAAAAACT-CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
18499361 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
705 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
18499426 AAGGGGGTTTGAGTTCTCAAGGTTTGATGAGGGACT--GGGGCCAATATAAGGGCCAAGTACCAG
770 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TAGGGGGCCAATATAAGGGCCAAGTACCAG
* **
18499489 CACCCATCGCACATCATGTGCGCACA-CCCCCGG-CCCCCAGATCACCGGAACCCCAATGCCG
834 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* ** * **
18499550 CCGGTCAGGTTCTCCGACGATGGTCCGGTGATGGTGACCCGGTGAAGAAAAATGCGGCACCAGCA
1 CCGGTCAGGTTCTCCG-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * *
18499615 CATGCCTGAGCCCAGCATGTGCTGCCGCAACACTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
65 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAA
*
18499680 CTCCGTA----T-GA----G--T--A------A-G-C-----CAACCCACGAAACGAGCGTGCGA
130 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * *
18499719 GCGTTCAGCCGGCCAGAGGGGCGGCATGCGCAAGCCAGGGATC-GATCGAGTCCCCCTCTACGTG
195 GCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCGA-GGATCGGCTCGGGTCCCCCTCTGCGTG
* * * * *
18499783 CTGTCAATCCTGCTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
259 CTGCCGATCCTGCTACTGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
18499848 CCTAAGCTAACCGATGAAATGAGCGGACGGACGGGCGGGTGGGCACTACGTCGACCAGAGAGACG
324 CCTAAGCCAACCGATG-AA--A-CGAACGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACG
* * *
18499913 GGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATTTTCATATTTCTCCAT
385 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
*
18499978 GCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
450 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * *** *
18500043 ATGGCAAGACGACTCGTTTTTTATTTTTCACTATTTCCAAAACTTTTTACGGTTCGGGATTTTTT
515 ATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT
* * * * * * *
18500108 AAAATTTTTCTGAAAAGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTCTATTTTTGGTGGA
580 AAATTTTTTC-GGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
18500173 ATGCACAAAAACATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
643 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
**
18500238 TCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
708 TCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
18500303 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
773 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* ** * *
18500368 CATCGCACATCATTTGCGCACACCCCCCCGGCCCCCTTGATCGCCGGAACCCCAACGCCG
838 CATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* *
18500428 CCGGTCAGCTTCTCCGACGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
1 CCGGTCAGGTTCTCCG-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* *
18500493 CATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAA
65 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAA
* * * *
18500558 CTCTGTATGCTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGG
130 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * ** * * * *
18500623 GCACTCACCCGACCAAAGGGGCGGGATGCACAAGCCGGGGATTAG-TCAGGTCCCTCTCTACATG
195 GCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG-CGAGGATCGGCTCGGGTCCCCCTCTGCGTG
* * * * * *
18500687 CTGCCGATCCTGCTACCGTAACCCTC-GATCTGGTCTGATCTTAGACTAGGATTGAACTCCATAT
259 CTGCCGATCCTGCTACTGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
18500751 GCCTAAGCCAACTGATCAAACG-A---GCGGGCGGGCGGGCACTACGCCGGCCAGAAAGACGGGA
323 GCCTAAGCCAACCGATGAAACGAACGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * *
18500812 TACGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
388 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* *
18500877 AATTCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
453 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * ** * *
18500942 GCAAGACGACTCGTTTTTTATTTCTCATGATTTTTGAAACTTTTTGTAGTTTGAGATTTTTTAAA
518 GCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AA
18501007 ATTTTTTCGGAAGGAGTTTCAGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
582 ATTTTTTCGGAAGGAGTTT--GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * * * *
18501071 GTACAAAAAAATTCAGCAAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTATC
645 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * * *
18501136 CCCATTTTAGACACTTTAACGGCTACTGGCAGCAAACCTATAAAATCTGAAACGCACTTTAA-GG
710 CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * **
18501200 GTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACTAGCAGTCA
775 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
18501265 TCACACATCATGTGTGCACACCCCCCGG--CCCCCGATCGTCGGAACCCCAATGCGG
840 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
** * * *
18501320 CTAGTCAGGTTCT--TCG--G---CGAC---GGTGCCCCGACGAAAAAAAATGTGGCACCAGCAC
1 CCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * ** ** *
18501375 ATGCCCAAGCCCAACATGTGCTGGTGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAAC
66 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC
* *
18501440 TCCGTATTCTTAGACTGGGAACGAACTCCGTATGC
131 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
18501475 TTCGACTGGG
Statistics
Matches: 9507, Mismatches: 1641, Indels: 1411
0.76 0.13 0.11
Matches are distributed among these distances:
846 1 0.00
848 94 0.01
852 2 0.00
854 1 0.00
855 4 0.00
857 9 0.00
858 5 0.00
859 2 0.00
860 13 0.00
861 25 0.00
862 17 0.00
863 32 0.00
864 37 0.00
865 7 0.00
866 19 0.00
867 13 0.00
868 13 0.00
869 7 0.00
870 18 0.00
871 101 0.01
872 64 0.01
873 46 0.00
874 281 0.03
875 215 0.02
876 301 0.03
877 21 0.00
878 171 0.02
879 28 0.00
880 74 0.01
881 137 0.01
882 268 0.03
883 184 0.02
884 129 0.01
885 180 0.02
886 183 0.02
887 25 0.00
888 340 0.04
889 419 0.04
890 18 0.00
891 70 0.01
892 207 0.02
893 284 0.03
894 330 0.03
895 289 0.03
896 445 0.05
897 162 0.02
898 122 0.01
899 456 0.05
900 728 0.08
901 806 0.08
902 50 0.01
903 375 0.04
904 501 0.05
905 295 0.03
906 98 0.01
907 12 0.00
908 5 0.00
909 5 0.00
910 8 0.00
911 64 0.01
912 5 0.00
913 7 0.00
914 3 0.00
915 7 0.00
916 8 0.00
917 1 0.00
918 4 0.00
920 2 0.00
921 4 0.00
922 19 0.00
923 1 0.00
924 8 0.00
925 21 0.00
926 15 0.00
927 13 0.00
928 15 0.00
929 8 0.00
930 3 0.00
932 1 0.00
933 6 0.00
934 8 0.00
935 10 0.00
936 2 0.00
937 11 0.00
938 12 0.00
939 8 0.00
940 4 0.00
941 4 0.00
942 7 0.00
943 4 0.00
944 5 0.00
945 2 0.00
946 1 0.00
947 2 0.00
948 2 0.00
949 2 0.00
950 1 0.00
951 8 0.00
952 2 0.00
953 13 0.00
954 9 0.00
956 2 0.00
957 4 0.00
958 10 0.00
959 19 0.00
960 16 0.00
961 15 0.00
962 10 0.00
963 8 0.00
964 3 0.00
965 3 0.00
966 2 0.00
967 1 0.00
968 2 0.00
969 1 0.00
975 4 0.00
976 3 0.00
977 3 0.00
978 3 0.00
979 5 0.00
980 4 0.00
981 2 0.00
982 7 0.00
983 8 0.00
984 6 0.00
985 10 0.00
986 7 0.00
987 8 0.00
988 4 0.00
989 10 0.00
990 10 0.00
991 12 0.00
992 11 0.00
993 5 0.00
994 12 0.00
995 8 0.00
996 9 0.00
997 7 0.00
999 4 0.00
1000 18 0.00
1001 17 0.00
1002 5 0.00
1003 5 0.00
1004 8 0.00
1005 6 0.00
1006 13 0.00
1007 7 0.00
1008 8 0.00
1009 6 0.00
1010 11 0.00
1011 8 0.00
1012 8 0.00
1013 1 0.00
1015 5 0.00
1016 1 0.00
1017 9 0.00
1018 3 0.00
1019 10 0.00
1020 14 0.00
1021 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCGAGGATCGGCTCGGGTCCCCCTCTGCGTGCT
GCCGATCCTGCTACTGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGATGAAACGAACGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
AGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAATTT
TTTCGGAAGGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
Found at i:18490671 original size:26 final size:26
Alignment explanation
Indices: 18490642--18490694 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18490632 CCGGTCTGAT
18490642 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18490668 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18490694 C
1 C
18490695 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18491565 original size:26 final size:26
Alignment explanation
Indices: 18491536--18491588 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18491526 CTGATCCGAT
18491536 CTTAGACT-GAGAATGAACTCCGTATG
1 CTTAGACTGGA-AATGAACTCCGTATG
18491562 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18491588 C
1 C
18491589 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18492473 original size:26 final size:26
Alignment explanation
Indices: 18492437--18492489 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18492427 CTGGTCTGAT
18492437 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
18492463 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18492489 C
1 C
18492490 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18493315 original size:26 final size:26
Alignment explanation
Indices: 18493285--18493363 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
18493275 CAGGTCCGAT
18493285 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18493311 TTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18493337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18493363 C
1 C
18493364 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18494225 original size:26 final size:26
Alignment explanation
Indices: 18494196--18494248 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18494186 CCAGTCTGAT
18494196 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
18494222 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
18494248 C
1 C
18494249 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:18495675 original size:26 final size:26
Alignment explanation
Indices: 18495646--18495698 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18495636 CCGATCCGAT
18495646 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18495672 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18495698 C
1 C
18495699 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18496886 original size:11 final size:11
Alignment explanation
Indices: 18496870--18496902 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
18496860 CGGTCAGGTT
*
18496870 CTCCGACGATG
1 CTCCGACGACG
18496881 CTCCGACGACG
1 CTCCGACGACG
18496892 CTCCGACGACG
1 CTCCGACGACG
18496903 GTGCCCCGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.42, G:0.27, T:0.12
Consensus pattern (11 bp):
CTCCGACGACG
Found at i:18497902 original size:26 final size:26
Alignment explanation
Indices: 18497863--18497915 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18497853 CTGGTTTGAT
18497863 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18497889 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18497915 C
1 C
18497916 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18498797 original size:26 final size:26
Alignment explanation
Indices: 18498758--18498818 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
18498748 CCCTCGGTCT
18498758 AGTCTG-ATG-TTAGACTAGGAATGA
1 AGTCTGTATGCTTAGACTAGGAATGA
* *
18498782 GGTCTGTATGCTTAGACTGGGAATGA
1 AGTCTGTATGCTTAGACTAGGAATGA
*
18498808 AGTCCGTATGC
1 AGTCTGTATGC
18498819 CTAAGGCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 5 0.16
25 3 0.10
26 23 0.74
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.30
Consensus pattern (26 bp):
AGTCTGTATGCTTAGACTAGGAATGA
Found at i:18501450 original size:26 final size:26
Alignment explanation
Indices: 18501422--18501526 Score: 156
Period size: 26 Copynumber: 4.0 Consensus size: 26
18501412 CTGGTCCGAT
* * *
18501422 CTTAGATTGGGAATGAACTCCGTATT
1 CTTAGACTGGGAACGAACTCCGTATG
18501448 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
18501474 CTTCGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
18501500 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
18501526 C
1 C
18501527 CTAAGTCAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:18502390 original size:26 final size:26
Alignment explanation
Indices: 18502362--18502466 Score: 165
Period size: 26 Copynumber: 4.0 Consensus size: 26
18502352 CTGGTCCGAT
* *
18502362 CTTAGATTGGGAATGAACTCCGTATT
1 CTTAGACTGGGAATGAACTCCGTATG
18502388 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18502414 CTTCGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18502440 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18502466 C
1 C
18502467 CTAAGTCAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18502497 original size:940 final size:937
Alignment explanation
Indices: 18500545--18503195 Score: 4194
Period size: 940 Copynumber: 2.8 Consensus size: 937
18500535 TCCGATCTTA
* * * * * *
18500545 GACTGGGAATGAACTCTGTATGCTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
1 GACTGGGAACGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGA
* * * * * * * ** *
18500610 AATGAGCGTGCGGGCACTCACCCGACCAAAGGGGCGGGATGCACAAGCCGGGGATTAGTCAGGTC
66 AATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAACCGGGTC
* ** * * * * *
18500675 CCTCTCTACATGCTGCCGATCCTGCTACCGTAACCCTC-GATCTGGTCTGATCTTAGACTAGGAT
131 CCACTCTATGTGCTGCCGATCCTTCTACCGTAACCCTCTGTTC-AGTCTGATCTTAGACTGGGAA
* * * * *
18500739 TGAACTCCATATGCCTAAGCCAACTGATCAAACGA---G-CGGGCGGGCGGGCACTACGCCGGCC
195 TGAACTCCGTATGCCTATGCCTACTGATGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGACC
* * * *
18500800 -AGAAAGACGGGATAC-GCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
260 AAG-GAGACGGGATGCAG-AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * * * *
18500863 TATTTCTACGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCA
323 TATTTCTGCATGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTGA
* * *
18500928 CGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTCTCATGATTTTTGAAACTTTTTG-TAGT
388 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTGCGA-T
* *
18500992 TTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCAGG-CCCAAACTTGGTAGACGTGATCCTTG
451 TTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * *
18501056 TATTTTTGTTGGCATGTACAAAAAAATTCAGCAAAAAACTGGAAGTGTACAAGATTTTGTGACCA
515 TATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * * *
18501121 TTTGAAAAAACTATCCCCATTTTAGACACTTTAACGGCTACTGGCAGCAAACCTATAAAATCTGA
580 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
18501186 AACGCACTTTAAGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
645 AATGCTCTTTGAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * ** *
18501251 TGTACTAGCAGTCATCACACATCATGTGTGCACACCCCCCGG-CCCCCGATCGTCGGAACCCCAA
710 AGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAA
*
18501315 TGCGGCTAGTCAGGTTCTTCGGCGACGGTGCCCCGACGAAAAAAAATGTGGCACCAGCACATGCC
775 TGCGGCCAGTCAGGTTCTTCGGCGACGGTGCCCCGACGAAAAAAAATGTGGCACCAGCACATGCC
18501380 CAAGCCCAACATGTGCTGGTGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGT
840 CAAGCCCAACATGTGCTGGTGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGT
18501445 ATTCTTAGACTGGGAACGAACTCCGTATGCTTC
905 ATTCTTAGACTGGGAACGAACTCCGTATGCTTC
18501478 GACTGGGAACGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGA
1 GACTGGGAACGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGA
*
18501543 AATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAACCGGGTC
66 AATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAACCGGGTC
18501608 CCACTCTATGTGCTGCCGATCCTTCTACCGTAACCCTCTGTTCAGTCTGATCTTAGACTGGGAAT
131 CCACTCTATGTGCTGCCGATCCTTCTACCGTAACCCTCTGTTCAGTCTGATCTTAGACTGGGAAT
18501673 GAACTCCGTATGCCTATGCCTACTGATGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGACCA
196 GAACTCCGTATGCCTATGCCTACTGATGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGACCA
*
18501738 AGGAGACGGGATGCAGAAGCCATGGATCGAAAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
261 AGGAGACGGGATGCAGAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
18501803 TTCTGCATGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGT
326 TTCTGCATGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGT
* *
18501868 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATATTTGAAACTTTTTGCGATTCGG
391 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT-TTTGAAACTTTTTGCGATTTGG
*
18501933 GATTTTTTAAAATTTTTTCGGAAGGA-TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTT
455 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*** *
18501997 TTGTTGGTGCGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
520 TTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
18502062 AAAAGGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
585 AAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
18502127 TCTTTGAGCGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTA
650 TCTTTGAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
18502192 CCAGCACCCATCGTACATCATGTGTGCACATGCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
714 CCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATG
18502257 CGGCCAGTCAGGTTCTTCGGCGACGGTGCCCCGACGAAAAAAAATGTGGCACCAGCACATGCCCA
777 CGGCCAGTCAGGTTCTTCGGCGACGGTGCCCCGACGAAAAAAAATGTGGCACCAGCACATGCCCA
18502322 AGCCCAACATGTGCTGGTGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
842 AGCCCAACATGTGCTGGTGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
*
18502387 TCTTAGACTGGGAATGAACTCCGTATGCTTC
907 TCTTAGACTGGGAACGAACTCCGTATGCTTC
18502418 GACTGGGAACGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGA
1 GACTGGGAACGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGA
18502483 AATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAACCGGGTC
66 AATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAACCGGGTC
18502548 CCACTCTATGTGCTGCCGATCCTTCTACCGTAACCCTCTGTTCAGTCTGATCTTAGACTGGGAAT
131 CCACTCTATGTGCTGCCGATCCTTCTACCGTAACCCTCTGTTCAGTCTGATCTTAGACTGGGAAT
18502613 GAACTCCGTATGCCTATGCCTACTGATGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGACCA
196 GAACTCCGTATGCCTATGCCTACTGATGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGACCA
*
18502678 AGGAGACGGGATGCAGAAGCCATGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATAT
261 AGGAGACGGGATGCAGAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
18502743 TTCTGCATGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGT
326 TTCTGCATGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGT
* * *
18502808 GAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGG
391 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT-GAAACTTTTTGCGATTTGG
* * * * *
18502873 GATTTTTTAAAATTTTTTTGAAAGCATTTTTGGCCCCAAACTTGGTAGACGCGATCCTTGTATTT
455 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
18502938 TTGTTGGCATGCATAAAAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTGGTGACCATTTGA
520 TTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* ** *
18503002 AAAAAGTGTCCCCATTTTC-GACACTTTAATGGCTACTAACAGCAAACCTGTGAAATCTCAAATG
585 AAAAAGTGTCCCCA-TTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
18503066 CTTTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
649 CTCTTTGA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
18503131 ACCACCACCCACCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGAAACCCAAATG
713 ACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATG
18503196 TCGTCGGTCA
Statistics
Matches: 1586, Mismatches: 114, Indels: 30
0.92 0.07 0.02
Matches are distributed among these distances:
933 196 0.12
934 3 0.00
935 2 0.00
936 156 0.10
937 297 0.19
938 11 0.01
939 25 0.02
940 830 0.52
941 66 0.04
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (937 bp):
GACTGGGAACGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGA
AATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAACCGGGTC
CCACTCTATGTGCTGCCGATCCTTCTACCGTAACCCTCTGTTCAGTCTGATCTTAGACTGGGAAT
GAACTCCGTATGCCTATGCCTACTGATGAAACGAGTGGACGGGCGGGCGGGCACTACGCCGACCA
AGGAGACGGGATGCAGAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTGCATGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAAACTTTTTGCGATTTGGG
ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTGAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCGGC
CAGTCAGGTTCTTCGGCGACGGTGCCCCGACGAAAAAAAATGTGGCACCAGCACATGCCCAAGCC
CAACATGTGCTGGTGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATTCTT
AGACTGGGAACGAACTCCGTATGCTTC
Found at i:18504194 original size:724 final size:726
Alignment explanation
Indices: 18502733--18504197 Score: 1984
Period size: 724 Copynumber: 2.0 Consensus size: 726
18502723 GTTTAGGCAC
* *
18502733 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
18502798 GCCTTGACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTT
66 GCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTT
* *
18502863 TGCGGTTTGGGATTTTTTAAAATTTTTTTGAAAGCATTTTTGGCCCCAAACTTGGTAGACGCGAT
131 TGCGGTTCGGGATTTTTTAAAATTTTTTAGAAAGCATTTTTGGCCCCAAACTTGGTAGACGCGAT
18502928 CCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAACTCGAAGTGTACAAGATTTGGTG
196 CCTTGTATTTTTGTTGGCATGC-------AA-TCA-C-AAAACTCGAAGTGTACAAGATTTGGTG
*
18502993 ACCATTTGAAAAAAGTGTCCCCATTTTCGACACTTTAATGGCTACTAACAGCAAACCTGTGAAAT
251 ACCATTTGAAAAAAGTGTCCCCATTTTCGACACTTTAATGGCTACTAACAGCAAACCTGTAAAAT
* *
18503058 CTCAAATGCTTTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
316 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
18503123 GGCCAAGTACCACCACCCACCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGAAA
381 GGCCAAGTACCACCACCCACCGCACATCACGTGCGCACACCCCCCCGGCCCCCCGATCGCCGAAA
* * *
18503188 CCCAAATGTCGTCGGTCAAGTTCTCCAGCGATGCTCCGATGATGGTGCCTCGACGAAGAAAAATA
446 CCCAAATGTCGTCGGTCAAGTTCTCCAGCGATGCTCCGACGATGGTGCCACGACAAAGAAAAATA
* * * *
18503253 CGGCACCAACACTTGCTCGAGCCCAGCATGTGCTATCACAACACTCGGTCCGGTCTGATCTTAGA
511 CGGCACCAACACATGCCCGAGCCCAGAATGTGCTATCACAACACTCGGTCCGGTCCGATCTTAGA
* * * * *
18503318 CTGGGAATGAACTCCGTATGCTTAAGTCATCCCACGAAACGAGTGTGCAGGCGCTCAGATGACCA
576 CAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCAGGCGCTCAGACGACCA
* * * ** * *
18503383 GAGGGGCGGGATGTGCAAGCCGGGGATCGGTCGGATCCCCCTCTATGTGCTGTCGATCCTACTAT
641 GAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGATCCCCCTCTACATGCTGCCGATCCTACTAC
** * *
18503448 CGTAAGCCTCAGTTTGGTCTG
706 CACAACCCTCAGTCTGGTCTG
*
18503469 ATCTTCATATTTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
1 ATCTTCATA-TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* **
18503534 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
65 AGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT
* * * ** *
18503599 TTGTGGTTCGGGATTTTTTAAAATTTTTTAGGAAGGATTTTTGGCCCCAAACTTGGTAGGTGTGA
130 TTGCGGTTCGGGATTTTTTAAAATTTTTTAGAAAGCATTTTTGGCCCCAAACTTGGTAGACGCGA
*
18503664 T-CTTGTATTTTT-TTCGGCATGC-A-CA-AAAACTC-AGAGTGTACAAGATTTTGTGACCATTT
195 TCCTTGTATTTTTGTT-GGCATGCAATCACAAAACTCGA-AGTGTACAAGATTTGGTGACCATTT
* ** * *
18503723 GAAAAAAGTGTCCCCA-TTTCATACACTTTAATGGCTACTCGCAGCAATCTTGTAAAATCTCAAA
258 GAAAAAAGTGTCCCCATTTTC-GACACTTTAATGGCTACTAACAGCAAACCTGTAAAATCTCAAA
* *
18503787 TGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAA
322 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * *
18503852 GTACCAGCACCCATCGCACATCACGTGGGCACACCCCCCCGGCACCCCCGATCGCCGGAACCCCA
387 GTACCACCACCCACCGCACATCACGTGCGCACACCCCCCCGGC-CCCCCGATCGCCGAAACCCAA
* * * *
18503917 ATG-CAGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCACGGCAAAGAAAAATACGGC
451 ATGTC-GTCGGTCAAGTTCTCCAGCGATGCTCCGACGATGGTGCCACGACAAAGAAAAATACGGC
* * * * *
18503981 ACCAGCACATGCCCGAGCCCAGAATGTGCT-GCTGCAACCCTCGGTCTGGTCCGATCTTAGACAG
515 ACCAACACATGCCCGAGCCCAGAATGTGCTATC-ACAACACTCGGTCCGGTCCGATCTTAGACAG
* * * *
18504045 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCAG-GCGGGCGTTCA-ACCGGCCAG
579 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-AGTGCAGGCGCTCAGA-CGACCAG
* * * *
18504108 AGGGGCGGGATGCGCAAGTCGAGGATTGGCCAGG-TCCCCCTCTACATGTTGCCGATGCTACTAC
642 AGGGGCGGGATGCGCAAGCCGAGGATCGGCC-GGATCCCCCTCTACATGCTGCCGATCCTACTAC
*
18504172 CACAACCCT-TGATCTGGTCTG
706 CACAACCCTCAG-TCTGGTCTG
18504193 ATCTT
1 ATCTT
18504198 AGACTGGGAA
Statistics
Matches: 644, Mismatches: 74, Indels: 34
0.86 0.10 0.05
Matches are distributed among these distances:
722 5 0.01
723 188 0.29
724 245 0.38
725 3 0.00
726 2 0.00
728 1 0.00
735 2 0.00
736 27 0.04
737 171 0.27
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (726 bp):
ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTT
TGCGGTTCGGGATTTTTTAAAATTTTTTAGAAAGCATTTTTGGCCCCAAACTTGGTAGACGCGAT
CCTTGTATTTTTGTTGGCATGCAATCACAAAACTCGAAGTGTACAAGATTTGGTGACCATTTGAA
AAAAGTGTCCCCATTTTCGACACTTTAATGGCTACTAACAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CACCACCCACCGCACATCACGTGCGCACACCCCCCCGGCCCCCCGATCGCCGAAACCCAAATGTC
GTCGGTCAAGTTCTCCAGCGATGCTCCGACGATGGTGCCACGACAAAGAAAAATACGGCACCAAC
ACATGCCCGAGCCCAGAATGTGCTATCACAACACTCGGTCCGGTCCGATCTTAGACAGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCAGGCGCTCAGACGACCAGAGGGGCGGG
ATGCGCAAGCCGAGGATCGGCCGGATCCCCCTCTACATGCTGCCGATCCTACTACCACAACCCTC
AGTCTGGTCTG
Found at i:18504945 original size:26 final size:26
Alignment explanation
Indices: 18504909--18504960 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18504899 CAGGTCTGAT
*
18504909 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18504935 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18504961 TCTAGGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18505786 original size:908 final size:887
Alignment explanation
Indices: 18503469--18505934 Score: 3196
Period size: 908 Copynumber: 2.8 Consensus size: 887
18503459 GTTTGGTCTG
*
18503469 ATCTTCATATTTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
1 ATCTTCATA-TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
18503534 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
65 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTATATTTTTCATGATTTTTGAAACTTT
* * **
18503599 TTGTGGTTCGGGATTTTTTAAAATTTTTTAGGAAGGATTTTTGGCCCCAAACTTGGTAGGTGTGA
130 TTGCGGTTCGGG-TTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTT-GTAGACGTGA
* * * *
18503664 T-C-TTGTATTTTTT--TCG-GC------ATGCA-CAAAAACTCAGAGTGTACAAGATTTTGTGA
193 TCCTTTGTATTTTTTGCTTGCACAAAAAAATTCATTAAAAACTCA-AGTGTACAAGATTTTGTGA
* * * *
18503717 CCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTACTCGCAGCAATCTTGTAAAATC
257 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
18503782 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
322 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGG
* * * *
18503847 TCCAAGTACCAGCACCCATCGCACATCACGTGGGCACACCCCCCCGGCACCCCCGATCGCCGGAA
387 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGCCGAAA
* * * * * * * *
18503912 CCCCAATGCAGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCACGGCAAAGAAAAATA
451 CCTCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG-TGATGGTGCCCCGGCGAAGAAAAATG
* * * * *
18503977 CGGCACCAGCACATGCCCGAGCCCAGAATGTGCTGCTG-CAACC----C--TCG------GTCT-
515 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAAACCTTGTCGGTCGATCTTAGACTG
* *
18504028 GG------TCCG-AT-CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
580 GGAATAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAG
* * * * *
18504085 CAG-GCGGGCGTTCAACCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATTGGCCAGGTCCCCCT
645 C-GTGCGGGCGCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCAGGTCACCCT
* * * * * *
18504149 CTACATGTTGCCGATGCTACTACCACAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGATCT
709 CTACATGCTACCGATCCTACTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACT
* * *
18504214 CCCTATGCCTAAGACAATCGACGAAATGAGCGGGTGGGCGGGCGGCCACTACGCCGGCCAGAGAG
774 CCCTATGCCTAAGACAACCGACGAAAGGAGCGGGTGGGCGGGCGGCCACTACGCCGGCCAAAGAG
*
18504279 ACGGGATGCGAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCAC
839 ACGGGATGCGAAGCCGTGGATCGATAGGGTGATAAGTGGGTTTAGGCAC
* *
18504328 ATCCTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
1 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
18504393 GCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCATGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTATATTTTTCATGATTTTTGAAACTTTT
* * * * *
18504458 TGGGGTTAGAGATTTTTTAAAATTTTTTCGGAATGATTTTTGTCCCCAAACTTGGTAGACGTGAT
131 TGCGGTTCG-GGTTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTT-GTAGACGTGAT
* * * * *
18504523 CCTTT-TATTTTTTTTGGCATACACAAAAAATTTCATCTAAAAACGCAAAGTGTACATGATTTTG
194 CCTTTGTA--TTTTTT-GCTTGCACAAAAAAATTCAT-TAAAAACTC-AAGTGTACAAGATTTTG
*
18504587 TGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
254 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
18504652 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GAGGGCCAATAT
319 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGA-GGCCAATAT
* *
18504716 AAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCAAACCCCCCCGGCCCCCCTGATCGCC
383 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-GATCGCC
* * *
18504781 GAAACCTCAATGCCGCCGGTTAGGTTCTCCTGCGATGCTCCCGTGATGGTGCCCCGACGAAGAAA
447 GAAACCTCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT-CCGTGATGGTGCCCCGGCGAAGAAA
18504846 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAAACCTTTGTCAGGTCTGATCT
511 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAAACC-TTGTC-GGTC-GATCT
* * *
18504911 TAGACTGGGAATTAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGTCTAGGTCAAACGAC
573 TAGACTGGGAA-TAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGAC
* * *
18504976 GAAATGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGAATGCGCAAGCCGGGGATCGGCCGGG
637 GAAATGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCAGG
* * * * *
18505041 TCACCCTCTGCGTGCTACCGATCCTGCT-GCAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
702 TCACCCTCTACATGCTACCGATCCTACTACCA-CAACCCTCGATCCGGTCTGATCTTAGACTGGG
* *
18505105 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGACGGGCGGGCGGGTGGGCGGGCGG
766 AATGAACTCCCTATGCCTAAGACAACCGACG--A-AA--GGA-------GCGGGTGGGCGGGCGG
* ** *
18505170 GCACTACGCCGGCCAAAGAGACGGGATGTTTAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTA
819 CCACTACGCCGGCCAAAGAGACGGGATG-CGAAGCCGTGGATCGATAGGGTGATAAGTGGGTTTA
18505235 GGCAC
883 GGCAC
* * *
18505240 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCATCTAAATTCATACAATGATCCCTTAA
1 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
18505305 GCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTATATTTTTCACGATTTTTGAAACTTTT
66 GCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTATATTTTTCATGATTTTTGAAACTTTT
* * * * * *
18505370 TACGGTTCGGGGTTTTTAAAATATTTTCGGAAGGAGTTTTGGCCCTAAAC-T-TAGACATGATCC
131 TGCGGTTCGGGTTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGTAGACGTGATCC
18505433 TTGTGTATTTGTTTGCTTGCACAAAAAAATTCATTTAAAAACTCGAAGTGTACAAGATTTTGTGA
196 TT-TGTATTT-TTTGCTTGCACAAAAAAATTCA-TTAAAAACTC-AAGTGTACAAGATTTTGTGA
*
18505498 CCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
257 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
18505563 TCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGG
322 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGG
* * *
18505628 GCCAAGTACCAGTACCCATCGCACATCATGTGCGCACATCCCCCCTGGCCCCCCGATCGTCGAAA
387 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCGATCGCCGAAA
* *
18505693 CCTCAATACCGCCGGTCAGGTTCTTCGGCGATGCTCTCGTGATGGTGCCCCGGCGAAGAAAAATG
451 CCTCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC-CGTGATGGTGCCCCGGCGAAGAAAAATG
* * * *
18505758 TGTCGCCAGCACATGCCCGAGTCCAGCATGTGCTGCCATAAACCTCTGTCCGGTCCGATCTTAGA
515 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAAACCT-TGT-CGGT-CGATCTTAGA
* * *
18505823 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCGATGAAA
577 CTGGGAAT-AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAA
* *
18505888 TGAGCGTGCGGGCGCTCAGT-TGGCCAGAGGGGTGGGATGCGCAAGCC
641 TGAGCGTGCGGGCGCTCA-TCCGGCCAGAGGGGCGGGATGCGCAAGCC
18505935 TTGGTCTGGT
Statistics
Matches: 1395, Mismatches: 138, Indels: 99
0.85 0.08 0.06
Matches are distributed among these distances:
858 172 0.12
859 12 0.01
860 2 0.00
861 6 0.00
865 1 0.00
871 3 0.00
872 6 0.00
873 283 0.20
874 8 0.01
879 1 0.00
882 2 0.00
883 1 0.00
889 3 0.00
890 2 0.00
897 4 0.00
898 5 0.00
899 169 0.12
901 1 0.00
902 2 0.00
904 2 0.00
907 3 0.00
908 439 0.31
909 24 0.02
910 3 0.00
911 76 0.05
912 165 0.12
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (887 bp):
ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTATATTTTTCATGATTTTTGAAACTTTT
TGCGGTTCGGGTTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGTAGACGTGATCC
TTTGTATTTTTTGCTTGCACAAAAAAATTCATTAAAAACTCAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGAAACCTCA
ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGTGATGGTGCCCCGGCGAAGAAAAATGTGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAAACCTTGTCGGTCGATCTTAGACTGGGAATA
ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCGTGCG
GGCGCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCAGGTCACCCTCTACATG
CTACCGATCCTACTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATG
CCTAAGACAACCGACGAAAGGAGCGGGTGGGCGGGCGGCCACTACGCCGGCCAAAGAGACGGGAT
GCGAAGCCGTGGATCGATAGGGTGATAAGTGGGTTTAGGCAC
Found at i:18505853 original size:26 final size:26
Alignment explanation
Indices: 18505817--18505869 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18505807 CCGGTCCGAT
18505817 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18505843 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18505869 C
1 C
18505870 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18507585 original size:26 final size:26
Alignment explanation
Indices: 18507546--18507598 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18507536 CCAGTCTGAT
18507546 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
18507572 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
18507598 C
1 C
18507599 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:18507666 original size:886 final size:883
Alignment explanation
Indices: 18505938--18509353 Score: 4244
Period size: 886 Copynumber: 3.8 Consensus size: 883
18505928 GCAAGCCTTG
*
18505938 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---G
* * * * *
18506003 CGAGCGGGTGGGCACTACGCCTGCCAGAGAGACGGGATGTGC-AGCCGTGGATCGATAGGGTGGT
62 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGC
* * * * *
18506067 AGGTGGGTGTAGGCATATCTTCATATTTCTGCATGACAATGCCA-TTTTATGGCTTCTACATTCA
127 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
18506131 TACAATGGTCCCTTAAGCCTTCACGTGAAGGTTCATGGCAAGGACGACTCGTTTTCTATTTTTCA
192 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GAAGACTCGTTTTCTATTTTTCA
* *
18506196 CGATTTTTGAAACTTTTTGCGGTTCGAGG-GTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCC
256 TGATTTTTGAAACTTTTTGCGGTTCG-GGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCC
** *
18506260 AAAC-T--TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCATTTCAAAACTC-
320 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
18506321 AGAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGTTAC
385 A-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
18506386 AGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGAGTGAGTTCTCGAGGTTTGATGAG
449 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG--T--T---
*
18506451 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCC
507 -GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * *
18506516 GGCCCCCCTGATCGCC-GAAACATCAATGCCGTCGGTCAGGTTCTCCGGCGATACTCC-ATCGAT
571 GGCCCCCC-GATCGCCGGAACCCT-AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA-CGAT
* * * * * * *
18506579 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCGGAGCCCAGAATGTGCTACCGTAAAC
633 GGTGCCCCAACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACC
** * * *
18506644 CTTTGTCCGGTCCGATCTTAGACTGGGAATGAATTCCATATGCTTATGCTGGGAATGAACTCCGT
698 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA-GCTGGGAATGAACTCCGT
* * *
18506709 ATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCAGA
762 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-GC
** * * *
18506774 AGCCGGGGATCGGTTGGGTCCCCCTCTGTGTGTTGCCAATCCTGCTGCCACAACCTCCA
826 AGCCGGGGATCGACTGGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACC-CCA
* * *
18506833 GTCTGGTCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACGAAACGAGCGGG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* *
18506898 CGGGCGGGCACTACGTCGGCCATAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGT
* ** * *
18506963 GGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGACATTTTTATGGCTTGTAAACTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
18507028 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACAAGACTCGTTTTCTATTTTTTATGATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCATGATT
* * * * **
18507093 TTTAAAAATTTTTACGGTTCTGGATTTTTTAAAATTTTTTCAAAAGGTGTTTTGGCCCCAAACTT
261 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTT
* * *
18507158 GGTAGACTTGATCCTTGTATTTTTATTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
326 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
18507223 ACAAGATTTTGTGACCATTTGAAAAACGTTTCCCCATTTC-GAACACTTTAATAGCTACTGGCAG
391 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAG
* *
18507287 CAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTCGAGG-T-ATAGGGGGCCAA
455 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTGATAGGGGGCCAA
*
18507349 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAGCCCCCCCGGCACCCCCGAT
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGC-CCCCCGAT
* *
18507414 CGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAC
582 CGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAA
* * ** *
18507479 GAAAAATGTGACACCAGCACATGCCTGAGCCCAGTATGTGCTGCCATAACCCTCGGTCCAGTCTG
647 GAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTG
*
18507544 ATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
712 ATCTTAGACTGGGAATGAACTCCGTATGCTTAG-CTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
18507609 CCACGAAACGAGCGTGCGGGCACTCTGCCGGCTAGAGGGGCGGAATGCGTCAGCCGGGGATCAAC
776 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG-CAGCCGGGGATCGAC
* * *** *
18507674 CGGGTCCCCCTCTGTGTGCTACTGATCCTGCTGCTGTAACCCTCG
840 TGGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCC-CA
* * ** *
18507719 GTTTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAGTCGACAAAACGAGCGGG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
** *
18507784 CGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATATGCAAGCCGTGGATCGATAGGGTGGT
66 CGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGC
* * * *
18507849 AGGTGGGTTTGGGCACATCTTCATATTTTTGCATGCCCATGCAATTTTTATGGCTTGTAAATTCA
127 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
18507914 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTTTATTTTTCAT
192 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCAT
* ** * *
18507979 GATTTTTGAAATTTTTTGCGGTTCGGGATTTTTTTCAATTTTTTTGGAAGGGGTTTTGGCCCCAA
257 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAA
* *
18508044 ACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGGTCAGCTAAAAACTCGA
322 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGA
* * *
18508109 AGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGTTACTG
386 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
18508174 GCAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGGGGTGTGAGTTCTCAAGGTATGATGAGGG
451 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG--T--T----G
* *
18508238 ATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCCCACATCATGTGCGCACACCCCCACC
508 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA----CACC
* * * * * *
18508303 CCCCGGCCCGCCCGATCACCGAAACCCCAATGTCGCCGGTCAGGTTCTCTGACGATGCTCCGACG
567 CCCCGGCCC-CCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACG
* * * *
18508368 ATGGTAG-TCTAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
631 ATGGT-GCCCCAACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCA
* * ** *
18508432 ACCGTCGGTCTGGTCTGATCTTAGACTGGGAATGAACGGCGTATGCTTAGGCTGGGAATGAACTT
695 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA-GCTGGGAATGAACTC
* * **
18508497 CGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGTGCGCTCAATCGGCCAGAGGGGCGGGATGC
759 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
** * * *
18508562 GCAAGCCGGGGATCGACCT-GGTCCCCCTCTGCATGCTACCGATCTTGTTGCCACAACCCTA
824 GC-AGCCGGGGATCGA-CTGGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCCA
* * * *
18508623 TGTCCGGTCTGATCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGA----
1 -GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * * * ** ** **
18508684 GCGGGCGGG-----CG--GG--AG-G-G-CGGGATGCGTAAGCTGGGGTTCGGTCGACTCCCCCT
65 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT-GGCAG
* ** * *
18508737 CTACGTGTT-GTC-GATC--CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
129 GTGGGT-TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
18508798 ACATTGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACA-ACTCGTTTTCTATTTTTCAT
193 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-AGACTCGTTTTCTATTTTTCAT
* * *
18508862 GGTTTTCGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAA-GTAGTTTTGGCCCCA
257 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGT-GTTTTGGCCCCA
* *
18508926 AACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGA
321 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
18508991 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTCCTG
386 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
18509056 GCAGCAAACCTATAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAG
451 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTGAT---AG
* *
18509121 ATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTAGC
512 ---GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGG
* * * * * **
18509186 CCCCCCGATCGCCAGAACCCTAATGCCGTCTGTCAGGTTCTCCAGTGATGCTCCGGTGATGGTGC
573 CCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
*
18509251 CCCAACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGG
638 CCCAACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
18509316 TCTGGTATGATCTTAGATTGGGAATGAACTCTGTATGC
703 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
18509354 CCAAGTCAAC
Statistics
Matches: 2194, Mismatches: 269, Indels: 135
0.84 0.10 0.05
Matches are distributed among these distances:
875 1 0.00
876 149 0.07
877 4 0.00
879 2 0.00
880 3 0.00
882 152 0.07
883 222 0.10
884 55 0.03
885 26 0.01
886 333 0.15
887 14 0.01
888 3 0.00
889 1 0.00
890 272 0.12
891 158 0.07
892 138 0.06
893 58 0.03
894 19 0.01
895 193 0.09
896 2 0.00
897 2 0.00
899 1 0.00
901 57 0.03
903 2 0.00
904 3 0.00
905 319 0.15
906 3 0.00
907 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCATGATT
TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCC
GGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAA
AATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAGCCGGGGATCGACTGGGTC
CCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCCA
Found at i:18508487 original size:26 final size:26
Alignment explanation
Indices: 18508451--18508503 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18508441 CTGGTCTGAT
18508451 CTTAGACTGGGAATGAACGGCGTATG
1 CTTAGACTGGGAATGAACGGCGTATG
* **
18508477 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACGGCGTATG
18508503 C
1 C
18508504 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGGCGTATG
Found at i:18508688 original size:905 final size:898
Alignment explanation
Indices: 18505938--18509353 Score: 4373
Period size: 905 Copynumber: 3.8 Consensus size: 898
18505928 GCAAGCCTTG
* *
18505938 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * *
18506003 CGAGCGGGTGGGCACTACGCCTGCCAGAGAGACGGGATGTGCAGCCGTGGATCGATAGGGTGGTA
66 CGGGCGGG-AGGCACTACGCCGGCCAGAGAGACGGGATATGCAGCCGTGGATCGATAGGGTGGTA
* * * * * *
18506068 GGTGGGTGTAGGCATATCTTCATATTTCTGCATGACAATGCCA-TTTTATGGCTTCTACATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCAT
* *
18506132 ACAATGGTCCCTTAAGCCTTCACGTGAAGGTTCATGGCAAGGACGACTCGTTTTCTATTTTTCAC
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GACGACTCGTTTTCTATTTTTCAT
*
18506197 GATTTTTGAAACTTTTTGCGGTTCGAGG-GTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCA
259 GATTTTTGAAACTTTTTGCGGTTCG-GGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCA
** *
18506261 AAC-T--TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCATTTCAAAACTC-A
323 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * *
18506322 GAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGTTACA
388 -AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
18506387 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGAGTGAGTTCTCGAGGTTTGATGAGG
452 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
18506452 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG--CA-CACCCC
517 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCC
** * * *
18506514 CCGGCCCCCCTGATCGCCGAAACATCAATGCCGTCGGTCAGGTTCTCCGGCGATACTCC-ATCGA
582 CCGGCCCCCC-GATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGA
* * * * * * *
18506578 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCGGAGCCCAGAATGTGCTACCGTAAA
645 TGGTGCCCCAACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAAC
** * * * *
18506643 CCTTTGTCCGGTCCGATCTTAGACTGGGAATGAATTCCATATGCTTATGCTGGGAATGAACTCCG
710 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCG
* *
18506708 TATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCAG
775 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-G
** * * * *
18506773 -AAGCCGGGGATCG-GTTGGGTCCCCCTCTGTGTGTTGCCAATCCTGCTGCCACAACCTCCA
839 CAAGCCGGGGATCGACCT-GGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACC-CTA
* * *
18506833 GTCTGGTCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACGAAACGAGCGGG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * ** *
18506898 CGGGC--G-GGCACTACGTCGGCCATAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCA
66 CGGGCGGGAGGCACTACGCCGGCCAGAGAGACGGGATATGC-AGCCGTGGATCGATAGGGTGGTA
* ** *
18506960 GGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATG-ACATTTTTATGGCTTGTAAACTCA
130 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCA-ATTTTTATGGCTTGTAAATTCA
* * *
18507024 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACAAGACTCGTTTTCTATTTTTTAT
194 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * * **
18507089 GATTTTTAAAAATTTTTACGGTTCTGGATTTTTTAAAATTTTTTCAAAAGGTGTTTTGGCCCCAA
259 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAA
* * *
18507154 ACTTGGTAGACTTGATCCTTGTATTTTTATTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAA
324 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
18507219 GTGTACAAGATTTTGTGACCATTTGAAAAACGTTTCCCCATTTC-GAACACTTTAATAGCTACTG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTG
* *
18507283 GCAGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTCGA-G---G-T-----
453 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
18507337 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAGC-CCCCC
518 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCC
* * *
18507401 CGGCACCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATG
583 CGGC-CCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* * * * **
18507466 GTGCCCCGACGACGAAAAATGTGACACCAGCACATGCCTGAGCCCAGTATGTGCTGCCATAACCC
647 GTGCCCCAACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCC
* * *
18507531 TCGGTCCAGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
712 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCGTA
* * * *
18507596 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCTGCCGGCTAGAGGGGCGGAATGCGTC-
777 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG-CA
* * * *** *
18507660 AGCCGGGGATCAACCGGGTCCCCCTCTGTGTGCTACTGATCCTGCTGCTGTAACCCTCG
841 AGCCGGGGATCGACCTGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCT-A
* * ** *
18507719 GTTTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAGTCGACAAAACGAGCGGG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
18507784 CGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATATGCAAGCCGTGGATCGATAGGGTGGT
66 CGGGCGGG-AGGCACTACGCCGGCCAGAGAGACGGGATATGC-AGCCGTGGATCGATAGGGTGGT
* * *
18507849 AGGTGGGTTTGGGCACATCTTCATATTTTTGCATGCCCATGCAATTTTTATGGCTTGTAAATTCA
129 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCA
* *
18507914 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTTTATTTTTCAT
194 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* ** * *
18507979 GATTTTTGAAATTTTTTGCGGTTCGGGATTTTTTTCAATTTTTTTGGAAGGGGTTTTGGCCCCAA
259 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAA
* *
18508044 ACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGGTCAGCTAAAAACTCGA
324 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGA
* * *
18508109 AGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGTTACTG
388 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
18508174 GCAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGGGGTGTGAGTTCTCAAGGTATGATGAGGG
453 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
18508238 ATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCCCACATCATGTGCGCACACCCCCACC
518 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCACC
* * *
18508303 CCCCGGCCCGCCCGATCACCGAAACCCCAATGTCGCCGGTCAGGTTCTCTGACGATGCTCCGACG
580 CCCCGGCCC-CCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
* * * *
18508368 ATGGTAG-TCTAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
644 ATGGT-GCCCCAACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCA
* * ** *
18508432 ACCGTCGGTCTGGTCTGATCTTAGACTGGGAATGAACGGCGTATGCTTAGGCTGGGAATGAACTT
708 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTC
* * **
18508497 CGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGTGCGCTCAATCGGCCAGAGGGGCGGGATGC
773 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
** * *
18508562 GCAAGCCGGGGATCGACCTGGTCCCCCTCTGCATGCTACCGATCTTGTTGCCACAACCCTA
838 GCAAGCCGGGGATCGACCTGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCTA
* * * *
18508623 TGTCCGGTCTGATCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGG
1 -GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * ** ****
18508688 GCGGGCGGGAGG------G-CGG---GA-TG-C--G-TAAGCTGGGGTTCGG-TCGACTCCCCCT
65 GCGGGCGGGAGGCACTACGCCGGCCAGAGAGACGGGATATGCAGCCG-T-GGATCGA-T-AGGGT
* * * * *
18508737 -CTACGT--G-TT-GTC-GATC--CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
126 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAAT
* * *
18508794 TCATACATTGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACAACTCGTTTTCTATTTTT
191 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * *
18508859 CATGGTTTTCGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAA-GTAGTTTTGGCC
256 CATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGT-GTTTTGGCC
* *
18508923 CCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACT
320 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
18508988 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTC
385 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
18509053 CTGGCAGCAAACCTATAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
450 CTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
18509118 GAGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CC
515 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACC
** * * * * * **
18509180 CCTAGCCCCCCCGATCGCC-AGAACCCTAATGCCGTCTGTCAGGTTCTCC-AGTGATGCTCCGGT
580 CCCCGGCCCCCCGATCGCCGA-AACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGAC
*
18509243 GATGGTGCCCCAACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCA
643 GATGGTGCCCCAACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCA
* * * *
18509308 ACCCTCGGTCTGGTATGATCTTAGATTGGGAATGAACTCTGTATGC
708 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
18509354 CCAAGTCAAC
Statistics
Matches: 2205, Mismatches: 263, Indels: 125
0.85 0.10 0.05
Matches are distributed among these distances:
875 3 0.00
876 139 0.06
877 8 0.00
878 1 0.00
882 155 0.07
883 235 0.11
884 51 0.02
885 5 0.00
886 333 0.15
887 9 0.00
888 4 0.00
889 10 0.00
890 279 0.13
891 149 0.07
892 137 0.06
893 61 0.03
894 18 0.01
895 203 0.09
896 2 0.00
897 3 0.00
898 1 0.00
901 55 0.02
904 7 0.00
905 336 0.15
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
CGGGCGGGAGGCACTACGCCGGCCAGAGAGACGGGATATGCAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCCGG
CCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
CCCAACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGG
TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
GGGATCGACCTGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCTA
Found at i:18513368 original size:26 final size:26
Alignment explanation
Indices: 18513339--18513391 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18513329 CCGGTCCGAT
*
18513339 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
18513365 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
18513391 C
1 C
18513392 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:18515128 original size:26 final size:26
Alignment explanation
Indices: 18515099--18515151 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18515089 CCGATCCGAT
18515099 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18515125 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18515151 C
1 C
18515152 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18516369 original size:875 final size:873
Alignment explanation
Indices: 18510262--18520877 Score: 12370
Period size: 872 Copynumber: 12.0 Consensus size: 873
18510252 TTTTTCACGA
* * * * * * **
18510262 TTTTAAACTTTTTT-GGAATGAGCTTTGGCCCCAAACATGGTAAACGTGATCTTTGTATTTCCGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
18510326 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACCAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
18510391 AGTGTCCCCATTCCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
18510456 TAAGGAGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
18510521 CACCAATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGTCG
261 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCG
* * ** *** * *
18510586 GTCAAGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGGTAAAGAAAAATGTGGCTA-CAGCATA
326 GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC-ACCAGCACA
* ** *
18510650 TGCTCAAGCCCAGCATGTGCTATCGTAACCCTCGGTCTGATCTGATCTTAGACAGGGAATGAACT
390 TGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG----G-TC-----C-------G----
* * * * **
18510715 CCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAATGAAATAAGCGTGCGGGC
434 ----AT-CTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* *
18510780 GCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGG-TCGGGTCCCCCAT-TGTGTGC
494 GCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCT-GGGTCCCCC-TCTGCGTGC
* * ** *
18510843 TACTGATCCTGCTGTCGCAACCCTCGG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
557 TGCCGATCCTGCTACCACAACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
18510907 CCTAAGCCAACCGACGAAATGAGC-TGGCGGGC--G--GGCACTACGCTGGTCAGAGAGATGGGA
621 CCTAAGCCAACCGACGAAACGAGCGTGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGA
* * * * *
18510967 TGCGCAAGCCGTGGATAGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACGTTCC
686 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
18511032 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
751 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * * * *
18511097 GCAAGACAACTCATTTTTTATTTTTCATGGTTTTTGAAACATTTTGCGGTTCAGGATT
816 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* * *
18511155 TTTTAAAATTTCTTCGGAAGGAGTTTTGGCTCCAAGCTTGGTAGACGTGATCCCTTGTATTTTTG
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTG
* * **
18511220 TTGGCATGCATAAAAAAATTTAGCTAAAAACTTAAAGTGTACAAGATTTTGT----A-TTGAAAA
65 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
18511280 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
18511345 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
*
18511410 GCACCCATCGCACATCATGT-CTGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGTCG
260 GCACCCATCGCACATCATGTGC-GCACACCCCCCGGCCCCCT-GATCGTCGGAACCCCAATGCCG
** *
18511474 CCGGTCAGGTTCAACGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCCAGC
323 CCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA-CCAGC
* * * * *
18511539 ACATGCCCGAGCCCAGCATGTGTTGCCGCAACACTCGGTCCGATCCGATCTTAGACTGGGAATGA
387 ACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
* * * *
18511604 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGAGGGTGCTCAGCCGGCCAGAGGGGCGGG
452 ACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * *
18511669 ATTTCGCAAGTCGGGGATCGG-TCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTA-CAGCAACC
517 A-TGCACAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCA-CAACC
* * * * * * * *
18511732 CTCAGTCCGGTTCAATCTTAGATTGGGAATGAACTCCGTATGGCTAAGCCAACTGACGAAACTAG
579 CTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * *
18511797 CATGCGGACGGGCGGGCGGGCACTACGCAGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGAT
644 C--GTGG-CGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * *
18511862 AGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCCGCATGCCAATGCTATTTTTCTGGCTTG
706 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
18511927 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTTGTTTTCTA
771 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
18511992 TTTTTCATGATTTTCGAAAC-TTTTACGGTTCGGGATT
836 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
*
18512029 TTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACCTGGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18512093 TGGCATGCA-TAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
18512157 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* ** *
18512222 TAAGAGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * *
18512287 CACCCATCACACATCATGTGCGCACACCCCCTCGACCCCCCGATTGCCGGAACCCCAATGCCGCA
261 CACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCTGATCGTCGGAACCCCAATGCCGCC
* * * * * * *
18512352 TGTCAGGTTATCCGGTGATGCTCCGGCGA-GGTGCGCCGACGAAGAAAAATGCTGCACCAGCACG
325 GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* *
18512416 TGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACT
390 TGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
* * *
18512481 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAAGGGCGGGATG
455 CCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * *
18512546 CACAAACCGGGGATCGG-TCGGGTCCCCCTCTGTGTACTGCCAATCCTGCTACCGCTACCCTCGG
520 CACAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGG
* * * * * *
18512610 TCCGGTCTGATCTTAGACTGGGAATTAACTCCGTATACCTAAGCCAACCGACGAAACTAGTG-GG
584 TTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGG
* **
18512674 CGGGCGGGCAGGCACTACGCCGGCCAGAGTGACGGGATGCGCAAGCCAAGGATCGATAGGGTGGT
649 CGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
18512739 AAGTGGATTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTCAATTCA
714 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
**
18512804 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAATTTTCTATTTTTCAT
779 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
18512869 GATTTTTGAAACTTTTTACGGTTCGGGATT
844 GATTTTTGAAACTTTTTACGGTTCGGGATT
* * * *
18512899 TTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACGTGGTAGACGTCATCCTTTTATTTTTT
1 TTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * * * *
18512963 TTGGCATGCACAAAAATATTCAGCTAAAAACTCAAACTATACAACATTTTGTGACCATTTGAAAA
65 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * *
18513028 AAGTGTCCCCATTTCGGACACTTTGATTGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
18513093 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
18513158 GCACCCATCGCACATCATGTGCCCACGCCCCGCCCTCGGCCCCCTCGATCGTTGGAACCCCAATG
260 GCACCCATCGCACATCATGTGCGCA--CACC-CCC-CGGCCCCCT-GATCGTCGGAACCCCAATG
* * * * * *
18513223 CCGCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGTCTCGACGAAGAAAAATGTGGCACCA
320 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
18513288 GCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAAT
385 GCACATGCCCAAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G----T---CT--G---
* * * * *
18513353 GAACTCCGTATGCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAATGAGCGTA
429 G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * *
18513418 CGGCCACTAAACCGGCCAGAAGGGCGGGATGCACAAGCTGGGGATCGGCCGGGT--CCC-C--C-
489 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCTGGGTCCCCCTCTGCG
* * * *
18513477 T-CTG-CGA----GCTGCCACAACCCTCGGCT-GTTCTGATCTTAGACTGGGAATGAACTCCGTA
554 TGCTGCCGATCCTGCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
18513535 TGCCTAAGCCAACTGACGAAACGAGCGGGAGGGTGGACGGGCGGGCACTACGCCGGCCA-AGAGA
619 TGCCTAAGCCAACCGACGAAACGAGCGTG-GCG-GG-CGGGCAGGCACTACGCCGGCCAGAGAGA
* *
18513599 CGGGATGCGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
681 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
** * *
18513664 ATGTAAATGCCATTTTTATGGCTCGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTT
746 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* ** ** * * * * **
18513729 TAATGGTGAGATAACTCGTTTTCTATTTTTTATGATTTTCGAAGCTTTTTGCGGTTTAGGATT
811 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
*
18513792 TTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
18513857 TGGCATGCAAAAAAAAAGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
** * *
18513922 AGCATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
18513987 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAACTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * ** *
18514051 CACCCATTGCACATCATGTGTGCACACCCCCCGACCCCTTGATCGTCGGAACCTTAATACCGCCG
261 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCG
* * *
18514116 GTCAGGTTCTCCAGTGATGCTCCGACGAT-GTG-CCCGACGAAGAAAAATGCGGTACCAGCACAT
326 GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * * * *
18514179 GCTCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
391 GCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * * * *
18514244 CGTATGTCTAAGCCAACGCACGAAACAAACGTGTGGGTGTTCAGCCGGCCAGAGGGGCGGGAT-A
456 CGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* ** * * * * * * ** *
18514308 AGCAAGCCGAGGATCGGCCAGGTCCCCCTCTACGTGATACCAATCTTACTACCGTAACCCTTGGT
521 A-CAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGT
* * * * * *
18514373 TCGCTCCGATCTTATACTAGGAATGAACTCCGTGTGCCTAAGCCAATCGACGAAAGGAGCG-GGC
585 TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGGC
* ** * *
18514437 AGGCGGTCGAGCAGGCACTACGTTGGTCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
650 --G-GG-CGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* **
18514502 GGTAGGTGGGTTTAGGCAGATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
711 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
18514567 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCGATTGTT
776 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** *
18514632 CACGATTTTCAAAACTTTTTACGGTTCAGGATT
841 CATGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
18514665 TTTGAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
18514729 TGGCATGCACAAAAAAAGTCAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
** *
18514794 AGCATCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCT
131 AGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * **
18514858 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGCATAGTTGGCCAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
** * ** *
18514923 GCACCCATCGCACATCATGTGCATACA-CCCCCTGCCCCCTCGATCGTCAAAACCCCAATGCCGT
260 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCT-GATCGTCGGAACCCCAATGCCGC
* * * ** *
18514987 CGGTCAGGTTCTCCGGGGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCAC
324 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * *
18515052 ATGCCCGAGCCCAGCATATGTTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAC
389 ATGCCCAAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CG----G----T---CT--G---G---
* * * *
18515117 TCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACGGG
430 TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * ** * * *
18515182 CCCTCAACCGGCCAGAGGGGCGAGATGCGCAAGCCAAGGATC-GATCGTGT-CCCCTAT--GTGC
493 CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGC
* * ** * *
18515243 TACCGATCCTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
557 TGCCGATCCTGCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
** * * *
18515308 CTAAGCCAACCGACGAATTGAACG-GGCGGGCGGGCAGGCACTAAGCCCGCCAGAGAGACGGGAT
622 CTAAGCCAACCGACGAAACGAGCGTGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGAT
* *
18515372 GCGCAAGCCGTGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCA
687 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
18515437 ATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
752 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
18515502 CAAGACGACTCATTTTCTATTTTTCACGATTTTTTAATCTTTTTACGGTTCGTGATT
817 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
** * * **** * *
18515559 TGTGAAAAATTTTTTAGAAATCCTTTTGTGGCCTCAAACTTGGTAGACATGATCCTTGTATTTTT
1 T-TTTAAAATTTTTTCGGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
18515624 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
64 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * * * * *
18515689 AAAGTGACCGCATTTCCGAAACTTTCATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTC
129 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
18515754 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACC
194 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
18515819 AGCACCCATTGCACAT-ATTGTGGGCACGCCCCCC-ACCCCCTGATCGTCGGAA-CCCAATGCCG
259 AGCACCCATCGCACATCA-TGTGCGCACACCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCG
18515881 CCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
323 CCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* *
18515946 CATGCTTC-AGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
388 CATGC-CCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
* * * * *
18516010 ACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTCAGCCGGCTAGAGGGGTGGG
452 ACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * *
18516075 ATGCACAAG-CGGGTATCGGCTAGGTCCCCCTCTACATGCTGCCGATCTTACTACCACAACCCTC
517 ATGCACAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTC
* * * * * *
18516139 GGTTCGCTCTGATCTTAGACTAGGAATGAACTCCGTGTGCCTAAGCCAATCGACGAAAGGAGCGG
582 GGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-G
* * * * *
18516204 TCAGGCGGGCGGGTAGGCACTACGTCGGTCAGAGAGACGGGATGCACAAGCCGTGGATCGATAAG
646 T--GGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
** ** *
18516269 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAACACAATTTTTATGGCTTGTAA
709 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
18516334 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCGATTG
774 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* ** **
18516399 TTCACGATTTTCAAAACTTTTTACGGTTCAAGATT
839 TTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
18516434 TTTGAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18516498 TGGCATGCACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
18516563 AGTGTCCCCATTTCAGACACTTTAATGGCAACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * * *
18516628 TAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATA-GGGGCTAATATAAGGGCAAAGTATCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
*
18516692 CACCCATCGCACATCATGTGCGCACACCCCCTCCCGGCTCCCCCT-ATCG-CTGGAACCCCAATA
261 CACCCATCGCACATCATGTGCGCACA--CCC-CCCGG--CCCCCTGATCGTC-GGAACCCCAATG
* * * * ** *
18516755 CCGTCGGTCAGGTTCTCCAGCGGTGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCA
320 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* *
18516820 GCACATGCCTAAGCCCACCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
385 GCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
* * * *
18516885 GAACTCTGTATGCTTAGACTGGGAATGAACTCCGTCTGCCTAAGTCAAACCATGGAACGAGCATG
450 GAA--C----T-C-----C---G--T--A-T--G--T--CTAAGTCAACCCACGAAACGAGCGTG
* * * *
18516950 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGAT-GGATCGGGTCCCCCTCTGT
489 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCT-GGGTCCCCCTCTGC
* * * * ** * * * *
18517014 GTGTTGCCAATCTTGCTGCTGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
553 GTGCTGCCGATCCTGCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * *
18517079 ATGCCTAAGCCAACCGATGAAACGAACG-GGCGGGCAGGCAGGCACTACGTCGGCCAAAGAGACG
618 ATGCCTAAGCCAACCGACGAAACGAGCGTGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACG
* * *
18517143 GGATACGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATATTCATATTTCTGCAT
683 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* *
18517208 GCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTC
748 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * ** *
18517273 ATGGCAGGACGACTTGTTTTCTATTTTTCATGATTTTCAAAAATTTTTACGGTTCGGGATT
813 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* * *
18517334 TTTTGAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
18517399 TGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
18517464 AGTGTCCCCATTTCAGACATTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
18517529 TAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * ** * **
18517594 CACCCATTGTACATCATGTGCGCACACCCCCCCGGCCCCCCAATC-TCCGAAACCCCAATGCTAC
261 CACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTGATCGT-CGGAACCCCAATGCCGC
* * * ** *
18517658 CGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTATCCCGACGAAGAAAAATGCGGCACCAACAC
324 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * *
18517723 ATGCCCGAGCCTAGCATGTG-TAGCTGCAACCCTCTGTCTGGCTCGATCGTAGACTGGGAATGAA
389 ATGCCCAAGCCCAGCATGTGCT-GCCGCAA----C---C---CTCG---GT---CT--G---G--
* *
18517787 CTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
430 -TCC-GAT-CTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGG
** * * * * *
18517852 GCGCTCAGCTTGCCAGAGGGGCGGGGATGCGCAAGCCGAGGATCAGCCGGGTCCCCCTCTGTGTG
492 GCGCTCAGCCGGCCAGAGGGGC-GGGATGCACAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTG
* * * * * * * *
18517917 TTGTCGATCCTACTACCGCAACCCTTGG-TCTGATCCAATCTTAGATTGGGAATGAACT-CGTAT
556 CTGCCGATCCTGCTACCACAACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * *
18517980 GCCTAAGCCAACCGATGAAACAAGCGGACGGGCGGGCGGGCGGGTACTACACCGGCTAGAAAGAC
620 GCCTAAGCCAACCGACGAAACGAGC-G--TGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGAC
* * ** * *
18518045 GGGATGCGCAAGCCTTGGATCGATAGGGCGGTACATGGGTTTAGGCACATCCTCATATTTCTACA
682 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
*
18518110 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTT
747 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
18518175 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
812 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* * * ** * *
18518237 TATTAAAATTTTTTTGAAAGGAGTTTTGGCCAAAAACTTGGTAGACGTGATCCTTTTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
18518302 TGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAGGTGTACAAGATTTTGTGACCATTTGAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAA
*
18518366 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
** *
18518431 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGCGAGGGGGCCAATATAAGGGCCAAGTGCCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
18518496 GCACCCATCGCACATCCTGTGCGCACACCCCCCCGGCCACCCCGATCGTCAGAACCCCAATGCCG
260 GCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC-CCCTGATCGTCGGAACCCCAATGCCG
* * *
18518561 CCGGTCAGGTTCT------A-----CGATGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCA
323 CCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* * * * *
18518615 CATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTAGTTCAATCTTAGACTGGGAATGAA
388 CATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
*
18518680 CTCTGTTTGCTCAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGA
453 ---------CTC---C---G--T--A---TG--T--CTAAGTCAACCCACGAAACGAGCGTGCG-
* * * * * *
18518745 GG-GCTCAGTCGACCAGAGGGGCAGGATGCCCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTG
491 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTG
* * * * *
18518809 CTGCCGATCCTGCTACTAC-ACCCTTGG-TCTGGTTCAATCTTAGACTGGGAATGAACTCCGTGT
556 CTGCCGATCCTGCTACCACAACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
18518872 GCCTAAGTCAACCGACGAAACGAGCGT-GCGGGC--G--GGCACTACACCGGCCAGAGAGACGGG
620 GCCTAAGCCAACCGACGAAACGAGCGTGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGG
18518932 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
685 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
** *
18518997 CAATGCCATTTTTATATCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
750 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
** *
18519062 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGATT
815 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
18519121 TTTTAAAATTTTTT-GGAAGGATTTTTGGCCCCAAACTTGATAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
18519185 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
18519250 AGTGTCCCCATTTCAGACACTTGAATGGCTATTGGCAGAAAACCTGCAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
18519315 TAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
18519379 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCGTCCC-GATCGTCAGAACCCCAATGTCG
261 CACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC--CCCTGATCGTCGGAACCCCAATGCCG
* * ** *
18519443 CCGGTCACGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATTAA-AAGAAATACGGCACCAGC
323 CCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAA-AAATGCGGCACCAGC
* *
18519507 ACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCGGTC-GGTCTGATCTTAGACTGGGAATGA
387 ACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
* * * * ** * * **
18519571 ACT-CGTATG-CTTAGACTGGGAATCAACTCCA-TATACCTA-AGT-C-AACACACAAAAC-G--
452 ACTCCGTATGTC-TA-A----G--TCAAC-CCACGA-AACGAGCGTGCGGGCGCTC-AGCCGGCC
* * * * * * * * *
18519627 AG-CGTGCAGG-CGCTC-AGTCGAGCATCGGTTGGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
506 AGAGGGGCGGGATGCACAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * *
18519689 GCCACAACCCTCTG-TCTGATCCGATCTTAGACTGGGAATGAAATTCGTATGCCTAAGCCAACCG
570 ACCACAACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
18519753 ACTAAACGAGCG-GGCGGGCGATCGGGCGGGCACTACGTCGACCAGAGAGACAGGATGCGCAAGC
634 ACGAAACGAGCGTGGC-GG-G--CGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
18519817 CGTGGATCGGTAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGTCAATGCCATT
695 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
18519882 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
760 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
18519947 CTCGTTTTCTTTTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATT
825 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
** *
18519996 TTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
18520061 TGGCATGCACAAAAAACTTCAGCTAAAAACTCAAAGTGTACAAGATTTGGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
18520126 AGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * *
18520191 TAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGTGGGCCAACATAAGGGCAAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
18520256 CACCCATCGCACATCATGTGCGCATAGCCCCCCGACCCCCTGATCGCCGGAACCCCAATGCCGCC
261 CACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCC
* ** * *
18520321 AGTCAGG---T-------T-CTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCGCA
325 GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * ** * * *
18520375 TTCTCGAGCCCAGCATGTGCTGCCATAACCCTTGGTCTAGTCTGATCTTAGACTGGGAATGAACT
390 TGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
*
18520440 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
455 CCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * *
18520505 CACAAGTCGGGGATCGGCCGGTTCTCCCTCTGCGTGCTGCCGATCCTGCTACCATAACCCTCTGT
520 CACAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGT
* * * * * *
18520570 GT-GCTCCAATATTTGACTGGGAATGAACTCCGTATGCGTAAGCCAACTGACGAAACGA-----G
585 -TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGG
* * *
18520629 CGGGCGGGTAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGC
649 CGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *** *
18520694 AAGTGGGTTTCGGTGTATCTTCATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCA
714 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
18520759 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAA
779 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* *
18520824 GATTTTTGAAACTTTTTATGGTTCAGGATT
844 GATTTTTGAAACTTTTTACGGTTCGGGATT
**
18520854 TTTTAAAATTTTTTCAAAAGGAGT
1 TTTTAAAATTTTTTCGGAAGGAGT
18520878 GCAAAGCTGT
Statistics
Matches: 8406, Mismatches: 1020, Indels: 629
0.84 0.10 0.06
Matches are distributed among these distances:
858 227 0.03
859 90 0.01
860 11 0.00
861 11 0.00
862 8 0.00
864 5 0.00
865 88 0.01
866 237 0.03
867 211 0.03
868 16 0.00
869 280 0.03
870 45 0.01
871 235 0.03
872 716 0.09
873 417 0.05
874 186 0.02
875 685 0.08
876 461 0.05
877 291 0.03
878 2 0.00
879 8 0.00
880 5 0.00
881 2 0.00
882 129 0.02
883 177 0.02
884 219 0.03
885 50 0.01
886 8 0.00
887 47 0.01
888 15 0.00
889 8 0.00
890 230 0.03
891 122 0.01
892 195 0.02
893 563 0.07
894 258 0.03
895 157 0.02
896 28 0.00
897 242 0.03
898 93 0.01
899 169 0.02
900 306 0.04
901 307 0.04
902 52 0.01
903 630 0.07
904 122 0.01
905 2 0.00
906 2 0.00
908 1 0.00
909 4 0.00
910 1 0.00
912 2 0.00
913 1 0.00
915 2 0.00
917 1 0.00
918 1 0.00
919 1 0.00
920 1 0.00
923 4 0.00
924 2 0.00
925 17 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (873 bp):
TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCG
GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
GCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
CGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
ACAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTT
CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGGCG
GGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTTGAAACTTTTTACGGTTCGGGATT
Found at i:18517801 original size:26 final size:26
Alignment explanation
Indices: 18517772--18517822 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18517762 GGCTCGATCG
18517772 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
18517798 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
18517823 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:18518248 original size:903 final size:900
Alignment explanation
Indices: 18510262--18520877 Score: 12693
Period size: 875 Copynumber: 12.0 Consensus size: 900
18510252 TTTTTCACGA
* * * * * * **
18510262 TTTTAAACTTTTTT-GGAATGAGCTTTGGCCCCAAACATGGTAAACGTGATCTTTGTATTTCCGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
18510326 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACCAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
18510391 AGTGTCCCCATTCCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
18510456 TAAGGAGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
18510521 CACCAATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTGATCGT-CGGAACCCCAATGCCGT
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCCGGAACCCCAATGCCGC
* * * *
18510584 CGGTCAAGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGGTAAAGAAAAATGTGGCTA-CAGCA
326 CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGC-ACCAGCA
* * * * * *
18510648 TATGCTCAAGCCCAGCATGTGCT-ATCGTAACCCTCGGTCTGATCTGATCTTAGACAGGGAATGA
390 CATGCCCAAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCTGGTC-GATCTTAGACTGGGAATGA
* * * * **
18510712 ACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAATGAAATAAGCGTGCG
453 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * *
18510777 GGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCAT-TGTGT
518 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCC-TCTGCGT
* * ** * * * *
18510841 GCTACTGATCCTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
582 GCTGCCGATCCTGCTACCACAACCCTTGGTCTGCTCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
18510906 GCCTAAGCCAACCGACGAAA--TGA---GCTGGCGGGCGGGCACTACGCTGGTCAGAGAGATGGG
647 GCCTAAGCCAACCGACGAAAGCGGACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGG
* * * * *
18510966 ATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACGTTC
712 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
18511031 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
777 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * * * * *
18511096 GGCAAGACAACTCATTTTTTATTTTTCATGGTTTTTGAAACATTTTGCGGTTCAGGATT
842 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* * *
18511155 TTTTAAAATTTCTTCGGAAGGAGTTTTGGCTCCAAGCTTGGTAGACGTGATCCCTTGTATTTTTG
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTG
* * **
18511220 TTGGCATGCATAAAAAAATTTAGCTAAAAACTTAAAGTGTACAAGATTTTGT----A-TTGAAAA
65 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
18511280 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
18511345 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
*
18511410 GCACCCATCGCACATCATGT-CTGCACA-CCCCCCGGCCCCCTCGATCGT-CGGAACCCCAATGT
260 GCACCCATCGCACATCATGTGC-GCACACCCCCCCGGCCCCC-CGATCGTCCGGAACCCCAATGC
** * * ** *
18511472 CGCCGGTCAGGTTCAACGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCCA
323 CGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCA-CCA
* * * *
18511537 GCACATGCCCGAGCCCAGCATGTGTTGCCGCAA--CAC--TC--G--G-TC-----C-------G
387 GCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCGATCTTAGACTGGGAATG
* *
18511581 -A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGA
452 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * *
18511642 GGGTGCTCAGCCGGCCAGAGGGGCGGGATTTCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCA
517 GGGCGCTCAGCCGGCCAGAGGGGCGGGA-TGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCG
* ** * * * *
18511707 TGCTGCCAATCCTGCTA-CAGCAACCCTCAGTCCGGTTCAATCTTAGATTGGGAATGAACTCCGT
581 TGCTGCCGATCCTGCTACCA-CAACCCTTGGTCTGCTCCAATCTTAGACTGGGAATGAACTCCGT
* * * * * * *
18511771 ATGGCTAAGCCAACTGACGAAA-CTAGCATGCGGACGGGCGGGCGGGCACTACGCAGACCAGAGA
645 ATGCCTAAGCCAACCGACGAAAGC--GGA--CGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGA
* * *
18511835 GATGGGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCC
706 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
18511900 GCATGCCAATGCTATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
771 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * *
18511965 TTTCGTGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCGAAAC-TTTTACGGTTCGGGATT
836 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
*
18512029 TTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACCTGGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18512093 TGGCATGCA-TAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
18512157 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* ** *
18512222 TAAGAGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
18512287 CACCCATCACACATCATGTGCGCACACCCCCTCGACCCCCCGATTG-CCGGAACCCCAATGCCGC
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCCGGAACCCCAATGCCGC
** * ** * ** *
18512351 ATGTCAGGTTATCCGGTGATGCTCCGGCGA-GGTGCGCCGACGAAGAAAAATGCTGCACCAGCAC
326 CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCAC
* * *
18512415 GTGCCCAAGCCCAGCATGTGCTGCCGCAA----C---C----C--TC--AG--T----CTG-A-T
391 ATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCGATCTTAGACTGGGAATGAACT
*
18512457 CCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGC
456 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * *
18512520 GCTCAGCCGGCCAGAAGGGCGGGATGCACAAACCGGGGATCGGTCGGGTCCCCCTCTGTGTACTG
521 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTG
* * * * * * ** * *
18512585 CCAATCCTGCTACCGCTACCCTCGGTCCGGTCTGATCTTAGACTGGGAATTAACTCCGTATACCT
586 CCGATCCTGCTACCACAACCCTTGGTCTGCTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
18512650 AAGCCAACCGACGAAA-C-TAGTGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGTGACGGGATG
651 AAGCCAACCGACGAAAGCGGA-CGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATG
** * * *
18512713 CGCAAGCCAAGGATCGATAGGGTGGTAAGTGGATTGAGGCACATCTTCATATTTCTGCATGCCAA
715 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
18512778 TGCCATTTTTATGGCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
780 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
** *
18512843 AAGACGACTAATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
845 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* * * *
18512899 TTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACGTGGTAGACGTCATCCTTTTATTTTTT
1 TTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * * * *
18512963 TTGGCATGCACAAAAATATTCAGCTAAAAACTCAAACTATACAACATTTTGTGACCATTTGAAAA
65 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * *
18513028 AAGTGTCCCCATTTCGGACACTTTGATTGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
18513093 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
18513158 GCACCCATCGCACATCATGTGCCCACGCCCCGCCCTCGGCCCCCTCGATCGT-TGGAACCCCAAT
260 GCACCCATCGCACATCATGTGCGCAC-ACCC-CCC-CGGCCCCC-CGATCGTCCGGAACCCCAAT
* * * ** *
18513222 GCCGCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGTCTCGACGAAGAAAAATGTGGCACC
321 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACC
* * *
18513287 AGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAA
386 AGCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGT-CGATCTTAGACTGGGAA
* * *
18513352 TGAACTCCGTATGCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAATGAGCGT
450 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * * *
18513417 ACGGCCACTAAACCGGCCAGAAGGGCGGGATGCACAAGCTGGGGATCGGCCGGGT--CCC-C--C
515 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGC
* * * **
18513477 -T-CTG-CGA----GCTGCCACAACCCTCGG-CTGTTCTGATCTTAGACTGGGAATGAACTCCGT
580 GTGCTGCCGATCCTGCTACCACAACCCTTGGTCTGCTCCAATCTTAGACTGGGAATGAACTCCGT
* * * *
18513534 ATGCCTAAGCCAACTGACGAAACGAGCGGGA-GGGTGGACGGGCGGGCACTACGCCGGCCA-AGA
645 ATGCCTAAGCCAACCGACG-AA--AGC-GGACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGA
* *
18513597 GACGGGATGCGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
706 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
** * *
18513662 GCATGTAAATGCCATTTTTATGGCTCGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAG
771 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* ** ** * * * * * **
18513727 TTTAATGGTGAGATAACTCGTTTTCTATTTTTTATGATTTTCGAAGCTTTTTGCGGTTTAGGATT
836 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
*
18513792 TTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
18513857 TGGCATGCAAAAAAAAAGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
** * *
18513922 AGCATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
18513987 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAACTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * ** ** *
18514051 CACCCATTGCACATCATGTGTGCACA-CCCCCCGACCCCTTGATCGT-CGGAACCTTAATACCGC
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCCGGAACCCCAATGCCGC
* * ** *
18514114 CGGTCAGGTTCTCC-AGTGATGCTCCGACGAT-GTG-CCCGACGAAGAAAAATGCGGTACCAGCA
326 CGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCA
* * * *
18514176 CATGCTCGAGCCTAGCATGTGCTG-TCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGA
390 CATGCCCAAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCTGGTC-GATCTTAGACTGGGAATGA
* * * *
18514240 ACTCCGTATG--T---C------T--A------A-G-C-----CAACGCACGAAACAAACGTGTG
453 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * ** * *
18514279 GGTGTTCAGCCGGCCAGAGGGGCGGGATAAGCAAGCCGAGGATCGGCCAGGTCCCCCTCTACGTG
518 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTG
* * * * * ** * * * *
18514344 ATACCAATCTTACTACCGTAACCCTTGGT-TCGCTCCGATCTTATACTAGGAATGAACTCCGTGT
583 CTGCCGATCCTGCTACCACAACCCTTGGTCT-GCTCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * * * ** *
18514408 GCCTAAGCCAATCGACGAAAGGAGCGGGCAGGCGGTCGAGCAGGCACTACGTTGGTCAGAGAGAC
647 GCCTAAGCCAACCGACG-AA--AGCGGACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGAC
* * **
18514473 GGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTGTG
709 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
18514538 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
774 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * ** *
18514603 CATGGCAAGACGACTCGTTTTCGATTGTTCACGATTTTCAAAACTTTTTACGGTTCAGGATT
839 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
18514665 TTTGAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
18514729 TGGCATGCACAAAAAAAGTCAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
** *
18514794 AGCATCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCT
131 AGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * **
18514858 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGCATAGTTGGCCAATATAAGGGCCAAGTACCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * **
18514923 GCACCCATCGCACATCATGT--GCATACACCCCCTGCCCCCTCGATCGT-CAAAACCCCAATGCC
260 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCCGGAACCCCAATGCC
* ** * *
18514985 GTCGGTCAGGTTCTCCGGGGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGC
324 GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGC
* * * * ** * *
18515050 ACATGCCCGAGCCCAGCATATGTTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGA
389 ACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGT-CGATCTTAGACTGGGAATGA
* * *
18515115 ACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACG
453 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * ** * *
18515180 GGCCCTCAACCGGCCAGAGGGGCGAGATGCGCAAGCCAAGGATCGATCGTGT-CCCCTAT--GTG
518 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTG
* * ** * * *
18515242 CTACCGATCCTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
583 CTGCCGATCCTGCTACCACAACCCTTGGTCTGCTCCAATCTTAGACTGGGAATGAACTCCGTATG
** * * *
18515307 CCTAAGCCAACCGACG-AATTGAACGGGCGGGCGGGCAGGCACTAAGCCCGCCAGAGAGACGGGA
648 CCTAAGCCAACCGACGAAAGCGGACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGA
* *
18515371 TGCGCAAGCCGTGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCC
713 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
18515436 AATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
778 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
18515501 GCAAGACGACTCATTTTCTATTTTTCACGATTTTTTAATCTTTTTACGGTTCGTGATT
843 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
** * * **** * *
18515559 TGTGAAAAATTTTTTAGAAATCCTTTTGTGGCCTCAAACTTGGTAGACATGATCCTTGTATTTTT
1 T-TTTAAAATTTTTTCGGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
18515624 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
64 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * * * * *
18515689 AAAGTGACCGCATTTCCGAAACTTTCATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTC
129 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
18515754 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACC
194 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
18515819 AGCACCCATTGCACAT-ATTGTGGGCAC-GCCCCCC-ACCCCCTGATCGT-CGGAA-CCCAATGC
259 AGCACCCATCGCACATCA-TGTGCGCACACCCCCCCGGCCCCCCGATCGTCCGGAACCCCAATGC
* * **
18515879 CGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
323 CGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAG
* * *
18515944 CACATGCTTC-AGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
388 CACATGC-CCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGT-CGATCTTAGACTGGGAAT
18516008 GAACTCCGTATG--T---C------T--A------A-G-C-----CAACCCACGAAACGAGCGTG
451 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * ** *
18516047 CGGGTGTTCAGCCGGCTAGAGGGGTGGGATGCACAAG-CG-GGTATCGGCTAGGTCCCCCTCTAC
516 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGG-ATCGGCCGGGTCCCCCTCTGC
* * * * ** *
18516110 ATGCTGCCGATCTTACTACCACAACCCTCGGT-TCGCTCTGATCTTAGACTAGGAATGAACTCCG
580 GTGCTGCCGATCCTGCTACCACAACCCTTGGTCT-GCTCCAATCTTAGACTGGGAATGAACTCCG
* * * * * * *
18516174 TGTGCCTAAGCCAATCGACGAAAGGAGCGGTCAGGCGGGCGGGTAGGCACTACGTCGGTCAGAGA
644 TATGCCTAAGCCAACCGACG-AA--AGCGGACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGA
* *
18516239 GACGGGATGCACAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
706 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
** ** *
18516304 GTGTGCCAACACAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
771 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * ** **
18516369 TTTCATGGCAAGACGACTCGTTTTCGATTGTTCACGATTTTCAAAACTTTTTACGGTTCAAGATT
836 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
18516434 TTTGAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
18516498 TGGCATGCACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
18516563 AGTGTCCCCATTTCAGACACTTTAATGGCAACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * * *
18516628 TAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATA-GGGGCTAATATAAGGGCAAAGTATCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
18516692 CACCCATCGCACATCATGTGCGCACACCCCCTCCCGGCTCCCCCTATCG-CTGGAACCCCAATAC
261 CACCCATCGCACATCATGTGCGCACA-CCCC-CCCGGC-CCCCCGATCGTCCGGAACCCCAATGC
* * *
18516756 CGTCGGTCAGGTTCTCC-AGCGGTGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCA
323 CGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCA
* * *
18516820 GCACATGCCTAAGCCCACCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
387 GCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGT-CGATCTTAGACTGGGAAT
* * * * * *
18516885 GAACTCTGTATGCTTAGACTGGGAATGAACTCCGTCTGCCTAAGTCAAACCATGGAACGAGCATG
451 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
*
18516950 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-AGGGAT-GGATCGGGTCCCCCTCTG
516 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGG-CCGGGTCCCCCTCTG
* * * * * ** * * * **
18517013 TGTGTTGCCAATCTTGCTGCTGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCG
579 CGTGCTGCCGATCCTGCTACCACAACCCTTGGTCTGCTCCAATCTTAGACTGGGAATGAACTCCG
* * * * *
18517078 TATGCCTAAGCCAACCGATGAAA-CGAACGGGCGGGCAGGCAGGCACTACGTCGGCCAAAGAGAC
644 TATGCCTAAGCCAACCGACGAAAGCGGACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGAC
* * *
18517142 GGGATACGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATATTCATATTTCTGCA
709 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
18517207 TGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
774 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * ** *
18517272 CATGGCAGGACGACTTGTTTTCTATTTTTCATGATTTTCAAAAATTTTTACGGTTCGGGATT
839 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* * *
18517334 TTTTGAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
18517399 TGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
18517464 AGTGTCCCCATTTCAGACATTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
18517529 TAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * **
18517594 CACCCATTGTACATCATGTGCGCACACCCCCCCGGCCCCCCAATC-TCCGAAACCCCAATGCTAC
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCCGGAACCCCAATGCCGC
* ** ** *
18517658 CGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTATCCCGACGAAGAAAAATGCGGCACCAACAC
326 CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCAC
* * * *
18517723 ATGCCCGAGCCTAGCATGTG-TAGCTGCAACCCTCTGTCTGGCTCGATCGTAGACTGGGAATGAA
391 ATGCCCAAGCCCAGCATGTGCT-GCTGCAACCCTCGGTCTGG-TCGATCTTAGACTGGGAATGAA
*
18517787 CTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
454 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
** * *
18517852 GCGCTCAGCTTGCCAGAGGGGCGGGGATGCGCAAGCCGAGGATCAGCCGGGTCCCCCTCTGTGTG
519 GCGCTCAGCCGGCCAGAGGGGC-GGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTG
* * * * * *
18517917 TTGTCGATCCTACTACCGCAACCCTTGGTCTGATCCAATCTTAGATTGGGAATGAACT-CGTATG
583 CTGCCGATCCTGCTACCACAACCCTTGGTCTGCTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
18517981 CCTAAGCCAACCGATGAAACAAGCGGACGGGCGGGCGGGCGGGTACTACACCGGCTAGAAAGACG
648 CCTAAGCCAACCGACG--A-AAGCGGACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACG
* * ** * *
18518046 GGATGCGCAAGCCTTGGATCGATAGGGCGGTACATGGGTTTAGGCACATCCTCATATTTCTACAT
710 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
*
18518111 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTC
775 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
*
18518176 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
840 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* * * ** * *
18518237 TATTAAAATTTTTTTGAAAGGAGTTTTGGCCAAAAACTTGGTAGACGTGATCCTTTTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
18518302 TGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAGGTGTACAAGATTTTGTGACCATTTGAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAA
*
18518366 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCT
130 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
** *
18518431 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGCGAGGGGGCCAATATAAGGGCCAAGTGCCA
195 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* *
18518496 GCACCCATCGCACATCCTGTGCGCACACCCCCCCGGCCACCCCGATCGT-CAGAACCCCAATGCC
260 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC-CCCCGATCGTCCGGAACCCCAATGCC
**
18518560 GCCGGTCAGGTTCT---ACGA---T-----GATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGC
324 GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGC
* * *
18518614 ACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTAGTTCAATCTTAGACTGGGAATGA
389 ACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCT-GGTCGATCTTAGACTGGGAATGA
* * * * * *
18518679 ACTCTGTTTGCTCAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG
453 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * *
18518744 AGG-GCTCAGTCGACCAGAGGGGCAGGATGCCCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGT
518 -GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGT
* * * *
18518808 GCTGCCGATCCTGCTACTAC-ACCCTTGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTGT
582 GCTGCCGATCCTGCTACCACAACCCTTGGTCTGCTCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * *
18518872 GCCTAAGTCAACCGACGAAA-C-GA---GCGTGCGGGCGGGCACTACACCGGCCAGAGAGACGGG
647 GCCTAAGCCAACCGACGAAAGCGGACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGG
18518932 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
712 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
** *
18518997 CAATGCCATTTTTATATCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
777 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* ** *
18519062 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGATT
842 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
18519121 TTTTAAAATTTTTT-GGAAGGATTTTTGGCCCCAAACTTGATAGACGTGATCCTTGTATTTTTGT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
18519185 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
18519250 AGTGTCCCCATTTCAGACACTTGAATGGCTATTGGCAGAAAACCTGCAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
18519315 TAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
18519379 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCGTCCCGATCGT-CAGAACCCCAATGTCG
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCC-CCCCGATCGTCCGGAACCCCAATGCCG
* * * * *
18519443 CCGGTCACGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATTAA-AAGAAATACGGCACCAGC
325 CCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAA-AAATGCGGCACCAGC
18519507 ACATGCCCAAGCCCAGCATGTGCTG-TCGCAACCCTCGGTC-GGTCTGATCTTAGACTGGGAATG
389 ACATGCCCAAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCTGGTC-GATCTTAGACTGGGAATG
* * * * *
18519570 AACT-CGTATGCTTAGACTGGGAATCAACTCCATATACCTAAGTCAACACACAAAACGAGCGTGC
452 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * *
18519634 AGGCGCTCA----GTC-GA---GC---AT--------C--GG-T-TG--GGGTCCCCCTCTGCGT
517 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGT
* * * * *
18519674 GCTGCCGATCCTGCTGCCACAACCCTCT-GTCTGATCCGATCTTAGACTGGGAATGAAATTCGTA
582 GCTGCCGATCCTGCTACCACAACCCT-TGGTCTGCTCCAATCTTAGACTGGGAATGAACTCCGTA
* * ** * * *
18519738 TGCCTAAGCCAACCGACTAAACGAGCGGGCGGGCGATCGGGCGGGCACTACGTCGACCAGAGAGA
646 TGCCTAAGCCAACCGAC-GAA--AGCGGACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGA
* * *
18519803 CAGGATGCGCAAGCCGTGGATCGGTAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGC
708 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
18519868 ATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
773 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
18519933 TCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATT
838 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
** *
18519996 TTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
1 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
18520061 TGGCATGCACAAAAAACTTCAGCTAAAAACTCAAAGTGTACAAGATTTGGTGACCATTTGAAAAA
66 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
18520126 AGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * *
18520191 TAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGTGGGCCAACATAAGGGCAAAGTACCAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
18520256 CACCCATCGCACATCATGTGCGCATAGCCCCCCGACCCCCTGATCG-CCGGAACCCCAATGCCGC
261 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCCGGAACCCCAATGCCGC
* * *
18520320 CAGTCAGGTTCT-C--CGA--------CGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCGC
326 CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCAC
* * * *
18520374 ATTCTCGAGCCCAGCATGTGCTGC--CATAACC-C--T-T-G--G-TC-T--A----G--T---C
391 ATGCCCAAGCCCAGCATGTGCTGCTGCA-ACCCTCGGTCTGGTCGATCTTAGACTGGGAATGAAC
18520417 T--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
455 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * *
18520478 CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGGCCGGTTCTCCCTCTGCGTGCT
520 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCT
* * * *
18520543 GCCGATCCTGCTACCATAACCCTCT-GTGTGCTCCAATATTTGACTGGGAATGAACTCCGTATGC
585 GCCGATCCTGCTACCACAACCCT-TGGTCTGCTCCAATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18520607 GTAAGCCAACTGACGAAA-C-GA---GCGGGCGGGTAGGCACTATGCCGGCCAGAGAGACGGGAT
649 CTAAGCCAACCGACGAAAGCGGACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGAT
* * * ***
18520667 GCGCAAGCCGTGGATCGATAGGGTGGCAAGTGGGTTTCGGTGTATCTTCATATTTCTGCATGCCA
714 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
18520732 ATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
779 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
18520797 CAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTATGGTTCAGGATT
844 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
**
18520854 TTTTAAAATTTTTTCAAAAGGAGT
1 TTTTAAAATTTTTTCGGAAGGAGT
18520878 GCAAAGCTGT
Statistics
Matches: 8451, Mismatches: 1005, Indels: 569
0.84 0.10 0.06
Matches are distributed among these distances:
841 57 0.01
842 2 0.00
843 1 0.00
844 2 0.00
845 2 0.00
846 2 0.00
847 1 0.00
849 3 0.00
852 2 0.00
853 1 0.00
855 1 0.00
856 2 0.00
857 1 0.00
858 229 0.03
859 54 0.01
860 2 0.00
861 5 0.00
862 4 0.00
863 5 0.00
864 6 0.00
865 56 0.01
866 199 0.02
867 158 0.02
868 14 0.00
869 246 0.03
870 43 0.01
871 222 0.03
872 708 0.08
873 408 0.05
874 178 0.02
875 739 0.09
876 463 0.05
877 294 0.03
879 1 0.00
880 4 0.00
881 1 0.00
882 132 0.02
883 171 0.02
884 227 0.03
885 93 0.01
886 7 0.00
887 48 0.01
888 12 0.00
889 7 0.00
890 226 0.03
891 178 0.02
892 177 0.02
893 614 0.07
894 271 0.03
895 198 0.02
896 28 0.00
897 238 0.03
898 79 0.01
899 233 0.03
900 311 0.04
901 286 0.03
902 54 0.01
903 629 0.07
904 113 0.01
905 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCCGGAACCCCAATGCCGC
CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCAC
ATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCGATCTTAGACTGGGAATGAACT
CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTG
CCGATCCTGCTACCACAACCCTTGGTCTGCTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCGACGAAAGCGGACGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
Found at i:18521179 original size:26 final size:26
Alignment explanation
Indices: 18521150--18521202 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18521140 CCGGTCTAAT
* *
18521150 CTTAAACTGCGAATGAACTCCGTATG
1 CTTAAACTGCGAATAAACTCCATATG
* *
18521176 CTTAGACTGGGAATAAACTCCATATG
1 CTTAAACTGCGAATAAACTCCATATG
18521202 C
1 C
18521203 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAAACTGCGAATAAACTCCATATG
Found at i:18523615 original size:904 final size:902
Alignment explanation
Indices: 18520878--18523868 Score: 4257
Period size: 904 Copynumber: 3.3 Consensus size: 902
18520868 CAAAAGGAGT
* *
18520878 GCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * *
18520943 GTGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATGTGCGCACACCCCCACCCGG
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCC-CCGGG
* * * * * * *
18521008 CATCCCAGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGCTGATGGTG
130 C-CCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCCCCGGCGATGCTCCGGTGATGGTG
* * ** * * * *
18521073 CCGCAGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACTGCAACGCTCA
194 CCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
* * * *
18521138 GTCCGGTCTAATCTTAAACTGCGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCATATGC
259 GTCCGGTCTGATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* *
18521203 CTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCTGCC-AGCCAGAGGGGTAGGATGCGCAAGC
324 CTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGTAGGATGCGCAAGC
* * * * * *
18521267 CGGGGATC-AGTCGGGTCCCCCTCTGCGTGCTATCAATCCTGCTACCGTAACCC-TAGGTTTGGT
388 CGAGGATCGA-TCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTTA-G-TCGGT
* * * *
18521330 AC-AATCTTAGACTGGGAATGAACTCTGTATGAATAAGCCAGCCGACGAAACGAGCAGGTG-GGC
450 -CTGATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGC-GG-GCGGC
* * * * * * *
18521393 AGGCGGGCGAGCACTACGCTGACCAGAGAGACGGGAGGTGCAAGCCATGCATCGATGGGGTGGTA
512 GGGCGGGCGGGCACTACGCTGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
18521458 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTTTAAATTCAT
577 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCAT
*
18521523 ACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATG
642 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATG
* ** *
18521588 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGGTTTTTGGCCCCAAA
707 ATTTTTGAAACTTTTTACGGTTCGATATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAA
* * * *
18521653 CTTGGTGGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAACCTCAAAG
772 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAG
*
18521718 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTGC
837 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
18521783 A
902 A
*
18521784 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
18521849 GGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACACCCCCCC-GAC
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGGC
* * * * *
18521913 CCCTCCGATCACCGAAACCCCAATGCTGTCGATCAGGTTCTCCGGCGATGCTCTGGCGATGGTGC
131 CCC-CCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCCCCGGCGATGCTCCGGTGATGGTGC
** * * * *
18521978 CCCGGTGAAGAAAAATACGACACCAGCAAATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGG
195 CCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGG
* ** * *
18522043 TCTGGTCTGATCTTAGACTATGAATGAACTCCGTATGCTGAGACTGGGAATGAACTCCGTCTGCC
260 TCCGGTCTGATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** * * *
18522108 TAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCAGGA-TAGAGAGGTAGGATGCGCAAGCC
325 TAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC-CGACCAGAGGGGTAGGATGCGCAAGCC
** * * *
18522172 GAGGATCGGCCGGGACCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCAGTCTGA
389 GAGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTTAGTCGGTCTGA
* *
18522237 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGTGG
454 TCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGCGG
*
18522302 ACGGGCACTACGTCTG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
518 GCGGGCACTACG-CTGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
18522366 GTTTAGGCACATCTTCATAGTTCTACATGCCAATGAAATTTTTATGGCTTGTAAATTCATACAAT
582 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAAT
* * *
18522431 GGTCCCTTAAGCCTTCAGGTGAAGTTTCAGGGCAAGACGACTCATTTTTTATTTTTCACGATTTT
647 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTT
* * * ** *
18522496 TGAAACTTTTTACGGTTC-TTGATTTTTTAAAATTTTTTCGTAAATAGTTTTGGCCCCAAACTTG
712 TGAAACTTTTTACGGTTCGAT-ATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTG
* *
18522560 GTAGACGTGATCCTTGTATTTTTTTTGGTATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTA
776 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
18522625 GAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTA
841 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
18522687 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
18522752 GGGGACCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGGC
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGGC
* * *
18522817 CCCCCGATCACCGGAACCCCAATGCCGTCGGTTAGGTTCCCCTGCGATGCTCCGGTGATGGTGCC
131 CCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCCCCGGCGATGCTCCGGTGATGGTGCC
* * *
18522882 CCGGCAAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGT
196 CCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGT
** * * * *
18522947 CCATTTTGATCTTAGACTGGGAATAAACTCCGTGTGCTTAGACTGGGAATGAACTCCGTATGCCT
261 CCGGTCTGATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* ** *
18523012 AAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGACCAGAGGGGGCGAGATGCGCAAGCCA
326 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTAG-GATGCGCAAGCCG
* * * * *
18523077 AGGATCGATCAGGTCCCCCTCTATGTGCTGCCGATCCAGCTGCCGCAACCCTTAGTCGGATCTGA
390 AGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTTAGTCGG-TCTGA
* *
18523142 TCTTAGACTAGGAATGAACTCCGTATGGCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGG
454 TCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCGG
* *
18523207 GCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATGGATAGGGTGGTAGGTGGA
518 GCGGGCACTACGCTGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG-
* *
18523272 G-TT-GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAAT
582 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAAT
* *
18523335 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
647 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTT
**
18523400 CAAAACGTTTTT-CGGTTCGATATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTG
712 TGAAAC-TTTTTACGGTTCGATATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTG
* * * *
18523464 GTAGACATCATCCTTTTA-TTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGT
776 GTAGACGTGATCCTTGTATTTTTTTTGGCATGC-AAAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
18523528 ACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTATTGGCTACTGGCA
840 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
18523591 GCAAACCTGTAAAATC-CGAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
1 GCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
18523655 AGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCAAACCCCCCCGGG
65 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGG
* * * * *
18523720 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTTAGGTTCCCCGGTGATACTCCGGTGATGGTGC
130 CCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCCCCGGCGATGCTCCGGTGATGGTGC
* * * *
18523785 CCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTCGT
195 CCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGG
*
18523850 TCC-GTTTCGATCTTAGACT
260 TCCGGTCT-GATCTTAGACT
18523869 CATTTTTTAT
Statistics
Matches: 1867, Mismatches: 196, Indels: 46
0.89 0.09 0.02
Matches are distributed among these distances:
901 1 0.00
902 7 0.00
903 746 0.40
904 859 0.46
905 133 0.07
906 121 0.06
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (902 bp):
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGGC
CCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCCCCGGCGATGCTCCGGTGATGGTGCC
CCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGT
CCGGTCTGATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTAGGATGCGCAAGCCGA
GGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTTAGTCGGTCTGATC
TTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGGCG
GGCACTACGCTGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAA
ACTTTTTACGGTTCGATATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
Found at i:18524309 original size:493 final size:492
Alignment explanation
Indices: 18523373--18524340 Score: 1469
Period size: 493 Copynumber: 2.0 Consensus size: 492
18523363 ATGGCAAGAC
* *
18523373 GACTCGTTTTCTATTTTTCATGATTTTCAAAACGTTTTTCGGTTCGATATTTTTTAAAATTTTTT
1 GACTCATTTTCTATTTTTCATGATTTTCAAAACGTTTTTCGGTTCGAGATTTTTTAAAATTTTTT
*
18523438 TGGAAGGATTTTTGGCCCCAAACTTGGTAGACATCATCCTTTTATTTTGTTGGCATGCAAAAAAA
66 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATCATCCTTTTATTTTGTTGGCATGCAAAAAAA
* *
18523503 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTC
131 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
18523568 AGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCCGAAATGCTCTTTAAGGAGGTGTGAG
196 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCGAAATGCTCTTTAAGGAGGTGTGAG
* * **
18523633 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACAT
261 TTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAAGGCCAAGTACCAACACCCATCGCACAT
* * *
18523698 CATGTGCGCAAACCCCCCCGGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTTAGGTTCCCC
326 CATGTGCGCAAACCCCCCCGGACCCCCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCCCC
** ** *
18523763 GGTGATACTCCGGTGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
391 GACGATACTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
*
18523828 CATGTGTTGCCGCAACCCTCGTTCCGTTTCGATCTTA
456 CATGTGCTGCCGCAACCCTCGTTCCGTTTCGATCTTA
* * *
18523865 GACTCATTTTTTATTTTTTATGATTTTCGAAAC-TTTTTGCGGTTCGAGATTTTTTAAAATTTTT
1 GACTCATTTTCTATTTTTCATGATTTTCAAAACGTTTTT-CGGTTCGAGATTTTTTAAAATTTTT
* * * * * *
18523929 TTGGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGC-ATA
65 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATCATCCTT-T-TATTTTGTTGGCATGCAAAA
18523993 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
128 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
18524058 TTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTG
193 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-CGAAATGCTCTTTAAGGAGGTG
*
18524122 TGAGTTCTCGAGGTTTGTTGAGGGATAGGGGACCAATATAAAGG-CAAGTACCAACACCCATCGC
257 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAAGGCCAAGTACCAACACCCATCGC
* * * *
18524186 ACATCATGTTCGCACACCCCCCAC-GACCCCCTCGATCGTCGGAACCCCAATGCTGTCGATCAGG
322 ACATCATGTGCGCAAACCCCCC-CGGACCCCC-CGATCGCCGGAACCCCAATGCCGTCGATCAGG
* * * * *
18524250 TTCTCCGACGATGCTCCGACGATGTTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGA
385 TTCCCCGACGATACTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGA
**
18524315 GCCCAGCATGTGCTGTTGCAACCCTC
450 GCCCAGCATGTGCTGCCGCAACCCTC
18524341 AGTCTGGTCC
Statistics
Matches: 428, Mismatches: 42, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
491 5 0.01
492 135 0.32
493 273 0.64
494 15 0.04
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (492 bp):
GACTCATTTTCTATTTTTCATGATTTTCAAAACGTTTTTCGGTTCGAGATTTTTTAAAATTTTTT
TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATCATCCTTTTATTTTGTTGGCATGCAAAAAAA
AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCGAAATGCTCTTTAAGGAGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAAGGCCAAGTACCAACACCCATCGCACAT
CATGTGCGCAAACCCCCCCGGACCCCCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCCCC
GACGATACTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCCTCGTTCCGTTTCGATCTTA
Found at i:18524383 original size:26 final size:26
Alignment explanation
Indices: 18524354--18524432 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
18524344 CTGGTCCACT
18524354 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18524380 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18524406 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18524432 C
1 C
18524433 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18525876 original size:741 final size:730
Alignment explanation
Indices: 18524415--18525882 Score: 2159
Period size: 741 Copynumber: 2.0 Consensus size: 730
18524405 GCTTAGACTG
* * *
18524415 GGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACAAGCGTGCGGCGCTCAGCCGGCCAGAGG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGCGCTCAACCGGCCAGAGG
** * * ** * * * *
18524480 GGTGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCAACTGCCGTA
66 GGCAGAATGCGCAAGCCAAGGATCGATCGGGTCCCCCTCTCCGTGCTACCAATCCAACTACCGCA
*
18524545 GCCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
131 ACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
18524610 GAACGGGTGGGCGGGCACTATGCCGGCCAGAGAGACGGATGCGCAAGCCGTGGATCGATAGGGTG
196 GAACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
18524675 GTAGGTTGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
261 GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
18524740 CATACAATGGTCCTTTAAGCCTTCACGTGATGTTTCATAGCAAGACGACTCGTTTTCTATTTTTC
326 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTC
** * *
18524805 ATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCC
391 ACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCAC
* *
18524870 AAACTTGGTAGACGTGATCCTTATATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCAA
456 AAACTTGGTAGACATGATCCTTATATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
* * * *
18524935 AGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTATTGGCTATTG
521 AGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
18525000 GCAGCAAACCTATAAAATCTCAGATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGATGAGGG
586 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGATGAGGC
** *
18525065 ATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGTACATCATCAACATACACCCCCCCA
651 ATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATCAACACACACCCCCCCA
18525130 GCCCCCCCGATCACC
716 GCCCCCCCGATCACC
*
18525145 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCTGGCGCTCAACCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGC-GGCGCTCAACCGGCCAGAG
* **
18525210 GGGCAGAATGCGCAAGCCAAGGATCGATCGGGTCCCCCTCTCCGTGCTGCCAATCCTGCTACCGC
65 GGGCAGAATGCGCAAGCCAAGGATCGATCGGGTCCCCCTCTCCGTGCTACCAATCCAACTACCGC
* * * * * *
18525275 AACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGATGAAA
130 AACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
18525340 C-AAGCGGGCGGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
195 CGAA-----C-GGGCGGGC--G--GGCACTACGCCGGCCAGAGAGAC-GGATGCGCAAGCCGTGG
18525404 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAT
249 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAT
* * * *
18525469 GGCTTGTAAATTCGTACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGT
314 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGT
* ** * *
18525534 TTTTTATTTTTCACAATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTGGGAAGG
379 TTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
18525599 A-TTATTGGCCATAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
444 AGTT-TTGGCCACAAACTTGGTAGACATGATCCTTATA-TTTTGTTGGCATGCACAAAAAAATTC
* * * *
18525663 AGTTCAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACAC
507 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACAC
* * * *
18525728 TTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
572 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGCGAGTTCTCG
* ***
18525793 AGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
637 AGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATCAA
* *
18525858 CGCACA-CCCCCTAGCCCCCCCGATC
702 CACACACCCCCCCAGCCCCCCCGATC
18525883 GTCGAAACCC
Statistics
Matches: 654, Mismatches: 70, Indels: 17
0.88 0.09 0.02
Matches are distributed among these distances:
730 44 0.07
731 129 0.20
735 1 0.00
736 7 0.01
738 1 0.00
740 24 0.04
741 244 0.37
742 204 0.31
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (730 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGCGCTCAACCGGCCAGAGG
GGCAGAATGCGCAAGCCAAGGATCGATCGGGTCCCCCTCTCCGTGCTACCAATCCAACTACCGCA
ACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTC
ACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCAC
AAACTTGGTAGACATGATCCTTATATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGATGAGGC
ATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATCAACACACACCCCCCCA
GCCCCCCCGATCACC
Found at i:18526052 original size:26 final size:26
Alignment explanation
Indices: 18526014--18526066 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18526004 CTGGTCCGAT
*
18526014 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCCTATG
*
18526040 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCCTATG
18526066 C
1 C
18526067 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATG
Found at i:18527786 original size:26 final size:26
Alignment explanation
Indices: 18527750--18527802 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18527740 CTTGTCCGAT
18527750 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
18527776 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18527802 C
1 C
18527803 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18528657 original size:26 final size:26
Alignment explanation
Indices: 18528628--18528680 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18528618 TCGGTCCGAT
18528628 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18528654 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18528680 C
1 C
18528681 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18529724 original size:8 final size:8
Alignment explanation
Indices: 18529711--18529741 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
18529701 AACGAAACGA
18529711 GCGGGCAG
1 GCGGGCAG
18529719 GCGGGCAG
1 GCGGGCAG
*
18529727 GCGGGCGG
1 GCGGGCAG
18529735 GCGGGCA
1 GCGGGCA
18529742 CTACGTCGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.26, G:0.65, T:0.00
Consensus pattern (8 bp):
GCGGGCAG
Found at i:18531547 original size:877 final size:875
Alignment explanation
Indices: 18526942--18534812 Score: 9399
Period size: 877 Copynumber: 9.0 Consensus size: 875
18526932 TATGCTGAAA
* * * * * **
18526942 CCAG-GGGGCGGGATGCACAAGGCAGGGATCGACCGGGTCCCCCTCTACGTGCTGCTAATCCTG-
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * * * * * *
18527005 TCGTCACAACCCTTAGTCCGGTGTGATCTTAGACTGGGAATAAACTCCGCATGCCTAAACCAATC
66 T-GCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * **
18527070 GATGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGTCGCCCAGAGGGATAGGATGCGCAAGC
130 GACGAAACGAGCGGGCGGGCGGG--GGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGC
*
18527135 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATT
193 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-T
* * *
18527200 TTTTATGGTTTGTAAATTCATACAATAGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACG
257 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
18527265 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACT-GTTCGAGATTTTTTAAAATTTTTT
322 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA-TGGTTCGGGATTTTTTAAAATTTTTT
* * ** *
18527329 -GGAGGGAGTTTTGGCCCCAAACTTGGTGGTTGTGATCCCTGTATTTTTGTTGGCATGCACAAAA
386 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18527393 AAATTCAGCTAAAAACTCCAAGTGCACAAGATTTTGTGACCA-TTGAAAAAAGTGTCCCCATTTC
451 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
18527457 GGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTCTAAGGGGGTGTGAG
516 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
18527522 CTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGGCAAGTACCAGCACCCATCGTACAT
581 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
18527587 CATGTGCGTACACCACCCCGGCCCCTCCGATCGCCGGAACCCCAAT-TCCGTCGATCAGGTTCTC
646 CATGTGCGCACACC-CCCCGGCCCC-CCGATCGTCGGAACCCCAATGT-CGCCGGTCAGGTTCTC
* ** * * * ** * *
18527651 TGACGATTCTCC-AGTGATGTTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
708 CGGTGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCC
* * *
18527715 AGCATGTGCTACCGCAACCCTTGGTCTTGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTA
772 AGCATGTGCTGCCGCAACCCTCGGTC----CAGATC-----C--------AA--C------CTTA
** *
18527780 GACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGG
812 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGG
* * * * * * * *
18527844 CCAAAGGGGCGGGATCCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTGCTTGCTGCTGATCCTAC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
** * * * * * *
18527909 TGCTACAAACCTCGGTCTGATCCGATCTTAGACTGGAAATGAACTTCGTATGCCTAAGCCAACCG
66 TGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* *
18527974 ACGAAACGA----GCGGGC--GGG-GGGCACTACG-CCAGCCAGAGAGACGGG-TGCACAAGCCG
131 ACGAAACGAGCGGGCGGGCGGGGGCGGGCACTACGTCGA-CCAGAGAGACGGGATGCGCAAGCCG
18528030 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA---TC----TT-T--AT----ATGCCATTTT
195 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
18528081 TGTGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
260 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * **
18528146 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTTGA
325 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * *
18528211 AGGAGTTTTGGCCCCAAACATGGTAGACGTTATCCTTGTATTTTTCTTGGCATGCACAAAAAAAT
390 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
18528276 TCAGCTAAAAACTCGAAATGTATAAGATTTTGTGACCATTTGAAAAAAATGTCCCTATTTCAGAC
455 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
18528341 ACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
520 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
18528406 TGAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
585 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
18528471 TGTGCACACCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGAT
650 TGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGAT
* * * * * * * *
18528536 GCTTCGATGATGGTGGCTCGGCGAAGAAAAATGCAGCACCAGCACATGCTTGAGCCCAACATGTG
715 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTG
**
18528601 CTGTTGCAACCCTCAGTTCGGTCC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
780 CTGCCGCAA-CC-C---TCGGTCCAGATC-----C--------AA---C-----CTTAGACTGGG
* * *
18528665 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCTGG
819 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGG
* * **** * *
18528722 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCTGGGTATAACTCTGCATGCTGCCGATCCTAC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * ** * ***
18528787 TGTCGGAACCCTCGGTCTGGTCAAATCTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAATTA
66 TGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * ** * *
18528851 ACGAAACGAACGGGCAGGCGGGCGGGTGGGCACTACACCGGCCTGAG-GACGGGATGCGCAAGCC
131 ACGAAACGAGCGGGCGGGC-GG-GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCC
* * * * * * *
18528915 ATGGATAGATAGGGTGGTTGTTGGGTTTAGGCACATCTTCATATTTCTACGTGCCGATGCCATTT
194 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
18528980 TTATGGCTTGTAAATTCACACAACGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGATGAC
259 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
18529045 TCATTTTCTATTTTTCATGATTTTTGAAAGTTTTTGTGGTTCGGGATTTTTTAAGATTTTTTCGG
324 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
18529110 AAGGATTTTTGGTCCCAAGCTTGGTATACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAGA
389 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
18529175 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCCA-TTCAG
454 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCCATTTCAG
18529239 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
518 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
18529304 TTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCA
583 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * ** * *
18529369 TGTGCGCACACCCCCCATGGCCCCTCGATCGCCGGAACCTTAA--T-GCC-GT-A---TGTCAGG
648 TGTGCGCACACCCCCC--GGCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGG
* * * * * * *
18529426 T--T-CTCCGGCGATGGTTCCCTGGCGAAGAAAAATACGGCACCAGCACATACCCGAGCCCAGCA
711 TGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCA
* * * **
18529488 TGTGTTGCCACAACCCTCGGTCC-GGTCCAATGTTAGACTGGGAATGAACTCCGTATGCCTAA--
776 TGTGCTGCCGCAACCCTCGGTCCAGATCCAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
18529550 -AACCCATGAAATGAGCGTGCGGGCGCTCAGCCGA
841 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGG
* * * * * *
18529584 CCAGAGGGGCGGAATGCGCAAGTCGAGGATCGACCAGGT-ACCC-CT-C-TG-T---G----TGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * ** * **
18529637 TGCCGTAACCCTCGGTCCGATCAAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACTA
66 TGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
18529702 ACGAAACGAGCGGGCAGGCGGGCAGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATG
131 ACGAAACGAGC--G--GGC--G--GGC-GG-GGGCGGGCACTACGTCGACCAGAGAGACGGGATG
*
18529767 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAA
186 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
18529832 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTTATGGC
251 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
** * *
18529897 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTCAAAT
316 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAAT
* * *
18529962 TTTTTCGGAAGGAG-TTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTCG-ATGCA
381 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
18530025 CAGAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
446 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
18530090 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
511 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * * * *
18530155 GTGAGTTCTCGAGGTTTGACGAGGCATAGGGGGCAAATATAAGGGCTATGTACCAGCACCCATCA
576 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
18530220 CACATCATGTGCGCACACCCCCCCGGGCCCCCGATTGTCGGAACCCCAATGTCGTCGGTCAGGTT
641 CACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTT
* * * *
18530285 CTCCGGTGATGCTCTGCCGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCTCGAGC
705 CTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGC
* * * *
18530350 CTAGCATGTGCTGCCGCAACCCTCGGTCCA-ATCCGACCTTAGACTAGGAACGAACTCCGTATGC
770 CCAGCATGTGCTGCCGCAACCCTCGGTCCAGATCCAACCTTAGACTGGGAATGAACTCCGTATGC
*
18530414 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
835 CTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGG
* * * * * * * *
18530455 CAAGAGGGACGGGTTGCGGAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * *
18530520 TGCCGCAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTG
66 TGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * *** * *
18530585 ACGAAATGAGCGGGGGGGGCAGGGTATGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCC
131 ACGAAACGAGC-GGGCGGGC-GGGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCC
* * * *
18530650 GAGGATCGATAGGATGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTT
194 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
18530715 TTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACATGAAGTTTTATGGCAAGACGAC
259 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
18530780 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGG
324 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * *
18530845 AAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTTTTTTTTTTGGGATGCACAAAAAAA
389 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
18530910 TTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
454 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
18530975 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTC
519 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * ** * *
18531040 TCGAGGTTTGACGAGGCATAGGGGGTAAATATAAGGGCCATGTACCAGCACCCATCACACATCAT
584 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
18531105 GTGCGCACACCCTCCCTGGGCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAAGTTCTCCGGT
649 GTGCGCACACCC-CCC-GGCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGT
** * *
18531170 GATGCTCCGACGATGGTGCGTCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCAT
712 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCAT
* *
18531235 GTGCTGCCGTAACCCTCGGTCCAG-TCTAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
777 GTGCTGCCGCAACCCTCGGTCCAGATCCAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* *
18531299 AACCCACGAAACGAGCGTGCGGGCACTCAACCGA
842 AACCCACGAAACGAGCGTGCGGGCACTCAGCCGG
* * * * *
18531333 CCAGAGAGCCAGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* ** * * *
18531398 TACCGTGACCCTCAGTTTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCCACCG
66 TGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* ** * *
18531463 ACGAAACGAGCGGGGGGGCGGGGTATGGGCACTACGCCGACCAGAGAGACGGGATACGCAAGCCG
131 ACGAAACGAGCGGGCGGGCGGGG-GCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCG
*
18531528 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTT
195 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
18531593 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
260 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* **
18531658 CATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
325 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * *
18531723 AGGAGTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTTTTGGCATACACAGAAAAAT
390 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
18531788 TCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCGCTTTTCAGAC
455 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
18531853 ACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
520 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
** ** *
18531918 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTTCCAAGTACCAGCAGGCATTGCACATCATG
585 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * ** * * * **
18531983 TGCGCACACCCCCCGACCCCCCCGATCGCCGGAACCGTAATGCCGTCGGTAAGGTTCTCCGACGA
650 TGCGCACACCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGA
* * * **
18532048 TGCTCCAACGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAATATGT
714 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
* ** * * *
18532113 GCTGTCGCAACCCTCGGTCC-GGGCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
779 GCTGCCGCAACCCTCGGTCCAGATCCAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
18532177 CCTACGAAACGAGCGTGCGGGCAGTCAGCCGG
844 CCCACGAAACGAGCGTGCGGGCACTCAGCCGG
* * * * * *
18532209 CCCGAAGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTTTGCGTGCTGCTGATCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
**
18532274 TGCCGCAACCCTCAGTCCAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
66 TGCCGCAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
18532338 GATGAAACAAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGGCGAGAGAGACGGGATGCGAAAGC
130 GACGAAACGAGCGGGCGGGC-GG-GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGC
* * *** *
18532403 CGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTACATATTTCTATGTGCCAATGCCTTT
193 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* **
18532468 TTTATGGCTTGTAAATTGATACAATCATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
258 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
18532533 CTCGTTTTCTATTTTTCATGATTTTTGAAA-TTTTT-TGCGATTCGGGATTTTTTAAAATTTTTT
323 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATG-G-TTCGGGATTTTTTAAAATTTTTT
* * * * * * *
18532596 CGGAAGGAGTTTTGGCCCCGAAGTTGGTAGACATCATCCCTGTATTTTTTTTGGCATGGACAAAA
386 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
18532661 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTT
451 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
18532726 AGACACTTTAATGGTTATTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTATGGGGGTGTGAG
516 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
18532791 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCACACAT
581 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18532856 CATGTGCAGACACCCCCCCCCCGGCCTCCCCAATCGTCGGAACCTCAATGTCGCCGGTCAGGTTC
646 CATGTGC-G-CA--CACCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTC
** * * *
18532921 TCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCAACAGCAAATGCTCGAGCC
706 TCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCC
* *
18532986 CAGCATGTGTTGTCGCAACCCTCGGTCCAAGCCGATCTTAGACTACGAATGAACTCCGTATGCTT
771 CAGCATGTGCTGCCGCAACCCTCGGTCC-A---GA---T---C--C-----AA---C-----CTT
* ** * *
18533051 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTAAAAAACGAGCGTGCGGGCGCTCAGTCGG
811 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGG
* * * * *
18533116 CCAGAGGGGCGGGATGCGCAAGCTGGGGAGCGGTCGGTTCCCCCTCTGCGTGTTGCCGATCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
** * * *
18533181 TGCTACAACCCTCGGTCCGGT-TCGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACC
66 TGCCGCAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
18533245 GATGAAACGAGTGGGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGCATGCGCAAGC
130 GACGAAACGAGCGGGCGGGC-GG-GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGC
* *
18533310 CGTGGATCGATCGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTGCATGCCAATGCCATT
193 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
18533375 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
258 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* **
18533440 CTCGTTTTCTTTTTTTCATGATTTTTGAAACTTTTTATGGTTCGAAATTTTTTAAAATTATTTT-
323 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATT-TTTTC
* * * *
18533504 GGAAGGTGTTTTGGCCCCAAA-TTGATAGACCTGATCCTTGTATTTTTGTTGGCCTGCACAAAAA
387 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
18533568 AATTTTAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTC
452 AA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
18533633 AGAC-GTTTAACGGCTACTGGTAGCAAA-CTGTTAAAATTCTCAAATGTTCTTTAAGGGGGTGTG
516 AGACACTTTAATGGCTACTGGCAGCAAACCTG-TAAAA-TCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
18533696 AGTTCTTGAAGTTTGATGAGGGATAGGGCGCCGATATAAGGGCCAAGTACCAGCACCCATCGCAC
579 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * **
18533761 ATCATGTGTGCAC-CCCTCCGGCCCCACCGATCGTCGGAACCCAAATACCGCCGGTCAGGTTCTC
644 ATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTC
*** ** * * * *
18533825 CGACAATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACACGCCCGAGCCCG
708 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCA
* ** * * *
18533890 GCATGTTCTATCGTAACCCTCGATCC-GATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
773 GCATGTGCTGCCGCAACCCTCGGTCCAGATCCAACCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
18533954 AGTTAACCCATGAAACGAGCGTGCGGGCACTCAACCGG
838 AGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGG
* * * * * * *
18533992 CCAGACGGGTGTGATGCGTAAGTC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * *
18534056 TGTCACAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCAACCG
66 TGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
18534121 ACGGAACGAGCGAGCGGGC--GGGCGGGCACTGCGTCGGCCAGAGAAACGGGATGCGCAAGCCGT
131 ACGAAACGAGCGGGCGGGCGGGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGT
* *
18534184 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTTTGCATGCCAATGCCATTTTT
196 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * * *
18534249 ATGGCTTGTAAATTCATATAATGGTCCCTCAAGCCTTCACATGAAGTTTCATGGGAAGACGACTC
261 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * ** * *
18534314 ATTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTAGGATTTGTTAAAATTTTTTCGAAA
326 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * ** * * *
18534379 GAATTTTTCACCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATACAAAAAAAAAAT
391 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAAT
* * * *
18534444 TCAGCTAAAAACTCGAAGTGTACAGGATTCTGTGACCATTTGAAAAGAGTGTTCCCATTTCAGAC
455 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
18534509 ACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCT
520 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
18534574 CGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCCCCCATCACACATCATG
585 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
18534639 TGCGCACACCCCCTGGCCCCCCCGATCGTCAGAA-CCCTA-GT-GCC-GCCA-G---TCAGGT--
650 TGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGA
* * ** * * * *
18534694 T-CTCCGGCGATGGTGCCTCGGTGAAGAAAAATGCGACACCAGCACGTGCCCGAGCCCAACATGT
714 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
* * * * *
18534758 GCTGCCGTAGCCCTCGGT-CTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
779 GCTGCCGCAACCCTCGGTCCAGATCCAACCTTAGACTGGGAATGAACTCCGTATGC
18534813 TTAGACTGGG
Statistics
Matches: 6091, Mismatches: 737, Indels: 322
0.85 0.10 0.05
Matches are distributed among these distances:
850 30 0.00
851 39 0.01
853 1 0.00
854 1 0.00
855 3 0.00
857 25 0.00
858 201 0.03
859 72 0.01
860 201 0.03
861 4 0.00
862 164 0.03
863 1 0.00
865 39 0.01
867 1 0.00
868 105 0.02
869 3 0.00
870 7 0.00
871 282 0.05
872 190 0.03
873 54 0.01
874 8 0.00
875 342 0.06
876 446 0.07
877 1172 0.19
878 701 0.12
879 116 0.02
880 157 0.03
881 129 0.02
882 2 0.00
883 76 0.01
884 2 0.00
885 10 0.00
886 67 0.01
887 1 0.00
889 4 0.00
890 4 0.00
891 57 0.01
892 2 0.00
893 47 0.01
894 29 0.00
895 2 0.00
896 1 0.00
897 4 0.00
898 2 0.00
899 9 0.00
900 380 0.06
901 6 0.00
902 141 0.02
903 105 0.02
904 1 0.00
905 5 0.00
906 61 0.01
907 567 0.09
908 10 0.00
909 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
TGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGCGGGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCCAGATCCAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCACTCAGCCGG
Found at i:18533061 original size:26 final size:26
Alignment explanation
Indices: 18533022--18533074 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18533012 CCAAGCCGAT
18533022 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
**
18533048 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
18533074 C
1 C
18533075 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:18534815 original size:26 final size:26
Alignment explanation
Indices: 18534786--18534838 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18534776 CTGATCCGAT
18534786 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18534812 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18534838 C
1 C
18534839 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18536443 original size:26 final size:26
Alignment explanation
Indices: 18536403--18536455 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18536393 CCGGTCTGAT
* * *
18536403 CTTAGACTGGTAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18536429 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18536455 C
1 C
18536456 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18537715 original size:864 final size:864
Alignment explanation
Indices: 18534818--18538406 Score: 4358
Period size: 864 Copynumber: 4.1 Consensus size: 864
18534808 TATGCTTAGA
* **
18534818 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAAGCGGGCG-GTC-AGG
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGCG-CGA-G
* * * * *
18534881 CACTAC-GCCGGCCAGAGAGACGGGATGCGTAAGTCGTGGATCGATACGGTGGTAGGTGGGTTTA
64 CACTACAG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTA
*
18534945 GGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
128 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
18535010 CTTAAGCCTTCACGTGAAG-TTCATGGCAAGACAACTCATTTTTTATTTTTC-CTGATTTTTGAA
193 CTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC-GATTTTTAAA
* * *
18535073 ACTTTTTACGGTTCTGGATTTTTGAAAATTTTTTTCG-AAGGAGTTTTGGCCCCAGACTTGGTAG
257 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
18535137 ACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
321 ACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
* *
18535202 ATTTTGT-ATCCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAAC
386 ATTTTGTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
18535266 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
450 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATA-GGGGC
**
18535331 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTAGCCCCCTCGA
514 CAATATAAGGGCCAAGTACCAG----CA---CAC--CA--TGCGCACACCCCCCGGCCCCCTCGA
* *** *
18535396 TCGTCGGAACCCCAATGCCGTTGGTCAGGTT-TCTCGGCGATGCTCCGGCGATGGTGCCCCGACG
568 TCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTC-CGGCGATGCTCCGGCGATGGTACCCCGACG
* * * * *
18535460 AAGAAATATGCGGCACCAGCACATGCTCGAGCCCAGCATGTACTGCCGTAACCCTTGATCCGATC
632 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATC
* *
18535525 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATAAAACAAGCGTGCGGGCGCT
697 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACAAAACGAGCGTGCGGGCGCT
* ** * * *
18535590 CAGCCGGCCAGAGGGGCAGAATGTGCAAGCCAGAGATCGGTCGGGTCGCCCTCTACATGCTGCCA
762 CAGCCGGCCAAAGGGGCAG-ATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCCA
* * *
18535655 ATCCTGTTGCAGCAGCCCTTGGTCCGATCTGATCTTGGT
826 ATCCTGCTGCAGCAGCCCTCGGTCCGGTCTGATCTTGGT
* * * * * *
18535694 CTGGGAATGAACTCGGTATGCCTAAGCCCACTGACGAAATCACGAGCGGGTC-GGTGGGCGTGCG
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--ACGAGAGGG-CGGGCGGGCGCGCG
* * * *
18535758 GGCACTACCGGACAGCCAGAGAGGACGGGATGCGCAAGCCGTGGATCGGATAGGGCGACAGGTGG
62 AGCACTA-CAG-CGGCCAGAGA-GACGGGATGCGCAAGCCGTGGATC-GATAGGGCGGCAGGTGG
* *
18535823 GTTTAGGGCAACATCTTCATATTTCTGCATGCCAATGCCATTTTCCATGGCTTGTAAA-TCATAG
123 GTTTA-GGC-ACATCTTCATATTTCTGCATGCCAATGCCATTTT-TATGGCTTGTAAATTCATAC
* *
18535887 AATGGTCCCCTAAGCCTTCACGTTGAAGTTTTCCATGGCAAGACGACTCGTTTTCTAATTTTTCA
185 AATGGTCCCTTAAGCCTTCACGTT-AAG-TTT-CATGGCAAGACGACTCATTTTCT-ATTTTTCA
* * * * **
18535952 CGATTTTTGAAACTTTTTGC-GTTCAGAATTTTTTTTAAAA-TTTTTTGGAA-GCTTTTTGGCCC
246 CGATTTTTAAAACTTTTTACGGTTCAGGA--TTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCC
* * * *
18536014 AAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCGTGCATAAAAAAATTCAGCTAAAAACTC
309 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTC
*
18536079 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTAC
374 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * * * *
18536144 TGGTAGCAAACTTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGCTCTAGAGGTTTGATGAG
439 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAG
*
18536209 GGATAGGGGCCAATATAAAGGCCAAGTACCAGCACCCATTGCACATCATGGGCGCACACCCCCCG
504 GGATAGGGGCCAATATAAGGGCCAAGTACCAG----CA---CAC--CAT--GCGCACACCCCCCG
* * * *
18536274 GCCCGCC-CGATTGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGGC-A---
558 GCCC-CCTCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGG
* * * *
18536334 -A-----A-GAA-AAATAT--GGCACCAACACATGCCCAAGCCTAGCATGTGCTGCCGCAACCCT
622 TACCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
18536389 TGGTCCGGTCTGATCTTAGACTGGTAATGAACTTCGTATGCTTACACTGGGAATGAACTCCGTAT
687 TGGT-C---C-GATC-----C--G--AT---C-T--TA-G-----ACTGGGAATGAACTCCGTAT
* * * * ** ** * *
18536454 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCAACCAAAACGACAGGATGCGCAAG
726 GCTTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCA-GATACGCAAG
* * * * * * **
18536519 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCCGCCGCAACCCTCAATCCGGTC
790 CCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCCAATCCTGCTGCAGCAGCCCTCGGTCCGGTC
* * *
18536584 TAATCTTAGA
855 TGATCTTGGT
*
18536594 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC--GA--GCGGGC-GG-GCG-G-GCA
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGCGCGAGCA
* * * * * *
18536651 CTACACCTGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTAGGTTTAGGC
66 CTACAGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGC
* * *
18536716 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATAGTCCCTT
131 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
18536781 AAGCCTTCACGTTAAGTTTAATGGCAAGACGACTCTTTTTCTATTTTTCACGATTTTCAAAACTT
196 AAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTT
* *
18536846 TTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACATGGTAGACATG
261 TTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
18536911 ATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
326 ATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
* * *
18536976 TTGACCATTTGAAAAAAGTGTCCCCATGTCAGGCACTTTAATGGCTACTGGCAGCAAACCTGTAA
391 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
18537041 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATAT
456 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATA-GGGGCCAATAT
*
18537106 AAGGGCCAAGTACCAGCAC-CCAT-CGCACACCCCCCGGCCCCCTCGATCGCCTGAACCCCAATG
520 AAGGGCCAAGTACCAGCACACCATGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATG
* * ** * *
18537169 CCGCCAATCAGGTTCTTCGGCGATGCTTTGGCGATGGTACCCCGACGAAGAAAAATGCGACACTA
585 CCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTACCCCGACGAAGAAAAATGCGGCACCA
* * * *
18537234 GCACATGCTCGAGCCCAGCATGTGTTGCTGTAACCCTTGGTCCGATCCGATCTTAGACTGGGAAT
650 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAAT
18537299 GAACTCCGTATGCTTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCG
715 GAACTCCGTATGCTTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGC-
** * **
18537364 AGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCTGATCCTGCTACAATAGCCC
779 AGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCCAATCCTGCTGCAGCAGCCC
*
18537429 TCGGTCTGGTCTGATCTTGGT
844 TCGGTCCGGTCTGATCTTGGT
** *
18537450 CTGGGAATGAACTCCGTATGCCTAATTCAACCGACGAAATGAGAGGGCGGGCGGGCGCGCGAGCA
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGCGCGAGCA
*
18537515 CTACAGCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGC
66 CTACAGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGC
*
18537580 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTT
131 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
18537645 AAGGCTTCACGTTAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCATGATTTTTAAAACTT
196 AAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTT
* **
18537710 TTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTCACCCCAAACTTGGTAGACGTG
261 TTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
18537775 ATCCCTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
326 ATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
* *
18537840 TTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
391 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
18537905 AATCTCAAATGCTCCTTAAGGGGGTGTGGGTTCTCGAGGTTCGATGAGGGATAGGGGCCAATATA
456 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGCCAATATA
*
18537970 AGGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCG
521 AGGGCCAAGT------A-CCA--GCACACCA--TGCGCACA-CCCCCCGGCCCCCTCGATCGCCG
* * * *
18538035 GAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCTGTGATGGTGCCCCGACGAAGAAAA
574 GAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTACCCCGACGAAGAAAA
* * * *
18538100 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTTGGTCCGGTCCGATCTT
639 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATCCGATCTT
* * * *
18538165 AGATTGGGAATGAACTCCGTATGCTTAAGTCAACCCAGAAAACGAGTGTGCGGGCGCTCAGTCGG
704 AGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * ** *
18538230 CCAGAGGGGCGGGATACGCAAGCCGAGGATCGATC-GGTTCCCCTCTACGTGCTGCTGATCCTAC
769 CCAAAGGGGC-AGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCCAATCCTGC
*
18538294 TGTAGCAGCCCTCGGTCCGGTCTGATCTTGGT
833 TGCAGCAGCCCTCGGTCCGGTCTGATCTTGGT
* * * * * * *
18538326 CTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAGCGGGCAGACGGGCGTGCGGGCA
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGCGCGAGCA
*
18538391 CTACACCGGCCAGAGA
66 CTACAGCGGCCAGAGA
18538407 TGTGTACAAG
Statistics
Matches: 2356, Mismatches: 259, Indels: 196
0.84 0.09 0.07
Matches are distributed among these distances:
856 167 0.07
857 1 0.00
858 2 0.00
860 6 0.00
861 3 0.00
862 5 0.00
863 23 0.01
864 420 0.18
865 1 0.00
867 2 0.00
868 65 0.03
869 2 0.00
870 4 0.00
871 3 0.00
872 5 0.00
873 5 0.00
874 42 0.02
875 2 0.00
876 167 0.07
877 240 0.10
878 14 0.01
879 63 0.03
880 228 0.10
881 40 0.02
882 75 0.03
883 78 0.03
884 7 0.00
885 78 0.03
886 40 0.02
887 10 0.00
888 105 0.04
889 229 0.10
890 35 0.01
891 13 0.01
892 4 0.00
893 3 0.00
894 2 0.00
895 2 0.00
897 2 0.00
899 2 0.00
900 160 0.07
901 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (864 bp):
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGCGCGAGCA
CTACAGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTT
TTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGCCAATATA
AGGGCCAAGTACCAGCACACCATGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGC
CGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTACCCCGACGAAGAAAAATGCGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATG
AACTCCGTATGCTTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAG
ATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGCCAATCCTGCTGCAGCAGCCCTC
GGTCCGGTCTGATCTTGGT
Found at i:18538780 original size:26 final size:26
Alignment explanation
Indices: 18538744--18538796 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18538734 CCAGTCGGAT
18538744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18538770 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18538796 C
1 C
18538797 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18539668 original size:26 final size:26
Alignment explanation
Indices: 18539632--18539682 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18539622 CAGTCCAATC
* * *
18539632 TTAGATTGGGAATGAACTTCGTATGG
1 TTAGACTGGGAACGAACTCCGTATGG
18539658 TTAGACTGGGAACGAACTCCGTATG
1 TTAGACTGGGAACGAACTCCGTATG
18539683 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAACGAACTCCGTATGG
Found at i:18540550 original size:26 final size:26
Alignment explanation
Indices: 18540521--18540573 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18540511 CTGGTCCGAT
*
18540521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
18540547 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
18540573 C
1 C
18540574 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:18541455 original size:26 final size:26
Alignment explanation
Indices: 18541415--18541467 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18541405 CCAGTCTAAT
*
18541415 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
18541441 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18541467 C
1 C
18541468 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18542330 original size:26 final size:26
Alignment explanation
Indices: 18542301--18542353 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18542291 CTGATCCGAT
*
18542301 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18542327 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18542353 C
1 C
18542354 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18543246 original size:26 final size:26
Alignment explanation
Indices: 18543195--18543247 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18543185 CCAGTCCGAT
* *
18543195 CTTAGACTGGGAATGGACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18543221 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18543247 C
1 C
18543248 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18544129 original size:26 final size:26
Alignment explanation
Indices: 18544093--18544143 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18544083 CCAGTACAAT
* *
18544093 CTTAGGCTGGGAACGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
18544119 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAACGAACTCCGTAT
18544144 ACCTAAGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:18545291 original size:900 final size:900
Alignment explanation
Indices: 18538408--18552202 Score: 17748
Period size: 894 Copynumber: 15.5 Consensus size: 900
18538398 GGCCAGAGAT
* * * * *
18538408 GTGTACAAGATTTTATGGCCATTTGAAAAAGGTGTCCCCATTTTAGACACTTTACTGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
18538473 CAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
18538538 TAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGC
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * *
18538603 CCCTCCAATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
196 CCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGC
* * * * * *
18538668 CCTGACGAAGAAAAATTCGGCACCAACACATGCCCGAGCCCAACATGTGCTGCCGTAAGCCTCGG
260 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
*
18538733 TCCAGTCGGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
325 TCCA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
18538798 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAATCCC
389 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * ** * *
18538863 GAGATCGGTCGGGTGCCCCTCTGCGTGCTACCTATCCTACTATCACAACCCTTGGTTTGGTCTGA
454 GGGATCGGTCGGGT-CCCCTCTACGTGCTGCCGATCCGACTGCCGCAACCCTTGGTCTGGTCTGA
* * *
18538928 TCTTAG-CTGGGAATGAACTCCGTATACCTCAGCCAACCGATGAAACGAGCGGGC--G-GGG-GG
518 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGG
* * * *
18538988 TCGGGCACTACGCCGACCAGAAAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGG
583 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
18539053 TTTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATG
648 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
18539118 GTCCCTTAAGCCTTCACGTGATGTTTAATGGCAAGACGACTCATTTTGTATTTTTCACGATTTTT
713 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** * *
18539183 GAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATCGT
778 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
18539248 AGACATGATCCATCTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAA
843 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18539306 GTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * * *
18539371 CAACAAACCTGAAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
18539436 TAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-
* * * * * * *
18539501 CCCCCCGATCGCCGGAAACTCAAAGCCG-C---CA-----ATC-A-GGTTCTCCGGCGATGGTGC
195 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGC
* * * * * *
18539555 CCCGACGAAGAAAAATGCGGCACTAGTACATGCTCGAGCCTAGCTTATGCTGCCGCAACCCTCGG
260 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * *
18539620 TCCAGTCCAATCTTAGATTGGGAATGAACTTCGTATGGTTAGACTGGGAACGAACTCCGTATGCC
325 TCCA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* *
18539685 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCG
389 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * **
18539750 GGGATCGGCCGGGTCCCCCTCTATGTTCTATCGATCCTG-CTGCCGCAACCCTCT-GTC-GGATC
454 GGGATCGGTCGGGT-CCCCTCTACGTGCTGCCGATCC-GACTGCCGCAACCCT-TGGTCTGG-TC
* * * *
18539812 TAATCTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAACCGATGAAACGAGC--G--GGTGGG
515 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGG
*
18539873 CGGGCGGGCACTACGCCGGCCAGGGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
580 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
18539938 GGGTTTAGGCACATCTTCATATTTCTGCATGCCTATGCCATTTTTATGGCTTGTAAATTCTTACA
645 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
18540003 ATAGTCCCTTAAGCCCTCACGTGAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTTCATGAT
710 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCACGAT
* * * *
18540068 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACT
774 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * * *
18540133 TGGAAGACATGATCCCTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAA
839 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
18540195 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18540260 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTTGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
** **
18540325 TAGGGCACCAACGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCG
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CG
*
18540390 GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTC-TC--C-A-------GCGATGGTG
194 GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTG
** * *
18540444 CCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCGCACCCCTCG
259 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
** * *
18540509 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAATCTGTATGC
324 GTC-CATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18540574 CTAAGTAAACCCACAAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
388 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * ** * * *
18540639 GAGGATCGATCGGATCCCCCTCGATGTGCTATCGATCCTACTACCGCAACCCTCT-GTCTGGTCC
453 GGGGATCGGTCGGGT-CCCCTCTACGTGCTGCCGATCCGACTGCCGCAACCCT-TGGTCTGGTCT
* * * **
18540703 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGTTGGC
516 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGC
* * *
18540768 GGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
581 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** *
18540833 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAA
646 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
18540898 TGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
711 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * *
18540963 TCAAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTT
776 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTT
* *
18541027 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAGAAAAAATTCAGCTAAAAACTCGAA
840 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACA-AAAAAATTCAGCTAAAAACTCGAA
*
18541090 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
18541155 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
18541220 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
* *
18541285 CCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTC-TC--CGA--------CGATGGTGC
195 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGC
* * * * ** *
18541339 CCCGACGAAGAAAAAGGCGGCACCAGCACATGCTCAAGCCCAGGATGTGCAACCGCAACCCTTGG
260 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
** * *
18541404 TCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTTCGTATGCC
325 TCCA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
18541469 TAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCTGGATGCGCAAGCTG
389 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * ** * **
18541534 GGGATCGATCGGGTCCCCCTCTGCATGCTGCTGATCCTG-CTACCGCAACCCTCAGTTTGGTCCA
454 GGGATCGGTCGGGT-CCCCTCTACGTGCTGCCGATCC-GACTGCCGCAACCCTTGGTCTGGTCTG
* **
18541598 ATCTTAGATTGGGAATGAACT-CGATATGCCTAAGCCAACCGACGAAAC-A------A-GCGGTT
517 ATCTTAGACTGGGAATGAACTCCG-TATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGC
* * *
18541654 GGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGAATGTG
581 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* ***
18541719 GGTTTAGGAACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
646 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
18541784 TGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
711 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * ** * **
18541849 TTGAAACTTTTTTCGTTTCGGGATTTTTAAAAATTTTTTTTGATGGAGTTTTTTCCCCAAACTTG
776 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * * * ** * * * *
18541914 GTAGATGTGATCATTGTAATTTTGTTGAAATGCATAAAAAAATTCAGCCAAAAAATCAAA
841 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
18541974 GTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
18542039 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* ** * *
18542104 TAGGGGGCCAATATAAGGGCCATGTTGCAGCACCCATCGCACATCATGTGTGCA-A-------AC
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
** *
18542161 CCCCCGATCGTCGGAACCCCAATG-CGATCGGTCAGGTTCTTCGGTGATGCTCTGGCGATGGTGC
196 CCCCCGATCGTCGGAACCCCAATGCCG-TCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGC
* * *
18542225 CCC-AGCGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCG
260 CCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
18542289 GTCTGATCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
324 GTC-CATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18542354 CTAAGTCAACCCACGGAACGAGCATGCGGGCGTTCAGCCGGCCAGAGGGGCGGGAGGTGCAAGCC
388 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * ** *
18542419 GGCGATCGGTCAGGTCCCACTCTACGTGCTGCCAATCCTG-CTGCCATAATCCTTGGTCTGGTCT
453 GGGGATCGGTCGGGTCCC-CTCTACGTGCTGCCGATCC-GACTGCCGCAACCCTTGGTCTGGTCT
*
18542483 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-C--G-A-ACGGGC
516 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGC
* ** * * *
18542540 GGGAGGGCACTACGTTGGCTAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTG
581 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * **
18542605 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATGTTTATGGCTTTTAAATTCATATGA
646 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
18542670 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
711 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * * * *
18542735 TTGAAACTTTTTACAGTTCGAGATTTTTTTAAATTTTTTCGGAAGGATTTTTTGTCCCAAACTTG
776 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * * * *
18542800 GTAGACGTGATCCTTGTATTTTCTTTGGGATGCTCATAAAAATTCAGCTAAAAACTTGAA
841 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18542860 GTGTACAAGATTTTGTGA-CATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTTAATGGCTACTA
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTG
* *
18542923 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
65 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
18542988 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCTGG
130 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * ** **
18543053 TCCCCCCGATCG-CTGGAACCCTAATGCCGTCGGTCAGGTTCTTTGGTGATGCTCTAGCGATGGT
195 -CCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGT
* * *
18543117 ACCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAGCCCTC
258 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
18543182 GGTCCAGTCCGATCTTAGACTGGGAATGGACTTCATATGCTTAGACTGGGAATGAACTCCGTATG
323 GGTCCA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * ** * * *
18543247 CCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGTTGGCCAGAGGGGCGGGATCCGTAAGT
387 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* ** * * * * * * * *
18543312 TGGGGATCGACCGGGTCCCCCTCTGCGTGTTGCTGATCCTG-CTACCACGACCCTTGATCCGGTC
452 CGGGGATCGGTCGGGT-CCCCTCTACGTGCTGCCGATCC-GACTGCCGCAACCCTTGGTCTGGTC
*
18543376 TGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACG-AA--A-C--G-A-GCGGG
515 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGG
* ** * *
18543433 CGAGCGGGCACTACGCTAGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGT
580 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
18543498 GGGTTTAAGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
645 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
18543563 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATGACTCGTTTTGC-ATTTTTCACGAT
710 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT-CTATTTTTCACGAT
* * * * * **
18543627 ATTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTCACCCCAAACT
774 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * *
18543692 TAGTAGATGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATACAGCTAAAAACTCGAA
839 TGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
18543755 GTGTACAAGATTTTGTGACCATTCGAAAAAAATGTACCCATTTCAGACACTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
18543820 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCAAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* **
18543885 TAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATTACACATCATGTGCGCACACACCCCTCG
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC-CG
** * * *
18543950 GACCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGATGATGCTCCGACGATGGT
194 G-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGT
* * * * *
18544015 GCCCTGACGAAGAAAAATGAGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCATC
258 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * * *
18544080 GGTCCAGTACAATCTTAGGCTGGGAACGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATA
323 GGTCCA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * * * * * *
18544145 CCTAAGTGAACGCATGAAACGAGAGAGCGGGCGCGCAGTCGGTCAGAGGGGTGGAAAGCGCAAGT
387 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * ** *** *
18544210 CAGGGATCGATCGAGTCCCTCTCTACGTGCTGCCGATCTTG-CTGTTGCAACCCTCAATCTGATC
452 CGGGGATCGGTCGGGTCCC-CTCTACGTGCTGCCGATC-CGACTGCCGCAACCCTTGGTCTGGTC
* * * * *
18544274 -CAGTCATAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC-TGCGG
515 TGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGG
* * * *
18544337 GTGGGTGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
579 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
18544402 TGGGTTTAGGCACTTCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGC
644 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
18544467 ACTGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACGAT
709 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* **
18544532 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGG-GTTTTGGCCATAAACT
774 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
*
18544596 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAA
839 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
18544657 GTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTATTGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
18544722 CAGCAAACGTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
18544787 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGCACACCCCCCGGC
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* *
18544852 CCCACCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTTCGACGATACTCCGGCGATGGTGC
196 CCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGC
* * * *
18544917 CCTGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTTC-
260 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCG
* * * * **
18544981 GTCCTATCTGATATTAGAGTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTACAC
324 GTCC-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* *
18545046 CTAAGTCAACCCATGAAACGAGCGTGC-GGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCC
388 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * * *
18545110 GAGGATCGGCCAGGTCTCCCTCTATGTGCTGTCGATCCGACTGCTGCAGCCCTTGGTCTGGTCCG
453 GGGGATCGGTCGGGTC-CCCTCTACGTGCTGCCGATCCGACTGCCGCAACCCTTGGTCTGGTCTG
**
18545175 GCCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCG
517 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCG
* *
18545240 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTATGTGG
582 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
** *
18545305 GTTTAGGTGCATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
647 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
18545370 GGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTT
712 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * * * * * * **
18545435 CAAAAGTTTTTGCAGTTCGGGATTTTTTTAAATTTTTTCAAAAGTATTTTTTACCCCAAACTTGG
777 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
18545500 TAGTCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCCAAAAGCTCGAA
842 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18545559 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18545624 CAGCAAACCTGTAAAATCTCTAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
18545689 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCG
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCG
* * * * *
18545754 GCCCCCCGATCGTCGAAACCCCAATGCTGTCGGTCAGGTTCTCCGATGATGCTCCAGCGATGGTG
194 GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTG
* * * * * * *
18545819 CCCCGACGAAGAAAAATACGGCACTAGCACATGCCCAAGCCTAGCATTTGCTGTCGTAACCCTC-
259 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
18545883 G-------G----T---C------TG-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCC
324 GTCCATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
18545924 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGAGCAGGATGCACAAGTCG
389 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* ** * * * * * * * **
18545989 GGGATC-GACTGATTCCTCTTTTGCGTGCTGCCGATCCTACTACCGTAACCCTTGGTTTGGTCCA
454 GGGATCGGTC-GGGTCC-CCTCTACGTGCTGCCGATCCGACTGCCGCAACCCTTGGTCTGGTCTG
* * *
18546053 ATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGCTAACAGACGAAACGAGC--G--GGCGGGCG
517 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCG
* * * *
18546114 GGCCGACACTACGCCGGCCAGAGAGACTGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
582 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
18546179 GTTTAGGCACATCTTCATATTTCTACGTTCC-A--CCATTTTTATGGCTTGTAAATTCATACAAT
647 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
18546241 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
712 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * *
18546306 TGAAACTTTTTGCAGTTCGTGATTTTTTTAAATTTTTTTCAGAAGGATTTTTGGCCCCAAACCTG
777 TGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
** *
18546371 GTAGTTGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
841 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
18546431 GTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGC
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
18546496 CAGCAAACCTGTAAAATCCCAAATGCTCTTTAAAGGGGTCTGAGTTCTCGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
18546561 TA-GCGGCAAATATAAGGGACAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-
18546625 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC-TC--CGA---T-----GATGGTGC
195 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGC
* * * * *
18546679 CCCGACGAAGAAACATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGTAACCCTCGG
260 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
18546744 T-CAGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGC
325 TCCA--TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
18546808 CTAAGTTAACCCACAAAATGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCC
388 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * *
18546873 GGTGATCGGCCGGGTCCCTCTCTACGTGCTGTCGATCTTGA-TGCCGCAACCCTCGGTCTGGTCT
453 GGGGATCGGTCGGGTCCC-CTCTACGTGCTGCCGATC-CGACTGCCGCAACCCTTGGTCTGGTCT
* * * *
18546937 GATCCTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGC
516 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGC
* * * *
18547002 GGGCGGGCACTTCGCCGGCCAGAGAGACGAGATGTGCAAGCCGTGGATCGATAAGGTGGTAGGTG
581 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
18547067 GGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
646 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
18547132 TGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
711 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *
18547197 TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTAG-CCCAAACTTG
776 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
*
18547261 GTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAA
841 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
18547320 GTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCTCCATTTTAGACACTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18547385 CAGCAAACCTGTAACATCTCAAATGCTCTTTAAGGAGGTGTGAGTT-TCTGAGGTTTGATGAGGG
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGG
* ** * * * * *
18547449 ATACGGGGATATTATATGGGCTAAGCACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCGG
130 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * * * * * *
18547514 CCCCCTGATCGTCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGGCAATGCTCTGACGATGGTGC
195 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGC
** * * *
18547579 CCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGCCGCAACCGTCGG
260 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* ** *
18547644 TCCAATCCGATCTTAGACTGGGAATGAACTGCACATGCTTAGACTGGGAATGAACTCCGTCTGCC
325 TCC-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
18547709 TAAGTCAACCCACGAAACGAGCGCGCGGGCGCTCAGTCGACCTGAGAGGCGGGATGCGCAAGCCG
389 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * ** * * * *
18547774 GGGATCCGTCGGGTCGCACTCTATATGCTGCCGATCCTG-TTTCCGTAACCCTCGGTCTGGTCTG
454 GGGATCGGTCGGGTC-CCCTCTACGTGCTGCCGATCC-GACTGCCGCAACCCTTGGTCTGGTCTG
* * * *
18547838 ATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACTGATGAACCGAGCGGG-A---GGGCG
517 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCG
* * *
18547899 GGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC-A-AGGGTGGTAGCTGC
582 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
18547962 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTGATGGCTTGTAAATTCATACAAT
647 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
18548027 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTATATTTTTCATGATTTT
712 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* ** *
18548092 TGAAACTTTTTACGGTTCGGGATTTTTAAAAATTTTTTTGGATGGA-TTCTTGGCCCCAAACTTG
777 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTT-TTGGCCCCAAACTTG
* * * * *
18548156 GTAGACATGATCCTTGTATTTTTGTTGGCATGTATAAAAAAATTCAGCTAAAAAATCGAA
841 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* **
18548216 GTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCTTCATTTCAGACACTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
18548281 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT-GAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
18548345 TAGGTGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTGCCCGG
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGG
* * * *
18548410 CGCCCCCGATCGACGGAACCCTAATGCCGTCGGTCAGGTT-TTCTGGCGATGCTCCGGTGATGGT
195 C-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTC-GACGATGCTCCGGCGATGGT
18548474 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
258 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
** *** *
18548539 AATTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGGACTCCGTATG
323 -GGTCCATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
18548604 CCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGT
387 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * * *
18548669 CGGGGATTGATCGGGTCCGCCTTTGCATGCTGCCGATCCTATTGCCGCCACCCTCGGTCTGGT-T
452 CGGGGATCGGTCGGGTCC-CCTCTACGTGCTGCCGATCCGACTGCCGCAACCCTTGGTCTGGTCT
* *
18548733 CGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGG-A---GGG
516 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGG
* *
18548794 CGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
580 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
18548859 GGGCTTAGGCACATCTTCATATTT-TTCATGCC-A--CCATTTTTATGGCTTGTAAATTCATACA
645 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
18548920 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
710 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
18548985 TTTGAAACTTTTTATGGTTCGTGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAACAT
775 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* *
18549050 GGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAA
840 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
18549111 GTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18549176 CAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
18549241 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCATGG
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGG
*
18549306 CCCCCCCGATCGTCGGAACCCCAATGCC-ACTGGTCAGG----T------T-CTCCGGCGA---T
195 -CCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTTCGACGATGCTCCGGCGATGGT
* * * * * *
18549356 GCTCCGACGAAGAAAAAATGTGGCACCAGCACATTCCCAAGCCTAGCATGTGCTGTCGCAACCCT
258 GCCCCGACGAAG-AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
18549421 CGGTCCCGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCGTAT
322 CGGT-CCATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
18549486 GCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAGCCAGCCAGACGGGCGGGATGCGCAAG
386 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
** * * * **
18549551 CCGGGGATCGACCAGGTCTCGCTCTA-GTGCTGCCGATCCTACTGCCGCAACCCTTGGTCCAGTC
451 CCGGGGATCGGTCGGGTC-CCCTCTACGTGCTGCCGATCCGACTGCCGCAACCCTTGGTCTGGTC
* ** ** * *
18549615 TGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAGTCGATTAAACGAGCAGGCGGGCGGG
515 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGG
18549680 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
580 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * *
18549745 TGGTTCAGGCACATCTTCATATTTCTGCCTGCCAATGCCACTTTTATGGCTTGTGAATTCATACA
645 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * * **
18549810 ATGGTCCCTTAAGCCTCCATGTGAAGTTTCATAGCAGGACGACTCGTTTTTTATTTTTCATTATT
710 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * * * *
18549875 TTAAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTCGGAAGGAGTTTTGACCCCAAACT
775 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACT
*
18549940 TGGTAGACGTGATCCTTGTATTTTTTTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
839 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
18550002 GTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACGGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * **
18550067 CAGCAATCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCCTGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
18550132 TACGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTTG
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC--G
* * * * * *
18550197 GCCCCTCCGATCGCCAGAACCCCAATGTCG-CTGATCAGGTTC-TCCAGCGATGCTCCGACGATG
194 GCCCC-CCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTTCGA-CGATGCTCCGGCGATG
* * *
18550260 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATTCCCGAGCCTAGCATGTGCTGTCGCAACCC
256 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * *
18550325 TCGATCCCATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCTGTA
321 TCGGT-CCATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * ** *
18550390 TGCCTAAGTTAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAAAGGCGGGATGCACAA
385 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
** * *
18550455 GCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTG-CTGCCGCAACCCTCGGTCTGA
450 GCCGGGGATCGGTCGGGT-CCCCTCTACGTGCTGCCGATCC-GACTGCCGCAACCCTTGGTCTGG
* * * * * *
18550519 TCTAATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCA
513 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCG
*
18550584 GGCGGGCGGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
578 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
18550649 GTTGGTTCAGGCACATCTTCATATTT-TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
643 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
18550713 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCCTTTTTCTATTTTTCATG
708 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-CGTTTTCTATTTTTCACG
* * * *
18550778 ATTTTTCAAACTTTTTACGGTTCGGGATTGTTTTAAAATTTTTTCAGAAAGAGTTTCGACCCC-A
772 ATTTTTGAAACTTTTTACGGTTCGGGATT-TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
*
18550842 ACTTGGTAG-CGTGATCCTTGTATTTTTTTTTGCATGCAC-AAAAAATTCAGCTAAAAACTCGAA
836 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * *
18550905 GTGTACAAGATTTTGTGTCCA-TTGAATAAAGTGTCCTCATTTC-GAACACTTTAAAGGCTACTG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTG
* * *
18550968 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGCGCTGTGAGTTCTCAAGGTTTCATGAG
65 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGG-GGTGTGAGTTCTCGAGGTTTGATGAG
18551033 GGATA-GGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGGCGCACACCCCC
128 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-GCGCACACCCCC
* * * * * * * * *
18551096 CTGCCCCCCCCGATCGCCAGAACCCCAATGCGGGC-ATC-GGTTC-TCCAGCGATGCTCTGACGA
192 C-G-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGA-CGATGCTCCGGCGA
** * * *
18551158 TTGGTG-CCCGACGAAGAAAAATGTAGCACCAGCACTTGCCCGAGCCCAGTATGTGCTGCCGTAA
254 -TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * *
18551222 CCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGAATCAACTCC
318 CCCTCGGTCC-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * *
18551287 GTATGTCTGAGTCAACCCACGAAACGAGCGTGCGGGCGCTCTGCCGGCCAGAAGGGTGGGATGCG
382 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * ** * * ** *
18551352 CAAGTCGGGGATCGGTCGGGTCCCCTTCTACGTACTATCGATCCTA-TGCTGCAACCCTCAGTCC
447 CAAGCCGGGGATCGGTCGGGTCCCC-TCTACGTGCTGCCGATCCGACTGCCGCAACCCTTGGTCT
* *
18551416 AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA----GC-GG
511 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGG
* *
18551476 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATTC-TTAGGGTGG
576 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA-TCGATAGGGTGG
* **
18551540 TAGGTGGGTTTAGGCACATCTTCATATTTTTGCACCCCAATGCCATTTTTATGGCTTGTAAATTC
640 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
18551605 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTA
705 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
18551670 CGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTT-TGAAAGGAGTTTTGGCCC
770 CGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCC
* *
18551734 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTC
833 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
18551799 GAA
898 GAA
* * *
18551802 GTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTATTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
18551867 CAGCAAACCTGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
18551932 TAGGGAGCCAATAT-AGGG-GATAGTTATCAGCACCCATCGCACATCATGTACGCACACCCCCTC
131 TAGGGGGCCAATATAAGGGCCA-AG-TACCAGCACCCATCGCACATCATGTGCGCACACCCCC-C
** ** *
18551995 GGCCCCCCGATCG-CCAAACCCCAATGCCACCGATCAGGTTC-TC--CGA--------CGATGGT
193 GGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGT
* * * * * *
18552048 GCCCCGATGATGAAAAATACGGCACCAGCACATGCCCGAGTCCAGCATGTGCTGTCGCAAGCCTC
258 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * *
18552113 GGTCCGGTTCGATCTTAGGCTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
323 GGTCC-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
18552178 CCTAAGCCAACCGACGAAACGAGCG
387 CCTAAGTCAACCCACGAAACGAGCG
18552203 GATGGGCGGG
Statistics
Matches: 11385, Mismatches: 1271, Indels: 494
0.87 0.10 0.04
Matches are distributed among these distances:
859 65 0.01
860 1 0.00
864 1 0.00
867 2 0.00
868 1 0.00
869 5 0.00
870 42 0.00
871 159 0.01
872 214 0.02
873 1 0.00
874 96 0.01
875 36 0.00
876 3 0.00
877 54 0.00
878 124 0.01
879 4 0.00
880 1 0.00
881 4 0.00
882 93 0.01
883 183 0.02
884 207 0.02
885 344 0.03
886 1051 0.09
887 252 0.02
888 214 0.02
889 590 0.05
890 500 0.04
891 301 0.03
892 148 0.01
893 108 0.01
894 1401 0.12
895 780 0.07
896 532 0.05
897 470 0.04
898 597 0.05
899 239 0.02
900 903 0.08
901 64 0.01
902 514 0.05
903 228 0.02
904 96 0.01
905 498 0.04
906 251 0.02
907 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCC
CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
CCATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
GATCGGTCGGGTCCCCTCTACGTGCTGCCGATCCGACTGCCGCAACCCTTGGTCTGGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
Found at i:18546791 original size:26 final size:26
Alignment explanation
Indices: 18546755--18546807 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18546745 CAGGTCTGAT
*
18546755 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18546781 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18546807 C
1 C
18546808 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18548581 original size:26 final size:26
Alignment explanation
Indices: 18548552--18548604 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18548542 TTGGTCCGAT
18548552 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18548578 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18548604 C
1 C
18548605 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18549464 original size:26 final size:26
Alignment explanation
Indices: 18549435--18549487 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18549425 CCCGTTCGAT
*
18549435 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18549461 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18549487 C
1 C
18549488 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18550376 original size:26 final size:26
Alignment explanation
Indices: 18550340--18550392 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18550330 CCCATCTGAT
18550340 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
18550366 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
18550392 C
1 C
18550393 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18551276 original size:26 final size:26
Alignment explanation
Indices: 18551240--18551291 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18551230 CCGATCCGAT
* *
18551240 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
18551266 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
18551292 TCTGAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:18552162 original size:26 final size:26
Alignment explanation
Indices: 18552126--18552178 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18552116 CCGGTTCGAT
*
18552126 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18552152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18552178 C
1 C
18552179 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18552907 original size:25 final size:24
Alignment explanation
Indices: 18552860--18552908 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
18552850 CGATCCGACT
*
18552860 CTTAGATGGGAATGAACTCGTATG
1 CTTAGATGGGAATCAACTCGTATG
18552884 CTTAGA-GGGAATCAATCTTCGTATG
1 CTTAGATGGGAATCAA-C-TCGTATG
18552909 TCTGAGTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 8 0.36
24 7 0.32
25 7 0.32
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.31
Consensus pattern (24 bp):
CTTAGATGGGAATCAACTCGTATG
Found at i:18554612 original size:26 final size:26
Alignment explanation
Indices: 18554583--18554634 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18554573 CCGATTCAAT
* *
18554583 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
18554609 CTTAGACTGGGAATCAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
18554635 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:18555667 original size:25 final size:25
Alignment explanation
Indices: 18555627--18555674 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
18555617 TTGCGGTTTG
*
18555627 GGATTTTTTTAAATTTTTTTTGGAA
1 GGATTTTTTTAAATTTTTGTTGGAA
**
18555652 GGATTTTTTTCTATTTTTGTTGG
1 GGATTTTTTTAAATTTTTGTTGG
18555675 CATGCACAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.17, C:0.02, G:0.19, T:0.62
Consensus pattern (25 bp):
GGATTTTTTTAAATTTTTGTTGGAA
Found at i:18555882 original size:586 final size:588
Alignment explanation
Indices: 18554765--18555931 Score: 2077
Period size: 586 Copynumber: 2.0 Consensus size: 588
18554755 GGTCCATTCT
* * *
18554765 GATCTTAGACTAAGAATGAATTCCCTATGCCTAAGCCAACCAACGAAACGAGAGGGCGGGCAGAC
1 GATCTTAGACTAAGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACAAGAGGGCAGGCAGAC
18554830 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATTCTTAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATTCTTAGGGTGGTAGGTGGGTT
18554895 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
18554960 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGA
18555025 AACTTTTTGCGGTTTGGGATTTTTTTAAAATTTTTTCGGAAGGAGGTTTTTCTATTTTTGTTGGC
261 AACTTTTTGCGGTTTGGGATTTTTTTAAAATTTTTTCGGAAGGAGGTTTTTCTATTTTTGTTGGC
*
18555090 ATGCACAAAACAATTCAACTAAAAACATGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
326 ATGCACAAAACAATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
18555155 TCCCCATTTCAGACACTTGAAGGGCTACTGGCAGCAAACTTGTAAAATCTTAAATGCTCTTTAAG
391 TCCCCATTTCAGACACTTGAAGGGCTACTAGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAG
18555220 GGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATACAAAGGCCAAGTACCAGCACC
456 GGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATACAAAGGCCAAGTACCAGCACC
* *
18555285 CATCGCACATCATATGCGCACA-CCC-CCCGACCCCCCCGATCGCCGAAACCCTAATGCCGTCGG
521 CATCACACATCATATGCGCACACCCCTCCCGACCCCCCCGATCACCGAAACCCTAATGCCGTCGG
18555348 TCC
586 TCC
* * * ** * *
18555351 GATCTTAGACTAGGAATGAACTCCGTTTGCCTAAGCCAACTGACGAAACAAGCGGGCAGGCAGGC
1 GATCTTAGACTAAGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACAAGAGGGCAGGCAGAC
*
18555416 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATTCTTAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATTCTTAGGGTGGTAGGTGGGTT
18555481 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
18555546 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGA
* * **
18555611 AACTTTTTGCGGTTTGGGATTTTTTTAAATTTTTTTTGGAAGGATTTTTTTCTATTTTTGTTGGC
261 AACTTTTTGCGGTTTGGGATTTTTTTAAAATTTTTTCGGAAGGAGGTTTTTCTATTTTTGTTGGC
* *
18555676 ATGCACAAAACAATTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
326 ATGCACAAAACAATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
18555741 TCCCCATTTCAGACACTTTAAGGGCTACTAGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAG
391 TCCCCATTTCAGACACTTGAAGGGCTACTAGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAG
* *
18555806 GGGGTGTGAGTTCTCTAGGTTTGATGGGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACC
456 GGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATACAAAGGCCAAGTACCAGCACC
* *
18555871 CATCACACATCATGTGCGCACACCCCTCCCGACCCCCCCGATCATCGAAACCCTAATGCCG
521 CATCACACATCATATGCGCACACCCCTCCCGACCCCCCCGATCACCGAAACCCTAATGCCG
18555932 CCTCTCAGGT
Statistics
Matches: 552, Mismatches: 27, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
586 517 0.94
587 3 0.01
588 32 0.06
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (588 bp):
GATCTTAGACTAAGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACAAGAGGGCAGGCAGAC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATTCTTAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGA
AACTTTTTGCGGTTTGGGATTTTTTTAAAATTTTTTCGGAAGGAGGTTTTTCTATTTTTGTTGGC
ATGCACAAAACAATTCAACTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTGAAGGGCTACTAGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATACAAAGGCCAAGTACCAGCACC
CATCACACATCATATGCGCACACCCCTCCCGACCCCCCCGATCACCGAAACCCTAATGCCGTCGG
TCC
Found at i:18557358 original size:877 final size:874
Alignment explanation
Indices: 18555663--18558019 Score: 3284
Period size: 877 Copynumber: 2.7 Consensus size: 874
18555653 GATTTTTTTC
* *
18555663 TATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
** * *
18555728 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGGGCTACTAGCAGCAAACCTGTAAAATCTTA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
18555793 AATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGGGGGATAGGGGGCCAATACAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
18555858 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCCCGACCCCCCCGATCATCGAAACC
196 AAGTACCAGCACCCATCGCACATCATGT-CGCACA-CCC-CCCG-GCCCCCCGATCACCGGAACC
** * * **
18555923 CTAATGCCGCCTCTCAGGTTCTCCGACGATGCTCCTGCAATGGTGCC-CAGATGAAGAAAAGCGC
257 CTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCTC-GATGAAGAAAAATGC
18555987 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGGTCCGATT-TTAGA
321 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGGTCCG-TTCTTAGA
* * * * * *
18556051 TTGCGAATGAACTT-TGTTTGCCTAAGTCAACACACGAAAGGAGCGTGCGGTCACTTAGCCGGCC
385 CTGGGAATGAA-TTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCACTCAGCCGGCC
* * * *
18556115 AGAGGGGCGGGATGCGCAAGCCAGGGATCGA-CTGGGTCCCCTTCTGCGTGCTGCCGATCCTACT
449 AGAGGGGTGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCTTCTACGTGCTGCCGATCCTGCT
* * * *
18556179 GTCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGCCAACCGA
513 GTCGCAACCCTCTGTCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * *
18556244 CGAAATGAACGGGCGGGCGG-CGGGCGGGCACTACGTCAGCCAGAGAGATGAAATGTGCAAGCCG
578 CGAAACGAACGGGCAGGCGGACGGGCAGGCAATACGTCAGCCAGAGAGACGAAATGCGCAAGCCA
* * * * *
18556308 TGGATCGATAGGGTGGGTAGGTGGGTTAGGTACATCTTCATATTTCTACGTGCCAATGATATTTT
643 TGGATCAATAGGGTGGGTAGGCGGGTTAGGCACATCTTCATATATCTACGTGCCAATCATATTTT
* * *
18556373 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTCATGGGCAAGATGACTC
708 ATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTCATGGGCAAGACGACTC
* * ** * *
18556438 GTTTTCTGTTTTTCATGATTTTTGAAACTTTTTATGATTCAGGATTTTTTAAAATTTTTTCGA-A
773 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCAGGATTTTTTAAAA-TTTTTCCACA
* * * *
18556502 ATGAGTTTTGGCCCCAATCTTGGTAGATGTGATTCTTG
837 ACGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
18556540 TATTTTTGTTGGCACGCACAAAAAAATTCAACTAAAAACTCGAGGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
18556605 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTGGCAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
18556670 AATGCTCTTTAAGGGGGTGTGAGTCCTCGAGGTTTGATGTGGGATAGCGGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
18556735 AAGTACCAGCACCCATCGCACATCATGTCCGAACACCCCCCGGCCCCCCTGATCGCCGGAACCCT
196 AAGTACCAGCACCCATCGCACATCATGT-CGCACACCCCCCGGCCCCCC-GATCACCGGAACCCT
* * * * * *
18556800 AATGCCGTCGGTCAGGTTCTCC-AGTGATGCTCCGGTGATGGTGCCTCGGTGAAGAAAAATACAG
259 AATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCTCGATGAAGAAAAATGCGG
* * * * * *
18556864 CTCCAGAACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGATCCGGTCTGTTCTTTGACTG
323 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGGTCCGTTCTTAGACTG
* * * *
18556929 GGAATGAATTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTGCTGTCACTCAGCCGGCCAGAG
388 GGAATGAATTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCACTCAGCCGGCCAGAG
*
18556994 TGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGTCGC
453 GGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGTCGC
* * *
18557059 AACCCTCTGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
518 AACCCTCTGTCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* **
18557124 CGAACGGGCAGGCGGATGGGCAGGCAATACG-CAGGCCAGAGAGACGGGATGCGCAAGCCATGGA
583 CGAACGGGCAGGCGGACGGGCAGGCAATACGTCA-GCCAGAGAGACGAAATGCGCAAGCCATGGA
* *
18557188 TCAATAGGGT-GGTAGGCGGGTTTAGGCATATCTTCATATATCTGCGTGCCAATTCCAT-TTTTA
647 TCAATAGGGTGGGTAGGCGGG-TTAGGCACATCTTCATATATCTACGTGCCAA-T-CATATTTTA
*
18557251 TGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GGCAAGACGACTT
709 TGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAG-TTCATGGGCAAGACGACTC
* *
18557315 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTCCACAA
773 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCAGGATTTTTTAAAATTTTTCCACAA
*
18557380 CGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
838 CGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
18557417 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
18557482 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGTAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
18557547 AAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* ** *
18557612 AAGTACCAGCACCCATCGCACATCATGT-GCACACACCCCTGGCCGCCCCGATCACTAGAACCCC
196 AAGTACCAGCACCCATCGCACATCATGTCGCACAC-CCCCCGGCC-CCCCGATCACCGGAACCCT
* * * * * *
18557676 AATGCCGCCGGTTATGTTCTCCGACGATGCTCCGACGATGGTACCTTGACGAAGAAAAATGCGGC
259 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCTCGATGAAGAAAAATGCGGC
* * **
18557741 ACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTGG
324 ACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGGTCCGTTCTTAGACTGG
* * * *
18557806 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGG
389 GAATGAATTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCACTCAGCCGGCCAGAGG
* * * * *
18557871 GGTAGGATGCGCAAGCTGGGGATCGGTTGGGTCCCCCTCTACGTGCTGCCGATCCTGCTG-CTGC
454 GGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGTC-GC
* * * *
18557935 AACCCTCTGTCCGATCCGATCTTAGAATGGAAATGAACTCCGTATGCCTAAGCCAACTGAAGAAA
518 AACCCTCTGTCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
18558000 C-AAGCGGGCAGGCGGACGGG
583 CGAA-CGGGCAGGCGGACGGG
18558020 TGGGCGAGCA
Statistics
Matches: 1305, Mismatches: 157, Indels: 37
0.87 0.10 0.02
Matches are distributed among these distances:
874 11 0.01
875 320 0.25
876 397 0.30
877 570 0.44
878 7 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (874 bp):
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTCGCACACCCCCCGGCCCCCCGATCACCGGAACCCTAA
TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCTCGATGAAGAAAAATGCGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGGTCCGTTCTTAGACTGGGA
ATGAATTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCACTCAGCCGGCCAGAGGGG
TGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCTACGTGCTGCCGATCCTGCTGTCGCAAC
CCTCTGTCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
ACGGGCAGGCGGACGGGCAGGCAATACGTCAGCCAGAGAGACGAAATGCGCAAGCCATGGATCAA
TAGGGTGGGTAGGCGGGTTAGGCACATCTTCATATATCTACGTGCCAATCATATTTTATGGCTTG
TAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTCATGGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTCAAAACTTTTTACGATTCAGGATTTTTTAAAATTTTTCCACAACGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTG
Found at i:18560994 original size:26 final size:26
Alignment explanation
Indices: 18560965--18561017 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18560955 CCGGTCCGAT
*
18560965 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
18560991 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
18561017 C
1 C
18561018 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:18562758 original size:26 final size:26
Alignment explanation
Indices: 18562729--18562781 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18562719 CTAATCCGAT
18562729 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
18562755 CTTAGGCTTGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18562781 C
1 C
18562782 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18563421 original size:884 final size:877
Alignment explanation
Indices: 18559429--18567761 Score: 9320
Period size: 884 Copynumber: 9.4 Consensus size: 877
18559419 TACGCAGACC
* * *
18559429 AGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
18559494 TTTCCGCATGCCAATGCTATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
66 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
18559559 TGAAGTTTCGTGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTACGGTTCG
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
** * *
18559623 AAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACCTGATAGACGTGATCCTTGTATT
196 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
18559687 TTTTTTGGCATGCATAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
261 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
18559752 AAAAAAGTGTCCCCATTTCAGACACTTTCATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
326 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* **
18559817 CTCTTTAAGGGGGTGTGTGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
391 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * *
18559882 ACTAGCACCCATCACACATCATGTGCGCACACCCCCTCGACCCCCCGATTGCCGGAACCCCAATG
456 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATG
* *
18559947 CCGCCGGTCAGGTTATCCGGTGATGCTCCGGCGA-GGTGGCCCCGACGAAGAAAAATGTGGCACC
521 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT-GCCCCGACGAAGAAAAATGTGGCACC
* * * * *
18560011 AGCACGTGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAA
585 AGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC---TCCGATCTTAGACT-GGAA
*
18560076 TGAACTCC-TACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
646 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
18560140 GTGGGTGCTCAGCCGGCCAGAAGGGCGGGATGCACAAACCGGGGATCGGTCGGGTCCCCCTCTGT
711 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
* * * * * * *
18560205 GTACTGCCAATCCTGCTACCGCTACCCTCGGTCCGGTCTGATCTTAGACTGGGAATTAACTCCGT
776 GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
** *
18560270 ATGCCTAAGCCAACCGACGAAACTAGCGGGCGGGCGGGCAGGCACT
841 ATGCCTAAGCCAACCGACG-AA-T-G-GAACGGGTGGGC--G---T
** * * *
18560316 ACGCCGGCCAGAGCGACGGGATGCGCAAGCCAAGGATCGATAGGGTGGTAAGTGGATTGAGGCAC
1 A-----G--AGA--GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
18560381 ATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
57 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
18560446 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
122 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTT
* * * *
18560511 TACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGGCCCCAAACGTGGTAGACGTCAT
187 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * * * * *
18560576 CCTTTTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAACTATACAACATTTTGT
252 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * * *
18560641 GACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTGATTGCTATTGACAGCAAACCTGTAAAA
317 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
18560706 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
382 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
18560771 GGGCCAAGTACCAGCACCCATCACACATCATGTGCCCACACCCCGCCCTCGGCCCCCTCGATCG-
447 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCC-CGGCCCCC-CGATCGT
* * * * *
18560835 CTGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGTCTCGACAAAGA
508 C-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * *
18560900 AAAATGTGGCTCCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGAT
572 AAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-C--TCCGAT
*
18560965 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCC
634 CTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
18561030 ACAAAACGAGCGTACGGCCACTCAACCGGCTAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCG
698 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
* * *
18561095 GGTCCCCCTCTGCGTGCTGCC-A-----------CAACCCTCAG-CTGTTCTGATCTTAGACTGG
763 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
*
18561147 GAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGGAGGGTGGACGGACGGGCACTAC
828 GAATGAACTCCGTATGCCTAAGCC-A---AC----CGA-C--GA--ATGGA---ACGGG---T--
*
18561212 GTCGGC-C
872 G--GGCGT
*
18561219 AGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
18561284 TTTCTGCATGCAAATGCCATTTTTATGGCTCGTAAATTCATGCAATGGTCCCTTAAGCCTTCACG
66 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* ** * * * **
18561349 TGAAGTTTAATGGTGAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAGCTTTTTGCGGTTTA
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
*
18561414 GGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
196 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * *
18561479 TTTGTTGGCATGCAAAAAAAAAGTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTG
261 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
** * * *
18561544 AAAAAAGCATCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATT
326 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
18561609 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACT
391 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * **
18561674 ACCAGCACCCATTGCACATCATGTGAGCACA-CCCCCCGACCCCCTTGATCGTCGAAACCTTAAT
456 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAAT
* * * * * *
18561738 ACCGCCGGTCAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA-ATGGTACC
520 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACC
* * *
18561802 AGCACATGCTTGAGCCTAGCATGTGCTGCCGTAACCCTC-G-----G----T---CTGG--T---
585 AGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTCCGATCTTAGACTGGAATGAA
* * * *
18561849 CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCCACGAAACAAACGTGCGG
650 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * ** * * * *
18561910 GTGTTCAGCCGGCCAGAGGGGCGGGATAAGCAAGCCGAGGATCGGCCAGGTCCCCCTCTGCGTGA
715 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
* * * * * * ** * * *
18561975 TACCAATCTTACTACCGCAACCCTCGTTC-ACTCCGATCTTATACTAGGAATGAACTCCGTGTGC
780 TGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
18562039 CTAAGCCAATCGACGAAAGGAGCGGGCAGGCGGTCGAGCAGGCACTACGTTGGT
845 CTAAGCCAACCGACGAATGGA------A--CGG--GTG--GG-----C----GT
*
18562093 CAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
1 -AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
** * *
18562158 ATTTCTGTGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCAC
65 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * * *
18562223 GTGAAGTTTCATGGCAAGACGAATCGTTTTCGATTGTTCACGATTTTCAAAACTTTTTACGGTTC
130 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTC
* * *
18562288 AGGATTTTTGAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
195 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
** * * *
18562352 TTTTGTTGGCATGCACAAAAAAGGTCAACTAAAAACTCAAAGTTTACAAGATTTTGTGACCATTT
260 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
**
18562417 GAAAAAAGCATCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
325 GAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * **
18562481 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGCATAGTTGGCCAATATAAGGGCCAA
389 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
18562546 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCTGCCCCCTCGATCGTCAGAACCCCA
454 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCA
* * * **
18562610 ATACCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCTCGGTGAAGAAAAATGTGGCA
518 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCA
* * * *
18562675 CCAGCACATTCCCGAGCCCAGCATATGCTGCCACAACCCTCGGTCTAATCCGATCTTAGACTAGG
583 CCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC---TCCGATCTTAGACT-GG
* * *
18562740 AATGAACTCCGTATGCTTAGGCTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAC
644 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * ** ** *
18562805 GTACGGGCCCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGACCGTGTCCCCCTCT
709 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * *
18562870 GTGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCC
774 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
*
18562935 GTATGCCTAAGCCAACCGACGAATTGAACGGGTGGGCGT
839 GTATGCCTAAGCCAACCGACGAATGGAACGGGTGGGCGT
18562974 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
18563039 TTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACG
66 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
18563104 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAATCTTTTTACGGTTCT
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
* ** * * **** *
18563169 TGATTTGTGAAAAATTTTTTAGAAATCCTTTTTTGGGCCCCAAACTTGGTAGACATGATCCTTGT
196 GGATTT-TTTAAAATTTTTTCGGAA-GGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
18563234 ATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCAT
258 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
18563299 TTGAAAAAAGTGACCGCATTTCTA-AAACTTTCATGGCTACTGGCAGCAAACCTGTAAAATCTCA
323 TTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
18563363 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
387 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * * * *
18563428 AACTACCAGCACCCATTGCACATCATGTGAGCACA-CCCCCCGACCCCCTTGATCGTCGAAACCT
452 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCC
* * * * * *
18563492 TAATACCGCCGGTCAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA-ATGG
516 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGG
* * * *
18563556 TACCAGCACATGCTTGAGCCTAGCATGTGCTGCCGTAACCCTC-G-----G----T---CTGG--
581 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTCCGATCTTAGACTGGAA
* *
18563606 T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGT
646 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * *
18563664 GCGGGTGTTCAGCCTGCTAGAGGGGCGGGATGCGCAAGCTGGGGATAGG-CTAGGTCCCCCTCTA
711 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTG
* * * * * ** * *
18563728 CATGCTGCTGATCTTACTACCGCAACCCTCGGT-TCACTCCGATCTTAGACTAGGAATGAACTCT
775 CGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
18563792 GTGTGCCTAAGCCAATCGACGAAAGGAGCGGTCAGGCGGGCGGGCAGGCACTACGTCGGT
839 GTATGCCTAAGCCAACCGACGAATGGA------A------CGGG-TGG------G-C-GT
* *
18563852 CAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCAT
1 -AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
18563917 ATTTCTGTC-TGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
65 ATTTCTG-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
18563981 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTGTTCACGATTTTCAAAACTTTTTACGGTT
129 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTT
* *
18564046 CGGGATTTTTGAAAA-TTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTA
194 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
*
18564110 TTTTTGTTGGCATGCACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
259 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
18564175 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCAACTAGCAGCAAACCTGTAAAATCTCAAA
324 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * * *
18564240 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATA-GGGGCTAATATAAGGGCAAA
389 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
18564304 GTATCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCCGGCTCCCCCTATCGCCGGAACCC
454 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCCGGC-CCCCCGATCGTCGGAACCC
* * * * * *
18564369 TAATACCGCCGGCCAGGTTCTCCGGCGGTGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGG
516 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGG
* *
18564434 CACCAGCACATGC-CTAAGCCCACCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
581 CACCAGCACATGCTC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGT-C--TCCGATCTTAGACT
* * * *
18564498 GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTCTGCCTAAGTCAACCCATGGAACG
642 -GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * *
18564563 AGCATGCGGGCACTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGAT-GGATCGGGTCCAC
706 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-TCGGGTCCCC
* * * * * * *
18564627 CTCTGTGTGTTGCCAATCCTGCTGCTGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAA
770 CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
* * ** *
18564692 CTCCATATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCAGAAGGGCACT
835 CTCCGTATGCCTAAGCCAACCGACGAATGGAACGGGTGGGC------G---T
* *
18564744 ACGTCGGCCAAAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCAC
1 A-----G----AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
18564809 ATATTCATATTTTTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
57 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
18564874 GCCTTCACATGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTT
122 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTT
* * * *
18564939 TACTGTTCGGGATTTTTTGAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
187 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
*
18565004 CCTTGTAGTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
252 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
18565069 GACCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAA
317 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
18565134 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
382 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
18565199 GGGCCAAGGACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGGCCCCCGATCGTCGGA
447 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGA
** * ** * * * *
18565264 ACCTTAATGCCCCCAATCAAGTTCTCCGACGATGCTTCGGCGATGGTTCCCCGACGAAGAAAAAT
512 ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * * *
18565329 GCGGCACCAGCACATGCTCGAGCCCAGCATGTTCTACCGTAACCCTTGGTCCGGTCCGATCTTAG
577 GTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-C--TCCGATCTTAG
* *
18565394 ACAAGGAATGAACTCCGTATGCTTAGA-TCGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
639 AC-TGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * *
18565458 AACGAGCGTACGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGGAAGCCGAGGATCAGTCGGGTC
702 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * * * **
18565523 CCCCACTGCGTGCTGTCGATCCTACTACCGCAACCGTCAGTTTGGTCCGATCTTAGACTTGCCTA
767 CCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGAC-TG-GGA
** * ** ** * * ****
18565588 A-GCCAAC-CGACG-A-AAC-GAGCGGAGGGACGGGGTATGGGCACTGCACCGGC-T
830 ATG--AACTC--CGTATGCCTAAGCCAACCGAC---GAAT-GGAAC-GGGTGGGCGT
* * *
18565639 AGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGCAGGTGGGTTTAGGTACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
18565704 TTTCTGCGTGCCAATGCCATGTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACA
66 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* *
18565769 TGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
* * * * *
18565834 GGATTTTTTCAAATTTTTTTGAAAGGAGTTTTGTCCCCAAACCTGGTAGACGTGATCCTTGTATT
196 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
18565899 TTT-TTCG-ATGCACAGAAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTG
261 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
18565962 AGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATG
326 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * * *
18566027 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGCATAGGGGGCAAATATAAGGGCTATGT
391 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
18566092 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGGCCCCCGATCGTCGGAACCCCAATG
456 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATG
*** * ***
18566157 CCGCCGGTCAGGTTCTCCGGCGATGCTCTACCGATGGTGCCCCGATGAAGAAAAATACAGCACCA
521 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCA
18566222 GCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTC-G-----G-TC-----C----A-G---
586 GCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTCCGATCTTAGACTGGAATGAAC
* * *
18566267 TCC-TA-CCTTAGACTAGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
651 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * *
18566330 CGCTCAGCCGGCCAGAGGGGTGGGATGCGGAAGCCGAGTATCGGTCGGGTCCCCCTCTACGTGCT
716 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
** * * * *
18566395 ATCAATCCTGCTGTCGCAACCCTCAGTTTGGTCCGATCTTAGACT-GGAATTGAACTCCGTATGC
781 GCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA-TGAACTCCGTATGC
** ** *
18566459 CTAAGCCAATCGACGAAACGAGCGGGGGGGGGCGGGGTATGGGCACTACGCCGACC
845 CTAAGCCAA-C--CG--ACGA-----ATGGAAC-GGG--T-GG------G-CG--T
* ***
18566515 AGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTATATACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
18566580 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACA
66 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
18566645 TGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTATGGTTTG
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
* * *
18566710 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTATTTT
196 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * * *
18566775 TTTTTTGGGATGCACAGAAAAATTCAGCTAAAAACTCAAAGTGTAAAAGATTTTGTGACCATTTG
261 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
18566840 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATG
326 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * ** *
18566905 CTCTTTAAGGGGGTGTGAGATCTCGAGGTTTGACGAGGCATAGGGGGTAAATATAAGGGCCATGT
391 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
18566970 ACCAGCACCCATCACACATCATGTGCGCACACCCTCCCCGGGCCCCCGATCGTCAGAACCCCAAT
456 ACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCCCCGATCGTCGGAACCCCAAT
** *
18567035 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCGTCGACGAAGAAAAATGCGGCACC
520 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACC
*
18567100 AGCACATGCTCGAGCCTAGCATGTGCTGCCGCAACCCTCGG--T-C---C----A---G--T---
585 AGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTCCGATCTTAGACTGGAATGAA
* *
18567147 CT--G-A-CCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
650 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * * *
18567208 GCACTCAACCGACCAGAGAGGCAGGATGCGTAAGCCAGGGATCGGCCGGGT-CCCCTCTGCGTGC
715 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
* * ** ** * *
18567272 TGTCGATCCTGCTGTCGTGACCCTCAATTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
780 TGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* ** *
18567337 CTAAGCCCACCGACGAAACGAGCTGGGGGGCGGGGTATGGGCACTACGCCGACC
845 CTAAGCCAACCGACG--A--A--T--GGAAC-GGG--T-GG------G-CG--T
*
18567391 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATA
1 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
18567456 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
66 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * *
18567521 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
* *
18567586 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACATGATCCTTGTATT
196 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * *
18567651 TTTTTTGGCATACACAGAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
261 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * *
18567716 AAAAAAGTGTTCCCTTTTCATACACTTTAATGGCTACTGGTAGCAA
326 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
18567762 TGCCGCCGGT
Statistics
Matches: 6431, Mismatches: 762, Indels: 517
0.83 0.10 0.07
Matches are distributed among these distances:
854 2 0.00
855 6 0.00
856 4 0.00
857 172 0.03
858 150 0.02
859 5 0.00
860 4 0.00
861 2 0.00
862 5 0.00
863 109 0.02
864 10 0.00
865 3 0.00
866 4 0.00
867 10 0.00
869 7 0.00
870 4 0.00
871 1 0.00
872 4 0.00
873 6 0.00
874 387 0.06
875 461 0.07
876 632 0.10
877 82 0.01
878 335 0.05
879 411 0.06
880 189 0.03
881 8 0.00
882 9 0.00
883 43 0.01
884 634 0.10
885 5 0.00
886 239 0.04
887 2 0.00
888 1 0.00
889 41 0.01
890 112 0.02
891 19 0.00
892 12 0.00
894 447 0.07
895 4 0.00
896 169 0.03
897 45 0.01
898 241 0.04
899 283 0.04
900 212 0.03
901 357 0.06
902 240 0.04
903 128 0.02
904 164 0.03
905 7 0.00
907 1 0.00
909 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (877 bp):
AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATG
CCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCA
GCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTCCGATCTTAGACTGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
GCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAATGGAACGGGTGGGCGT
Found at i:18565418 original size:26 final size:26
Alignment explanation
Indices: 18565389--18565441 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18565379 CCGGTCCGAT
18565389 CTTAGA-CAAGGAATGAACTCCGTATG
1 CTTAGATC-AGGAATGAACTCCGTATG
*
18565415 CTTAGATCGGGAATGAACTCCGTATG
1 CTTAGATCAGGAATGAACTCCGTATG
18565441 C
1 C
18565442 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGATCAGGAATGAACTCCGTATG
Found at i:18566656 original size:876 final size:874
Alignment explanation
Indices: 18559058--18567761 Score: 10208
Period size: 876 Copynumber: 9.8 Consensus size: 874
18559048 NNNNNNNNNC
* * ** * *
18559058 CGGAACCCCAATGTCGTCGGTCAGGTTCAACGGTGATGCTCCGACGATGGTGCCCCGACGAAGAA
1 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* * * * *
18559123 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAACACTCGGTCC-GATCCGAT
66 AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGATCCTA-
* * *
18559187 CC-TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGAGGGTGCTCAG
130 CCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * **
18559251 CCGGCCAGAGGGGCGGGATTTTGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTATGCTGCCAAT
195 CCGGCCAGAGGGGCGGGA-TGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAAT
* * * * * *
18559316 CCTGCTACAGCAACCCTCAGTCCGGTTCAATCTTAGATTGGGAATGAACTCCGTATGGCTAAGCC
259 CCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
18559381 AACTGACGAAACTAGCATGCGGACGGGCGGG-CGGGCACTACGCAGACCAGAGAGATGGGATGCG
324 AACCGACGAAAC--G-A-GCGGGCGGGCGGGATGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* *
18559445 CAAGCC-ATGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCCGCATGCCAAT
385 CAAGCCGA-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
18559509 GCTATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCA
449 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * **
18559574 AGACGACTTGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTACGGTTCGAAATTTTTTAAAATT
514 AGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * *
18559638 TTTTCGGAAGGAGTTTTGG-CCCAAACCTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCAT
579 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCAC
*
18559702 AAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
643 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
18559767 TTTCAGACACTTTCATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
708 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* ** * *
18559832 TGTGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCAC
773 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
18559897 ACATCATGTGCGCACACCCCCTCGACCCCCCGATTGC
838 ACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGT
* *
18559934 CGGAACCCCAATGCCGCCGGTCAGGTTATCCGGTGATGCTCCGGCGA-GGTGGCCCCGACGAAGA
1 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGT-GCCCCGACGAAGA
* * * * *
18559998 AAAATGTGGCACCAGCACGTGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCAGTCTGATCCGAT
65 AAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC-G----G-T
18560063 CTTAGACTGGGAATGAACTCCTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
120 C-----C-----A-G-A-TCCTAC-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
18560128 CGAAACGAGCGTGTGGGTGCTCAGCCGGCCAGAAGGGCGGGATGCACAAACCGGGGATCGGTCGG
171 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGG
* * * * * *
18560193 GTCCCCCTCTGTGTACTGCCAATCCTGCTACCGCTACCCTCGGTCCGGTCTGATCTTAGACTGGG
236 GTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGG
* *
18560258 AATTAACTCCGTATGCCTAAGCCAACCGACGAAACTAGCGGGCGGGCGGGCA--GGCACTACGCC
301 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-ATGGGCACTACGCC
* * * * *
18560321 GGCCAGAGCGACGGGATGCGCAAGCCAAGGATCGATAGGGTGGTAAGTGGATTGAGGCACATCTT
365 GGCCAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
18560386 CATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
430 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
18560451 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
495 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGG
* * * * *
18560516 TTCGGGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGGCCCCAAACGTGGTAGACGTCATCCTTT
560 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * * *
18560581 TATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAACTATACAACATTTTGTGACCA
625 TA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * * *
18560646 TTTGAAAAAAGTGTCCCCATTTCGGACACTTTGATTGCTATTGACAGCAAACCTGTAAAATCTCA
689 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
18560711 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
754 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
18560776 AAGTACCAGCACCCATCACACATCATGTGCCCACACCCCGCCCTCGGCCCCCTCGATCG-
819 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCC-CGGCCCCC-CGATCGT
* * * * *
18560835 CTGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGTCTCGACAAAGA
1 C-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * *
18560900 AAAATGTGGCTCCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGAT
65 AAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G-T
* *
18560965 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCC
120 C-----C-----A-G-A-TCC-TA-CCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * * *
18561030 ACAAAACGAGCGTACGGCCACTCAACCGGCTAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCG
170 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCG
* *
18561095 GGTCCCCCTCTGCGTGCTG------C--C-A---CAACCCTCAG-CTGTTCTGATCTTAGACTGG
235 GGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGG
* * * * *
18561147 GAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGGAGGGTGGACGGACGGGCACTAC
300 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-CG--GGATGGGCACTAC
* * *
18561212 GTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
362 GCCGGCCAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
18561277 CTTCATATTTCTGCATGCAAATGCCATTTTTATGGCTCGTAAATTCATGCAATGGTCCCTTAAGC
427 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* ** * * *
18561342 CTTCACGTGAAGTTTAATGGTGAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAGCTTTTTG
492 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTA
** *
18561407 CGGTTTAGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
557 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
18561472 TTGTATTTTTGTTGGCATGCAAAAAAAAAGTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGA
622 TTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
** * *
18561537 CCATTTGAAAAAAGCATCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATC
686 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
18561602 TCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
751 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * *
18561667 GCCAACTACCAGCACCCATTGCACATCATGTGAGCACA-CCCCCCGACCCCCTTGATCGT
816 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGT
* ** * * * *
18561726 CGAAACCTTAATACCGCCGGTCAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGACGAAGAA
1 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAG-A
* * * * * *
18561791 AAAAT--GGTACCAGCACATGCTTGAGCCTAGCATGTGCTGCCGTAACCCTCGGT-CTGGT-CTG
65 AAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGATCCT-
* * * * * * *
18561852 ATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCCACGAAACAAACGTGCGGGTGTTCA
129 ACCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * * *
18561917 GCCGGCCAGAGGGGCGGGATAAGCAAGCCGAGGATCGGCCAGGTCCCCCTCTGCGTGATACCAAT
194 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAAT
* * ** * * *
18561982 CTTACTACCGCAACCCTC-GT-TCACTCCGATCTTATACTAGGAATGAACTCCGTGTGCCTAAGC
259 CCTGCTACCGCAACCCTCAGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * ** *
18562045 CAATCGACGAAAGGAGCGGGCAGGCGGTCGA-GCAGGCACTACGTTGGTCAGAGAGACGGGATGC
323 CAACCGACGAAACGAGCGGGCGGGCGG--GATG--GGCACTACGCCGGCCAGAGAGACGGGATGC
**
18562109 GCAAGCC-ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAA
384 GCAAGCCGA-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
18562173 TTCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
448 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * * *
18562238 AAGACGAATCGTTTTCGATTGTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTGAAAA-
513 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
*
18562302 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
578 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCA
** * * * **
18562367 CAAAAAAGGTCAACTAAAAACTCAAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGCATCCCC
642 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
18562432 ATTTC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
707 ATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * **
18562496 TGTGAGTTCTCGAGGTTTGATAAGGCATAGTTGGCCAATATAAGGGCCAAGTACCAGCACCCATC
771 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
*
18562561 GCACATCATGTGCGCACA-CCCCCCTGCCCCCTCGATCGT
836 GCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGT
* * * * **
18562600 CAGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCTCGGTGAAGAA
1 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* * * * *
18562665 AAATGTGGCACCAGCACATTCCCGAGCCCAGCATATGCTGCCACAACCCTCGGTCTAATCCGATC
66 AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTC-G--------G-TC
* * *
18562730 TTAGACTAGGAATGAACTCCGTATGCTTAGGCTTGGAATGAACTCCGTATGCCTAAGTCAACCCA
121 -----C-----A-G-A-TCC-TA-CCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * ** *
18562795 CGAAACGAACGTACGGGCCCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGACCGT
171 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGG
* * * * * * *
18562860 GTCCCCCTCTGTGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGG
236 GTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGG
** *
18562925 AATGAACTCCGTATGCCTAAGCCAACCGACGAATTGA--------ACGGG-T-GG------G-C-
301 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGATGGGCACTACGCCG
* *
18562972 G-TAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
366 GCCAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
18563036 ATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTC
431 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
18563101 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAATCTTTTTACGGT
496 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGT
** ** * * **** *
18563166 TCTTGATTTGTGAAAAATTTTTTAGAAATCCTTTTTTGGGCCCCAAACTTGGTAGACATGATCCT
561 TCGGGATTT-TTTAAAATTTTTTCGGAA-GGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCT
* *
18563231 TGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGAC
623 TGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * *
18563296 CATTTGAAAAAAGTGACCGCATTTCTA-AAACTTTCATGGCTACTGGCAGCAAACCTGTAAAATC
687 CATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
18563360 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
751 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * *
18563425 GCCAACTACCAGCACCCATTGCACATCATGTGAGCACA-CCCCCCGACCCCCTTGATCGT
816 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGT
* ** * * * *
18563484 CGAAACCTTAATACCGCCGGTCAGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGACGAAGAA
1 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAG-A
* * * * * *
18563549 AAAAT--GGTACCAGCACATGCTTGAGCCTAGCATGTGCTGCCGTAACCCTCGGT-CTGGT-CTG
65 AAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGATCCT-
* * * * *
18563610 ATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTCA
129 ACCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * **
18563675 GCCTGCTAGAGGGGCGGGATGCGCAAGCTGGGGATAGG-CTAGGTCCCCCTCTACATGCTGCTGA
194 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCAA
* * * ** * * *
18563739 TCTTACTACCGCAACCCTCGGT-TCACTCCGATCTTAGACTAGGAATGAACTCTGTGTGCCTAAG
258 TCCTGCTACCGCAACCCTCAGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
18563803 CCAATCGACGAAAGGAGCGGTCAGGCGGGCGGGCA--GGCACTACGTCGGTCAGAGAGACGGGAT
322 CCAACCGACGAAACGAGC-G---GGCGGGCGGG-ATGGGCACTACGCCGGCCAGAGAGACGGGAT
*
18563866 GCGCAAGCC-ATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTC-TGC
382 GCGCAAGCCGA-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGC
*
18563929 CAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
445 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
18563994 GGCAAGACGACTCGTTTTCTATTGTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTGAA
510 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAA
*
18564059 AA-TTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
575 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCAT
*
18564123 GCACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
639 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
18564188 CCCATTTCAGACACTTTAATGGCAACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
704 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * * *
18564253 GGTGTGAGTTCTCAAGGTTCGATGAGGGATA-GGGGCTAATATAAGGGCAAAGTATCAGCACCCA
769 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
18564317 TCGCACATCATGTGCGCACACCCCCTCCCGGCTCCCCCTATCGC
834 TCGCACATCATGTGCGCACA-CCCC-CCCGGC-CCCCCGATCGT
* * * * *
18564361 CGGAACCCTAATACCGCCGGCCAGGTTCTCCGGCGGTGCTCCGGCGATGGTGCCCCGATGAAGAA
1 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* *
18564426 AAATGCGGCACCAGCACATGC-CTAAGCCCACCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
66 AAATGCGGCACCAGCACATGCTC-GAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CGGT-C---
* *
18564490 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTCTGCCTAAGTCAACCC
121 C----A----G-AT---C-C--TA-CCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
18564555 ATGGAACGAGCATGCGGGCACTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCC-AGGGAT-GGAT
170 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGG-T
* * * * * * *
18564618 CGGGTCCACCTCTGTGTGTTGCCAATCCTGCTGCTGCAACCCT-TGATCTGGTCTGATCTTAGAC
233 CGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCAG-TCTGGTCCGATCTTAGAC
* * * * *
18564682 TGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAACGGGCGGGC-AGAAGGGCACTAC
297 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGATGGGCACTAC
* * * * *
18564746 GTCGGCCAAAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACAT
362 GCCGGCCAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
18564811 ATTCATATTTTTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
427 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
18564876 CTTCACATGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTA
492 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTA
* * * *
18564941 CTGTTCGGGATTTTTTGAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
557 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
18565006 TTGTAGTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
622 TTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
18565071 CCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATC
686 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
18565136 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
751 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
18565201 GCCAAGGACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGGCCCCCGATCGT
816 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGT
** * ** * * * *
18565260 CGGAACCTTAATGCCCCCAATCAAGTTCTCCGACGATGCTTCGGCGATGGTTCCCCGACGAAGAA
1 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* * *
18565325 AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTTCTACCGTAACCCTTGGTCCGGTCCGATC
66 AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCC----T-C-G---G-TC
*
18565390 TTAGACAAGGAATGAACTCCGTATGCTTAGA-TCGGGAATGAACTCCGTATGCCTAAGTCAACCC
121 -----C-----A-G-A-TCC-TA-CCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
18565454 ATGAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGGAAGCCGAGGATCAGTCG
170 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCG
* * * * * *
18565519 GGTCCCCCACTGCGTGCTGTCGATCCTACTACCGCAACCGTCAGTTTGGTCCGATC-T----T--
235 GGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGG
* *
18565577 --A-G-A---C-T-TGCCTAAGCCAACCGACGAAACGAGCGGAG-GGACGGGGTATGGGCACTGC
300 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-GCGGGC-GGG-ATGGGCACTAC
* * * *
18565632 ACCGGCTAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGCAGGTGGGTTTAGGTACAT
362 GCCGGCCAGAGAGACGGGATGCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
18565697 CTTCATATTTCTGCGTGCCAATGCCATGTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
427 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
18565762 CTTCACATGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
492 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTA
* * * * *
18565827 CGGTTCGGGATTTTTTCAAATTTTTTTGAAAGGAGTTTTGTCCCCAAACCTGGTAGACGTGATCC
557 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
18565892 TTGTATTTTTTTCG-ATGCACAGAAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGAC
622 TTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
18565956 CATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
687 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
18566021 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGCATAGGGGGCAAATATAAGGG
752 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
18566086 CTATGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGGCCCCCGATCGT
817 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGT
*** *
18566144 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTACCGATGGTGCCCCGATGAAGAA
1 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* *
18566209 AAATACAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TCCTAC
66 AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGATCCTAC
* *
18566273 CTTAGACTAGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
131 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
18566338 CGGCCAGAGGGGTGGGATGCGGAAGCCGAGTATCGGTCGGGTCCCCCTCTACGTGCTATCAATCC
196 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
** *
18566403 TGCTGTCGCAACCCTCAGTTTGGTCCGATCTTAGACT-GGAATTGAACTCCGTATGCCTAAGCCA
261 TGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAA-TGAACTCCGTATGCCTAAGCCA
* * *
18566467 ATCGACGAAACGAGCGGGGGGGGGCGGGGTATGGGCACTACGCCGACCAGAGAGACGGGATGCGC
325 ACCGACGAAACGAGC--GGGCGGGC-GGG-ATGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*** *
18566532 AAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTATATACATCTTCATATTTCTGCGTGCCAATGC
386 AAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
18566597 CATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACATGAAGTTTTATGGCAAG
451 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
18566662 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTT
516 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * *
18566727 TTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTATTTTTTTTTTGGGATGCACAG
581 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-GTATTTTTTTGGCATGCACAA
* *
18566792 AAAAATTCAGCTAAAAACTCAAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
645 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18566857 TCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
710 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * ** * *
18566922 AGATCTCGAGGTTTGACGAGGCATAGGGGGTAAATATAAGGGCCATGTACCAGCACCCATCACAC
775 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
18566987 ATCATGTGCGCACACCCTCCCCGGGCCCCCGATCGT
840 ATCATGTGCGCACACCC-CCCCGGCCCCCCGATCGT
* **
18567023 CAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCGTCGACGAAGAA
1 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
*
18567088 AAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCAG-T-CTGA
66 AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGATCCT-A
* * *
18567151 CCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAA
130 CCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
18567216 CCGACCAGAGAGGCAGGATGCGTAAGCC-AGGGATCGGCCGGGT-CCCCTCTGCGTGCTGTCGAT
195 CCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAAT
** ** * * *
18567279 CCTGCTGTCGTGACCCTCAATTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
259 CCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
18567344 CACCGACGAAACGAGCTGGG-GGGCGGGGTATGGGCACTACGCCGACCAGAGAGACGGGATGCGC
324 AACCGACGAAACGAGC-GGGCGGGC-GGG-ATGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
18567408 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGC
386 AAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
18567473 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
451 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
18567538 ACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
516 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
18567603 TTCGGAAGGAGTTTTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTTTTGGCATACACAG
581 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAA
* * *
18567668 AAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCTTT
645 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
18567733 TCATACACTTTAATGGCTACTGGTAGCAA
710 TCAGACACTTTAATGGCTACTGGCAGCAA
18567762 TGCCGCCGGT
Statistics
Matches: 6811, Mismatches: 785, Indels: 464
0.85 0.10 0.06
Matches are distributed among these distances:
856 2 0.00
857 167 0.02
858 144 0.02
859 5 0.00
860 3 0.00
861 1 0.00
863 104 0.02
864 3 0.00
865 1 0.00
866 1 0.00
867 2 0.00
868 1 0.00
869 6 0.00
870 2 0.00
871 1 0.00
872 3 0.00
873 10 0.00
874 411 0.06
875 491 0.07
876 746 0.11
877 86 0.01
878 347 0.05
879 421 0.06
880 190 0.03
881 7 0.00
882 10 0.00
883 76 0.01
884 630 0.09
885 18 0.00
886 251 0.04
887 1 0.00
888 4 0.00
889 36 0.01
890 124 0.02
891 21 0.00
892 4 0.00
893 7 0.00
894 454 0.07
895 1 0.00
896 193 0.03
897 48 0.01
898 241 0.04
899 248 0.04
900 335 0.05
901 422 0.06
902 236 0.03
903 129 0.02
904 163 0.02
905 3 0.00
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (874 bp):
CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGATCCTAC
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
TGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGATGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCCGGCCCCCCGATCGT
Found at i:18568297 original size:730 final size:728
Alignment explanation
Indices: 18567031--18568478 Score: 2206
Period size: 730 Copynumber: 2.0 Consensus size: 728
18567021 GTCAGAACCC
* * * * * *
18567031 CAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCGTCGACGAAGAAAAATGCGG
1 CAATGCCGCCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGACAAAGAAAAATACGG
* * * *
18567096 CACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGACCTTAGACTG
66 CACCAGCACATGCTCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCAGGCCGACCTTAGACTG
18567161 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCAGAG
131 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCAGAG
* * * * * **
18567226 AGGCAGGATGCGTAAGCCAGGGATCGGCCGGGTCCCCTCTGCGTGCTGTCGATCCTGCTGTCGTG
196 AGGCAGGATGCGAAAACCAGGGATCGACCGGGTCCCCTCTACGTGCTGTCGATCCTGCTGCCGCA
*** *
18567291 ACCCTCAATTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCACCGACGAAAC
261 ACCCTCAATCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
18567356 GAGCTGGGGGGCGGGGTATGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
326 GAGCTGGGGGGCGGGGTACGGGCACTACGCCGACCAGAGAGACGGGATGCGAAAGCCGTGGATCG
* *
18567421 ATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
391 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
**
18567486 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
456 TGTAAATTCATACAATCATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
*
18567551 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
521 TATTTTTCACGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
18567616 TTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTTTTGGCATACACAGAAAAATTCATCTA
586 TTGGCCCCAAACTTAGTAGACATGATCCCTGTATTTTTTTTGGCATACACAAAAAAATTCAGCTA
* * *
18567681 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCC-TTTTCATACACTTTA
651 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTT-AGACACTTTA
18567745 ATGGCTACTGGTAG
715 ATGGCTACTGGTAG
*
18567759 CAATGCCGCCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCC-CTGACAAAGAAAAATATG
1 CAATGCCGCCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCTC-GACAAAGAAAAATACG
* * * *
18567823 GCACCAGCACATGCTCGAGCCCAATATGTGCTGTCGCAACCCTCGGTCCGGGCCGATCTTAGACT
65 GCACCAGCACATGCTCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCAGGCCGACCTTAGACT
* * * * *
18567888 GGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCAGTCAGCCGACCCGA
130 GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCAGA
* * *
18567953 -AGGGCGGGATGCGAAAACCGGGGATCGACCGGGTCCCCCTTTACGTGCTG-CTGATCCTGCTGC
195 GA-GGCAGGATGCGAAAACCAGGGATCGACCGGGT-CCCCTCTACGTGCTGTC-GATCCTGCTGC
* *
18568016 CGCAACCCTCAGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
257 CGCAACCCTCAATCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
18568081 AAACGAGC-GGGCGGGCAGGCGG-GCGGGCACTACGTCGACGAGAGAGACGGGATGCGAAAGCCG
322 AAACGAGCTGGG-GGGC-GG-GGTACGGGCACTACGCCGACCAGAGAGACGGGATGCGAAAGCCG
* *
18568144 TGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
384 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
*
18568209 TATGGCTTGTAAATTGATACAATCATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
449 TATGGCTTGTAAATTCATACAATCATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
18568274 CGTTTTCTATTTTTCATGATTTTTGAAATTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGGA
514 CATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGGA
* * * **
18568339 AGGAGTTTTGGCCCCGAAGTTGGTAGACATGATCCCTGTATTTTTTTTGGCATGGACAAAAAAAT
579 AGGAGTTTTGGCCCCAAACTTAGTAGACATGATCCCTGTATTTTTTTTGGCATACACAAAAAAAT
*
18568404 TCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAATGTCCCCATTTTAGAC
644 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGAC
18568469 ACTTTAATGG
709 ACTTTAATGG
18568479 TTATTGGCAG
Statistics
Matches: 648, Mismatches: 64, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
727 2 0.00
728 203 0.31
729 92 0.14
730 345 0.53
731 6 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (728 bp):
CAATGCCGCCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGACAAAGAAAAATACGG
CACCAGCACATGCTCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCAGGCCGACCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCAGAG
AGGCAGGATGCGAAAACCAGGGATCGACCGGGTCCCCTCTACGTGCTGTCGATCCTGCTGCCGCA
ACCCTCAATCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGCTGGGGGGCGGGGTACGGGCACTACGCCGACCAGAGAGACGGGATGCGAAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATCATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
TATTTTTCACGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
TTGGCCCCAAACTTAGTAGACATGATCCCTGTATTTTTTTTGGCATACACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAA
TGGCTACTGGTAG
Found at i:18568797 original size:26 final size:26
Alignment explanation
Indices: 18568758--18568810 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18568748 CCAAGCTGAT
18568758 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
**
18568784 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
18568810 C
1 C
18568811 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:18570548 original size:26 final size:26
Alignment explanation
Indices: 18570519--18570571 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18570509 CTGATCCGAT
18570519 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18570545 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18570571 C
1 C
18570572 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18573056 original size:26 final size:26
Alignment explanation
Indices: 18573020--18573075 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
18573010 CCGATCTGAT
18573020 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18573046 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18573072 CTTA
1 CTTA
18573076 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18573575 original size:902 final size:901
Alignment explanation
Indices: 18570551--18574167 Score: 4694
Period size: 881 Copynumber: 4.1 Consensus size: 901
18570541 TATGCTTAGA
* **
18570551 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAAGCGGGCGGTCGGGCA
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-AGGCGGGCGGGCGG-CGGGCA
* * * * *
18570616 CTACGCCGGCCAGAGAGACGGGATGCGTAAGTCGTGGATCGATACGGTGGTAGGTGGGTTTAGGC
64 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGC
*
18570681 ACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
129 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
18570746 AAGCCTTCACGTGAAG-TTCATGGCAAGACAACTCGTTTTTTATTTTTCATGATTTTTGAAACTT
194 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTT
* * *
18570810 TTTACGGTTCCGGATTTTTGAAAATTTTTTTCG-AAGGAGTTTTGGCCCCAGACTTGGTAGACGT
259 TTTACGGTTCAGGATTTTTTAAAATTTTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * * *
18570874 GATCCTTTTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
323 GATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
*
18570939 TGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
388 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
18571004 AAATCTCAAATGCTC--T-------T-T-AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
453 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATA
* * ** *
18571058 TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTAGCCCCCCCGATCGTC
518 TAAGGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
* * * *
18571123 GGAACCCCAATGCCGTCGGTCAGGTTTTTCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
583 GGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * * * * *
18571188 TATGCGGCACCAGCACATGCTCGAGCTCAGCATGTACTGCCGTAACCCTTGATCCGATC----C-
648 AATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATCTGATCT
* * * *
18571248 --GA-T----CTG-A-TCC-TATGCTTAGAATAGGAATGAACTCCGTATGCTTAAGTCAACCCAT
713 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCAC
* * *
18571303 GAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGG
778 GAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGG
* * * *
18571368 TCCCCCTCTACATGCTGCCGATCCTGTTGCAGCAGCCCTTGGTCCGGT-TCGATCTTGGT
843 TCCCCCTCTACATGCTGCCGATCCTGCTGCAGTAGCCCTCGGTCTGGTCT-GATCTTGGT
* * *
18571427 CTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGCCGGTGGGCGTGCGGGCA
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-AGGCGGGCGGGCG-GCGGGCA
* * * *
18571492 CTACGACAGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGCGACAGGTGGGTTTAGGC
64 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGC
* *
18571557 ACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCCT
129 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
18571622 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
194 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTT
* ** * ** * *
18571687 TTTGCGGTTCAAAATTTTTTAAAATTTTTTTGGAAGCTGTTTTGGCCCAAAACTTGGTAGATGTG
259 TTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* ** *
18571752 ATCCTTGTATTTTTGTTGGCGTGCGGAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
324 ATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
* * *
18571817 GTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACTTGTAA
389 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
18571882 AATCTCAAAGGCTCTTTAAGGGGGTGTGAGCTCTAGAGGTTTGATGAGGGATAGGGGGCCAATAT
454 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATAT
* * *
18571947 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCGCCCGATCGCCG
519 AAGGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCG
*
18572012 GAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCT-------TCG-G---C-A--AAGAAAA
584 GAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAA
* * * * * *
18572063 ATATGGCACCAACACATGCCCAAGCCTAGCATGTGCTGCCGCAACCCTTGGTCCGGTCTGATCTT
649 ATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATCTGATCTT
* * * *
18572128 AGATTGGTAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
714 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACG
* * * * * * * * *
18572193 AAACGAGCGTGCGGGCACTCAACCGACCAAAGCGGCAGGATGCACAAGCC-AGGGATCGGCCGGG
779 AAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGG
* * * * * * * ** * * *
18572257 TCCCCTTCTGCGTGCTGCCAATCCTGCCGCCGTAACCCTCAATCTGGTCTAATCTTAGA
843 TCCCCCTCTACATGCTGCCGATCCTGCTGCAGTAGCCCTCGGTCTGGTCTGATCTTGGT
* * *
18572316 CTGGGAATGAACTCTGTATGCCTAGGCCAACCGACGAAAC--GA-GCGGGC--G-GGCAGGCACT
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGCGGGCGGGCGGCGGGCACT
* * * *
18572375 ACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGCAC
*
18572440 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
18572505 GCCTTCACGTTAAGTTTAATGGCAAGACGACTCTTTTTCTATTTTTCACGATTTTCAAAACTTTT
196 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTT
* * * *
18572570 TATGGTTCAGGATATTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACATGGTAGACATGAT
261 TACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
18572635 CCTTGTATTTTTTTTGGCATGCATAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTTT
326 CCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
*
18572700 GACCATTTGAAAAAAGTGTCCCCATGTT-AGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAA
391 GACCATTTGAAAAAAGTGTCCCCAT-TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
18572764 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATA
455 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATA
*
18572829 AGGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGG
520 AGGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGG
* * * * **
18572894 AACCCCAATGTCGTCGGTCAGGTTCTTCGGCGATGCTTTGGCGATGGTGCCCCGACGAAGAAAAA
585 AACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * * *
18572959 TGCAGCACCAGCACATGCTCGAGCCCAGCATGTGTTGCTGCAACCCTTGGTCCGATCTGATCTTA
650 TACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATCTGATCTTA
* *
18573024 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACAA
715 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGA
* * *
18573089 AACAAGCGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGATACGCAAGCCGAGGATCGGTCGGGTC
780 AACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTC
* * *
18573154 CCCCTCTACATGCTGTCGATCCTGCTACAATAGCCCTCGGTCTGGTCTGATCTTGGT
845 CCCCTCTACATGCTGCCGATCCTGCTGCAGTAGCCCTCGGTCTGGTCTGATCTTGGT
** * *
18573211 CTGGGAATGAACTCCGTATGCCTAATTCAACCGACGAAATGAGAGGGCGGGCGGGCGTGCGAGCA
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGA-GGCGGGCGGGCG-GCGGGCA
* * *
18573276 CTACGGCTGCCAGAGAGACAGGATGCGCAA-CCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGC
64 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGC
*
18573340 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTT
129 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
18573405 AAGGCTTCACGTTAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCATGATTTTTAAAACTT
194 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTT
* *
18573470 TTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTCGCCCCAAACTTGGTAGACGTG
259 TTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
18573535 ATCCTTGTGTTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAAGATTT
324 ATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTC-AAAGTGTACAAGATTT
* *
18573600 TTTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
388 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
18573665 AAATCTCAAATGCTCCTTAAGGGGGTGTGGGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATA
453 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATA
*
18573730 TAAGGGCCAAGTACCAGCACCCATCGTACACCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
518 TAAGGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
** *
18573795 GGAACCCCAATGCCGCCAGTCAGGTTCTCCAACGATGCTCCGGTGATGGTGCCCCGACGAAGAAA
583 GGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * **
18573860 AATACGGCACCAGCACATGGC-CGAGCCCAGTATGTGTTGTTGCAACCC-T--T--G----G---
648 AATACGGCACCAGCACAT-GCTCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATCTGATC
*
18573912 -T---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCTA
712 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCA
** ** * * * ** * * *
18573963 TAAAATGAGTGTACGGGCGCTCAGTCAACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATC-G
777 CGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGG
* * * * * * *
18574027 GTTCCCCTCTACGTGCTGCTGATCCTACTGTAGCAGCCCTCGGTCCGGTCTGATCTTGGT
842 GTCCCCCTCTACATGCTGCCGATCCTGCTGCAGTAGCCCTCGGTCTGGTCTGATCTTGGT
* * * *
18574087 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCAGACGGGCGTGCGGGCA
1 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-AGGCGGGCGGGCG-GCGGGCA
* *
18574152 CTACACTGGCCAGAGA
64 CTACGCCGGCCAGAGA
18574168 TGTGTACAAG
Statistics
Matches: 2395, Mismatches: 287, Indels: 118
0.86 0.10 0.04
Matches are distributed among these distances:
874 53 0.02
876 313 0.13
877 322 0.13
878 3 0.00
879 4 0.00
880 1 0.00
881 514 0.21
882 5 0.00
883 1 0.00
885 5 0.00
886 4 0.00
887 5 0.00
888 132 0.06
889 171 0.07
890 2 0.00
892 1 0.00
893 1 0.00
894 1 0.00
895 250 0.10
896 1 0.00
897 2 0.00
898 1 0.00
899 6 0.00
900 1 0.00
901 1 0.00
902 263 0.11
903 330 0.14
904 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (901 bp):
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGCGGGCGGGCGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTT
TACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGA
ACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
ACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAA
ACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCC
CCCTCTACATGCTGCCGATCCTGCTGCAGTAGCCCTCGGTCTGGTCTGATCTTGGT
Found at i:18574535 original size:26 final size:26
Alignment explanation
Indices: 18574506--18574558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18574496 CCAGTCAGAT
18574506 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
18574532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
18574558 C
1 C
18574559 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:18575429 original size:26 final size:26
Alignment explanation
Indices: 18575393--18575445 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18575383 CCAGTCCAAT
* * *
18575393 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
18575419 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
18575445 C
1 C
18575446 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:18576317 original size:26 final size:26
Alignment explanation
Indices: 18576288--18576366 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
18576278 CCTATCCGAT
*
18576288 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18576314 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18576340 CTTAGACTGGGAATGAACTCAATATG
1 CTTAGACTGGGAATGAACTCCATATG
18576366 C
1 C
18576367 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18577255 original size:26 final size:26
Alignment explanation
Indices: 18577226--18577275 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
18577216 CCGGTTTGAT
18577226 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
18577252 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
18577276 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:18578149 original size:26 final size:26
Alignment explanation
Indices: 18578113--18578165 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18578103 CTGGTCCGAT
*
18578113 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAAATTCGTATG
*
18578139 CTTAGACTGGGAATGAAATTTGTATG
1 CTTAGACTGGGAATGAAATTCGTATG
18578165 C
1 C
18578166 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATTCGTATG
Found at i:18579047 original size:26 final size:26
Alignment explanation
Indices: 18579007--18579059 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18578997 CCAGTCTGAT
*
18579007 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
18579033 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
18579059 C
1 C
18579060 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:18579929 original size:26 final size:26
Alignment explanation
Indices: 18579893--18579945 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18579883 CTGATCCGAT
*
18579893 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18579919 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18579945 C
1 C
18579946 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18580839 original size:26 final size:26
Alignment explanation
Indices: 18580788--18580840 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18580778 CCAGTCTGAT
* *
18580788 CTTAGACTGGGAATGGACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18580814 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18580840 C
1 C
18580841 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18582546 original size:900 final size:899
Alignment explanation
Indices: 18574169--18583365 Score: 11721
Period size: 886 Copynumber: 10.2 Consensus size: 899
18574159 GGCCAGAGAT
* * * *
18574169 GTGTACAAGATTTTGTGGCCATTTGAAAAAGGTGTCCCCATTTTAGACACTTTACTGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
18574234 CAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
18574299 GAGGGGGCCAACATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCGCACACCCCCCTGG
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGG
* * * * * * *
18574364 CCCCCCCAATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
195 -CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGCGATGGTG
* * * * * * *
18574429 CCCTGACGAAGAAAAATTCGGCACCAACACATGCCCAAGCCCAACATGTGCTGCCGCAAGCCTTG
259 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * **
18574494 GTCCAGTCAGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGC
324 GTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * *
18574559 CTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCC
389 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
** * * * * * * * * *
18574624 GGGGATCGGTCGAGTGCCCCTCTGCGTGCTGCCTATCCTACTGTCACAACCCTTGGTTTGGT-CT
454 GGGGATCGACCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCA
* * *
18574688 GATCTTAGACTGGGAATGAACTCCGTATACCTCAGCCAACCGATGAAACGAGCGG-GCGGGGGGG
519 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGC-GGGGGG
*
18574752 CGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
583 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18574817 TTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
648 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
18574882 TCCCTTAAGCCTTCACGTTATGTTTAATGGCAAGACGACTCGTTTTGTATTTTTCATGATTTTTG
713 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * *
18574947 AAAATTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATCGTA
778 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
18575012 GACATGATCCTTCTATTTTTATTAGCATGCAAAAAAAAATTCAGCTAAAAACTCGAA
843 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
18575069 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * * *
18575134 CAACAAACCTGAAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
18575199 TAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCGGC
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGC
* * * * *
18575264 CCCCCGATCGCCGGAACCTCAAAGCCGCC-G--A---TCAT----G-TTCTCCGGCGATGGTGCC
196 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGCGATGGTGCC
* * * * * **
18575318 CCGACGAAGAAAAATGTGGCACTAGCACATGCTCGAGCCTAGCTTGTGCTGCCGCAACCCTCGAC
261 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
18575383 CCAGTCCAATCTTAGATTGGGAATGAACT-TCGTATGCTTAGACTGGGAACGAACTCCGTATGCC
326 CCAGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCC
* *
18575447 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCG
390 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * ** * *
18575512 GGGATTGGCCGGGT-CCCCTCTATGTTCTATCGATCCTGCTGCCGTAACCCTCGGTC-GGATCTA
455 GGGATCGACCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGG-TCCA
* *
18575575 G-TCTTAGACTGGCAATGAACTCCGTATGCCTCAA-CCAACCGATGAAACGAGCGG-GCGGGTGG
519 GATCTTAGACTGGGAATGAACTCCGTATGCCT-AAGCCAACCGACGAAACGAGCGGCGCGGG-GG
* *
18575637 GCGGGCACTATGCCGGCCAGGGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
582 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
18575702 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATA
647 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
18575767 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAATGATTTTC
712 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
18575832 AAAACTTTTGT--GGTTCGGGACTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTGG
777 GAAACTTTT-TACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
* * *
18575895 TAGACATGATCCTTGTATTTTTGTTGGTATGCATAAAAAAATTCAGCTAAAAACTCGAA
841 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
18575954 GTGTACAAGATTTTGT-AGCCATTTGAAAAAA-TGTCCCAATTTCAAACACTTTAATGGCTACTG
1 GTGTACAAGATTTTGTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
18576017 GCAGCAAACCTGTAAAATCTCAAATACTC-TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
65 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
** * *
18576081 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACAAATCGCACATCATGTGCACACACCCCCCGG
130 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGG
* * * * *
18576146 CCCCCCCGATCGTCAGAACCCCAATACCGCCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTG
195 -CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGCGATGGTG
* * *
18576211 CCCC-AGGGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTC
259 CCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
*
18576275 GGTCCTA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATAT
323 GGTCC-AGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAA--C----T
* *
18576339 GCTTAGACTGGGAATGAACTCAATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAG
381 -C-----C-------G-------TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
18576404 CCAGCCAGAGGGTCGCGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATC
426 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCTACGTGCTGCCGATC
* * * *
18576469 CTGCTGCCGCAACCCTTGGTCTGATCC-GATCTTAGACTGGAAATGAACTTCGTATGCCTAAGCC
491 CTGCTGCCGCAACCCTCGGTCTGGTCCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
18576533 AACGGACGAAACAAGCGGGCGGAAAGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
556 AACCGACG--A-AA-CGAGC-----GGC--GCGGG-GGGCGGGCACTACGCCGGCCAGAGAGACG
* *
18576598 GGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCAT
609 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
*
18576663 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTC
674 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * **
18576728 ATGGCAAGACGACTCGTTTTCTATTTTCCACGATTTTCGAAACTTTTTGCGGTTCAAGATTTTTT
739 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTT
* **
18576793 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGTTGTGATCCTTGTATTTTTGTTGG
803 TAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
18576858 CATGCA-TAAAAAATTTAGCTAAAAACTCGAA
868 CATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18576889 ATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
18576954 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
18577019 TAGGGGGGCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGCGCACACCCCC-G
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCGCACACCCCCTG
* * * *
18577083 GCACCCCCGATCGTCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGGCGATGATCCGGTGATGGT
194 GC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGCGATGGT
* * * * ** * * * * *
18577148 ACCCTGACGAATAAACATGCGGCACTGGCACATGGCCGAACCCAGCATGTGCTGTCACAACACTC
258 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* ** * *
18577213 GGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATG
323 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
18577278 CCTAAGTCCACCCATGAAACGAGAGTGCGGGCGCTTAGCTGGCCAGAGGGGCGGGATGCACAAGC
388 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * * * * * *
18577343 CGGGGATTGATCGGGTCTCACTCTGCGTGCTGCCGATCCTACTGTCGTAACCGTCAGTCTGAT-C
453 CGGGGATCGACCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCC
* * * * *
18577407 TGATCTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGC-CGGGCAG
518 AGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGCGGG-GG
* * * * *
18577470 GCGGGCACTACGCCAGCCGGAGAGACGGGATGCACAAGCCATGGACCGATAGGGTGGTAGGTGGG
582 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
18577535 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCTTACAATC
647 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
18577600 GTCCCTTAAGCCCTCACGTGAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
712 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
18577665 GAAACTTTTTACGGATCGGGATTTTTTAAAATTTTTTCGGAAA-TATTTTTGGCCCCAAACTTGG
777 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGG
* * *
18577729 TAGACATGATCCCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
841 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18577788 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18577853 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTTGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
** *
18577918 TAGGGCACCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCG
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCT-G
* *
18577983 G-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC-TC--C-A-------GCGATGGTG
194 GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGCGATGGTG
** * * ** *
18578036 CCCCGGTGAAGAAAAATGCAGCACCAACACATGCCTAAGCCCAGCATGTGCTGCCGCACCCCTCG
259 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
** * **
18578101 GTCTGGTCCGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACTGGGAATGAAATTTGTATG
324 GTCCAGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
18578165 CCTAAGTAAACCCACAAAACGAGCATACGGGTGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGC
388 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * ** * * * *
18578230 CGGGGATCGATCGGGTCCCCCTCGACGTGCTATCGATCCTACTACCGTAACCCTCTGTCTGGTCC
453 CGGGGATCGACCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCC
* * *
18578295 A-ATCTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAACCGACAAAACGAGCGGGCGGGTTGG
518 AGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGCG--GG
* *
18578359 CGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
580 -GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
18578424 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACA
644 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
18578489 ATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATT
709 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** *
18578554 TTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
774 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
*
18578619 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAGAAAAAATTCAGCTAAAAACTCGAA
839 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACA-AAAAAATTCAGCTAAAAACTCGAA
* *
18578682 GTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTGTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18578747 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
18578812 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGG-
18578877 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-TC--CGA--------CGATGGTGC
195 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGCGATGGTGC
* * * ** *
18578931 CCCGACGAAGAAAATTGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCAACCGCAACCCTTGG
260 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
18578996 TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTTCGTATGCC
325 TCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
18579061 TAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCTGGATGCGCAAGCTG
390 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * *
18579126 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCTGGTCCA-
455 GGGATCGACCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAG
* *
18579190 ATCTTAGATTGGGAATGAACT-CGATATGCCTAAGCCAACCGACGAAACAAGCGG-GC---GGGC
520 ATCTTAGACTGGGAATGAACTCCG-TATGCCTAAGCCAACCGACGAAACGAGCGGCGCGGGGGGC
* * ** *
18579250 GGGCACTACGCCGGCCAAAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGCAATGTGGGTT
584 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *** *
18579315 TAGGAACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCT
649 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
18579380 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGA
714 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * * * *
18579445 AACCTTTTCCGTTTCGGGATTTTTAAAAATTTTTTTTG-ATGGAGTTTTTGCCCCAAACTTGGTA
779 AACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * ** * * *
18579509 AACGTGATCATTGTAATTTTT-TTGAAATGCATAAAAAAATTCAGCCAAAAAATCGAA
843 GACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18579566 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
18579631 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* ** *
18579696 TAGGGGGCCAATATAAGGGCCATGTTGCAGCACCCATCGCACATCATGTGTGCACA--------C
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGC
* * **
18579753 CCCCCGATCGTCGGAACCCCAATGCGGCCGGTCAGGTTCTTCGGTGATGCTCTTGCGATGGTGCC
196 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGCGATGGTGCC
* * *
18579818 CC-AGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGG
261 CCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
*
18579882 -CCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
325 TCCAG-TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
18579946 CTAAGTCAACCCATGGAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAGGCGCAAGCC
389 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * * ** * *
18580011 GGCGATCGGTC-AGGTCCCACTCTACGTACTGCCAATCCTGCTGCCATAATCCTTGGTCTGGT-C
454 GGGGATCGACCGA-GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCC
* * * * *
18580074 TGATCTTAGACTAGGAATCAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGG-GC---GGG
518 AGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGCGGGGGG
* ** * *
18580135 AGGGCACTACGTTGGCTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
583 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * **
18580200 TTAGGCACATCTTCATATTTCTGAATGCCAATGCCATGTTTATGGCTTGTAAATTCATATGATGG
648 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
18580265 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
713 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * *
18580330 AAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGATTTTTTGTCCCAAACTTGGTA
778 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
18580395 GACGTGATCCTTGTATTTTCT-TTGGGATGCTCATAAAAATTCAGCTAAAAACTTGAA
843 GACGTGATCCTTGTATTTT-TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
18580452 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTTAATGGCTACTG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTG
* *
18580516 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
65 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
18580581 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCTGG
130 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGG
* * * * * *
18580646 TCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTTTGGTGATGCTCCAGCGATGGTA
195 -CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGCGATGGTG
* *
18580711 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCCTCG
259 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
18580776 GTCCAGTCTGATCTTAGACTGGGAATGGACT-TCATATGCTTAGACTGGGAATGAACTCCGTATG
324 GTCCAGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
18580840 CCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGCGGGATGCGCAAGT
388 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * * *
18580905 TGGGGATCGACC-AGGTCCCCCTCTGCGTGTTGCTGATCCTGCTACCACAACCCTTGATCCGGT-
453 CGGGGATCGACCGA-GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTC
* * *
18580968 CTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGG-GC---GA
517 CAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGCGGGGG
* * *
18581029 ACGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
582 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
18581094 TTTAAGGCACATCTTCATATTTTTGCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAAT
647 TTT-AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
18581158 GGTCCCTTAAGCCTTCACGGTGAAG-TTCTTGACAAGACGACTTGTTTTGTA-TTTTCACGATTT
711 GGTCCCTTAAGCCTTCAC-GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * **
18581221 TTCAAA-TTTTTGGCGGTTCGGGA-TTTTTAAAA-TTTTTCGGAAAGAAGTTTTCACCCCAAACT
775 TTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACT
* * *
18581283 TAGTAGAACGTGATCCTTGTATTTTTTTTTGGGCATGCACAAAAAAATACAGCTAAAAACTCGAA
838 TGGTAG-ACGTGATCCTTGTA-TTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
18581348 CGTGT-CAAGATTTTGTGACCAATTCGAAAAACGTGTCCCAATTTCAGACAC-TT-ATGGCTACT
1 -GTGTACAAGATTTTGTGACC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
18581410 GG-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGGCGAGTTCTC-AGGTTTGATGAG
64 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCGAGGTTTGATGAG
** * *
18581473 GGATAGGGGGCCAATATAAGGGCC-AGTCACCAAGCA-CCATTACACATCAGGTGCCGCACACAC
128 GGATAGGGGGCCAATATAAGGGCCAAGT-ACC-AGCACCCATCGCACATCATGTG-CGCACACCC
* * * * *
18581536 CCTCGG-CCCCCGATCGTCGGAA-CCCAATGACACCGGTCAGGTTCTCCAGCGATGCTCCGACGA
190 CCT-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGCGA
* * * * *
18581599 TGGTGCCCTGACGAGGAAAAATGAGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAAC
254 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * * *
18581664 CATCGGTCCAGTCCAATCTTAGGCTGGGAACGAACTCTATATGCTTAGACTGGGAATGAACTCCG
319 CCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCG
* * ** * * * * * *
18581729 CATACCTAAGTCAACTAATGAAACGAGAGAGCGGGCGCTCAGTCAGCCAGAGGGGTGGGATGCGC
384 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * * **
18581794 AAGTCGGCGATCGACCGAGTCCCTCTCTACGTGCTGCCGATCTTGTTGTCGCAACCCTCAATCTG
449 AAGCCGGGGATCGACCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
* * * * *
18581859 ATCCAG-TCATAGACTAGGAACGCACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCCGC
514 GTCCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-CGC
* * * *
18581923 GGGTGGGTGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTA
577 GGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
18581988 GGTGGGTTTAGGCACTTCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
641 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
18582053 GCACTGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCCTTTTTTATTTTTCACG
706 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * **
18582118 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG-GTTTTAGCCATAAA
771 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
18582182 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAA
836 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18582245 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
18582310 CAGCAAACGTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGAGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
18582375 TAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGC
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGC
* * * *
18582440 CCCATCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATACTCCGGCGATGGTGC
196 CCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGCGATGGTGC
* * ** * *
18582505 CCTGGCGAAGAAAAATGCGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCGTAACCCTCCG
260 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * * * * **
18582570 TCCTA-TCTGATTTTAGACTAGCAATGAACTCCGTATGCTTATACTGGGAATGAACTCCATACAC
325 TCC-AGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
*
18582634 CTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCC
389 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * * *
18582698 GAGGACCGGCC-AGGTCCCCCTCTATGTGCTGTCGATCC-GACTGCTGCAGCCCTCGGTCCGGTC
454 GGGGATCGACCGA-GTCCCCCTCTACGTGCTGCCGATCCTG-CTGCCGCAACCCTCGGTCTGGTC
* *
18582761 C-GGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCAGGCGG
517 CAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGC--GCGG
* * * * *
18582825 GCGGGCGGGTACTACGCCGGCTAGAGTGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTATG
579 G-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
**
18582890 TGGGTTTAGGTGCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
643 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
18582955 AATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGAT
708 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * * * * * **
18583020 TTTCAAAAGTTTTTGCAGTTCGGGATTTTTTTAAATTTTTTC-AGAAGCATTTTTTACCCCAAAC
773 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAAC
* * *
18583084 TTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAGCTCGAA
837 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18583147 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
18583212 CAGCAAACCTGTAAAATCTCTAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
18583277 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGTCG
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-T-G
* *
18583342 GCCCCCCGATCGCCGAAACCCCAA
194 GCCCCCCGATCGTCGGAACCCCAA
18583366 AACTTTAATG
Statistics
Matches: 7268, Mismatches: 846, Indels: 363
0.86 0.10 0.04
Matches are distributed among these distances:
875 39 0.01
876 2 0.00
878 2 0.00
883 93 0.01
884 279 0.04
885 158 0.02
886 1236 0.17
887 434 0.06
888 39 0.01
889 3 0.00
890 3 0.00
891 3 0.00
892 277 0.04
893 349 0.05
894 673 0.09
895 612 0.08
896 123 0.02
897 80 0.01
898 181 0.02
899 672 0.09
900 702 0.10
901 91 0.01
902 228 0.03
903 22 0.00
904 6 0.00
907 4 0.00
908 2 0.00
909 1 0.00
911 30 0.00
912 118 0.02
914 1 0.00
919 1 0.00
921 79 0.01
922 74 0.01
923 1 0.00
924 1 0.00
925 2 0.00
926 5 0.00
931 3 0.00
932 1 0.00
933 1 0.00
934 198 0.03
935 58 0.01
936 129 0.02
937 83 0.01
938 157 0.02
939 12 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGC
CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGCGATGGTGCC
CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
CCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
GGATCGACCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAGA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGCGGGGGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
Found at i:18583594 original size:26 final size:26
Alignment explanation
Indices: 18583558--18583609 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18583548 CCGATCCGAT
* *
18583558 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
18583584 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
18583610 TCTGAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:18584483 original size:26 final size:26
Alignment explanation
Indices: 18584447--18584499 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18584437 CCGGTCTGAT
*
18584447 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18584473 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18584499 C
1 C
18584500 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18585222 original size:26 final size:26
Alignment explanation
Indices: 18585186--18585237 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18585176 CCGATTTGAT
* * *
18585186 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATCAACTTCATATG
18585212 CTTAGACTGGGAATCAACTTCATATG
1 CTTAGACTGGGAATCAACTTCATATG
18585238 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTTCATATG
Found at i:18586967 original size:26 final size:26
Alignment explanation
Indices: 18586928--18586980 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18586918 CTGATTTGAT
**
18586928 CTTAGACTTTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18586954 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18586980 C
1 C
18586981 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18587401 original size:902 final size:897
Alignment explanation
Indices: 18586061--18587859 Score: 2572
Period size: 902 Copynumber: 2.0 Consensus size: 897
18586051 CGATCCAATT
* * * **
18586061 TTAGACTACGAATGAACTCCGTTTTCCTAAGTCAACCCACGAAAGGAGCATGCGATCACTCAGTC
1 TTAGACTACGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCATGCGAGCACTCAACC
* ** *
18586126 GGCCAGAGGGGTGGGATGCGCAAGCCAAGGATCAGTCGAGTCCCCCTCTGCGTGCTGCCGATCCT
66 GGCCAGAAGGACGGGATGCGCAAGCCAAGGATCAGTCGAGTCCCCCTCTGCATGCTGCCGATCCT
* *
18586191 GCTGCCGCAACCCTCGGAACGGTCCAATCTTGGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTGCCGCAACCCTCGGAACGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
18586256 CAACGAAATGAGCAGGCAGGCGGGCATTACGCCGGCTATAGAGACGGGATGTGCAAGCCGTGGAT
196 CAACGAAATGAGCAGGCAGGCGGGCATTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGAT
18586321 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
*
18586386 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACAACTCGTTT
** * * *** * * * *
18586451 TTTATTTTTCATGATTTTCAAAACTTTTTCCAGTTTGGGATTTTTTAAAATTTTTTCGGCAGGGG
391 TCCATTTTTCACGATTTTCAAAACTTTTTACAGTTCAAGATGTTTTAAAATTTTTTCGGAAAGAG
* ** *
18586516 TTTTGGCCCCAAACGTGGTAGACGTGATCCCTGTATTTTTTTTGGTGTGCAC-AAAAAATTTCAG
456 TTTTGGCCCCAAACGTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAAATTCAG
* * * * *
18586580 CTAAAAACTCGAAGTGTACAAGATTTGGTGGCCA-TTCGAAAAAATTGTCCCCATTTCAGACACT
521 -TAAAAACTCGAAGTGTACAAGATTTGGAGACCACTT-GAAAAAAGTATCCCCATGTCAGACACT
* *
18586644 TTAATGGCTATTGGCAGCAATCCTGTAAAATCTCAAATGCTCTTTAAG-GGGCTATGAGTTCTTG
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGG-TATGAGTTCTTG
18586708 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** *
18586773 CGCACA-CCC-CCCGG-CCCCCCGATCGCCAGAACCCCAATGCCGTTGGTCAGGTTCTCCGGCT-
713 CGCACACCCCTCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGCTCAGGTTCTCCGG-TG
* * * * *
18586834 ATGCTCCGGTGATGGTGCCTCGGTAAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATG
777 ATGCTCCGGCGATGGTGCCCCGATAAAGAAAAATGCGACACCAGCAAATGCACAAGCCCAGCATG
* * * ** **
18586899 TGCTGTTGCAACCCTCGGTCTGATTTGATCTTAGACTTTGAATGAACTCCGTATGC
842 TGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGC
** * *
18586955 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCACTCAACC
1 TTAGACTACGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCATGCGAGCACTCAACC
** * *
18587020 GGCCAGAAGGACGGGATGCGCAAGCCGGGGATCGGTC-AGGTCCCCCTCTGCATGCTGCTGATCC
66 GGCCAGAAGGACGGGATGCGCAAGCCAAGGATCAGTCGA-GTCCCCCTCTGCATGCTGCCGATCC
* ** * * *
18587084 TGCTGCTGCAACCCTCGGTCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGGAACGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* *
18587149 CCGACGAAATGAGCGGGCGGACGGGCGAGTGGGCACTT-CGCCGGCCAGAGAGACAGGATGCGCA
195 CCAACGAAATGAGCAGGC--A--GGC----GGGCA-TTACGCCGGCCAGAGAGACAGGATGCGCA
* ***
18587213 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGGGTGCCAATGCC
251 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
18587278 ATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTCCATGGCAAGA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGA
* * * *
18587343 CGACTCGTTTTCCATTTTTCACGATTTTCGAAACTTTTTACGGTTCAAGATGTTTTAAAGTTTTT
381 CAACTCGTTTTCCATTTTTCACGATTTTCAAAACTTTTTACAGTTCAAGATGTTTTAAAATTTTT
* * * * *
18587408 TCGGAAATAGTTTTGGTCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
446 TCGGAAAGAGTTTTGGCCCCAAACGTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAA
*
18587473 AAAAATTCAGTAAAAACTCGAAGTGTACAAGATTTTGAGACCACTTGAAAAAAGTATCCCCATGT
511 AAAAATTCAGTAAAAACTCGAAGTGTACAAGATTTGGAGACCACTTGAAAAAAGTATCCCCATGT
* *
18587538 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTTGGTGTGA
576 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTATGA
18587603 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
641 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
18587668 TCATGTGCGCACACCCCTCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGCTCAGGTTCT
706 TCATGTGCGCACACCCCTCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGCTCAGGTTCT
* * * * *
18587733 CCGGTGATGCTTCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACTAGCAAATGCACGAGCCC
771 CCGGTGATGCTCCGGCGATGGTGCCCCGATAAAGAAAAATGCGACACCAGCAAATGCACAAGCCC
18587798 AGCATGTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGC
836 AGCATGTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGC
18587860 CTAAGCCAAC
Statistics
Matches: 795, Mismatches: 93, Indels: 23
0.87 0.10 0.03
Matches are distributed among these distances:
893 1 0.00
894 183 0.23
896 1 0.00
898 3 0.00
902 437 0.55
903 20 0.03
904 6 0.01
905 144 0.18
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (897 bp):
TTAGACTACGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCATGCGAGCACTCAACC
GGCCAGAAGGACGGGATGCGCAAGCCAAGGATCAGTCGAGTCCCCCTCTGCATGCTGCCGATCCT
GCTGCCGCAACCCTCGGAACGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
CAACGAAATGAGCAGGCAGGCGGGCATTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACAACTCGTTT
TCCATTTTTCACGATTTTCAAAACTTTTTACAGTTCAAGATGTTTTAAAATTTTTTCGGAAAGAG
TTTTGGCCCCAAACGTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAAATTCAG
TAAAAACTCGAAGTGTACAAGATTTGGAGACCACTTGAAAAAAGTATCCCCATGTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTATGAGTTCTTGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCTCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGCTCAGGTTCTCCGGTGATGC
TCCGGCGATGGTGCCCCGATAAAGAAAAATGCGACACCAGCAAATGCACAAGCCCAGCATGTGCT
GTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGC
Found at i:18592038 original size:26 final size:26
Alignment explanation
Indices: 18592009--18592064 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18591999 CCGGTCTGAT
* *
18592009 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18592035 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18592061 CTTA
1 CTTA
18592065 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18593814 original size:26 final size:26
Alignment explanation
Indices: 18593778--18593829 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18593768 CCGATCTGAT
*
18593778 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
18593804 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18593830 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18594210 original size:869 final size:869
Alignment explanation
Indices: 18591226--18600864 Score: 9971
Period size: 895 Copynumber: 10.9 Consensus size: 869
18591216 AGGGATCGGT
* * * * * *** ** *
18591226 CGGGTCACCCTCTGTGTGCTGTCGATCCTGCAGCCACAACCCTCAGTCCAATCCAATCTTAGACA
1 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACT
* * * * *
18591291 AGGAATGAACTTCGTATACCTAAGCCAACCAACGAAACGAGCGGGTGGCCGGGCGGGCGGGCA-T
66 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGC-GGC-GGCACT
* *
18591355 CACGCCGGCCAGAGAGACGAGATGCGCATGCCGTGGATCGA-AGGGGTGGTAGGTGGGTTTAGGC
128 -ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGGTGGTAGGTGGGTTTAGGC
* * *
18591419 ACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGACCCTT
191 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * ** *
18591484 AAGCCTTGACGTGAAGTTTCATGGCAAGATGACTCGTTTTATATTTTTCACGATTTTCAAAACCT
256 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
18591549 TTTGCGGTTTGAGAATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTCGATAGACGTG
321 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * ** * * * *
18591614 ATCCCTGTATGTTTGTTTTCTTGGAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTG
386 ATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
** *
18591679 TGATGATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
451 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
18591744 A--TCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
516 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
18591807 AGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACAGCCCCCCGACCCCCCCGATCGTCG
581 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCG
* * *
18591872 AAACCCCAATGCCACCGGTCAGGTTTTTCGACGATGCTCGGGCGATGCTCCGGCAATGGTG-CCC
645 AAACCCCAATGCCGCCGGTCAGGTTCTTC--TGATGCTC---CGA-----C-G--ATGGTGCCCC
* * * * * * * *
18591936 GACGAAGAAAAATACGGTACCAGCACATGCCCAAGCCCAGCTTGTGCTACCGTAAACCTCTGTCC
697 GATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
18592001 GGTCTGATCTTAGACTGGGAATGAGCTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAA
762 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
*
18592066 GTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGG
827 GTCAACCCACGAAATGA--------GCG-T-----GGCC------G-GGGATGC---A-TCGA-G
18592131 ATCGG
866 ATC-G
* * *
18592136 TCGGGTCCCCCTCTGCGTGCTGCCAATCTTGCTGCCACAACCCTCGGTCTGGTCTAATCTTAGAC
1 -CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGAC
* *
18592201 TGGGAATGAACTCCGTATGCCGAAGCCAACCGATGAAACGAACGGCGGACGGGCGGACGGGCGGG
65 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-----G-CGGGCGG-CGGGC-GG
* *
18592266 CGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
121 C-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
18592331 TTAGGCACATCTTCATATTTCTGCATTCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGG
185 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
18592396 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
250 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
18592461 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACATGGTA
315 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
18592526 GATGTTATCCCTGTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
380 GACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
18592591 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAAAGGCTACTGGCAGCAAAC
444 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
18592656 CTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
509 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
18592721 GAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCACCCGCTGCCCCCCC
574 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC-C-GGCCCCCC
* ** * * * * *
18592786 CGATCG-CAGGAACCCCAATGCCATCGATCAAGTTCTCCGGCGATGCTCCGTCGATGGTGCCCCG
636 CGATCGTC-GAAACCCCAATGCCGCCGGTCAGGTTCTTC--TGATGCTCCGACGATGGTGCCCCG
* * *
18592850 ACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA-CC-C--T-C-
698 ATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
18592909 G---G-TC-----C-----A-G---TCCG-AT-CTTAGACTGGGAGA-GAACTCCGTATGCCTAA
763 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA-ATGAACTCCGTATGCCTAA
* * * *
18592953 GTCAACCCACGAAACGAGCGT-G-C-GGGATGCGTAAGCCAGGGAACGG
827 GTCAACCCACGAAATGAGCGTGGCCGGGGATGC---A-TC-GAGATC-G
* ** * * * * *
18592999 TCGGGTCACCCTCTATGTGCTGCCGATCCTACTGTCACAACACTCGGTCCGGTATGATCTTAGAC
1 -CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGAC
* * * * * * *
18593064 CGAGAATGAACTCTGTATACCTAAGCCAACCAACGAAACAAGCGGGTGGGCGGGCGGGCGAGCA-
65 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-CGGCGGGC-GGCG-GCAC
* * * *
18593128 TCACGCCGACCAGAGAGACGGGATGCGCATGTCGTGGAAT-GATGGGGTGGTAGGTGGGTTTAGG
127 T-ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG-ATCGATAGGGTGGTAGGTGGGTTTAGG
* ** * *
18593192 CACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGG-ACCT
190 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * **
18593256 TAAGCCTCTCACGTGAAGTTTTCATGGGAAGACGACTCGTTTTCTATTTTTCACG-GTTTCAAAA
255 TAAGCCT-TCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
18593320 CCTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-CCCAAACTTGGTAGAC
318 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
** * * *
18593384 GTGATCCTTGTATTTTT-TTTTCATGGA-AAAAAATTCTGCTAAAAACACGAAG-GT-C-AGATT
383 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
18593444 TTGTGACGATTTGAAAACAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
448 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
18593509 AAAATCTCAAATGCTTTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
513 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
18593574 ATAAGGGCCAAGTACCAGCACCCATCGCTCATCATGTGCGCGCACCCCCCGGCCCCCCCGATCGT
578 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* *
18593639 CGAAACCCCAATGTCGCCGGTCAGGATTTTCGGTGATGCTCGGGCAATGCTCCGGCGATGGTG-C
643 CGAAACCCCAATGCCGCCGGTCAGG---TTC--T--T-CT---G--ATGCTCCGACGATGGTGCC
* * * * *
18593703 CCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCTTGTGCTGTCGTAAACCTCTGT
695 CCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
18593768 CCGATCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGACT
760 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
*
18593833 AAGTCAACCCATGAAATGAGCGT-G-C-GGG-TGC-TC-A-A-C-
825 AAGTCAACCCACGAAATGAGCGTGGCCGGGGATGCATCGAGATCG
* * * *
18593869 CGGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCCACAATCCTCGGTCTAGTCTGATCTTAGACT
1 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACT
* * *
18593934 GGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGACGAGCGGTCGAGCACT
66 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGCGG-CG-GCACT
* *
18593999 ACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
128 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* **
18594064 ATCTTCGTATTTCTGCATTTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
193 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
18594129 GCCTTCACATGAATTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
258 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * * * * *
18594194 TACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACATGGTAAATGTTAT
323 TGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
*
18594259 CCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
388 CCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
18594324 GACCATTTCAAAAAAGTGTCCCCATTTAAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAA
452 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
18594389 TCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATCAGTGATAGGGGGCCAATATAA
517 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
18594454 GGGCCAAGTACCAGCACTCATCGCACATCATGTGTGCACACCCCCCAGGCCCGCCCGATCGTCGG
582 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGTCGA
* * * *
18594519 AACCCCAATACCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
646 AACCCCAATGCCGCCGGTCAGGTTCTTC--TGATGCTCCGACGATGGTGCCCCGATGAAGAAAAA
* * * ***
18594584 TACGACACCAGCACATGCTCGAGCCCAGTATGTGCTATTGCAACCCTCGGTCCGGTCTGATCTTA
709 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* ** *
18594649 GACTAGGAATGAACTCTATATGCTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCCATG
774 GACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* *
18594713 AAATGAGTGTGCGGGCGCTCAGCCGGTAAGAGGGGTGGGATACGTTAGCCGAGGATCG
838 AAATGA----GCGTG-GC-C-G--GG---GA----T--G---C---A-TCGA-GATCG
* * * * * * * * * *
18594771 ACTGGGTCCCACTCTGCATGCTGTCGATTCTACTGTCGCAACCCTCAGTCCGATCTGATCTTAGA
1 -C-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGA
* * ** *
18594836 CTGGGAATG-ACTCCGTATGCCTAAGCTAACTGACGAAACGAGCGACCAGGTGGGCGGGCGGGCA
64 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGC-GGC-GGCA
* * * * * *
18594900 CAACACCGGCCAGAGAGAGGGGATACGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGC
126 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* ** * * *
18594965 ACATCTTCATATTTTTGTGTGCCGATGCCATTTTTATGTCTTGTAAATTCTTACAATGGTCCCTT
191 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
18595030 AAGCCTTCACGTGAAGTTTCATGGTAGGACGACTCGTTTTCTGA-TTTTCATGATTTTTGAAACA
256 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCACGATTTTTGAAACT
* * ** * *
18595094 TTTTGCGGTTTGAGATTTTTTAAACTTTTTTTAGAAGGAGTTTTGGCCCCAAACGTGGTAGACAT
320 TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* **
18595159 GATCCTTGTATTTTTGTTGGCA-GACACAAAAAATTCACCTAAAAACTTAAAGTGTACAAGATTT
385 GATCCTTGTATTTTTGTTGGCATG-CACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
18595223 TGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTGGCAGCAAACCTGTA
449 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
18595288 AAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
514 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
18595353 TAAGGGCCAAGTACTAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCACCCCGATCATC
579 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* * *
18595418 GAAACCTCAATGGCGTCGGTCAGGTTCTTCAATGATGCTCCGACGATGGTGCCCCGATGAAGAAA
644 GAAACCCCAATGCCGCCGGTCAGGTTCTTC--TGATGCTCCGACGATGGTGCCCCGATGAAGAAA
* * *
18595483 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCT
707 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * *
18595548 TAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAAT
772 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * *
18595613 GAAACGAGCGTGCGAGCGCTCAACCAGTCGGAGGGGCGGGATGCGCAAGACGGGGATCG
837 GAAATGAGCGT----G-G------C---C------G-GGGAT--GC-A-TC-GAGATCG
** * * * *
18595672 ATCGGGTCCCCCTCTATGTGCTGTCGATCCTGCTGCCACAGCCCTCGGTCCGGTCTTATCTTAGA
1 --CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGA
* * * * * *
18595737 TTGGCAATGAAC-CTGTATGCCTAAGCCGACAGACGAAACGAGCGGACGGGCGGGCGGACTGGCA
64 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCGG-C-GGCA
* * *
18595801 CTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAAAAGGGTGGTAGGTGGGTTTAGGC
126 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
18595866 ACATCTTCATATTTCTG-TTGCCAATGCCATTTTTATGCCTTGTTAATTCATACAATGGTCCCAT
191 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
18595930 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCACGATTTTTGAAACTA
256 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
18595994 TTTGCGGTTCAAGATTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTAGGT----GTG
321 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
18596055 ATCCTTGTATTTTTCTTGGCATGCACATAAAAATTCAGCTAAAAACTCGAAGAGTACAAGAGTTT
386 ATCCTTGTATTTTTGTTGGCATGCACA-AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
18596120 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
450 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
18596185 AATCTCGAAA-GCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGGGGGCCAATA
515 AATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * *
18596248 TAAAGGCGAAGTACCAGAACCCATTGCACATCATGTGCGCACACCCCTCGGCCCCCCCGATCGTC
579 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* * * * * * *
18596313 GGAACCCCAATGCCGCCGCTCAGGTTCTGCGATGATGCTCCGACGATGCTACCCTGGTGAAGAAA
644 GAAACCCCAATGCCGCCGGTCAGGTTCTTC--TGATGCTCCGACGATGGTGCCCCGATGAAGAAA
* * * * *
18596378 AATACGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCCTGTCTGATCT
707 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * ** ** *
18596443 TAGACTGGGAATGAACTCCGCATGCCTAGACTGGGAATGAACTCTATATTACTAAGTCAACACAC
772 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
18596508 AAAACGAGCGTGCGGGTGCTCAGCCAGCAAGAAGGGCCAGATGCGCAAGCCAGGGATCG
837 GAAATGA----GC--GTG----G-C--C-----GGG---GAT--GC-A-TC-GAGATCG
* * *
18596567 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCGATCTGGTCTGATCTTAGA
1 --CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGA
* * * *
18596632 CT-GGAATGAGCTCCGTATGCCTAAGGCAACCAACGAAACGA-------GCGTGC-G-GGCACTA
64 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGCGGCACTA
* * *
18596687 TGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGGTTGGGCACA
129 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
18596752 TCTTCATATTTCTGCATGTCGATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAG
194 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * ** **
18596817 CCTTCACATTAA-TTTCATGGCAAGTTGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
259 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
*
18596881 GAGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
324 GCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
18596945 CCTTATATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTC-AGAGTGTACAAGATTTTG
388 CCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTG
* * * *
18597009 GGACCGTTTGAACAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAA
451 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
18597074 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
516 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
18597139 AGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCTCGGCCCCCCCCGATCGTCG
581 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCCGATCGTCG
* * * * * *
18597204 GAACCCCAATGCCGTCGGTCAGGTTCTT-TG--G---CGATGCT-CTG--GCGATG--G-----T
645 AAACCCCAATGCCGCCGGTCAGGTTCTTCTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAT
* * *
18597253 ---GC-CC--CA-A-CCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTTCGGTCTGATCTTAG
710 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
* * * * *
18597310 ACTGGGAATGAAATCCATATGCTTCGACTAGGAATGAACT-CGTATGCCTAAGTCAACTCACGAA
775 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
18597374 ACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGACGGGATGTGTAAGCCGGGAATCGG
840 ATGAGCGT----G-GC-C-G--GG---GA-TG-C---A----T----CGAG-ATC-G
* * * * * * * ** * *
18597431 TCGTGTCGCCCTTTGCATGTTGTCGATCCTGTTGCTGCAACCCTCGAT-TCAGTCTGATCTTAGA
1 -CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCT-GGTCTGATCTTAGA
* *
18597495 CTGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAACGAGC--G-GGCGGGC-G-GGCACTA
64 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGCGGCACTA
* *
18597555 CGCCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGCGTTTAGGCACA
129 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
18597619 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAG
194 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
18597684 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT
259 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * *
18597749 GCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCGGCCCCAAACTTGGTAGACGTGATT
324 GCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
18597814 CTTGTTTTTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGT
389 CTTG-TATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
18597879 GACCATTTGAAAAAATTGTCTTCAATTT-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
452 GACCATTTGAAAAAAGTGTC-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
** *
18597943 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGATATTATA
516 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * ** *
18598008 CGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCC-GACCCCTTGATCATCG
581 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGTCG
* * * * * * * * *
18598072 AAACCCCAATGTCGCAGGTCATGTTCTCCGGCGATGGTCCGACGATGGTGACCCGACGATGAAAA
645 AAACCCCAATGCCGCCGGTCAGGTTCTTC--TGATGCTCCGACGATGGTGCCCCGATGAAGAAAA
* ** * * ** **
18598137 ATGCAACACCAGCACATGCCCAAACCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCAATCTT
708 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* * *
18598202 AGACTGGGAATGAACTCCGTATGCGTAGACTGGGAATGAACTACGTAAGCCTAAGTCAACCCACG
773 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
*
18598267 AAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAACCGGGGATCGG
838 AAATGAGCGT----G-GC-C-G--GG---GA--TGC---AT-CG---A-----GATC-G
* * ** ** * **
18598326 CCCGGTCCCCCTCTACGTGCTATCGATCCTGCTGCCGTAACCCTCGGT-TCGATCCCATCTTAGA
1 -CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCT-GGTCTGATCTTAGA
* *
18598390 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGTGC-G-GGCACT
64 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCGGCGGCACT
* * * **
18598453 ATGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTTTGTTTAGGCAC
128 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
18598518 ATCTTCATATTTGTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAA
193 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * * **
18598583 GCCTTCAAGTGAAGTTTCATGGCAAGACGACCCATTTTTTATTTTAT-GTGATTTTTGAAACTTT
258 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT-TCACGATTTTTGAAACTTT
* * * * * *
18598647 TTGTGGTTCGAGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGG-CCCTAACTTGGCAGACGTGA
322 TTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
18598711 TCCTTGTATTTTTTTTGCCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACACGATTTTGT
387 TCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
18598776 GA-CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
452 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
18598840 TCTCAAATGCTCTTTCAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
517 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
18598905 GAGCCAAGTACCAGCACCCATCGCACATCATGT--GCACACACCCCGGCCCCCCCGATCGTCGAA
582 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAA
* * * *
18598968 A-CCCAATGCC-ACGGTCAGGTTC-TCCGA-----CG--GATGGTG-CCCGGTGAAGAAAAATGC
647 ACCCCAATGCCGCCGGTCAGGTTCTTCTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATAC
** * ** * *
18599022 GGCACCAGCACATGCTTGAGCCCAACATGTGCTTTCGCAACCCTCGGTCTGGTCCGATCTTAGAC
712 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC
*
18599087 TGGGAATGAACT-C-TATAGCTTAGACTGGGAATGAACT-CGTATGCCTAGGTCAACCCACGAAA
777 TGGGAATGAACTCCGTAT-GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG--A
* * *
18599149 CGAGCATGTGGGCGCTTAGCCGGCCAGAGGGATGCGCAAGCCAGGGATCGG
839 --A--A--TGAGCG--T----GGCC-G-GGGAT--GC-A-TC-GAGATC-G
* * ** * * *
18599200 CCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACCGTAAACCTTGGTCCGGTCTGATCTTAGAC
1 -CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGAC
* *
18599265 TGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGC--G-GGCGGGC-G-GGCACTAT
65 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGCGGCACTAC
** * ** *
18599325 GCCGGCCAGAGAGATAGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGCATTTAGGAACAT
130 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
18599390 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
195 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
18599455 CTTCACGTGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTTACGATTTTTGAAACTTTTTG
260 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* * * *
18599520 CAGTTCGGGATTTTTTTAAAGTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
325 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
18599585 TTGTATTTTT-TTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
390 TTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
18599649 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATC
454 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
18599714 TCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGCTTGATGAGGGACAGGGGGCCAATATAAGG
519 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
18599779 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCG-GAC
584 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAAC
* * * *
18599843 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTCCTG-CGATGGTGCCCCGACGAAGAAAAATA
649 CCCAATGCCGCCGGTCAGGTTCTTC--TGATGCTCC-GACGATGGTGCCCCGATGAAGAAAAATA
* ** *
18599907 CGGCACCAGCACATGCCCGA-CCCAGCATGTGCTGCCGCAACCCTCAGTCCATTC-AATCTTAGA
711 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGA
* * *** *** ** **** * **
18599970 CT-GGAATGAACTCCGTATGCCTAAGTCATCCCACCAAACAAGCG--TGCGGGCGCTCAGCCGGC
776 CTGGGAATGAACTCCGTATG-CTTAGAC-TGGGAATGAAC-TCCGTATGCCTAAG-TCAACCCAC
* * * ** * * *
18600032 CAGA-G-GGGTGGGATGCGCAAGC--CGAGGATCG
837 GAAATGAGCGT-GGCCGGGGATGCATCGA-GATCG
* * * * *
18600063 ACCGGGTCCCCCACTGCGTGCTACCGATCCTGCTGCCACAACCGTCGAT-TCGGTTTGATCTTAG
1 --CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCT-GGTCTGATCTTAG
* * **
18600127 ACTGGGAATGAACTCTGTATGACTAAGCCAACTAACGAAACGAGCGGGCAGACGGGCGGACGGGC
63 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G-AG-CGGGCGG-CGGGC
* * *
18600192 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTT
119 -GGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
18600257 GGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
182 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
18600322 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACCTCGTTTTCTATTTTTCATGATT
247 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCACGATT
* * *
18600386 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTT
311 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
18600451 GGTAGACATGATCCTTGTATTTTTCTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGT
376 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGT
*
18600516 ATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
440 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
18600581 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGA
505 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
18600646 GGGCCAATCTAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCA
570 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC
* * * *
18600711 CCCGATTGTCGAAACCCCAATGTCGTCGGTCAGG------T--T-CTCCGGCGATGGTGCCCCGA
634 CCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTTCTGATGCTCCGACGATGGTGCCCCGA
* * * * * * ** * * *
18600767 CGAAGAAAAATGCAGCCCCAGCACATGCCCGAGCCCAGCATCTACTTTCGCGACCCTCAGTTCGG
699 TGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
18600832 TCTGATCTTAGACTGGAAATGAACTCTGTATGC
764 TCTGATCTTAGACTGGGAATGAACTCCGTATGC
18600865 CTAAGACAAC
Statistics
Matches: 7469, Mismatches: 937, Indels: 681
0.82 0.10 0.07
Matches are distributed among these distances:
846 31 0.00
847 2 0.00
848 3 0.00
849 171 0.02
850 1 0.00
851 3 0.00
852 24 0.00
853 1 0.00
854 15 0.00
855 41 0.01
856 237 0.03
857 61 0.01
858 2 0.00
859 3 0.00
860 1 0.00
861 2 0.00
862 5 0.00
863 185 0.02
864 202 0.03
865 4 0.00
866 20 0.00
867 245 0.03
868 220 0.03
869 470 0.06
870 298 0.04
871 85 0.01
872 204 0.03
873 54 0.01
874 151 0.02
875 31 0.00
876 182 0.02
877 41 0.01
878 6 0.00
879 36 0.00
880 276 0.04
881 301 0.04
882 87 0.01
883 141 0.02
884 137 0.02
885 45 0.01
886 45 0.01
887 73 0.01
888 142 0.02
889 101 0.01
890 42 0.01
891 2 0.00
892 15 0.00
893 19 0.00
894 103 0.01
895 547 0.07
896 255 0.03
897 49 0.01
898 19 0.00
899 123 0.02
900 285 0.04
901 377 0.05
902 204 0.03
903 290 0.04
904 64 0.01
906 3 0.00
907 2 0.00
908 1 0.00
909 3 0.00
910 2 0.00
911 87 0.01
912 9 0.00
913 54 0.01
914 2 0.00
915 1 0.00
917 1 0.00
918 270 0.04
919 102 0.01
920 4 0.00
921 101 0.01
922 2 0.00
923 46 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (869 bp):
CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGCGGCACTACG
CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCC
CAATGCCGCCGGTCAGGTTCTTCTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
GTGGCCGGGGATGCATCGAGATCG
Found at i:18594696 original size:26 final size:26
Alignment explanation
Indices: 18594645--18594697 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18594635 CCGGTCTGAT
*
18594645 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
18594671 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
18594697 C
1 C
18594698 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18595575 original size:26 final size:26
Alignment explanation
Indices: 18595546--18595598 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18595536 CTGGTCCGAT
18595546 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18595572 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18595598 C
1 C
18595599 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18604248 original size:26 final size:26
Alignment explanation
Indices: 18604219--18604271 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18604209 CTGGTCCGAT
* * *
18604219 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
18604245 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
18604271 C
1 C
18604272 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:18604466 original size:12 final size:12
Alignment explanation
Indices: 18604449--18604473 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18604439 ACCGACGAAA
18604449 CGAACGGGCGGG
1 CGAACGGGCGGG
18604461 CGAACGGGCGGG
1 CGAACGGGCGGG
18604473 C
1 C
18604474 ACTACGCCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.28, G:0.56, T:0.00
Consensus pattern (12 bp):
CGAACGGGCGGG
Found at i:18605160 original size:26 final size:26
Alignment explanation
Indices: 18605122--18605174 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18605112 CCGGTCCGAT
* *
18605122 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18605148 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18605174 C
1 C
18605175 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18606062 original size:26 final size:26
Alignment explanation
Indices: 18606026--18606078 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18606016 CCGGTCCGAT
*
18606026 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18606052 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18606078 C
1 C
18606079 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18606957 original size:26 final size:25
Alignment explanation
Indices: 18606917--18606995 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 25
18606907 CTGGTCCAAT
18606917 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGG-AATGAACTCCGTATG
18606943 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTG-GAATGAACTCCGTATG
18606969 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
18606995 C
1 C
18606996 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
26 49 0.96
27 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:18607874 original size:26 final size:26
Alignment explanation
Indices: 18607845--18607895 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18607835 AATCCGATCA
* *
18607845 TAGACTGGGTATGAACTCCGTATGCT
1 TAGACTGGGAACGAACTCCGTATGCT
*
18607871 TAGACTGGGAACGAACTTCGTATGC
1 TAGACTGGGAACGAACTCCGTATGC
18607896 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAACGAACTCCGTATGCT
Found at i:18608756 original size:26 final size:26
Alignment explanation
Indices: 18608720--18608770 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18608710 CCTATCCAAT
18608720 CTTAGAATGGGAAAGAACTCCGTATC
1 CTTAGAATGGGAAAGAACTCCGTATC
* *
18608746 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGAATGGGAAAGAACTCCGTAT
18608771 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAAAGAACTCCGTATC
Found at i:18609657 original size:26 final size:26
Alignment explanation
Indices: 18609618--18609689 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
18609608 CTGATCCGAT
* *
18609618 CTTAGACTGTGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18609644 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18609670 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
18609690 TGTATGCCTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:18611212 original size:903 final size:900
Alignment explanation
Indices: 18600830--18611746 Score: 13648
Period size: 904 Copynumber: 12.2 Consensus size: 900
18600820 CCCTCAGTTC
* * * * * * *
18600830 GGTCTGATCTTAGACTGGAAATGAACTCTGTATGCCTAAGACAACTGATGAAACGAGCAGGCGGA
1 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GA
* * ** *
18600895 CGGGCGCGTGGGCACTACGCCGGCCAGAGAGATAGGATGCGCAAGCCATGGATCGATAGGGTGGT
65 C-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
18600960 AGGTGGGTTTACGCACATCTTCATATTTTTGCGTACCAATGCCATTTTTATGGCTTGTAAATTCA
129 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
18601025 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACCTCGTTTTCTATTTTTCA
194 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCA
* * * * * *
18601089 TGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTTGCCCCA
258 CGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
18601154 AACTTGGTACACGTGATCCTTGTATTTTTCTTGGCATGCA-AAAAACAATTCAGCTATAAAA-TC
323 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTA-AAAACTC
18601217 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
386 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
18601282 TGGCAGTAAACCTGTAAAATCTCAAATGCACTTTATGGGGGTGTGAGTTCTTGAGGTTTGATGAG
451 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
18601347 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCT
516 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * * *
18601412 GACCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGGCGATGC
581 GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGG
* *
18601477 TGCCCCGACGAAGAAAAATGCGGCACAAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
646 TGCCCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * * * *
18601542 CGATCTAGTGCAATCTTAGACGGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCAA
710 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
*
18601607 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
775 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* *** * * *
18601672 CC-AGGGATCGGTCGGGTCCCCCTCTACCTGCTGCCGATCCTGCTACTGCAACCCTAGGTCT
840 CCGA-GGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCT
* * * *
18601733 GGTCCATTCTTAGGCTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
1 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G
** * * **
18601798 TGGGCGGGCGGGCACTAAGCCGGCTC-GAGAGACGGCATGCGCAAGTTGTGGATCGATAGGGTGG
64 ACGGCGGGCGGGCACTACGCCGGC-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
18601862 TAGGTGGGTTTAGGCACATCTTCTTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
128 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
18601927 ATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTTA
193 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
18601992 CGCTTATT-GAAACCTTTTGCGGTTCGGGATTTTCTAAAATTTTTTCGGAAGGAATTTTGGCCCC
258 CGATT-TTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * *
18602056 AAACTTGGAAGACGTGATCGTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCG
322 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
18602121 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTATTTCGGACACTTTACTGGCTAC
387 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTAC
* * * * *
18602186 TGGCGGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTATGATAAG
451 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
18602251 TGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCTCCC
516 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * ** * * * *
18602316 AGCCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGCTTCTCCGACGATGCTCCGACGATGG
581 GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGG
* ** * * * *
18602381 TGCACCGGTGAAGAAAAATACGGCACCAGAACATGCCCGAGCCCAGCATATGCTGCCGTAACCCT
646 TGCCCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * *
18602446 CAGTGCT-ATCTGATCTTAGACTGGGAATGAACTCTGTATGC-TATGACTGGGAATGAACTCCAT
710 CGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA-GACTGGGAATGAACTCCGT
* * * * * *
18602509 ATGCCTAAGTCAACCCACGAAACGAGCATGCAGGTGCTCAACCGGCCAGAGGGGTGGGATGCACA
773 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * *** * *
18602574 AGCC-AAGATTGGT-AGGTCCCCCTCTGTGTGCTGCCGATCCTACTACTTTAATCCTCAGT-T
838 AGCCGAGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCT
* * * **
18602634 CAGTCTGATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGCCAACCGACGAAATAAGCGGGCG-
1 -GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA
* * * *
18602698 -GGCGGGCGAGCACTACGCC-GCAAAGACAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
65 CGGCGGGCGGGCACTACGCCGGC-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * ** *
18602761 AGGTGGGTTTAGGTACATCTTCATATTTCTACATGCTAACACCATTTTTATGGCTTTTAAATTCA
129 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
18602826 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
194 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
18602891 GATTTTTGAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTTCGAAACGAGTTTTGGCCCCAA
259 GATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
18602956 ACATGGTAGACGTGATCCCTGTATTTTTGTTGCCATGCACAAAAAAATTCAGCCAAAAACTCGAA
324 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18603021 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
18603086 CAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGGGTGAGTTCTTGAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
18603151 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAC
519 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * *
18603216 CCCCCCGATCGCCGGAACCCCAATGCTGCCGATCAGGTTCTCCGACGA----T--GC--TGGTGC
584 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGC
* * * *
18603273 CCCGACGAAGAAAAATACGGCACCGGCACATGCCCGAGGCCAGCATGTGCTGCCGCAA--CAC--
649 CCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
*
18603334 TC-AGT-C---C----A----G--T---C-CC--AT-CTTAGA-TAGGGAATGAACTCCGTATGC
713 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGC
* * * * * * *
18603376 CTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAGTCGGCCAGAGAGGTGGGATGCACAAGCT
777 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * *
18603441 GAGGATCGATCGGGTCCCCCTCTGCGTGCTG-CTGATCCTATTGCTGCAACCCTCGGTCCT
842 GAGGATCGATCGGGTCCCCCTCTGTGTGCTGTC-GATCCTGCTACCGCAACCCTCGGT-CT
* * *
18603501 -GTCTGATCTTGGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAACGAGC--G-GA-
1 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAC
* *
18603561 --CGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
66 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
18603624 GTGGGTTTAGGAACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
18603689 CAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCACGA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * ** * * *
18603754 TTTTTGAAACTATTTGCGGTTCATGATTTTTTAAAATTTTTTCGAAAGGTGTTTTAGCCCCAAAC
261 TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* *
18603819 TTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
326 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
18603884 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
391 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
18603949 GCAAACCTGTAAAATCTCAAATGATCTTTCAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
456 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
18604014 GGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTTCGCACACCCCCCCGGCC
521 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
* * * *
18604079 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACTATGC-TCTGGCGATGGTGC
585 CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTC-GGCGATGGTGC
* *
18604143 CCCGACGAAGAAAAATGCGGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
649 CCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
18604208 TCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATAAACTCCGTATGCC
713 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * *
18604273 TAAGTCAACCCATGAAACGGGCGTGCGGGCACTCAACC-GCCTTGAGGGGCGGAATGCGAAAGTC
778 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC-AGAGGGGCGGGATGCGCAAGCC
* *
18604337 AAGGATCGATCGGGTGCCCCTCTGTGTGCTG-CTGATCCTGCTACCGCAACCCTCGGTCT
842 GAGGATCGATCGGGTCCCCCTCTGTGTGCTGTC-GATCCTGCTACCGCAACCCTCGGTCT
* * * *
18604396 GAT-TCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGG
1 GGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-G
* * * * **
18604460 GCGAACGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAATGTGG
64 ACG-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
18604525 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
128 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
18604590 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
193 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
18604655 CGATTTTTGAAACTTTCTGTGGTTCGGGATTTTTGAAAATTATTTT-GGAAGGAGTTTTGGCCAC
258 CGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCC
* * *
18604719 AACCTTGGTTGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
322 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
18604784 AAGTGTACAATATTTTGTGACCATTTGAGAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACT
387 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
18604849 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
452 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
18604914 GATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACA-ACCCCCCC
517 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
* * * * * *
18604978 GGCCCCCCCGATCGCCGAAATCCCAATGCCGTCGGTCAGGTTCTCCGACAATGCTTTGGTGATGG
581 GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGG
*
18605043 TGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
646 TGCCCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
18605108 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTAGGAATGAACTCCGTAT
710 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
18605173 GCCTAAGTCAACCCACGAAACTAGCGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGTGCAAG
775 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * *
18605238 CCGAGGATCGGTCGGGTCCCCCTCTGCT-TGCTGCCGATCTTGCTGCCGCAACCCTCGGTCC
840 CCGAGGATCGATCGGGTCCCCCTCTG-TGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCT
* * *
18605299 GGTCTAGTCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAG
1 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA-
* * *
18605364 CGGGCGCGCGTGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGT
65 C-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
** *
18605429 AGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGGTTGTAAATTCA
129 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
18605494 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCAT
194 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
18605559 GATTTTCAAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAA
259 GATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
** * * * * *
18605624 ACTTTTTAGACATGATCCTTGTATTTTTTTTTTGCATCCATAAAAAAATTCAGCTAAAAACTCGA
324 ACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
18605689 TGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGGCCCCATTTCAGACACTTTAATGGCTACTG
388 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
18605754 GCAACAAACCTGTAAAATATCAAGTGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGG
453 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
18605819 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCACACATCATGTGCACA-ACCCCCCCG
518 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG
* *
18605883 GCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC-TCTGGCGATGG
582 GCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTC-GGCGATGG
* *
18605947 TGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCGCAACCCT
646 TGCCCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* *
18606012 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTAT
710 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
18606077 GCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAACCGGCCAGAGGGGTGGGATGTGCAAG
775 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
*** * * * * *
18606142 CCG-GAGATCGATCGGGTCCCCCTCTACATGCTGCCGATCTTG-TGGCTGCAACCCTCGGTCC
840 CCGAG-GATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCT-ACCGCAACCCTCGGTCT
* * *
18606203 GGTCTAGTCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGG
1 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GA
* * ** *
18606268 CGGGCGCGCGTGCACTACGCCGGCCAGAGAGACAAGATGCGCAAGTCGTGGATCGATAGGGTGGT
65 C-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
18606333 AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
129 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
18606398 TACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
194 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
18606463 GATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
259 GATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* ** *
18606528 ACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGCATTCAGCTAAAAACTCAAA
324 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18606593 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACATTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* ** *
18606657 CAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGATGTGTGAGTTCTTGAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
**
18606722 TAGGGGGCCAATATAAGGGTTAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
519 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * ** **
18606787 CCCCCCAATCTCCGGAACCCCAATGCCCCCTTTCAGGTTCT-C--C-A-------GCGATGGTGC
584 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGC
* * *
18606841 CCCAACGAAGAAAAATGCGGCACAAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGG
649 CCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--
*
18606906 TCTGGTCCAATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCT
709 TC-GG--------T---CT-G----G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCT
* * *
18606971 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGCCG
752 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * * ** * *
18607036 GCTAGAGGGGCGGGATGCGTAAGACGGGGATCGGTCGGGTCCTCCTCCGCAT-CTGTTGATCCTA
817 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTG
* * * *
18607100 CTGCCACAACCCTTGGTCC
882 CTACCGCAACCCTCGGTCT
* * * * *
18607119 GATCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGGA
1 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GA
* ** * * * * *
18607184 CAGGCGCGTAGGCACTACTCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATTGATAGGGTTGC
65 C-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* **
18607249 AGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
129 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
18607314 TACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
194 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
18607379 GATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGCCCCAA
259 GATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* ** *
18607444 ACTTGGTAGATGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTTGGCTTAAAACTCGAA
324 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
18607508 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACCTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* **
18607572 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGTGAGTTCTCGAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
**
18607637 TAGGGGGCCAATATAAGGGTGAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
519 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
* * * *
18607702 -CACCCCGATCGTCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGT
583 CCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTTCGGCGATGGT
* *
18607765 GCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTT
647 GCCCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
** * * * *
18607830 GGTCTAATCCGATCATAGACTGGGTATGAACTCCGTATGCTTAGACTGGGAACGAACTTCGTATG
711 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * *
18607895 CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGCGGGAGGCGCAAGC
776 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * *
18607960 CGGGGATCGGTCGGGTCCCCCTCTGTGTGCTATTGATCCTGCTACCGTAACCCTCGATTT
841 CGAGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCT
* * * * * * *
18608020 GATCTGATCTGAGATTGGGAATGAACTCCATATGTCTAAGCCAACCGACGAAACGAGCAGGCG--
1 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAC
*** * * * * * *
18608083 GGCGGGCGGGTTTTTCGCCGTCTAGAGAGACGGGATGCGTAGGCCGTGGATTGATAGGGTGGTTA
66 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG-TA
* *
18608148 -GTGGGTTTAGGCACATGTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
18608212 ACAAT-G----TT---CC-T----T-AAG------GGCAAGACGACTCGTTTTCTATTTTTCACG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
18608257 ATTTTCCAAAC-TTTTACGGTTCGGGATTTTTTAAATTTTTTTCGGAAGGAAGTTTTGGCCCCAA
260 ATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAA
* **
18608321 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAGGTCAGCTAAAAACTCGAA
324 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
18608386 GTGTACAAGATTTTGTGGCCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * ** * *
18608451 CAACAAACCTATAAAATCTCAAATGCTCTTTATGGAAGTGCGAGTTCACGAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
18608516 TAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCATATAATGTACGCACACCCCCCGGC
519 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
** * * * *
18608581 CCCCCCGATCGCCAAAACCCCAATGCCGTCAGTCAGGTTCTCCGGCAATGC-TCTG-GATGGTGT
584 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGC
* ** * * * *
18608644 CTCGGGGTAGAAAAATGCAGCGCCAGCACATGCCCGAGCCCAGCATGTGCTACGGCAACCCTCGG
649 CCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * * *
18608709 TCCT-ATCCAATCTTAGAATGGGAAAGAACTCCGTATCCTTAGACTGGGAATGAACTCCGTATAC
713 T-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
18608773 CTAAGTCAACCCACGGAACGATCGTACAGGCGCTCAACCGACCAGAGGGGCGGGATGTGCAAGCC
777 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * * ** **
18608838 GGGGATCGGCCGGGGTCCTCCTCTGTGTGCTATCGATCCTGCTGCCATAAAACT-GGAT-T
842 GAGGATCGATC-GGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGG-TCT
* * **
18608897 CGGTCTGATCTGAGACT-GGAATGAA--CCGTATATCTAAGCCAACCGACGAAACGAGCGGGCGA
1 -GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA
** * * * * * *
18608959 --GCGGGCGGGCACTACATCGACCAGAGAGACAGGATGCGTAGGCCGTGGATTGATAGGGTGGTT
65 CGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
18609022 GGTGGGTTTAGGCACATTTTTATATTTCTGCATGCCAATGCCATTCTTATGGCTTGTAAATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
18609087 ACAATGTTCCCTTAAGCCTTCACATGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
18609152 ATTTTCCAAAC-TTTTACGGTTCAGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCCCCCAA
260 ATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCCAA
* * * *
18609216 A-TTTGTAAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACTGGA
324 ACTTGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
18609280 AGTGTACAAGATTTTGTGGCCATTTGAAAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTAC
388 AGTGTACAAGATTTTGTGACCATTTG--AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
18609345 TGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
451 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
18609410 AGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCC
516 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *** *
18609475 -GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATAATGCTCCGGCGATGG
581 GGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGG
* *
18609539 TGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGCAACCCT
646 TGCCCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-
*
18609604 CAGTCTGATCCGATCTTAGACTGTGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTAT
708 C--TC-G----G----T---CTG-G--T---C--C-GAT-CTTAGACTGGGAATGAACTCCGTAT
* * * * *
18609669 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACGCACAAAACGAGAGTGCGGGTGCTCAG
749 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
18609734 CCGGCCAGAGGGGCGGGATGCGTAA-CCCAGAGATTGATCGGGT-CCCCTCTATGTGCTGCCAAT
814 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGATCGGGTCCCCCTCTGTGTGCTGTCGAT
18609797 CCTGCTACCGCAACCCTCGGTCT
878 CCTGCTACCGCAACCCTCGGTCT
* * * * * * *
18609820 GGTCCAATTTTAGACTGGGTATGAACTCTGTATGCCTAAGCCAACCAACGAAAC-A---AG-TA-
1 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAC
* * *
18609879 GGCGGGCGGGCACTACGCCGACCAGAGAGATGGGATACGCAAGCCGTGGATCGATAGGGTGGTAG
66 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* ** * *
18609944 GTGGATTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATTGCATGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
18610009 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * *
18610074 TTTTCCAAACATTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
261 TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
*
18610139 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGT
326 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
18610204 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
391 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
18610269 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
456 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
18610334 GGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCAGACCCCCCGGCCC
521 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * * ** *
18610399 CCCCGATCGCTGGAACCCCAATACCGTCGATCAGGTTCTCCGGTGATGCTTCGATGATGGTGCGC
586 CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGCCC
* * ** *
18610464 CGGCGAAGAAAAATGCGCCACCAGCACATGCTCGAGCCCAGCATGTGCTGTTGCAACTCTCGGTC
651 CGACGAAGAAAAATGCG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
18610529 TGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGATCTCTGTATGCCTA
715 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
18610594 AGTCAACGCATGAAACGAACGTGCGGGCCCTCAGCCGGCCAGAAGGGCGGGATGCGTAAGCCGAG
780 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAG
* * * * * * * *
18610659 GATTGACCGGGTCCCCCTCAGTGTGCTGTCGATCCTACTACAGCAACCCTTGATTT
845 GATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCT
* * * *
18610715 GGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACCAGTGGGCGGA
1 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GA
* * *
18610780 CGGACGGGCGGGCACTACGTCGGCCTGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
65 CGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
18610845 ACGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
129 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
18610910 TACAATGGTCCCTTACGCCTTCACGTCAAGTTTTAATGGCAAGATGACTCGTTTTCTATTTTTCA
194 TACAATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * *
18610975 TGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGTCCCA
258 CGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
*
18611040 AACTTGGTAGACGTGATCCTTGTAGTTTTT-TTGGCATGCACAAAAATATTCAGCTAAAAACTCG
323 AACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * *
18611104 AACTGTACAGGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACCCTTTAATGGCTACT
387 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * * *
18611169 GGCAGCAAACCTATAAAATCTCAAATGCTC-TTAAGGGGGTGTGAGTTCTCAAGATTTAATGTGG
452 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
18611233 GATA-GGGG-CAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTTCACACACCCCCCG
517 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * * *
18611296 G--CCCTCGATCGCCGAAACCCCAATGCCGTCGGTCAAGTTCTCGGGCGATGCTCCGGTGATGGT
582 GCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGT
* * ** * * * *
18611359 GCCCCAATGAAGAAAAATGAACTACCAGCACATGCCAGAGCCCAGCATGTGCAGCTGTAACCCTC
647 GCCCCGACGAAGAAAAATGCGC-ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
18611424 GGTCAGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATG
711 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
18611488 CCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTCAGCCGGCTAGTGGGGAGGGATACACAAGC
776 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * ** ** * * * ** *
18611553 TG-GGAAT-TAGCTAGGTCCCCCTCTGCATGCTACCGATCCAGCTGCTGCAACCCTCCATCC
841 CGAGG-ATCGATC-GGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCT
* * * * * *
18611613 AGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAATGAG-TGG-G-C
1 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAC
* * *
18611675 --C-GGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCATAGATC-ATAGGGTGGTAG
66 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
18611736 GTGGCTTTAGG
131 GTGGGTTTAGG
18611747 AAGGATTTTT
Statistics
Matches: 8806, Mismatches: 991, Indels: 448
0.86 0.10 0.04
Matches are distributed among these distances:
861 468 0.05
862 56 0.01
863 78 0.01
864 11 0.00
865 89 0.01
866 1 0.00
867 2 0.00
868 2 0.00
870 60 0.01
872 3 0.00
874 3 0.00
875 154 0.02
876 36 0.00
877 272 0.03
878 126 0.01
879 182 0.02
880 4 0.00
883 6 0.00
884 4 0.00
885 1 0.00
887 3 0.00
888 2 0.00
889 83 0.01
890 42 0.00
891 64 0.01
892 5 0.00
893 2 0.00
894 130 0.01
895 264 0.03
896 221 0.03
897 459 0.05
898 561 0.06
899 126 0.01
900 131 0.01
901 133 0.02
902 287 0.03
903 1210 0.14
904 1923 0.22
905 12 0.00
907 3 0.00
908 1 0.00
910 2 0.00
911 2 0.00
912 1 0.00
913 3 0.00
914 1 0.00
915 246 0.03
916 355 0.04
917 128 0.01
918 3 0.00
919 161 0.02
920 111 0.01
921 272 0.03
922 88 0.01
923 19 0.00
924 105 0.01
925 25 0.00
926 64 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAC
GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGCCC
CGACGAAGAAAAATGCGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGG
ATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCT
Found at i:18611478 original size:26 final size:25
Alignment explanation
Indices: 18611437--18611488 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
18611427 CAGGTCCAAT
18611437 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
18611462 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
18611488 C
1 C
18611489 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:18611764 original size:14 final size:14
Alignment explanation
Indices: 18611745--18611773 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
18611735 GGTGGCTTTA
18611745 GGAAGGATTTTTTT
1 GGAAGGATTTTTTT
18611759 GGAAGGATTTTTTT
1 GGAAGGATTTTTTT
18611773 G
1 G
18611774 CCCAAACTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (14 bp):
GGAAGGATTTTTTT
Found at i:18613052 original size:26 final size:26
Alignment explanation
Indices: 18613000--18613052 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18612990 CCTATCCGTT
*
18613000 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
*
18613026 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
18613052 C
1 C
18613053 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:18614803 original size:26 final size:26
Alignment explanation
Indices: 18614774--18614823 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
18614764 GTCCGATCTG
18614774 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
18614800 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
18614824 CTAAGTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:18617831 original size:896 final size:872
Alignment explanation
Indices: 18612233--18617871 Score: 5087
Period size: 857 Copynumber: 6.4 Consensus size: 872
18612223 AACGAGCGTG
* * * * ** * * * *
18612233 CGGGTGCCCCTCTGTATGCTGCCGATCCTGCTGTCGCAACCCTC-GTCTG--GTCCAATCATAGA
1 CGGGTACCCCTCTGCATGCTGTCGATCCTACTACCACAACCCTCAGTCTGATATCCGATCTTAGA
* * * *
18612295 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGC-G-GGC--AG-GCACTA
66 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGTGGCGGCGAGCACTG
* * * * *
18612355 CGTCGGCCAGAGAGACGGGATGCGCAAGCCATGAATCGATAGGGTGGTAGGTGGGTTTAGGAACA
131 CGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * * *
18612420 TCTTCATATTTCGACGTGCCAATGCCTTTTTTATGGCTTGTAAACTCATACAATGTTCCCTTAAG
196 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
18612485 CCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTTCT-AAAATTTT
261 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTT-TGAAACTTTT
* * * * * * **
18612549 TACGGTTCGGGATGTTTTAAAATTTTTTCGGATGGTGTTTTGGCCCCAAACTTGGCAGACGTGAT
325 TGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGTC-GACAAGAT
* * * * * * *
18612614 CCTTGTATTTTTCTTGGCATGCACATAAAAATTCAGCTAAAAACTCGAAGAGTACAAGAGTTTGT
389 CCTTGTATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAACCCAAAGTGTACAAGATTTTGT
18612679 GACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
454 GACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * * * * *
18612744 TCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTAGAGGTTTGATGAGGGACAGGGGGCCAATATAA
519 TCTCGAACGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGAGGCCAATATAA
* * * * ** * *
18612809 GGGCCAAGTACCAACACCCATCGTACAACATGTGTGCACACCCCCC-TGGCCACCTCGATCGCCG
583 GGGCAAAGT--CAGCACCCATCGCACATCATGTGCACACACCCCCCACGGCC-CCTCGATCGTCG
* * * * * *
18612873 GAACCCCAATGTCGCCGGTCAGGTTCTTC-GGCGATGCTCCGACGATGGTGCCCCAGTGAAGAAA
645 GAACCCCAATGCCGCCGGTCAGGTTC-TCAGACGACGCTCCGATGATGGTGCCCCAGCGAAGAGA
* * * * * * *
18612937 AATGCGGCACCAGCACATGCTCGAGCCCAGCATGGGTTGCTGCAACCCTTAATCCTATCCGTTCT
709 AATACGGCACCAGCACATGCCCAAGCCCAGGA--AG-TGCTG----TCGTAA--C---CC--TC-
* * * *
18613002 TAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC
759 -AGTCT--G---G---TCCG-AT-CTTAGACTGGTAATCAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * * * * * *
18613067 GAAACAAGCGTGCGGGTGCTCA-ACTAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
813 GAAATAAGTGCGAGGGCGCTTAGCCGA-CCAGA-GGGCGAGATGCGAAAGCCGGGGATCGAT
* * * * * * *
18613128 TGGGT-CCTTCTCTGCATGCTGGCGATCCTGCTGCCACAACCCT-AGGTCTG--GTCTGATCTTA
1 CGGGTACC-CCTCTGCATGCTGTCGATCCTACTACCACAACCCTCA-GTCTGATATCCGATCTTA
* * * * *
18613189 GACTGGGAATGAACTCCGTATGCCTCAGCCAATCGATGAAATGAGCCGGTGGGCGGGCGGGCCGG
64 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-C---GGGC-GG-TGG-CGG
* ** * * *
18613254 CGGGCACAACGCCGGCCAGAGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
122 CGAGCACTGCGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
18613319 TTAGGCACATCTTCACATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
187 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* ** *
18613384 TCCCTTAAGCCTTCACGTCAAGTTTCATGTTAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
252 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTG
* * ** *
18613449 AAACTTTTTACGGTTCAAGATTTTTTTTTAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
317 AAACTTTTTGCGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT-GT
* ** * * * *
18613514 AGACGGGATCCTTGTATTTTTTTTGGCATGCACCAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
380 CGACAAGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATGCAGCTAAAAACCCAAAGTGTAC
* *
18613579 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAA
444 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
* ** * * *
18613644 AGCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
509 ACCTGTAAAATCTCGAACGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGAG
* * **
18613709 GCCAATATAAGGGCCAAGTAGCAGCACCCATCCCACATCATGTGTGCACACCCCCC-CGGCCGCC
573 GCCAATATAAGGGCAAAGT--CAGCACCCATCGCACATCATGTGCACACACCCCCCACGGCC-CC
* * * * ** * * * * *
18613773 CCGATCG-CCGAACCCCAATGTCGTCGGTCAGGTTCTTTGGCGATGCTTCGACGATGGTG-CCCT
635 TCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCAGACGACGCTCCGATGATGGTGCCCCA
* ** * * * * * * * *
18613836 GACGAAGAAAAATGTGGCACCAGCACATGCCCGATCCCAGCATGTGCTGTCGCAACCTTCGGTCC
700 G-CGAAGAGAAATACGGCACCAGCACATGCCCAAGCCCAGGAAGTGCTGTCGTAACCCTCAGTCT
* * * * * ** * *
18613901 GGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAGCCCA-TTAA-ACGAGCGTACG
764 GGTCCGATCTTAGACTGGTAATCAACTCCGTATGCCTAAGTCAACCCACGAAATAAGTGCG-A-G
* * * * * * * *
18613964 GGTGCTCAGTCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGAC
827 GGCGCTTAGCCGACCAGA-GGGCGAGATGCGAAAGCCGGGGATCGAT
* * * *
18614011 CTGGT--CCC-C--C-T-C--T-G--CCTGCTACCGCAACCCTCAGTCTG--ATCTGATCTTAGA
1 CGGGTACCCCTCTGCATGCTGTCGATCCTACTACCACAACCCTCAGTCTGATATCCGATCTTAGA
* * * * *
18614062 GTAGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC-G-GGCGGGCGGGCACT
66 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGTGGC-GGCGAGCACT
* * * * * * * * * *
18614125 ACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGAGTGGTAGCTAGGTTTTGGTAT
130 GCGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * * ** *
18614190 ATCTTCATATTTTTGCATGCCAATGCCATTTTTATGCCTTCTAAATTCATACAATATTCCCCTAA
195 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * **
18614255 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCTTGATTTTTGAAACTTTT
260 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTT
* * * * **
18614320 TGAGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGAT
325 TGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT-GTCGACAAGAT
* * * * **
18614385 CCTTGTATTTTTATTGGCACGCATAAAAAAATTCAGCTAAAAACTTAAAGTGTACAAGATTTTGT
389 CCTTGTATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAACCCAAAGTGTACAAGATTTTGT
* *
18614450 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAA
454 GACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
18614515 TCTCAAATGCTC-TTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG-GGCCAATATA
519 TCTCGAACGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATAAGGGAT-AGGAGGCCAATATA
* * * ** *
18614578 AGGGCCAAGTACCAGTACCCATTGCACATCATGTGCGTACACCCCCTC-CGGGCCCCTCGATAGT
582 AGGGCAAAGT--CAGCACCCATCGCACATCATGTGCACACACCCCC-CAC-GGCCCCTCGATCGT
* * * * * * *
18614642 CGGAACCCCAATGCCTG-TGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCAC-GATGAAG
643 CGGAACCCCAATGCC-GCCGGTCAGGTTCTCAGACGACGCTCCGATGATGGTGCCCCAG-CGAAG
* ** * * * * ** * *
18614705 AAAAATGTGACACCAGCACATGCCCGAGCCCAGTATGTGCTACCGTAACCCTCGGTCCGGTCCGA
706 AGAAATACGGCACCAGCACATGCCCAAGCCCAGGAAGTGCTGTCGTAACCCTCAGTCTGGTCCGA
* * * * *
18614770 TCTGAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAAAA
771 TCTTAGACTGGTAATCAACTCCGTATGCCTA-A----G--TCAAC-CC--A---C---G----AA
* * * * * *
18614835 CATAAAACGAGCGTGCGGCCGCTCAGCCGACTAGAGGGGCGAGATGCGCAAGCCGGGGATCGGT
816 -AT--AA-GTGCGAG-GG-CGCTTAGCCGACCAGA-GGGCGAGATGCGAAAGCCGGGGATCGAT
* ** ** * * * * * * *
18614899 CGGGTCCCCCTCTGTGTGCTACCAATCTTGCT-CCTGCAACCCTCGGTC-CAGT-T-CAATCTTA
1 CGGGTACCCCTCTGCATGCTGTCGATCCTACTACC-ACAACCCTCAGTCTGA-TATCCGATCTTA
* * * * * * *
18614960 GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGACGGACGGGTTGGCGGG
64 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG--TGG-CGGCGAG
* *
18615025 CACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
126 CACTGCGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
18615090 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAATTTCATACAATGGTCCT
191 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
18615155 TTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAAC
256 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAAC
* * * *
18615220 TTTTTGCGGTTCGGGATGTTTTAAAATTCTTTT-GGAAGGATTTTTGGCCCCAAACTTGGTAGAC
321 TTTTTGCGGTTCGAGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTT-GTCGAC
* * * * * *
18615284 ATGATCCTTGTATTTTTGTTGGAATGCATAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGAT
384 AAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAACCCAAAGTGTACAAGAT
* * *
18615349 TTTATGACCATTTGAAAAAAGTGTCCCAATTTCGAACACTTTAATGGCTACTGGCAGCAAACCTG
449 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
18615414 TAAAATCT-GAAATGCTCTTTAAGGGGGTGTGAGTT-TCAAGGTTTGATGAGGGATATGG-GGCC
514 TAAAATCTCG-AACGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATAAGGGATA-GGAGGCC
* **
18615476 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCA-GGCCCCTCGA
576 AATATAAGGGCAAAGT--CAGCACCCATCGCACATCATGTGCACACACCCCCCACGGCCCCTCGA
* * * * *
18615540 TTGCCGGAACCCTAATGCCGCCGGTTAGGTTCTC---TG--G---C---GATGGTGCCCC-GACG
639 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCAGACGACGCTCCGATGATGGTGCCCCAG-CG
* * ** * * ** *
18615593 AAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCACAACCCTCGGTCTGGTC
703 AAGAGAAATACGGCACCAGCACATGCCCAAGCCCAGGAAGTGCTGTCGTAACCCTCAGTCTGGTC
* * * * * *
18615658 TGATCTTAGACTGCG-AATGAACTCCGTATGCCTAAGTCAACCCATG-AA-ACGAGCGTACGGGT
768 CGATCTTAGACTG-GTAATCAACTCCGTATGCCTAAGTCAACCCACGAAATAAGTGCG-A-GGGC
* * * *
18615720 GCTCAGCCGGCCAGAAGGGC-AGGATGCGCAAGCCGGGGATCGAC
830 GCTTAGCCGACCAG-AGGGCGA-GATGCGAAAGCCGGGGATCGAT
* * ** * * * *
18615764 CAGGT-CCCCTTCT-CTGTGCTACCGATCCTGCTACCGCAACCCTCGGTCCG--ATCCGATCTTA
1 CGGGTACCCC-TCTGC-ATGCTGTCGATCCTACTACCACAACCCTCAGTCTGATATCCGATCTTA
* * *
18615825 GACTGTGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGC---GGC--CAAGCAC
64 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGTGGCGGCGAGCAC
18615885 TGCGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
129 TGCGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * *
18615950 CATCTTCATATTTCTTCATGCCAATGCAATTTTTATGGCTTGTAAATTAATACAATGGTCCTTTA
194 CATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
18616015 AGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTATATTTTTCACGATTTTTGAAACTTT
259 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTT
**
18616080 TTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGTTTTTTGGCCCCAAACTTGGTCGACAAGA
324 TTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT-GTCGACAAGA
**
18616145 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACCCAAAGTGTACAAGATTTTG
388 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAACCCAAAGTGTACAAGATTTTG
*
18616210 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAA
453 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* ** *
18616275 ATCTCGAACGCTCTTTAAGGGGTGTGAGTTCTTGCTGTTTGATAAGGGATAGGGGGCCAATATAA
518 ATCTCGAACGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGAGGCCAATATAA
18616340 GGGCAAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCACGGCCCCTCGATCGTCGG
583 GGGCAAAGT--CAGCACCCATCGCACATCATGTGCACACACCCCCCACGGCCCCTCGATCGTCGG
* * ** * *
18616405 AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCAGCGATGAGAAA
646 AACCCCAATGCCGCCGGTCAGGTTCTCAGACGACGCTCCGATGATGGTGCCCCAGCGAAGAGAAA
* * * *
18616470 TGCGGCACCAGCACATGCCCAAGCCCAGTAAGTGTTGTCGTAACCCTCGGTCTGGTCCGATCTTA
711 TACGGCACCAGCACATGCCCAAGCCCAGGAAGTGCTGTCGTAACCCTCAGTCTGGTCCGATCTTA
* * * *
18616535 GACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGGGCGCTTAGCCGAC
776 GACTGGTAATCAACTCCGTATGCCTAAGTCAACCCACGAAATAAGTGCGAGGGCGCTTAGCCGAC
* * *
18616600 CAGTGGGGCGGGATGCGTAAGCCGGGGATCGAT
841 CAG-AGGGCGAGATGCGAAAGCCGGGGATCGAT
* * * *
18616633 CGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCATAACCCTCAGTCTGGT-T-CGATCTTAGA
1 CGGGTACCCCTCTGCATGCTGTCGATCCTACTACCACAACCCTCAGTCTGATATCCGATCTTAGA
* *
18616696 CTGGGAATGAACTCCGTATGGCTAAGCCAACCGACGAAATGAGCGGGCGGGTAGGCGGGCGAGCA
66 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGT-GGC-GGCGAGCA
* * * * *
18616761 CTGCACCGGCCAGAGAGACGAGATGTGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGC
128 CTGCGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
18616826 ACATCTTCATATTTCTACCTGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
193 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
18616891 AAGCCTTTACGTGAAGTTTCATGGCAAGACGATTCGTTTTTTATTTTTTACGATTTTTGAAACTT
258 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTT
* * * **
18616956 TTTGGGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-T-T-GACGTGA
323 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGTCGACAAGA
****
18617018 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAATTTGAAGTGTACAAGATTTTG
388 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAACCCAAAGTGTACAAGATTTTG
*
18617083 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
453 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
18617148 ATCTC-AAGTGCTC-TTAAGGGTGTGGTGAGTTCTCGAGGTCTTGATGATGGATAGGTAGGCCAA
518 ATCTCGAA-CGCTCTTTAAGGG-GT-GTGAGTTCTCGAGGT-TTGATAAGGGATAGG-AGGCC-A
* * *
18617211 ATATAAGGGC-CAGT-A-CA-CCATCGC-CATCAAATGTGCGCACACCCCCC-TGGCCCCTCGAT
577 ATATAAGGGCAAAGTCAGCACCCATCGCACATC--ATGTGCACACACCCCCCACGGCCCCTCGAT
18617270 CGTCGGAACCCCAATGCCGCCGGTCAGGTTTCTGCAGACGACGCTCCGACGACGCTCCGGAGTGG
640 CGTCGGAACCCCAATGCCGCCGGTCAGG-TTCT-CAGACGACGCT-C--CGA---T---GA-TGG
* * ** * * *
18617335 TG-CCTA-CGAAGA-AAATACGGCATCAGCACATGGCCTGAG-CTAGGACGTGCT-TCG-CA-CC
693 TGCCCCAGCGAAGAGAAATACGGCACCAGCACAT-GCCCAAGCCCAGGAAGTGCTGTCGTAACCC
* ** * * * * *
18617393 TTAG-CTGGTTTGATCTTGGAACTGG-AATCAACTTCATGT-TGCTTAGACTGGGATGAACTCGA
757 TCAGTCTGGTCCGATCTTAG-ACTGGTAATCAAC-TC-CGTATGCCTA-A----G-TCAAC-CCA
* * * *
18617455 TGCCTAAGTCAACCG-GACGAGCGGCCGCCTTCAGCCG-GCA-AGGGTGAGATGCGAAAGCCGGG
812 ---CGAAAT-AA--GTG-CGAG-GG-CG-CTT-AGCCGACCAGAGGGCGAGATGCGAAAGCCGGG
* *
18617517 GATTGGT
866 GATCGAT
* * *
18617524 CGGGTACCCCTCTGCGTGCTGTTGATCCTACTGCCACAACCCTTC-GTGC-GATCCAATCCGATC
1 CGGGTACCCCTCTGCATGCTGTCGATCCTACTACCACAACCC-TCAGT-CTGAT---ATCCGATC
*
18617587 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGAGTGGGCGGAC
61 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GT-GGCGG-C
* * * * *
18617652 GGGCACTACGTCGACCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
123 GAGCACTGCGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
18617717 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGT
188 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
18617782 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGA
253 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGA
* *
18617847 AACTTTTTACGGTTCAAGATTTTTT
318 AACTTTTTGCGGTTCGAGATTTTTT
18617872 CGGAAGGAGT
Statistics
Matches: 4074, Mismatches: 488, Indels: 363
0.83 0.10 0.07
Matches are distributed among these distances:
856 18 0.00
857 449 0.11
858 40 0.01
860 88 0.02
861 127 0.03
862 209 0.05
863 197 0.05
864 6 0.00
865 128 0.03
866 7 0.00
867 6 0.00
868 1 0.00
869 243 0.06
870 17 0.00
871 117 0.03
872 33 0.01
873 147 0.04
874 17 0.00
875 14 0.00
876 30 0.01
877 259 0.06
878 5 0.00
879 4 0.00
880 26 0.01
881 16 0.00
882 9 0.00
883 92 0.02
884 10 0.00
885 3 0.00
886 2 0.00
887 7 0.00
888 48 0.01
889 1 0.00
890 7 0.00
891 165 0.04
892 6 0.00
893 7 0.00
894 9 0.00
895 41 0.01
896 313 0.08
897 3 0.00
899 3 0.00
900 73 0.02
901 3 0.00
902 41 0.01
903 2 0.00
904 441 0.11
905 21 0.01
906 5 0.00
907 3 0.00
908 193 0.05
909 146 0.04
910 216 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
CGGGTACCCCTCTGCATGCTGTCGATCCTACTACCACAACCCTCAGTCTGATATCCGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGTGGCGGCGAGCACTG
CGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTT
GCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGTCGACAAGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAATGCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCGAACGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGAGGCCAATATAAGGG
CAAAGTCAGCACCCATCGCACATCATGTGCACACACCCCCCACGGCCCCTCGATCGTCGGAACCC
CAATGCCGCCGGTCAGGTTCTCAGACGACGCTCCGATGATGGTGCCCCAGCGAAGAGAAATACGG
CACCAGCACATGCCCAAGCCCAGGAAGTGCTGTCGTAACCCTCAGTCTGGTCCGATCTTAGACTG
GTAATCAACTCCGTATGCCTAAGTCAACCCACGAAATAAGTGCGAGGGCGCTTAGCCGACCAGAG
GGCGAGATGCGAAAGCCGGGGATCGAT
Found at i:18619341 original size:26 final size:26
Alignment explanation
Indices: 18619305--18619357 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18619295 CCGGTCCGAT
* * *
18619305 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18619331 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
18619357 C
1 C
18619358 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18621653 original size:26 final size:26
Alignment explanation
Indices: 18621603--18621655 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18621593 CTAATCTGAT
* **
18621603 CTTAGACTGGGAAAGAACTTTGTATG
1 CTTAGACAGGGAAAGAACTCCGTATG
*
18621629 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAAAGAACTCCGTATG
18621655 C
1 C
18621656 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAAAGAACTCCGTATG
Found at i:18622364 original size:26 final size:26
Alignment explanation
Indices: 18622335--18622387 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18622325 CTGATCCGAT
18622335 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
18622361 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18622387 C
1 C
18622388 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.