Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167918.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_182, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56680
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:1808 original size:26 final size:26
Alignment explanation
Indices: 1772--1824 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1762 GTTGACTTAG
1772 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1798 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1824 G
1 G
1825 ATTGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2704 original size:894 final size:892
Alignment explanation
Indices: 1--4299 Score: 5700
Period size: 894 Copynumber: 4.8 Consensus size: 892
* * * *
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCATGGGTTACA
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCG
* * * * *
66 GCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCACAATTTTCTTCGCCGGGGCACCATCGTCG
66 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCG
* * * *
131 GAGCATCACCAGAGAACCTGACCGGCAGCATTGGGG-TT-CCGATC-GGGGGCCGGGGGGTGTGC
131 GAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTTGACGATCGGGGGGCCGGGGGGTGTGC
* * *
193 GCACATGATGTGCGGTGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACC
196 GCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
258 TCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCA
261 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
323 AGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATAT-GAGTTTTTAG
326 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAG
* * * *
387 CTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACATCAACCAAGTTTGGGGCCGAAAC
390 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
*
452 TCCTTCCAAAAAAATTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGGTGGTGAAAAAA
455 TCCTTCCAAAAAAATTTTAAAAAATCCCGAA-CATAAAAAGTTTCAAAAATC----GTG-AAAAA
* * * * *
517 TGCGAATAATGAGTGTGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAAT
514 T--AAAAAACGAGT-CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-
*
582 TTTACAAGCGCATAAAAATGGCATTGGC--AC------AT--AGATGTACCTAAACCCAACCTAC
575 TTTACAAGC-CATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCC-ACCTAC
* *
637 CACACTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCGCGGCATAGTGCCCACCCGCCCGC
638 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGC-CGGCATAGTGCCCACCCGCCCG-
* * * *
702 CTCGTTTTCGTCGGTTGGCTTAGGCATATGGAG-TCATTCCCAGAGTAAGATCGGACCGGACCGA
701 CTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGACCAGACCAA
* * * *
766 -AGTTATGGCTGCAAGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCTGGCTTGAGCATCC
765 GAGTTACGGCTGCAAGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGAGCATCC
* * * *
830 CGCCCGTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGT
830 CGCCCCTCTGGCCGACAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
893 TCATTCCCAGTCTAAGCATATGGACTTCATTCCCAGTCTAACATCGGACCAGACCAAGGGTTGCG
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCG
* * * *
958 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCG
66 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCG
* * * * * *
1023 GAGCATCGTCGGAGAACCTGACCGGCGGCATTGAGGTTCTGGCGATCGAGGGGCCGGGGGGGTGT
131 GAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTT-TGACGATCGGGGGGCC-GGGGGGTGT
* **
1088 ACGCACATGATGT-ACGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCATCAA
194 GCGCACATGATGTGA-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * * *
1152 AGCTCGAGAACTCACA-CCCTTTAAAGAGCTTTTTAGATTTTACAGGTTTGCTGCCAGTAACCAT
258 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
1216 TAAAGTATTTGAAATGGGGACAC-TTTTTCAAA-GGTCACAAAATCTTGTACACTTCGAGGTTTT
323 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
1279 AGCTGAATTTTTTTGTGCATGCCAA-AACAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
388 AGCTGAATTTTTTTGTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
1343 AAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTCAAAAATCATG-AAAATA
452 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC-ATAAAAAGTTTCAAAAATCGTGAAAAATA
* *
1407 AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTCAATTTACA
516 AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
1472 AGCCATAAAAATGGCATTGGCACACAGAAACATGAAGATGTGCCTAAACCCACCTACCACCTTAT
581 AGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * * **
1537 CGATCCACGACTTGCG-ATCCCATCTCTCTGGCCGG-AGTAATGCCCGCCCGTCTACTCG-TTCT
646 CGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCA-TAGTGCCCACCCGCCCGCTCGTTTC-
* * * * *
1599 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA-ATCTAAGATTGGACCAGACTAAGGGTTGC-
709 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGA-CTAAGATCGGACCAGACCAAGAGTTACG
* * * * *
1662 GATAGTAGGATCAGCAGCACGCAGAAGGGGACCC-AGTCGATCCCCGACTTGAGCATCCCGCCCC
773 GCT-GCAAGATCAGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGAGCATCCCGCCCC
* *
1726 TCTGGCCGACTGAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGT
836 TCTGGCCGACAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
1783 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACG
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCG
* * * *
1848 GCAGAAAATGCTGGGGTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGCC
66 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCC
* * * *
1912 GGAGCATCACCAGAGAACTTGACCAACGGCATTGGGGTTTGATGATCGGGGGGGCCGGGGGGTGT
130 GGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTTGACGATC-GGGGGGCCGGGGGGTGT
*
1977 GCGCACATAATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
194 GCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
2042 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
259 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
2107 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTG
324 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
2172 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
389 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * *
2237 CTCCTTCCAAAATATTTTTAAAAAATCTCGAGTCATAAAAAGTTTCAAAAATCATGAAAAATAAA
454 CTCCTTCCAAAAAAATTTTAAAAAATCCCGA-ACATAAAAAGTTTCAAAAATCGTGAAAAATAAA
*
2302 AAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
518 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
2367 CCATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
583 CCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
2432 ATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGTATAGTGCCCACCCGCCCGCTCGTTTGGTCG
648 ATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGTCG
* * * *
2497 GTTGGCTTAGGCATACGGAGTTCATTCCCAGAGTAAGATCAGATCAGACCGAGAGTTACGGCTGC
713 GTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGACCAGACCAAGAGTTACGGCTGC
* * *
2562 AAGATCGGCAGCACGCAGAGGGAGACCCGATCGATCCCTGGCTTGAGCATCCCGCCCCTCTGGCC
778 AAGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCC
* *
2627 GGCAGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-T
843 GACAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
2676 ATCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGT
1 -TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGC
* * *
2741 GGCAGCACATGCTCGGCTC-AGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCAC
65 GGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGC
* *
2805 CGGAGCATCGTC-GAGAACCTGACCGATGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGT
129 CGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTT-TGACGATCGGGGGGCC-GGGGGGT
* **
2869 GTGCGCACATGATGT-ACGATGTGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCATC
192 GTGCGCACATGATGTGA-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
2933 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAACC
256 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
2998 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGGTT
321 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
3063 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCA
386 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* *
3128 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTCAAAAATCGTGAAAAAT
451 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC-ATAAAAAGTTTCAAAAATCGTGAAAAAT
*
3193 AAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
515 AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
3258 AAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
580 AAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * * *
3323 TCGATCCACGGCTTGCGCATCCCTTCTCTCTAGCCGACGTAGTGCCCGTCCGCCCGTCCGCTTGT
645 TCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG--C--CCACCCGCCCGCTCGT
* * ** * * * * *
3388 TTCGTCGGTTGGCTTAGACATACAGAGTTCATTCCCATTCTGAGATTGGATCAGACTAAGAGTTG
706 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGACCAGACCAAGAGTTA
* * ** * * * * * *
3453 TGACAACAGGATCAGCAGCACGTAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCC-ACCC
771 CGGCTGCAAGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGAGCATCCCGCCCC
*
3517 TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
836 TCTGGCCGACAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
3574 TCATT--C---C----C--A---A--TC--T----G----AGATTGGACCGGACCGAGGGTTGTG
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCG
* * *
3613 GCAACACATGCTGGGCTGGAGCATGTGCTGGTGCCACA-TTTTCTTGGTCGGGGCACCATCGCCG
66 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCG
* * *
3677 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG-TT--C---C-GGCGACCGGGGGGTGTGC
131 GAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTTGACGATCGGGGGGCCGGGGGGTGTGC
*
3735 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
196 GCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
3800 TCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAA
261 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
3865 AGTGAT-TGAAATGGGGACACTTTTATCAAATGGTCACAACATGTTGTACACTTCGAGTTTTTAG
326 AGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
3929 CTGAATTTTTTTGTGCACGCCAACAAAAATACAAAGATCATGTCTACCAAGTTTGGGGAC-AAAC
390 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
3993 TCCTTCCAAAAAAATTTAAAAAAATCCCGAAC-TGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
455 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACAT--AAAAAGTTTCAAAAATCGTGAAAAATAAA
* *
4057 AAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACACA
518 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA-A
* * *
4122 -CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCAACTACCACCCTATC
582 GCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
4186 GATCCATGGCTTGTGCATCCCGTCTCTGTGGCTGGCGTAGTGCCCATCTGCCCGCCTGCTCGTTT
647 GATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCA----CCCGCCCGCTCGTTT
*
4251 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
708 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGAC
4300 TGGACCGAGG
Statistics
Matches: 3026, Mismatches: 317, Indels: 159
0.86 0.09 0.05
Matches are distributed among these distances:
857 2 0.00
859 1 0.00
861 273 0.09
862 242 0.08
863 6 0.00
864 1 0.00
867 1 0.00
869 1 0.00
870 34 0.01
871 78 0.03
872 1 0.00
875 1 0.00
879 1 0.00
881 2 0.00
883 19 0.01
884 9 0.00
885 47 0.02
886 9 0.00
887 3 0.00
888 30 0.01
889 119 0.04
890 338 0.11
891 25 0.01
892 311 0.10
893 201 0.07
894 920 0.30
895 23 0.01
896 72 0.02
897 141 0.05
898 115 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCG
GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCG
GAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTTGACGATCGGGGGGCCGGGGGGTGTGC
GCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCAAAAAAATTTTAAAAAATCCCGAACATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCCGCTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGACCAGACCAAGAGTTACGGCTGCAAG
ATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGAC
AGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
Found at i:5347 original size:10 final size:9
Alignment explanation
Indices: 5324--5348 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
5314 TTCCGGCGAT
5324 CGGGGGGCC
1 CGGGGGGCC
5333 CGGGGGGCC
1 CGGGGGGCC
5342 CGGGGGG
1 CGGGGGG
5349 TATGCGCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.28, G:0.72, T:0.00
Consensus pattern (9 bp):
CGGGGGGCC
Found at i:7370 original size:57 final size:57
Alignment explanation
Indices: 7243--7512 Score: 420
Period size: 58 Copynumber: 4.7 Consensus size: 57
7233 CTTTGTGTAG
* *
7243 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTG-AAATTTATTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-GTTTTTTGAAAATTTATTTTTAA
7299 GG-AAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTGAAAATTTATTTTTAA
*
7355 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCC-AAAA-ATGTTTTTTGAAAATTTATTTTTAA
*
7414 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTTTAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATG-TTTTTTGAAAATTTATTTTTAA
* * *
7472 GGAAAATTGCTACTTTCAACTTTTCCCTAAAAATATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTT
7513 TTGGAAATTT
Statistics
Matches: 200, Mismatches: 8, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
55 28 0.14
56 26 0.13
57 33 0.17
58 61 0.31
59 52 0.26
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTGAAAATTTATTTTTAA
Found at i:7425 original size:59 final size:59
Alignment explanation
Indices: 7243--7531 Score: 448
Period size: 59 Copynumber: 5.0 Consensus size: 59
7233 CTTTGTGTAG
*
7243 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATA-TTTTTTTG-AAATTTATTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
*
7299 GG-AAATTGATACTTTCAACTTTTCCCC-AAAA-ATGTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
7355 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
* *
7414 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-GTTTTTTTGAAAATTTATTTTTAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
* * *
7472 GGAAAATTGCTACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT-GAAAATTT-ATTTTTA
7532 TTTAAAGAAA
Statistics
Matches: 215, Mismatches: 9, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
54 1 0.00
55 32 0.15
56 20 0.09
57 25 0.12
58 58 0.27
59 65 0.30
60 7 0.03
61 7 0.03
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
Found at i:7558 original size:14 final size:14
Alignment explanation
Indices: 7539--7596 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
7529 TTATTTAAAG
*
7539 AAAATAGAATAATA
1 AAAATAGAAAAATA
7553 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
7567 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
7582 AAAAT--AAAAATA
1 AAAATAGAAAAATA
7594 AAA
1 AAA
7597 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:7566 original size:17 final size:17
Alignment explanation
Indices: 7546--7596 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
7536 AAGAAAATAG
7546 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
7563 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
7581 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
7597 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:7605 original size:17 final size:16
Alignment explanation
Indices: 7583--7622 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
7573 AGTAAAACAA
*
7583 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
7599 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
7616 AAATAAA
1 AAATAAA
7623 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:8075 original size:19 final size:20
Alignment explanation
Indices: 8034--8079 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
8024 TCCGGTGAGA
* *
8034 TTTTCGTCGGATTCTGGGTT
1 TTTTCATCGGAATCTGGGTT
8054 TTTTCATCGGAATCTGGGTT
1 TTTTCATCGGAATCTGGGTT
8074 TTTTCA
1 TTTTCA
8080 CCGAAAGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.11, C:0.15, G:0.24, T:0.50
Consensus pattern (20 bp):
TTTTCATCGGAATCTGGGTT
Found at i:8752 original size:3 final size:3
Alignment explanation
Indices: 8744--8788 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
8734 AAAGATATAC
8744 ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA A-A ATA CATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA -ATA ATA ATA
8789 CAAAAGAAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
2 4 0.11
3 28 0.74
4 6 0.16
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:9004 original size:10 final size:9
Alignment explanation
Indices: 8989--9044 Score: 71
Period size: 9 Copynumber: 6.3 Consensus size: 9
8979 AACATTGTCA
8989 TTTTTTGTT
1 TTTTTTGTT
*
8998 TTGTTT-TT
1 TTTTTTGTT
*
9006 TTTTTGGTT
1 TTTTTTGTT
9015 TTTTTTG-T
1 TTTTTTGTT
9023 TTTTTTGTTT
1 TTTTTTG-TT
9033 TTTTTTGTT
1 TTTTTTGTT
9042 TTT
1 TTT
9045 GACCAAAGCC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
8 14 0.35
9 18 0.45
10 8 0.20
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:9016 original size:8 final size:8
Alignment explanation
Indices: 8989--9045 Score: 64
Period size: 8 Copynumber: 6.9 Consensus size: 8
8979 AACATTGTCA
8989 TTTTTTGT
1 TTTTTTGT
8997 TTTGTTT-T
1 TTT-TTTGT
9005 TTTTTTGGTT
1 TTTTTT-G-T
9015 TTTTTTGT
1 TTTTTTGT
9023 TTTTTTGT
1 TTTTTTGT
9031 TTTTTT-T
1 TTTTTTGT
9038 TGTTTTTG
1 T-TTTTTG
9046 ACCAAAGCCC
Statistics
Matches: 43, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
7 5 0.12
8 27 0.63
9 4 0.09
10 7 0.16
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (8 bp):
TTTTTTGT
Found at i:9017 original size:18 final size:17
Alignment explanation
Indices: 8989--9045 Score: 73
Period size: 17 Copynumber: 3.4 Consensus size: 17
8979 AACATTGTCA
*
8989 TTTTTT-GTTTTGTTTT
1 TTTTTTGGTTTTTTTTT
9005 TTTTTTGGTTTTTTTTGT
1 TTTTTTGGTTTTTTTT-T
9023 TTTTTT-GTTTTTTTTT
1 TTTTTTGGTTTTTTTTT
*
9039 GTTTTTG
1 TTTTTTG
9046 ACCAAAGCCC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
16 12 0.33
17 17 0.47
18 7 0.19
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (17 bp):
TTTTTTGGTTTTTTTTT
Found at i:9196 original size:41 final size:41
Alignment explanation
Indices: 9055--9196 Score: 194
Period size: 41 Copynumber: 3.5 Consensus size: 41
9045 GACCAAAGCC
* * *
9055 CCTCTAAACAGAGGCTCAACGACTTTGGAAAATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
* * * *
9096 CCTCTACACAAAGGCACCATGACTTTTGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
* *
9137 CCTCTAAACAGAGCCACCACAACTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
*
9178 CCTCTAAATAGAGGCACCA
1 CCTCTAAACAGAGGCACCA
9197 AATTGCTCCT
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 86 1.00
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.23
Consensus pattern (41 bp):
CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
Found at i:9199 original size:26 final size:26
Alignment explanation
Indices: 9170--9222 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
9160 TTTGGAAAGT
*
9170 AAATTGCTCCTCTAAATAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
9196 AAATTGCTCCTCTAAACAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
9222 A
1 A
9223 CGACTTTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.21
Consensus pattern (26 bp):
AAATTGCTCCTCTAAACAGAGGCACC
Found at i:9255 original size:42 final size:42
Alignment explanation
Indices: 9196--9414 Score: 365
Period size: 42 Copynumber: 5.3 Consensus size: 42
9186 TAGAGGCACC
9196 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
*
9238 AAATTGCTCCTCTAAACAGAGGCACCACAACTTTGGAAAA-T
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
* *
9279 AAAATGCTCCTCTAAAGAGAGGCACCACGACTTTGGAAAAGT
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
9321 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
9363 AAATTGCTCCTCTAAACAGAGGCA--ACGGAACTTTGG-AAAGT
1 AAATTGCTCCTCTAAACAGAGGCACCAC-G-ACTTTGGAAAAGT
9404 AAATTGCTCCT
1 AAATTGCTCCT
9415 TGACAATCAT
Statistics
Matches: 168, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
40 2 0.01
41 55 0.33
42 111 0.66
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.22
Consensus pattern (42 bp):
AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
Found at i:9287 original size:109 final size:108
Alignment explanation
Indices: 9088--9305 Score: 355
Period size: 109 Copynumber: 2.0 Consensus size: 108
9078 TTTGGAAAAT
* * *
9088 AAATTGCTCCTCTACACAAAGGCACCATGACTTTTGAAAGTAAATTGCTCCTCTAAACAGAGCCA
1 AAATTGCTCCTCTAAACAAAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGCCA
* * *
9153 CCACAACTTTGGAAAGTAAATTGCTCCTCTAAATAGAGGCACC
66 CCACAACTTTGGAAAATAAAATGCTCCTCTAAAGAGAGGCACC
* *
9196 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGC
1 AAATTGCTCCTCTAAACAAAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGCC
9261 ACCACAACTTTGGAAAATAAAATGCTCCTCTAAAGAGAGGCACC
65 ACCACAACTTTGGAAAATAAAATGCTCCTCTAAAGAGAGGCACC
9305 A
1 A
9306 CGACTTTGGA
Statistics
Matches: 101, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
108 32 0.32
109 69 0.68
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (108 bp):
AAATTGCTCCTCTAAACAAAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGCCA
CCACAACTTTGGAAAATAAAATGCTCCTCTAAAGAGAGGCACC
Found at i:9339 original size:83 final size:84
Alignment explanation
Indices: 9200--9414 Score: 357
Period size: 83 Copynumber: 2.6 Consensus size: 84
9190 GGCACCAAAT
9200 TGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 TGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
9265 CAACTTTGGAAAA-TAAAA
66 CAACTTTGGAAAAGTAAAA
*
9283 TGCTCCTCTAAAGAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 TGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
* *
9348 CGACTTTGGAAAAGTAAAT
66 CAACTTTGGAAAAGTAAAA
9367 TGCTCCTCTAAACAGAGGCA--ACGGAACTTTGG-AAAGTAAATTGCTCCT
1 TGCTCCTCTAAACAGAGGCACCAC-G-ACTTTGGAAAAGTAAATTGCTCCT
9415 TGACAATCAT
Statistics
Matches: 125, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
82 2 0.02
83 93 0.74
84 30 0.24
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.22
Consensus pattern (84 bp):
TGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
CAACTTTGGAAAAGTAAAA
Found at i:10662 original size:16 final size:15
Alignment explanation
Indices: 10641--10686 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 15
10631 CATTTTCTCA
10641 TTTCTTTCTTCTTTTT
1 TTTCTTTCTT-TTTTT
10657 TTTCTTT-TGTTTTTT
1 TTTCTTTCT-TTTTTT
10672 TCTTCTTTCTTTTTT
1 T-TTCTTTCTTTTTT
10687 CATCATCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 7 0.26
16 19 0.70
17 1 0.04
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (15 bp):
TTTCTTTCTTTTTTT
Found at i:10664 original size:28 final size:26
Alignment explanation
Indices: 10624--10699 Score: 73
Period size: 28 Copynumber: 2.8 Consensus size: 26
10614 TTTGAATCTC
10624 TTTTTTTCATTTTCTCATTTCTTTCTTCT
1 TTTTTTTCATTTTCT--TTT-TTTCTTCT
*
10653 TTTTTTTC-TTTTGTTTTTTTCTTCTT
1 TTTTTTTCATTTTCTTTTTTTCTTC-T
**
10679 TCTTTTTTCATCATCTTTTTT
1 T-TTTTTTCATTTTCTTTTTT
10700 CATTTTTCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 7 0.17
26 5 0.12
27 7 0.17
28 13 0.32
29 8 0.20
ACGTcount: A:0.05, C:0.17, G:0.01, T:0.76
Consensus pattern (26 bp):
TTTTTTTCATTTTCTTTTTTTCTTCT
Found at i:10684 original size:13 final size:12
Alignment explanation
Indices: 10645--10685 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
10635 TTCTCATTTC
10645 TTTCTTCTTTTT
1 TTTCTTCTTTTT
*
10657 TTTCTTTTGTTTT
1 TTTCTTCT-TTTT
10670 TTTCTTCTTTCTT
1 TTTCTTCTTT-TT
10683 TTT
1 TTT
10686 TCATCATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 9 0.36
13 16 0.64
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (12 bp):
TTTCTTCTTTTT
Found at i:10695 original size:20 final size:20
Alignment explanation
Indices: 10672--10710 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10662 TTTGTTTTTT
*
10672 TCTTCTTTCTTTTTTCATCA
1 TCTTCTTTCATTTTTCATCA
*
10692 TCTTTTTTCATTTTTCATC
1 TCTTCTTTCATTTTTCATC
10711 CGTTGTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.23, G:0.00, T:0.67
Consensus pattern (20 bp):
TCTTCTTTCATTTTTCATCA
Found at i:15234 original size:3 final size:3
Alignment explanation
Indices: 15228--15263 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
15218 AAAGATATAC
15228 ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
15264 CAAAAAAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 26 0.84
4 3 0.10
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:16124 original size:26 final size:26
Alignment explanation
Indices: 16094--16146 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16084 GTTGACTTAG
*
16094 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16120 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16146 G
1 G
16147 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16999 original size:26 final size:26
Alignment explanation
Indices: 16969--17021 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16959 GTTGACTTAG
* *
16969 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16995 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17021 G
1 G
17022 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17506 original size:898 final size:879
Alignment explanation
Indices: 15380--19194 Score: 5173
Period size: 876 Copynumber: 4.3 Consensus size: 879
15370 GGTGTCTACA
* *
15380 GGGGGCCAAGGGGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
15445 CCCTATCCCTCATCAGACCTCGAGGACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTT
* *
15510 TGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAACATCTT
130 TGCTGCCAGTAGCCATTAAAGTGTCT-AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
15574 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-TGGCCAACAAAAATACAAGGATCACGTCT
194 GTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT-GCCAACAAAAATACAAGGAT-ACGTCT
** * * **
15638 ACCAAGTTTGGGAACAAAA-TGCCTTCCGAAAAAATTTTAAAAAA-TCTTGAACC-TCAAAAAGT
257 ACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAACTTTAAAAAATTC-CAAACCGT-AAAAAGT
* *
15700 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGG
319 TTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
15765 GACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGA-ATGCAGAAATATGAAGATGTGCC
384 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-CACATGCAGAAATATGAAGATGTGCC
* * * *
15829 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCATAGTAC
448 TAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT--
* * * * *
15894 CCGCCCGCCAGCCCGCCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTAT
511 --GCCCGCCCGCCC-CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCT
* * * * * * ** * *
15959 AGGATC-AGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGTAGAGGAAAACGCGATCG
573 AAGATCGA-ACCGGACCGAGGGTTGTGGCAGCAGGATTGGTAGCACGCAGAGG-GGACCCGACCG
* * * *
16023 ATCCCCGGCTTGCGCATCCCGCCCCACTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTG
636 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGCTTG
* **
16088 ACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
701 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * ** *
16153 CCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTGTTTTTCTTCG
766 -CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCA
** *
16218 TTGGGGCA-CCATCGTC-G-----GA-GGCATTGGGGTT-TCGGCGATCGG
830 CCGGGGCATCCATCGTCGGACCTAGACGGCATTGGGGTTCT-AGCGATCGG
*
16260 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGTGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
16325 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
*
16390 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGT
131 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
16455 ACACTTCGAGTTTTTAGCTAAATTTTTTTAG-GCATGCCAACAAAAATACAAGGATCATGTCTAC
196 ACACTTCGAGTTTTTAGCTGAATTGTTTT-GTGCATGCCAACAAAAATACAAGGAT-ACGTCTAC
* ** * * * *
16519 CAAGTTTGGGGCCAAAATTCCTTCCAAAAAAGGTTTGAAAAATTCCGAACCGCAAAAAGTTTTGA
259 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAACTTTAAAAAATTCCAAACCGTAAAAAGTTTTAA
*
16584 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
324 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
16649 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-CA-GCAAAAATATGAAGATGTGCCTAAA
389 TTGTATGAATTTACAAGCCATAAAAATGGCATT--CACATGCAGAAATATGAAGATGTGCCTAAA
* * *
16712 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGGGCCCGC
452 CCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
16777 CCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGA
517 CCGCCC-CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGA
* * *
16842 ACCGGACCAAGGGTTGTGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGTC
581 ACCGGACCGAGGGTTGTGGCAGCAGGATTGGTAGCACGCAGA-GGGGACCCGACCGATCCCCGGC
* * * * *
16907 TTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGTATGCTAGTTTCATGGGTTGACTTAGGCA
645 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGCTTGACTTAGGCA
* * ** *
16972 TACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAA
710 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGA
* *
17037 GGGTTGCGACAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCAC
774 GGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG---
17102 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTAGCGATC-G
836 CAT---C----CATCGTC-G-G-ACCT-A--GACGGCATTGGGGTTCTAGCGATCGG
* * *
17158 GGGGGCTGGGTGGGTGTGTGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
17223 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTT
* *
17288 T-CTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
130 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
17352 TACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGACTGCGTCTAC
195 TACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA-TACGTCTAC
* * * *
17417 CAAGATTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAA
259 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAACTTTAAAAAATTCCAAACCGTAAAAAGTTTTAA
* * *
17482 AAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
324 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
17547 TTGTATGAATTTACAAGCCATAAAAATGGCATTCACATGCAGAAATATGAAGATGTGCCTAAACC
389 TTGTATGAATTTACAAGCCATAAAAATGGCATTCACATGCAGAAATATGAAGATGTGCCTAAACC
*** * *
17612 AACCTATTGCCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGTAGTGCCCGCCC
454 AACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
* * *
17677 G---CCGGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGA-CTAAGATCGGAC
519 GCCCCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCGAAC
** * * * * ** *
17738 CGGACCGAGGGTTACGGCAACAAGATTGGTAGCATGCAGAGGGGACTCGGTCGATCCCCGGCTTA
583 CGGACCGAGGGTTGTGGCAGCAGGATTGGTAGCACGCAGAGGGGACCCGACCGATCCCCGGCTTG
* *
17803 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTGAATTAGGCATAC
648 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGCTTGACTTAGGCATAC
* * *
17868 GGAGTGCATTCCCAGTCTAAGGATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
713 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGG
* * * * *
17933 TTGCGGTAGCACATGCTAGGC-TGAGGAATGTGCTGGTGCCGCATTTTCCTTCATCGGGGCAT-C
777 TTGCGGCAGCACATGCTGGGCTTG-GGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCATCC
* *
17996 ATCGTCGGA--T----GGCATTGGGGTTC-CGACGATCTG
841 ATCGTCGGACCTAGACGGCATTGGGGTTCTAG-CGATCGG
* * *
18029 GGGGGCCGGGGGGTGTGCGTACATGATATGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
18094 CCTATCCCTTATCAAACCTCGAGAACTCACA-CCCCTTGAAAAAGCTTTTGAGATTTTACAGGTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAAAGCATTTGAGATTTTACAGGTT
*
18158 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTG
130 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
18223 TCCACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTAC
195 TACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA-TACGTCTAC
* *
18288 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAACTTTAAAAAATTCTAAACCGTAAAAAGTTTCAA
259 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAACTTTAAAAAATTCCAAACCGTAAAAAGTTTTAA
*
18353 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCA
324 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
18418 TTGTATCAATTTACAAGCCATAAAAATGGCATTCACATGCAGAAATATGAAGATGTGCCTAAACC
389 TTGTATGAATTTACAAGCCATAAAAATGGCATTCACATGCAGAAATATGAAGATGTGCCTAAACC
* *
18483 AACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
454 AACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
* * *
18548 GCCCGTCCGCCCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAATCTAAGATC-AGA
519 GCCC-CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGA-A
* * * * * * *
18612 CCGGACTGAGGGTTGTAGTAGCAGGATCGGTAGCTCACAGAAGGGGACCCGACCGATCCTCGGCT
582 CCGGACCGAGGGTTGTGGCAGCAGGATTGGTAGCACGCAG-AGGGGACCCGACCGATCCCCGGCT
* * ** *
18677 TGCGCATCCTGCCCCTTTGGCCGATTGAGCGCCCGTACGCTCGTTTCGTGGCTTGACTTAGGCAT
646 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGCTTGACTTAGGCAT
18742 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAG
711 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAG
* * * * ** *
18807 GGTTACGGCAGCACATGCTGGGCTCGAGCATGTG-TCGGCGCCATATTTTTCTTTACCGGGGCA-
775 GGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCT-GGTGCCGCATTTTTCTTCACCGGGGCAT
*
18870 CCA---TC-G-CC-AGACGGCATTGGGGTTCCAGCGATCGG
839 CCATCGTCGGACCTAGACGGCATTGGGGTTCTAGCGATCGG
* * * * *
18905 GCGGGTCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCC
1 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
18970 CCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
** * * *
19035 GCTGCCAGTAGCCACAAAAGTGT-TCGAAATAGGGACACTTTTTTCAAATAGTCACAAAATCTTG
131 GCTGCCAGTAGCCATTAAAGTGTCT-AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
19099 TACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCAAACAAAAATACAAGGATCACGTCTAC
195 TACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTAC
*
19164 CAAGTTTAGGGCCAAAACTCCTTCCAAAAAA
259 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
19195 TAGAAAATGA
Statistics
Matches: 2625, Mismatches: 243, Indels: 138
0.87 0.08 0.05
Matches are distributed among these distances:
869 7 0.00
870 124 0.05
871 375 0.14
872 1 0.00
873 2 0.00
874 1 0.00
875 368 0.14
876 465 0.18
877 9 0.00
878 2 0.00
879 460 0.18
880 16 0.01
881 1 0.00
882 8 0.00
886 7 0.00
889 1 0.00
890 3 0.00
892 2 0.00
893 183 0.07
894 88 0.03
895 1 0.00
896 1 0.00
897 3 0.00
898 362 0.14
899 134 0.05
900 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCAAAAAAACTTTAAAAAATTCCAAACCGTAAAAAGTTTTAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTCACATGCAGAAATATGAAGATGTGCCTAAACCAA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
CCCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGG
ACCGAGGGTTGTGGCAGCAGGATTGGTAGCACGCAGAGGGGACCCGACCGATCCCCGGCTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGCTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGC
GGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCATCCATCGT
CGGACCTAGACGGCATTGGGGTTCTAGCGATCGG
Found at i:18767 original size:26 final size:26
Alignment explanation
Indices: 18738--18790 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18728 CTTGACTTAG
18738 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18764 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18790 G
1 G
18791 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19094 original size:876 final size:875
Alignment explanation
Indices: 15380--19194 Score: 5340
Period size: 879 Copynumber: 4.3 Consensus size: 875
15370 GGTGTCTACA
* *
15380 GGGGGCCAAGGGGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
15445 CCCTATCCCTCATCAGACCTCGAGGACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
15510 TGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAACATCTTG
130 TGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
15575 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-TGGCCAACAAAAATACAAGGATCACGTCTA
195 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTA
** * **
15639 CCAAGTTTGGGAACAAAA-TGCCTTCCGAAAAAATTTTAAAAAA-TCTTGAACC-TCAAAAAGTT
259 CCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAAATTC-CAAACCGT-AAAAAGTT
*
15701 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGG
321 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
15766 ACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGA-ATGCAGAAATATGAAGATGTGCCT
386 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCACATGCAGAAATATGAAGATGTGCCT
* * * *
15830 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCATAGTACC
451 AAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCC
* * * *
15895 CGCCCGCCAGCCCGCCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATA
516 CGCCCGCCCGCCCGCCCG----TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTA
* * * ** * *
15960 GGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGTAGAGGAAAACGCGATCGAT
577 AGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGG-GGACCCGACCGAT
* * *
16025 CCCCGGCTTGCGCATCCCGCCCCACTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
641 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTGAC
* **
16090 TTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* ** ***
16155 GGATCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTGTTTTTCTTCGTT
771 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACC
* * * *
16220 GGGGCACCATCGTCGGA-GGCATTGGGGTTTCGGCGATCGG
836 GGGGCACCATCGCCAGACGGCATTGGGGTTCCAGCGATC-G
*
16260 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGTGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
16325 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
16390 GCTGCCAGTAGCCATTAAAGTG-TCTAAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTG
131 GCTGCCAGTAGCCATTAAAGTGTTC-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
16454 TACACTTCGAGTTTTTAGCTAAATTTTTTTAG-GCATGCCAACAAAAATACAAGGATCATGTCTA
195 TACACTTCGAGTTTTTAGCTGAATTTTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTA
* ** * * * **
16518 CCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAGGTTTGAAAAATTCCGAACCGCAAAAAGTTTTG
259 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCA
*
16583 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
324 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
16648 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-CA-GCAAAAATATGAAGATGTGCCTAA
389 ATTGTATGAATTTACAAGCCATAAAAATGGCATT-GCACATGCAGAAATATGAAGATGTGCCTAA
* *
16711 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGGGCCCG
453 ACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCG
* *
16776 CCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC-
518 CCCGCCCGCCCGCCCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCA
* * * * *
16840 GAACCGGACCAAGGGTTGTGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCG
583 G-ACCGGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGA-GGGGACCCGACCGATCCCCG
* * * * * * *
16905 TCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGTATGCTAGTTTCATGGGTTGACTTAGG
646 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGG
* * ** *
16970 CATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACC
711 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * * * *
17035 AAGGGTTGCGACAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
776 GAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG-
*
17100 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTAGCGATCG
840 --CA----C----CA---TC---G--CC--A--GACGGCATTGGGGTTCCAGCGATCG
* * *
17158 GGGGGCTGGGTGGGTGTGTGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
17223 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
17288 T-CTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
130 TGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
17352 TACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA-CTGCGTCTA
195 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC-ACGTCTA
* * * *
17416 CCAAGATTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTA
259 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCA
* * *
17481 AAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
324 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
17546 ATTGTATGAATTTACAAGCCATAAAAATGGCATT-CACATGCAGAAATATGAAGATGTGCCTAAA
389 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGCACATGCAGAAATATGAAGATGTGCCTAAA
*** * * *
17610 CCAACCTATTGCCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGTAGTGCCCGC
454 CCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGC
* * *
17675 CCG-CCG---GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGA-CTAAGATCG
519 CCGCCCGCCCGCCCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCA
* * * * * **
17735 GACCGGACCGAGGGTTACGGCAACAAGATTGGTAGCATGCAGAGGGGACTCGGTCGATCCCCGGC
583 GACCGGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGACCCGACCGATCCCCGGC
* *
17800 TTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTGAATTAGGCA
648 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCA
* * *
17865 TACGGAGTGCATTCCCAGTCTAAGGATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
713 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * * * *
17930 GGGTTGCGGTAGCACATGCTAGGCT-GAGGAATGTGCTGGTGCCGCATTTTCCTTCATCGGGGCA
778 GGGTTACGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
* * * *
17994 TCATCGTCGGATGGCATTGGGGTTCC-GACGATCTG
842 CCATCGCCAGACGGCATTGGGGTTCCAG-CGATC-G
* * *
18029 GGGGGCCGGGGGGTGTGCGTACATGATATGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
18094 CCTATCCCTTATCAAACCTCGAGAACTCACA-CCCCTTGAAAAAGCTTTTGAGATTTTACAGGTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTT
* *
18158 TGCTGCCAGTAGCCATTAAAGTG-TCTAAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTT
130 TGCTGCCAGTAGCCATTAAAGTGTTC-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
18222 GTCCACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTA
194 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* *
18287 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAACTTTAAAAAATTCTAAACCGTAAAAAGTTTCA
259 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCA
*
18352 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACC
324 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
18417 ATTGTATCAATTTACAAGCCATAAAAATGGCATT-CACATGCAGAAATATGAAGATGTGCCTAAA
389 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGCACATGCAGAAATATGAAGATGTGCCTAAA
* * *
18481 CCAACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
454 CCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGC
* *
18546 CCGCCCGTCCGCCCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAATCTAAGATCAG
519 CCGCCCGCCCGCCCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG
* ** * * * * *
18611 ACCGGACTGAGGGTTGTAGTAGCAGGATCGGTAGCTCACAGAAGGGGACCCGACCGATCCTCGGC
584 ACCGGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAG-AGGGGACCCGACCGATCCCCGGC
* * ** * *
18676 TTGCGCATCCTGCCCCTTTGGCCGATTGAGCGCCCGTACGCTCGTTTCGTGGCTTGACTTAGGCA
648 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCA
*
18741 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGA
713 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* ** *
18806 GGGTTACGGCAGCACATGCTGGGCTCGAGCATGTG-TCGGCGCCATATTTTTCTTTACCGGGGCA
778 GGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCT-GGTGCCGCATTTTTCTTCACCGGGGCA
18870 CCATCGCCAGACGGCATTGGGGTTCCAGCGATCG
842 CCATCGCCAGACGGCATTGGGGTTCCAGCGATCG
* * * *
18904 GGCGGGTCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCC
1 GG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
18969 CCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
** * *
19034 TGCTGCCAGTAGCCACAAAAGTGTTCGAAATAGGGACACTTTTTTCAAATAGTCACAAAATCTTG
130 TGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
19099 TACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCAAACAAAAATACAAGGATCACGTCTAC
195 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
*
19164 CAAGTTTAGGGCCAAAACTCCTTCCAAAAAA
260 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
19195 TAGAAAATGA
Statistics
Matches: 2623, Mismatches: 251, Indels: 126
0.87 0.08 0.04
Matches are distributed among these distances:
869 7 0.00
870 127 0.05
871 372 0.14
872 3 0.00
874 3 0.00
875 350 0.13
876 472 0.18
877 11 0.00
878 4 0.00
879 477 0.18
880 14 0.01
882 3 0.00
886 2 0.00
889 2 0.00
890 2 0.00
892 2 0.00
893 183 0.07
894 86 0.03
895 2 0.00
896 1 0.00
897 6 0.00
898 360 0.14
899 134 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAA
AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGCACATGCAGAAATATGAAGATGTGCCTAAACC
AACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCC
GCCCGCCCGCCCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
CGGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGACCCGACCGATCCCCGGCTTG
CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
TTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT
CGCCAGACGGCATTGGGGTTCCAGCGATCG
Found at i:19598 original size:26 final size:26
Alignment explanation
Indices: 19562--19614 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19552 GTTGACTTAG
* *
19562 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
19588 GCATACGGAGTTCAATCCCAATCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
19614 G
1 G
19615 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAATCTAA
Found at i:19994 original size:847 final size:858
Alignment explanation
Indices: 18881--20759 Score: 2225
Period size: 847 Copynumber: 2.1 Consensus size: 858
18871 CATCGCCAGA
* * *
18881 CGGCATTGGGGTTCCAGCGATCGGGCGGGTCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
1 CGGCATTAGGGTTCCAGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
* *
18946 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
19011 AAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACAAAAGTGTTCGAAATAGGGACACTTT
130 AAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACAAAAGCGTTCAAAATAGGGACACTTT
*
19076 TTTCAAATAGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCAAAC
195 TTTCAAATAGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATCCAAAC
*
19141 AAAAATACAAGGATCACGTCTACCAAGTTTAGGG-C-C-AAAA-CTC-C-TTC-CA-AAAAATAG
260 AAAAATACAAGGATCACGTCTACCAAGTTTAGGGACTCAAAAATCTCACATTCACAGAAAAATAA
19198 AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAA
325 AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAA
* *
19263 GCCATAAAAATGGCGTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
390 GCCATAAAAATGGCGTTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATC
* * * * * **
19328 AATCCATGGCTTGCGCATCCTGTCTCTCTGGTCGGCGTA-G-T-GCCT-GCCCGCTTGCTC-TTT
455 AATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGGCTCGCCTCGCCCGCCCGCTCGTTT
* * *
19388 GCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTG
520 -CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGATTG
** * * * **
19452 TGGTAGTAGGATCTG-TGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCCACCCC
583 CAGTAGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCACCCC
* *
19516 ACTAGCCGACTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
648 ACTAGCCGACTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * ** ** *
19581 AGTCTAAGCATACGGAGTTCAATCCCAATCTAAGATCGGATCGGACTGAGGGTTCCTGTAGCACA
713 AGTCTAAGCATACGGAGTTCAATCCCAATCAAAGATCGGACCGGACCAAGGGTTCAGGCAGCACA
* * * ** * **
19646 T-ATAGGGCTCGGGTATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGCCAGAGCATC
778 TGACA-GGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCAGAGCATC
*
19710 ACCGGAGAACCTGACTGG
842 -CCGGAGAACCTGACCGG
*
19728 CGGCATTAGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
1 CGGCATTAGGGTTCCAGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
*
19793 GGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* ** ** *
19858 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGCG-TCTAAAATGGGGACACTT
130 AAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACAAAAGCGTTC-AAAATAGGGACACTT
* * * * *
19922 TTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCGTACCAA
194 TTTTCAAATAGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCAT-CCAA
* *
19987 A-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAA
258 ACAAAAATACAAGGATCACGTCTACCAAGTTTAGGG------A--C--TC-----------AAAA
20051 ATCTCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAAC
302 ATCTC--A-C------A--TTC----A-CA-GAAAAATAAAAAATGAGTCGTCTTGCCATGAAAC
* * ** * *
20116 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCTTTGGCATGCA
350 TTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCGTTGGCACGCA
* *
20181 GAAATATGAAGATGTGCCTAAACCCACCCACCACGCTATCGATCCACGGCTTGCGCATCCCGCCT
415 GAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCAATCCACGGCTTGCGCATCCCGCCT
20246 CTCTGGCCGACGTAGTGCCCTCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
480 CTCTGGCCGACGTAG-G--CT--CGCCT---CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
20311 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGATTGCAGTAGTAGGATCGGCAGC
537 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGATTGCAGTAGTAGGATCGGCAGC
** ** * * ** **
20376 ACACAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCTGCCCCTCTGGTTGGTTGAGCGCCC
602 ACACAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCACCCCACTAGCCGACTGAGCGCCC
* *
20441 GCATGCTTGTTTCATGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
667 GCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
20506 CATTCCCAGTCAAAGATCGGACCGGACCAAGGGTTGAGGCAGCACGTGCCAGGCTCGAGCATGTG
732 CAATCCCAATCAAAGATCGGACCGGACCAAGGGTTCAGGCAGCACATGACAGGCTCGAGCATGTG
*** * *
20571 CTGGTGTTGCATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGCGGAGAACCTGACCGG
797 CTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCAGAGCATCCCGGAGAACCTGACCGG
* * *
20633 CGTCATTAGGGTTTC-GACGAT--GGGGGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
1 CGGCATTAGGGTTCCAG-CGATCGGGGGGGTCG-GGGGGTGTGCGCACATGATGTGTGATGGGTG
** *
20695 CTGAAACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
20760 TATTGGACCA
Statistics
Matches: 865, Mismatches: 100, Indels: 77
0.83 0.10 0.07
Matches are distributed among these distances:
846 2 0.00
847 262 0.30
848 4 0.00
856 1 0.00
859 1 0.00
871 4 0.00
872 3 0.00
876 1 0.00
885 3 0.00
891 2 0.00
893 161 0.19
895 1 0.00
898 1 0.00
901 4 0.00
903 12 0.01
904 87 0.10
905 112 0.13
906 203 0.23
907 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (858 bp):
CGGCATTAGGGTTCCAGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAA
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACAAAAGCGTTCAAAATAGGGACACTTTT
TTCAAATAGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATCCAAACA
AAAATACAAGGATCACGTCTACCAAGTTTAGGGACTCAAAAATCTCACATTCACAGAAAAATAAA
AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAG
CCATAAAAATGGCGTTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCA
ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGGCTCGCCTCGCCCGCCCGCTCGTTTC
GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGATTGCAG
TAGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCACCCCACT
AGCCGACTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCAATCCCAATCAAAGATCGGACCGGACCAAGGGTTCAGGCAGCACATGA
CAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCAGAGCATCCCGG
AGAACCTGACCGG
Found at i:25161 original size:26 final size:26
Alignment explanation
Indices: 25125--25177 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25115 GTTGACTTAG
*
25125 GCATACGGAGTTCAATCCCAATCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
* *
25151 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
25177 G
1 G
25178 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAATCTAA
Found at i:26062 original size:26 final size:26
Alignment explanation
Indices: 26026--26081 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
26016 TGTGTTGACT
*
26026 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTAATTCCCAGTC
26052 TAAGCATACGGAGTTAATTCCCAGTC
1 TAAGCATACGGAGTTAATTCCCAGTC
26078 TAAG
1 TAAG
26082 ATCAGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTAATTCCCAGTC
Found at i:26188 original size:904 final size:901
Alignment explanation
Indices: 23368--29154 Score: 7452
Period size: 900 Copynumber: 6.5 Consensus size: 901
23358 GTTGACTTAG
* * * * *****
23368 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCCACGGATTGAAATGGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA-GGGTTGCGGCAGCACATGCTGG
* * **
23433 GCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATCGTCGGAG
* * * * * *
23498 AACCTGATTGATGGCATTGGGATTCCAGCGATCAGGGGGGTCTGGGGGTGTGCGCACATGATGTG
129 AACCTGACTGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
23563 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
23628 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
23693 GGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * ** * *
23758 TACATTTCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAA-TGCCTTTCAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAA
** * * * *
23822 AATTAAAAAAAAATCCCAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
452 AATT-TTAAAAAATCCAAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
23887 TTGCCATGAAAC-TCAACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATG
516 TTGCCATGAAACTTC-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
23951 GCATTGGCATGCAGAAATATGAAAATGTACCCAAACCCACCTGCCACCCTATCGTTCCACGGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
24016 GCGCTTCCCGCCTCTCTAGACGACGTAGTGCCCGCCCGCCCGCCCGCCTGTCTGCTCGTTTTGTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCC---C-GCTCGTTTCGTC
* * * ** ** ** *
24081 GGTTGGCTTAGGCATACGGAGTTCATTTCCATTCTAGGATCAGACCAGACTGATTGTTGTGGTAG
706 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAG
* * * * *
24146 CAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCAGCCCGCCCCTCTGGC
771 CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGC
** * * *
24211 CGGCTGAATGCCCACACGCTCATTTCGT-TGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T
836 CGGCTGAGCGCCCGCACGCTCGTTTCGTGT-GTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
24273 --
900 AA
*
24273 -C-TA---AG---A-T--C-G-----GAT-----CGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
24316 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCA-CTGGGGCACCATCGTTGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCG-TCGAGCATCGTCGGAG
* * * * * * *
24380 AACCTGATTGATGGCATTAGGATTCCAGCGATCGGGGGGGC-GGGGGTGTGCGCACATGATGTGT
129 AACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
24444 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
** *
24509 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGCGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
24574 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
24639 GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** * * *
24703 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTGTCTTG
454 TTTTAAAAAATCCAAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
24768 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
24833 TGGCAACCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** *
24898 ATCCCGTCTCTCTGGCCGATGTAGTGCTCGCCTACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCT
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* *
24963 TAGGCATATGGAGTTCATTCCCAGTATAAGATCAGACTGGA-TCGAGGGTTGC-GACAGCAGGAT
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTTGCAG-CAGCAGGAT
* *** * **
25026 CGACAGCACGTAGAGGGGGACCCGGTAGATCCCCGGCTTACGCATCTCGCCTTTCTGGCCGGCTG
777 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTG
** * *
25091 AGCGCCAACACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCAATCCCAATCTAA
842 AGCGCCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
25151 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
25216 CTCGGCCATGCGATGGTGCCGCATTTTTCCTT-GTCGGGGCACCATCGCCGGAGCATTGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTT-CTTCATCGGGGCACCATCGTC-GAGCATCGTCGGAG
* * *
25280 AACCTGACTGACGACATTGTGGTTCCGGCGATCGGGGGGCCGGGGGGTTGTGCGCACATGATGTA
129 AACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTG
25345 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
25410 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
25475 GGGGACATTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 GGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
25540 GTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCAAAAACTCATTCCTAAAT
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
25605 AATTTTAAGAAATTCAAAACCGTAAAAACTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCAAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
25670 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTATAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
25735 ATTGGCATGTAGAAATATGAAGATGTGCCAAAACCCATCTACCACCCTATCGACCCACGGCTTGT
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
25800 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCGCGCTCGTTTCGTCGGTTGG
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** * * * *
25865 CTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATGGGACTAGACTGAGGGTTGCGGTAGTAGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCAGGAT
* * * *** * ** * * *
25930 CGATAGCATGCAGAGGGGGAACCGGTTGATCCCCGGTTTATGCGTCTTGCCCCTCTAGCCGGCTG
777 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTG
* * *
25995 AGTGCCCGCACGCTCCTTTCGTGTGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
26055 GCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
26120 CTCGAGAATGTGCTGCTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCAAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCG-AGCATCGTCGGAGA
* ** *
26185 ACCTGA-TGGGCGGCATTGGGGTTCCGATGATCGAGGGGGCCGGGGGGGTGTGTGCACATGATGT
130 ACCTGACT-GACGGCATTGGGGTTCCGGCGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
26249 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
26314 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATGAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
26379 TGGGGACAC-TTTTTCAAATGATCACAAAATCTTGTACACTTCGCGTTTTTAGAC-GAAATTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-CTGAATTTTTT
* *
26442 TGTGCATGCCGAC-AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
26506 TAATTTTAAAAAATCCAAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTC
451 AAATTTTAAAAAATCCAAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
26571 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCGTAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
26636 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATTCACAGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
26701 CGCATCCCATCTCTCTGGCCGACGTAGTGCTCACCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * **
26766 GCTTAGGCATATGTAGTTCATTCCCAATCTAAGATCGGACTGGGCTGAGGGTTGCAGCAGCAACA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCAGGA
* * * * ***
26831 TCGATAGCATGCAGAGGGGGACCCAACCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGTAAGCT
776 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCT
* * * * *
26896 GATCG-CTGACACGTTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GAGCGCCCG-CACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
26957 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGGCAGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
27022 GTCGGGCTTGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCA---TC--G---C-T-AGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCGTCGGAGAA
* *
27077 CCTGACCGACGGCATTGGGGTTCCGGCGATCAAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 CCTGACTGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
27142 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT--CA-
* * **
27207 CCCATACCCCCTGAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAACAGCCATTAAAGTGTCT
257 --C--ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
27272 GAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG
318 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
27337 TTTTGTGGATGCCAACAAAAATACAAGGATGATGTCTACCAAGTTTGGGTCCAAAACTTCTTTCG
383 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
27402 AAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAG
448 AAAAAATTTTAAAAAATC-CAAAACCGTAAAAAG-TTTCGAAAATCGTGAAAAATAGAAAACGAG
*
27465 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAA
511 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *** * * *
27530 AATGGCATTGCCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATGTCGATCCATG
576 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
27595 GCTTGTGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCTCGCCCGCCCACCCAG-TCGTTTCGT
641 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCC-GCTCGTTTCGT
* *
27659 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCAGTA
705 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCA
* * * * * * * * *
27724 GCAAGATTGGCAGCATGCA-AGGGGGACCCGGCTGATCCTCGGCTTGCGCATCCCGCCCCGCTGG
770 GCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGG
* * * * * * * *
27788 CCGACTGAGCACCTGCACACTAGTTTTGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
835 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
27853 AA
900 AA
* * * *
27855 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
27920 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCATTGGAGCACCATCGTCTGAGCATCG-CTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATCGTC-GGAG
* * *
27984 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGT-T
129 AACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
28048 GATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
28113 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTCAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
28178 GTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
28243 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAATCCTTTCAAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** ** * * * *
28308 TTTTAAAAAATCCTGAACCACAAAAAGTTTCGTAAATCATGAAAAATAGAAAACAAGTTGTCTTG
454 TTTTAAAAAATCCAAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
28373 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
28438 TGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
28503 ATCCCATCTTTCTGGCCGGCGTAGTGCCCACCCGCTCGTCCGCCCGCTAC-TTTCGTCGGTAGGC
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCT-CGTTTCGTCGGTTGGC
* *
28567 TTAGGCATACGGAGCTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGAT-
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCAGGATC
* * * * * * * * *
28631 TAGTAGCACGCAAAGAGAGACCCGACCGATCCCCAGCTTGCTCATCTCG-CCCTATGGCCGGTTG
778 GA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTG
* * * * *
28695 AACACTCGCACGCTCGTCTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
28755 GCATACGGAGTTCATTCCCAGTCAAAGATCAGATCAGACCGAGGGTTGTGGCAGTACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
28820 CTCGGGCATGTGCTGGTGCCGCATTTTTCTT--TGCTTGGGCACCA---T----CA-C-T-GGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAT-C-GGGGCACCATCGTCGAGCATCGTCGGAG
* * * * * *
28873 AACCTGACCGACGGTATTGGGGTTTCGACGATCGGGGGGGCCGGGGGATGTACGCACATGATGTG
129 AACCTGACTGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
28938 CGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
29003 ACCCCCTT-AAGAAGCATTTGAGATTTTATAGGCTTGCTGCTAGTAGCAATTAAATTGTCTGAAA
258 ACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
29067 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
29132 GTGCATGCCAACAAAAATACAAG
387 GTGCATGCCAACAAAAATACAAG
29155 CCTGCCCGCC
Statistics
Matches: 4293, Mismatches: 500, Indels: 192
0.86 0.10 0.04
Matches are distributed among these distances:
873 2 0.00
874 166 0.04
875 2 0.00
876 1 0.00
878 208 0.05
879 54 0.01
880 217 0.05
881 8 0.00
882 105 0.02
883 10 0.00
886 1 0.00
887 1 0.00
888 3 0.00
889 35 0.01
890 112 0.03
891 237 0.06
892 5 0.00
893 1 0.00
894 1 0.00
895 4 0.00
896 2 0.00
897 69 0.02
898 244 0.06
899 350 0.08
900 735 0.17
901 42 0.01
902 679 0.16
903 135 0.03
904 577 0.13
905 157 0.04
906 6 0.00
907 60 0.01
908 28 0.01
909 36 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCGTCGGAGAA
CCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCAAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCAGGATCGAC
AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:26960 original size:26 final size:26
Alignment explanation
Indices: 26931--26983 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26921 GTTGACTTAG
26931 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26957 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26983 G
1 G
26984 ATTAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27858 original size:26 final size:26
Alignment explanation
Indices: 27829--27881 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
27819 GTTGACTTAG
27829 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
27855 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
27881 G
1 G
27882 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:29747 original size:637 final size:626
Alignment explanation
Indices: 28543--29791 Score: 1652
Period size: 626 Copynumber: 2.0 Consensus size: 626
28533 CCCGCTCGTC
* * *
28543 CGCCCGCTACTTTCGTCGGTAGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCAGACTGG
1 CGCCCGCTACTTTCGTCGGTAGGCTTAGGCATACGGAGCTCATTCCCAGCCTAAGATCAAACAGG
* * * *
28608 ACCGAGGGTTGCAGCAGCAGGATTAGTAGCACGCAAAGAGAGACCCGACCGATCCCCAGCTTGCT
66 ACCGAGGGTTGCAGCAGCAGGATGAGCAGCACGCAAAGAGAGACCCGACCGATCCCCAGCTTACG
* ** * * **
28673 CATCTCGCCCTATGGCCGGTTGAACACTCGCACGCTCGTCTCGTGGGTTGACTTAGGCATACGGA
131 CATCCCGCCCTATGGCCGACTGAACACTCGCACGCTCGTCTCGCGGGTTGACTTACGCATAAAGA
* *
28738 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCAGACCGAGGGTTG
196 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAGACCAAGGGTTG
* * * * * * *
28803 TGGCAGTACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCTTGGGCACCATCAC
261 CGACAGCACATGCTAGGCCCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCAC
* *
28868 TGGAGAACCTGACCGACGGTATTGGGGTTTCGACGATCGGGGGGGCCGGGGGATGTACGCACATG
326 TGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGAGGGGCCGGGGGATGTACGCACATG
28933 ATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
391 ATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
28998 CTCGCACCCCCTTAAGAAGCATTTGAGATTTTATAGGCTTGCTGCTAGTAGCAATTAAATTGTCT
456 CTCACACCCCCTTAAGAAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCAATTAAAGTGTCT
*
29063 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTT
521 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGACTTTTTAGCTGAATTT
29128 TTTTGTGCATGCCAACAAAAA-TACAAGCCTGCCCGCCCGCT
586 TTTTGTGCATGCCAA-AAAAAGTACAAGCCTGCCCGCCCGCT
* *
29169 CGCCCGCT-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAAACAG
1 CGCCCGCTAC-TTTCGTCGGTAGGCTTAGGCATACGGAGCTCATTCCCAGCCTAAGATCAAACAG
* * * * * * * * *
29233 GATCGATGGTTGC-GACAGTAGGATCGA-CAGCATGTAGAGGGGGACCTGACCGATCCCC-GACT
65 GACCGAGGGTTGCAG-CAGCAGGAT-GAGCAGCACGCAAAGAGAGACCCGACCGATCCCCAG-CT
* *** * * *
29295 TACGCATCCCGCCCTCTGGCCGACTGAGTGC-CGGTACGCTGGTTTCGCGGGTTGACTTACGCAT
127 TACGCATCCCGCCCTATGGCCGACTGAACACTC-GCACGCTCGTCTCGCGGGTTGACTTACGCAT
* * * * *
29359 AAAGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCCGACCAAG
191 AAAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAGACCAAG
* * *
29424 GGTTGCGATAGCACATGTTGGGCCCAGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCAC
256 GGTTGCGACAGCACATGCTAGGCCCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCA-
* *
29488 CATCATCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGG-TTCTGGCGATCGGAGGGGCC
319 C--CAT-----CA-C-T-GGAGAACCTGACCGACGGCATTGGGGTTTC-GACGATCGGAGGGGCC
* * *
29552 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
373 GGGGGATGTACGCACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
29617 CTCATCAAACCTTGAGAACTCACACCCCCTTGAAG-AGCATTTGAGATTTTACAGGTTTGCTGCC
438 CTCATCAAACCTCGAGAACTCACACCCCCTT-AAGAAGCATTTGAGATTTTACAGGCTTGCTGCC
* * * *
29681 AGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTT
502 AGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTT
29746 CGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAGTACAAG
567 CGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAGTACAAG
29792 GATCATGTCT
Statistics
Matches: 536, Mismatches: 67, Indels: 29
0.85 0.11 0.05
Matches are distributed among these distances:
625 5 0.01
626 257 0.48
627 2 0.00
629 3 0.01
634 2 0.00
635 1 0.00
636 9 0.02
637 254 0.47
638 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.26
Consensus pattern (626 bp):
CGCCCGCTACTTTCGTCGGTAGGCTTAGGCATACGGAGCTCATTCCCAGCCTAAGATCAAACAGG
ACCGAGGGTTGCAGCAGCAGGATGAGCAGCACGCAAAGAGAGACCCGACCGATCCCCAGCTTACG
CATCCCGCCCTATGGCCGACTGAACACTCGCACGCTCGTCTCGCGGGTTGACTTACGCATAAAGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAGACCAAGGGTTG
CGACAGCACATGCTAGGCCCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCAC
TGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGAGGGGCCGGGGGATGTACGCACATG
ATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAGAAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCAATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGACTTTTTAGCTGAATTT
TTTTGTGCATGCCAAAAAAAGTACAAGCCTGCCCGCCCGCT
Found at i:30279 original size:26 final size:26
Alignment explanation
Indices: 30250--30302 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
30240 GTTGACTTAG
30250 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30276 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30302 G
1 G
30303 ATCAGATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30982 original size:893 final size:892
Alignment explanation
Indices: 29162--31051 Score: 2827
Period size: 893 Copynumber: 2.1 Consensus size: 892
29152 AAGCCTGCCC
* *
29162 GCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATC
1 GCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
29227 AAACAGGATCGATGGTTGCGACAGTAGGATCGACAGCATGTAGAGGGGGACCTGACCGATCCCCG
65 GAATAGGATCGAGGGTTGCGACAGCAGGATCGATAGCATGTAGAGGGGGACCAGACCGATCCCCC
* * * *
29292 ACTTACGCATCCCGCCCTCTGGCCGACTGAGTGCCGGTACGCTGGTTTCGCGGGTTGACTTACGC
130 ACTTACGCATCCCGCCCTCTGGCCGACTGAGCGCCAGTACGCTCGTTTCGCGAGTTGACTTACGC
* * * *
29357 ATAAAGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCCGACCA
195 ATAAAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACACGACCA
* * * * *
29422 AGGGTTGCGATAGCACATGTTGGGCCCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
260 AGGGTTGCGACAGCACATGCTAGGCCCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCA
* * * * *
29487 CCATCATCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGAGGGGCC
325 CCATCACCGGAGCATCA-CGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGAGGGGCC
29552 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
389 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
29617 CTCATCAAACCTTGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
454 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
29682 GTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
519 GTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATCGTCACAAAATCTTGTAAACTTC
* * *
29747 GACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAGTACAAGGATCATGTCTACCAAGTTTG
584 GACTTTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTG
* *
29812 GGGATAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTG
649 GGGACAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATG
*
29877 AAAAATAGAAAATGAGTCCTCTTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTATGA
714 AAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTATGA
* * *
29942 ATTTACAAGCCATAAAAATAGCATTGGAATGTAGAAATATGAAGATGTGCCTAAACCCACATACC
779 ATTTACAAGCCATAAAAATAGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCAACATACC
* * * *
30007 ACCCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGGCCGGTGTAGT
844 ACCCTATCGATCCACAGCTTACGCATCCCATCTCTCTGGCCGATGTAGT
* * *
30056 GCCCGCCCGGCCGTTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATT
1 GCCCGCCC-GCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
30121 GGATTGGATTGAGGGTTGCAACAGCAGGATCGATAGCATGTAGAGGGGGACCAGGCCGATCCCCC
65 GAATAGGATCGAGGGTTGCGACAGCAGGATCGATAGCATGTAGAGGGGGACCAGACCGATCCCCC
* * * * *
30186 TCTTGCGCATCCCGCCCTTCTGGCCGACTGAGCGCCAGTACGCTCGTTTTGTGAGTTGACTTAGG
130 ACTTACGCATCCCGCCC-TCTGGCCGACTGAGCGCCAGTACGCTCGTTTCGCGAGTTGACTTACG
** * *
30251 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATATGACC
194 CATAAAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACACGACC
* * * * *
30316 GAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGTTGGTGCCGTATTTTTCTTCATCATGGC
259 AAGGGTTGCGACAGCACATGCTAGGCCCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGC
* *
30381 ACCATCGCCGGAGCATGC-CGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGC
324 ACCATCACCGGAGCAT-CACGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGAGGGGC
30445 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-
388 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
30509 TCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
453 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
30574 AGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATCGTCACAAAATCTTGTAAACTT
518 AGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATCGTCACAAAATCTTGTAAACTT
* * *
30639 TGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTT
583 CGACTTTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTT
* * * *
30704 GGGG-CAAATCTCAC-TCCAAAAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTTGAAAATCA
648 GGGGACAAAACTC-CTTCCAAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCA
* * *
30767 TG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTCAAGGCTTAAGGGACCATTGTAT
712 TGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTAT
* * *
30831 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCAACCTA
777 GAATTTACAAGCCATAAAAATAGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCAACATA
* * * *
30896 CCATCGTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGTCGATGTAGT
842 CCACCCTATCGATCCACAGCTTACGCATCCCATCTCTCTGGCCGATGTAGT
* * *
30947 GCCTCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTACCAGTTTAAGA
1 G---CCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
31012 TCGAATCGGATCGAGGGTTACGGCAGCAGGATCGGTAGCA
63 TCGAATAGGATCGAGGGTTGCGACAGCAGGATCGATAGCA
31052 CGCACGCTCA
Statistics
Matches: 890, Mismatches: 99, Indels: 15
0.89 0.10 0.01
Matches are distributed among these distances:
891 161 0.18
892 53 0.06
893 270 0.30
894 238 0.27
895 167 0.19
896 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
AATAGGATCGAGGGTTGCGACAGCAGGATCGATAGCATGTAGAGGGGGACCAGACCGATCCCCCA
CTTACGCATCCCGCCCTCTGGCCGACTGAGCGCCAGTACGCTCGTTTCGCGAGTTGACTTACGCA
TAAAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACACGACCAA
GGGTTGCGACAGCACATGCTAGGCCCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCAC
CATCACCGGAGCATCACGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGAGGGGCCGG
GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATCGTCACAAAATCTTGTAAACTTCGA
CTTTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGG
GACAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAA
AAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTATGAAT
TTACAAGCCATAAAAATAGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCAACATACCAC
CCTATCGATCCACAGCTTACGCATCCCATCTCTCTGGCCGATGTAGT
Found at i:33713 original size:26 final size:26
Alignment explanation
Indices: 33684--33736 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33674 GTTGACTTAG
33684 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
33710 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33736 G
1 G
33737 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34721 original size:903 final size:898
Alignment explanation
Indices: 31210--37514 Score: 7970
Period size: 900 Copynumber: 7.1 Consensus size: 898
31200 TTCGTCGGGA
* * * *
31210 CATTGAGGTTCTGGCGATCG-GGGTGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
1 CATTGGGGTTCCGACGATCGAGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
31274 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
65 TACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
* * *
31339 GCATTTGAGATTTTACAGGCTTACTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTT
130 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTT
* * * * *
31403 TCCAAATGGACACAAAATCTTGTCCACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATA
195 T-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACA
* * * * *
31468 AAAATACGAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
259 AAAATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
31533 -CTCGAACCGCAAAAAGTTTTGAAAATCAG-GAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
324 CCT-GAACCGCAAAATGTTTTGAAAATC-GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
31596 TTCACGTGAAGGCTTAAGAGACCATTATATGAATTTACAAGCCATAAAAATTGCATTGGCATGCA
387 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * * *
31661 GAAAGATGAAGATGTGGCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCGTCT
452 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCT
* * * * ** * *
31726 CTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCACCCACTCGTTTTTTGGGTTAGCTTAGGCATAC
517 CTCTGGCCGGCGTAGT----GCCCGACCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * ** * * * *
31791 GGAGTTCATTCCCAATCTAAGATTAGAACAGATTGAGGGTTGCGGCT-GCAAGATCAGCAACACG
578 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGG-TAGCAGGATCGGCAGCACG
* * * * * *
31855 TAGAAGGGGACCCGATCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
642 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT-CCACCCCTCTGGCCGGTTGAGCGCCCGCA
* * * *
31920 CGTTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCGTTCCCAGTCTAAG-AT-C--AG-----
706 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
31976 ----A--C-----T-GGA-C----CGAGGGTTGTGGCAGCACATGCTGGGGTTGGGCATGTGCTG
771 TCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * **
32024 GTGCCGTATTTTTCTTCGTCGGGGCTCCATCGTCGGAGCA-TCGCTGGAGAACCTGACCGGCGG
836 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTATC-GGAGAACCTGACCGGCGG
* * ** *
32087 CATTGGGGTTCTGGCGATCGAGGGGGCCAAGGGATGTGCGCACATGATGTGCGATGGGTGCTGGT
1 CATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
32152 ACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
* *
32217 CATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTT
* **
32282 CAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGCATTTTTTTGTGCATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAA
* * * *
32347 AATACAAGGATCACGTCTACCAAGTTTCGGGAAAAAACTCCTTCCGAAAAAATTTTAAAAAAACC
261 AATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTT-AAAAAATC
* * ** ** * *
32412 CT-AACCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTC
325 CTGAACCGCAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * ** * *
32476 ACGTCAAGGCTTAAAGGACCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCACGTAGAA
390 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* *
32541 ATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
455 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTC
* *
32606 TGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATTGGTTGGCTTAGGCATACGGA
520 TGGCCGGCGTAGTGCCCGACCG----CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * * ** *
32671 GTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGA
581 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGA
* * * * * * * * *
32736 GGGGGACCCTA-CTAATCCTCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGTACGC
646 GGGGGACCCGATC-GATCCCCGGCTTGCGCAT-CCACCCCTCTGGCCGGTTGAGCGCCCGCACGC
32800 TCGTTTCGTGGGTTGACTTAGGCATAC--AG---------AG--T-----T-C--A-TTC--T--
709 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
**
32839 CAGTCTAAGATCGGACCGGATCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
774 CAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
32904 CCGCATTTTTCTTTGTTGGGG------CG-C--ATCA-T-T-GGAGAACCTTACCGGCGG
839 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTATCGGAGAACCTGACCGGCGG
*
32952 CATTGGGGTTCCGACGAT--AGGGGGCCGGGGGGATGTGCGCACATGATGTGAGATGGGTGCTGG
1 CATTGGGGTTCCGACGATCGAGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGG
* *
33015 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAA
65 TACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
* * * *
33080 GCATTTGAGATTTTACAAGTTTGCTACCAGTAGCGATTAAAGTGTCTGAAATGGGGATACCTTTT
130 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTT
* *
33145 TCAAATGGTCACAAACTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
195 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAA
* *
33210 AAATACAAGGATCACGTCCACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAAATTTAAAAAATC
260 AAATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* *
33275 CTGAACCGCATAATGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
325 CTGAACCGCAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
33340 AAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCAT-AAAATGGCATTGGCATGCAGAA
390 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* *
33404 ATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGGTTGTGCATCCCGTCTCTC
455 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTC
* * *
33469 TGGCCGGCGTAGTGCCCGCCCAACCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAA
520 TGGCCGGCGTAGTGCCCG----ACCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * * * *
33534 GTTCATTCCCATTCTAAGATCAGATCAGACCAAGGGTTACAGTAGCAGGATTGGCAGCACACAGA
581 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGA
* * * * * * *
33599 GGGGGACCC-AGTCGATCGCCAGCTTGCGCATCCTGCCCCTCTGCCCAGCTGAGCGCCCGTACGC
646 GGGGGACCCGA-TCGATCCCCGGCTTGCGCATCC-ACCCCTCTGGCCGGTTGAGCGCCCGCACGC
* * *
33663 TCGTTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
709 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
33728 CAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTA
774 CAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
33793 CCGTATTTTTTTTCGCCGGGGCACCATCGTCGGAGAATTATCGGAGAACCTGACCGGCGG
839 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTATCGGAGAACCTGACCGGCGG
* * *
33853 CATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGTGTGCGCACTTGATGTACGATGGGTGCTGGT
1 CATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
33918 ACTTGGCCCTTATATTGGCCCTCTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
* * *
33983 CATTTGAAATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTT
* * *
34048 CAAATGGTCACAAACTCTTGTACAGTTCGAGTTTTTAGCTAAATTTTTTTTTGCATGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAA
*
34113 AATACAAGGATCACGTCCACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
261 AATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* *
34178 TGAACCGCATAATGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
326 TGAACCGCAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
34243 AGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAGAAA
391 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
34308 TATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGGTTGTGCATCCCGTCTCTCT
456 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT
* *
34373 GGCCGGCGTAGCGCCTGCCCGACCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAC
521 GGCCGGCGTA--G--TGCCCGACCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
** * * * * * ** *
34438 TTCATTCCCAGTCTAAGATTGGATCGGGCTGAGAGTTGTGGCAGCAGGATCGGCAGCACGCAGAG
582 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAG
* * * * * * *
34503 GGGGACCCGACCGATCCCCGGCTTGCGCATGTCACCCCTCTGGCTGGCTAAGCGCCCGTATGCTC
647 GGGGACCCGATCGATCCCCGGCTTGCGCAT-CCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTC
* * * *
34568 ATTTCGTGGGTTGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCA
711 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
34633 GTCTAAGATCGGACC-GAACTGAGGGTTGCAGTAACACATGCTGGGCTCGGGCATGTGCTGGTGC
776 GTCTAAGATCGGACCGGATC-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* ** * ** * **
34697 CGCATTTCTCTTCCCCGGGGCACCATCGTTGGAGCATCGTCGGAGAACTTGACCGGTAG
840 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTATCGGAGAACCTGACCGGCGG
* * * * ***
34756 CATTAGGCTTTCGGCGATCG-GGGGGCCGGGGGG-GTGCGCACATGATGTGCGATGGGTGCCAAT
1 CATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
34819 ACTTGGCCCCTATATTTGCCCCCTATCCATCATGAAACCTCGAGAACTCACA-CCCCTTAAAGAG
66 ACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
**
34883 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTT
131 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTT
* * *
34948 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCAGGCCAACAAA
196 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAA
* * * *
35013 ATTATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
261 AATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
35078 CGAACCACAAAATGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCA
326 TGAACCGCAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
35143 CGTGAAAGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCATGCAGAAA
391 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * *
35208 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCATCCTGTCTCTTT
456 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT
* * **** * *
35273 GGCCGACGTAGTGCCCGCCCGCCCGCTTATTCGTTTCATAGGTTGGCTCAGGCATACGGAGTTCA
521 GGCCGGCGTAGTGCCCGACCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * ** * * **
35338 TTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGTGGCAGCAGGATCAGCCA-CACATAGAGGGG
586 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATC-GGCAGCACGCAGAGGGG
* * * * * * * *
35402 GACCCGATCGATCCCTGACATGCGCATCCCGCCCCTCTGGCCGGTTGACCACCAGCACGATCGTT
650 GACCCGATCGATCCCCGGCTTGCGCAT-CCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTT
* * *
35467 TCGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
714 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * ** * *
35532 TAAGATCGGACTGGATCGAGGGTTGCGACAGCACATGCTGGGCTCGACCATGTGTTGGTGCTGCA
779 TAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * *
35597 TTTTTCTTCATCGGGGCACCATCGCCGGAGCA-TAGTCGGAGAACCTGATCGGCGG
844 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTA-TCGGAGAACCTGACCGGCGG
35652 CATTGGGGTTCCGACGATCG-GGGGGTCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
1 CATTGGGGTTCCGACGATCGAGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * ** *
35716 GTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGTGCTCACACCCCCGTAAAG
64 GTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAG
* * *
35781 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGAACACTTTT
129 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTT
**
35846 TTCAAATGGTCACAAAATCTCATACACTTCGAGTCTTTT-GCTGAAA-TTTTTTGTGCATGCCAA
194 TTCAAATGGTCACAAAATCTTGTACACTTCGAGT-TTTTAGCT-AAATTTTTTTGTGCATGCCAA
* * *
35909 AAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
257 CAAAAATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAA
* *
35974 AT-CTCGAACCGCAAAAAGTTTTGAAAACCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
322 ATCCT-GAACCGCAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
36038 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
386 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
36103 AGAAATACGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
451 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
* * * *
36168 TCTTTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGA
516 TCTCTGGCCGGCGTAGTGCCCGACCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * ** * *
36233 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGATAGCAGGATCGATAGCATGTAGA
581 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGA
* * * *
36298 GGGGGACTCGGTCGATCCCTGGCTTGCGCATCCATCCCCTCTGGCCGGTTGAGCGCCCGCACGTT
646 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCA-CCCCTCTGGCCGGTTGAGCGCCCGCACGCT
* * * * *
36363 CATTTTC-TGGGTTGACTTAGGCATACCGAGTTCATTCCTAGTCTAAGCATACGAATTTCATTCC
710 C-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* *
36427 CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
774 CAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * *
36492 CCACATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCA-CCGAGAACCTGACTGACGG
839 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTATCGGAGAACCTGACCGGCGG
* * *
36551 CATTGGGTTTTCGACGATCTGA-GGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
1 CATTGGGGTTCCGACGATC-GAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* ** *
36615 TACCTGGCCCTTATATTATCCCCCTATGCC-TCATCAAA-CTTGGAGAACTCATACCCCCTTAAA
65 TACTTGGCCCTTATATTGGCCCCCTAT-CCATCATCAAACCTT-GAGAACTCACACCCCCTTAAA
* *
36678 GAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACA-GTA
128 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCT-
* * * * *
36742 TTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCT-GATTTTTTTATACATGCCAA
192 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA
* * * *
36806 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGAAAAAACTCCTTCCAAAAAAATTTTAAAAA
257 CAAAAATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAA
* ** * * * *
36871 AT-CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGTGTTGTTTTGCCATGAAA
322 ATCCT-GAACCGCAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
36935 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
386 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
37000 AGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGACTTGCGCATCCCGTC
451 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
* * * * * *
37065 TCTCTGGCCGACATAATG--C--CCGCCCGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATACGGA
516 TCTCTGGCCGGCGTAGTGCCCGACCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* ** *
37126 GTTCATTCCAAGTCTAATTTCAGACCGGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGA
581 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGA
* * * * * * *
37191 GGGGCACCCAACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCTGATTGAGCGCCCGCACACT
646 GGGGGACCCGATCGATCCCCGGCTTGCGCAT-CCACCCCTCTGGCCGGTTGAGCGCCCGCACGCT
* *
37256 CGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCT
710 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *
37321 AGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGC
775 AGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * *
37386 TC-CATTTTTCTTCGTCGGGGCA-CATCGCCGGAGCATTGTCGGAGAACTTGACCGACGG
840 -CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTATCGGAGAACCTGACCGGCGG
** * *
37444 CATTGGGGTTCCGGTGATC-AGGGGGCCGGGGGAGGTGTGCGCACACGATGTGTGATGGGTGCTG
1 CATTGGGGTTCCGACGATCGAGGGGGCC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTG
37508 GTACTTG
64 GTACTTG
37515 ACCCGACTGA
Statistics
Matches: 4770, Mismatches: 544, Indels: 211
0.86 0.10 0.04
Matches are distributed among these distances:
860 3 0.00
862 3 0.00
863 282 0.06
864 358 0.08
865 35 0.01
866 3 0.00
867 3 0.00
868 4 0.00
870 1 0.00
871 3 0.00
872 3 0.00
873 9 0.00
874 2 0.00
875 2 0.00
876 2 0.00
877 685 0.14
878 14 0.00
879 2 0.00
881 1 0.00
884 1 0.00
885 3 0.00
887 1 0.00
889 75 0.02
891 1 0.00
892 22 0.00
893 309 0.06
894 39 0.01
895 3 0.00
896 321 0.07
897 284 0.06
898 186 0.04
899 112 0.02
900 1045 0.22
901 118 0.02
902 397 0.08
903 429 0.09
904 2 0.00
905 1 0.00
907 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (898 bp):
CATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
TGAACCGCAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT
GGCCGGCGTAGTGCCCGACCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGG
ACCCGATCGATCCCCGGCTTGCGCATCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
TTTCTTCGTCGGGGCACCATCGTCGGAGCATTATCGGAGAACCTGACCGGCGG
Found at i:37313 original size:26 final size:26
Alignment explanation
Indices: 37277--37328 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
37267 TTGACTTAGC
37277 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
37303 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
37329 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:37625 original size:26 final size:26
Alignment explanation
Indices: 37595--37647 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
37585 GTTGACTTTG
37595 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
37621 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
37647 G
1 G
37648 ATGGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:40384 original size:17 final size:16
Alignment explanation
Indices: 40355--40404 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
40345 TAGTTTTTAT
40355 TAATTATAAATTAATTGA
1 TAATTA-AAATTAATT-A
40373 TAATTAAAATT-ATT-
1 TAATTAAAATTAATTA
40387 TAATT-AAATTAATTA
1 TAATTAAAATTAATTA
40402 TAA
1 TAA
40405 CTGTATAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 3 0.10
16 3 0.10
17 5 0.17
18 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
TAATTAAAATTAATTA
Found at i:41628 original size:16 final size:18
Alignment explanation
Indices: 41602--41642 Score: 59
Period size: 16 Copynumber: 2.4 Consensus size: 18
41592 TCACATAACA
*
41602 AATAGTTTATTTTT-ATT
1 AATAATTTATTTTTAATT
41619 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
41636 AATAATT
1 AATAATT
41643 AATAACTGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 12 0.57
17 3 0.14
18 6 0.29
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:41985 original size:936 final size:911
Alignment explanation
Indices: 40373--42222 Score: 2963
Period size: 936 Copynumber: 2.0 Consensus size: 911
40363 AATTAATTGA
*
40373 TAATTAAAATTATTTAATTAAATTAATTATAACTGTATAGATTATAACTAAGAATTTAATATTCT
1 TAATTAAAATTATTTAATTAAATTAATTATAACTGCATAGATTATAACTAAGAATTTAATATTCT
40438 TATTTAATTATTATTATATATATTTTATTAGATAATTAAATTTATTTATGATAAATTAGATAATA
66 TATTTAATTATTATTATATATATTTTATTAGATAATTAAATTTATTTATGATAAATTAGATAATA
* * **
40503 GTAGATATAAGATCTCAGGACAAATTTAAAGCTTTTATTCATAATATAATTATTAATTTTTATGA
131 GTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTATTCAAAATATAATTATTAATTTACATGA
* * *
40568 TTTATATTACTTTTTAATTATTTATTAATTAGGAATAAATTTATTGGATTGCTTATAAATTTATA
196 TTTATATTAATTTTTAATTATTTATTAATTAGGAATAAATTTATTGGATAGCGTATAAATTTATA
*
40633 TAATTACGTAATATAATTATATCACATAACAAATAGTTTATTTTTTATTATAATTTGTTTTTAAT
261 TAATTACGTAATATAATTATATCACATAACAAATAGTTTATTTTTTATTATAATTTATTTTTAAT
*
40698 TAATAATTAATAATTGTGTTAATTGTAGCTATTTTGTTAAATATATATATTATTTGATTTATTAA
326 TAATAATTAATAACTGTGTTAATTGTAGCTATTTTGTTAAATATATATATTATTTGATTTATTAA
*
40763 GTAGCTAATTAAAAATTATTTATAACAATAAATATAGTTATGTCAATGCATTAAATATTCATAAC
391 GTAGCTAATTAAAAATTATTTATAACAATAAATATAGTTATGTCAATACATTAAATATTCATAAC
40828 TATTTGAATATTATTCTAATTTAAGTTTCAATTTGTTTAATTTTAAATAACAAGATACTAACATT
456 TATTTGAATATTATTCTAATTTAAGTTTCAATTTGTTTAATTTTAAATAACAAGATACTAACATT
40893 TGAAATTTCAAAAAATTCCATCATTGGATAATTATTATTTATTCTCAACATCCTTACAGCACCTA
521 TGAAATTTCAAAAAATTCCATCATTGGATAATTATTATTTATTCTCAACATCCTTACAGCACCTA
*
40958 AAAATGTATCTAATAGCAAATAAGAATGAAACACAATGAAAAATTAAAATCGTGCAATAATTGTG
586 AAAATGTATCTAAAAGCAAATAAGAATGAAACACAATGAAAAATTAAAATCGTGCAATAATTGTG
* * * * *
41023 CGAATGGTTTTTAAGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAATCATAATTATTAT
651 CGAATGATTTTTAAGCCCAAAATTGTTAAGAAACAAAATCTGACGTTTTAAATCATAATTATTAT
*
41088 CTATATGGCTTTTTTTATTTATAATAATTTTAAATAGATAATTGTTCAAATAGTAATAACTATTT
716 CTATATGCCTTTTTTTATTTATAATAATTTTAAATAGATAATTGTTCAAATAGTAATAACTATTT
* * * *
41153 -AGACCGGTTATAATTATTTAAACCGATTTGGTAAATCAATTTATTTTTTAAATCTTTTACTAAT
781 GA-AGC-GTCATAATTATTTAAACCGATTTGGTAAATAAATTTATTTTTTAAATCTCTTACTAAT
41217 TCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTCAAATAAGCTTATAAGTTGAAAATCAATTG
844 TCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTCAAATAAGCTTATAAGTTGAAAATCAATTG
41282 TTT
909 TTT
41285 TAATTAAAATTATTTAATTAAATTAATTATAACTGCATAGATTATAACTAAGAATTTAATATTCT
1 TAATTAAAATTATTTAATTAAATTAATTATAACTGCATAGATTATAACTAAGAATTTAATATTCT
*
41350 TATTTAATTATTGTTATATATATATTTTATTAGATAATTCAATTTGAATTAAATTTATTTATGAT
66 TATTTAATTATT-AT-TATATATATTTTATTAG--------A--T-AATTAAATTTATTTATGAT
41415 AAATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTATTCAAAATATAATTA
118 AAATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTATTCAAAATATAATTA
*
41480 TTAATTGGTAAACAT-ATTTAAATATTAATTTTTAAGATTTATATTAATTTTTAATTATGAATAA
183 TTAATT--T--ACATGATTT--ATATTAATTTTT-A-A-TTAT-TT-A---TTAATTAGGAATAA
* *
41544 ATTTATTTGATAGCGTATAAATTTATATAATTATGTAATATAATTATATCACATAACAAATAGTT
234 ATTTATTGGATAGCGTATAAATTTATATAATTACGTAATATAATTATATCACATAACAAATAGTT
41609 TA-TTTTTATTATAATTTATTTTTAATTAATAATTAATAACTGTGTTAATTGTAGCTATTTTGTT
299 TATTTTTTATTATAATTTATTTTTAATTAATAATTAATAACTGTGTTAATTGTAGCTATTTTGTT
*
41673 -AA-ATATATATTATTTGATTTATTAAGTAGCTAATTAAAAATTATTTATAACAATAAATATGGT
364 AAATATATATATTATTTGATTTATTAAGTAGCTAATTAAAAATTATTTATAACAATAAATATAGT
* * * * **
41736 TATGTTAATACATTCAAATATTCATAACTATTTTATTATTATTTTAATTTAAGTTTCTCTTTGTT
429 TATGTCAATACATT-AAATATTCATAACTATTTGAATATTATTCTAATTTAAGTTTCAATTTGTT
* * *
41801 TAATTTTAAATAATAAGATACTAATATTTGAAATTTCTAAAAATTCCATCATTGGATAATTATTA
493 TAATTTTAAATAACAAGATACTAACATTTGAAATTTCAAAAAATTCCATCATTGGATAATTATTA
* * * * * *
41866 TTTATTCTCAACATTCTTAGAGCATCTAAAAATGTATCTAAAAGCAAATAAGTATTAAATACAAT
558 TTTATTCTCAACATCCTTACAGCACCTAAAAATGTATCTAAAAGCAAATAAGAATGAAACACAAT
41931 GAAAAATTAAAATCGTGCAATAATTGTGCGAATGATTTTTAAGCCCAAAATTGTTAAGAAACAAA
623 GAAAAATTAAAATCGTGCAATAATTGTGCGAATGATTTTTAAGCCCAAAATTGTTAAGAAACAAA
* *
41996 ATCTGACGTTTTAAATCATAATTATTATTTATATGCCTTTTTTTATTTATAATAATTTTACATAG
688 ATCTGACGTTTTAAATCATAATTATTATCTATATGCCTTTTTTTATTTATAATAATTTTAAATAG
* *
42061 ATAATTGTTCAAATAGTAATAATTATTTGAAGTCGTCATAATTATTTAAACCGGTTTGGTAAATA
753 ATAATTGTTCAAATAGTAATAACTATTTGAAG-CGTCATAATTATTTAAACCGATTTGGTAAATA
42126 AATTTATTTTTTAAATCTCTTACTAATTCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTCAA
817 AATTTATTTTTTAAATCTCTTACTAATTCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTCAA
*
42191 ATAAGTTTATAAGTTGAAAATCAATTGTTT
882 ATAAGCTTATAAGTTGAAAATCAATTGTTT
42221 TA
1 TA
42223 TGACAAAAAG
Statistics
Matches: 861, Mismatches: 47, Indels: 36
0.91 0.05 0.04
Matches are distributed among these distances:
912 76 0.09
913 1 0.00
914 17 0.02
922 1 0.00
924 1 0.00
925 88 0.10
927 1 0.00
928 4 0.00
929 2 0.00
930 11 0.01
931 1 0.00
932 1 0.00
933 4 0.00
934 2 0.00
935 73 0.08
936 440 0.51
937 62 0.07
938 76 0.09
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.44
Consensus pattern (911 bp):
TAATTAAAATTATTTAATTAAATTAATTATAACTGCATAGATTATAACTAAGAATTTAATATTCT
TATTTAATTATTATTATATATATTTTATTAGATAATTAAATTTATTTATGATAAATTAGATAATA
GTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTATTCAAAATATAATTATTAATTTACATGA
TTTATATTAATTTTTAATTATTTATTAATTAGGAATAAATTTATTGGATAGCGTATAAATTTATA
TAATTACGTAATATAATTATATCACATAACAAATAGTTTATTTTTTATTATAATTTATTTTTAAT
TAATAATTAATAACTGTGTTAATTGTAGCTATTTTGTTAAATATATATATTATTTGATTTATTAA
GTAGCTAATTAAAAATTATTTATAACAATAAATATAGTTATGTCAATACATTAAATATTCATAAC
TATTTGAATATTATTCTAATTTAAGTTTCAATTTGTTTAATTTTAAATAACAAGATACTAACATT
TGAAATTTCAAAAAATTCCATCATTGGATAATTATTATTTATTCTCAACATCCTTACAGCACCTA
AAAATGTATCTAAAAGCAAATAAGAATGAAACACAATGAAAAATTAAAATCGTGCAATAATTGTG
CGAATGATTTTTAAGCCCAAAATTGTTAAGAAACAAAATCTGACGTTTTAAATCATAATTATTAT
CTATATGCCTTTTTTTATTTATAATAATTTTAAATAGATAATTGTTCAAATAGTAATAACTATTT
GAAGCGTCATAATTATTTAAACCGATTTGGTAAATAAATTTATTTTTTAAATCTCTTACTAATTC
TTGAAGTATTAAAAAATTAGTATTATTTTGTTTCAAATAAGCTTATAAGTTGAAAATCAATTGTT
T
Found at i:42591 original size:180 final size:179
Alignment explanation
Indices: 42385--42845 Score: 534
Period size: 180 Copynumber: 2.6 Consensus size: 179
42375 TTTTAAATCT
* *
42385 CTTATTAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTTGCATAAGCTTTTAT-ACTGA
1 CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTTTATAACTGA
* *
42449 AACAATTATTTTATGAAAAAACAAAAAGGTCATAACGATTTGAAATAGATAACTATTCAAATGGA
66 AACAATTATTTTATGACAAAAC-AAAAGGTCATAACGATTTGAAATAGATAA-TATTCAAATAGA
* * * **
42514 CATGACTGTTTGAA-CTGATTCGATAAAAAAATTAA-CTTTTTAAATCACTTAG
129 CATAACTATTTAAATCTG-TTAAATAAAAAAATTAATCTTTTTAAA-CACTT-G
* * * * *
42566 -TTATTAATTTTTGGAATATTAATAAATTACTATTATTTTATTTCGAATAAGCTTGTATGAAATG
1 CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTTTAT-AACTG
* * * * * * *
42630 AAATAATTGTTTTATTACAAAACAAAAGATCATAATGATTTTAAATAGATAATATTCAAATAGCC
65 AAACAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATATTCAAATAGAC
* * * *
42695 ATAACTATTTAAATTTGTTAAATAAACAAATTAATTTTTTTAAACTCTTG
130 ATAACTATTTAAATCTGTTAAATAAAAAAATTAATCTTTTTAAACACTTG
* * * *
42745 CTAATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATCTTGGATAAGCTTTTATGAACTG
1 CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTTTAT-AACTG
* * *
42810 AAACAATTGTTTTTTTGTCAAAACAAAAGGTCATAA
65 AAACAATT-ATTTTATGACAAAACAAAAGGTCATAA
42846 TTATTTATTA
Statistics
Matches: 234, Mismatches: 40, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
179 1 0.00
180 153 0.65
181 58 0.25
182 22 0.09
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (179 bp):
CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTTTATAACTGA
AACAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATATTCAAATAGACA
TAACTATTTAAATCTGTTAAATAAAAAAATTAATCTTTTTAAACACTTG
Found at i:44052 original size:19 final size:19
Alignment explanation
Indices: 44028--44066 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
44018 ATAATATAAT
*
44028 TATTAATTTTTATGATTTA
1 TATTAATTTTAATGATTTA
*
44047 TATTAATTTTAATTATTTA
1 TATTAATTTTAATGATTTA
44066 T
1 T
44067 TAATTATGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (19 bp):
TATTAATTTTAATGATTTA
Found at i:44069 original size:17 final size:18
Alignment explanation
Indices: 44027--44071 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
44017 CATAATATAA
*
44027 TTATTAATTTTTATGATT
1 TTATTAATTTTAATGATT
*
44045 TATATTAATTTTAATTA-T
1 T-TATTAATTTTAATGATT
44063 TTATTAATT
1 TTATTAATT
44072 ATGAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 8 0.33
18 3 0.12
19 13 0.54
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TTATTAATTTTAATGATT
Found at i:44177 original size:18 final size:18
Alignment explanation
Indices: 44138--44179 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
44128 TCACATAACA
* *
44138 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
44156 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
44173 AATAATT
1 AATAATT
44180 AATAATTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:45113 original size:18 final size:18
Alignment explanation
Indices: 45074--45115 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
45064 TCACATAACA
* *
45074 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
45092 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
45109 AATAATT
1 AATAATT
45116 AATAACTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:46137 original size:17 final size:16
Alignment explanation
Indices: 46108--46157 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
46098 TAGTTTTTAT
46108 TAATTATAAATTAATTGA
1 TAATTA-AAATTAATT-A
46126 TAATTAAAATT-ATT-
1 TAATTAAAATTAATTA
46140 TAATT-AAATTAATTA
1 TAATTAAAATTAATTA
46155 TAA
1 TAA
46158 CTGTATAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 3 0.10
16 3 0.10
17 5 0.17
18 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
TAATTAAAATTAATTA
Found at i:47817 original size:17 final size:16
Alignment explanation
Indices: 47788--47837 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
47778 TAGTTTTTAT
47788 TAATTATAAATTAATTGA
1 TAATTA-AAATTAATT-A
47806 TAATTAAAATT-ATT-
1 TAATTAAAATTAATTA
47820 TAATT-AAATTAATTA
1 TAATTAAAATTAATTA
47835 TAA
1 TAA
47838 CTGTATAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 3 0.10
16 3 0.10
17 5 0.17
18 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
TAATTAAAATTAATTA
Found at i:48013 original size:19 final size:19
Alignment explanation
Indices: 47986--48024 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
47976 ATAATATAAT
*
47986 TATTAATTTTTATGATTTA
1 TATTAATTTTAATGATTTA
* *
48005 TATTCATTTTAATTATTTA
1 TATTAATTTTAATGATTTA
48024 T
1 T
48025 TAATTATGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (19 bp):
TATTAATTTTAATGATTTA
Found at i:48122 original size:16 final size:17
Alignment explanation
Indices: 48101--48135 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
48091 TAACAAATAG
48101 TTTATTTTT-ATTATAA
1 TTTATTTTTAATTATAA
48117 TTTATTTTTAATTATAA
1 TTTATTTTTAATTATAA
48134 TT
1 TT
48136 AATAATTGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTATTTTTAATTATAA
Found at i:49051 original size:17 final size:18
Alignment explanation
Indices: 49029--49065 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
49019 TAACAAACAG
*
49029 TTTATTTTTTATT-ATAA
1 TTTATTTTTAATTAATAA
49046 TTTATTTTTAATTAATAA
1 TTTATTTTTAATTAATAA
49064 TT
1 TT
49066 AATAACTGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATTTTTAATTAATAA
Found at i:50747 original size:180 final size:176
Alignment explanation
Indices: 50485--50894 Score: 482
Period size: 180 Copynumber: 2.3 Consensus size: 176
50475 ATAGTTGTGA
* * * * *
50485 CTATTTGAACAATTATTTATTTAAAATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTT
1 CTATTTGAA-TATTATCTATTTAAAATCATTATGACCTTTTGTTTTGTC-ATAAAACAACTGTTT
*
50550 CAGTTCATAAAAGCTTA-TCCAAGATAAAATAATACCAATTTCTTAATATTTCAAAAATTAATGA
64 CAGTTCATAAAAGCTTATTCCAA-ATAAAATAATACCAATTTATTAATATTTCAAAAATT-A--A
* * * * *
50614 GCAAGAG-TTTAAAAAAATTAATTTGTTTATTTAAGAAATTTAAATAGTTAGGG
125 -CAAGAGATTT-AAAAAATGAATTTGTTTACTGAAGAAATTCAAATAATTAGGG
*
50667 CTATTTGAATATTATCTATTTAAAATCATTATGATCTTTTGTTTTGTCATAAAACAACTGTTTCA
1 CTATTTGAATATTATCTATTTAAAATCATTATGACCTTTTGTTTTGTCATAAAACAACTGTTTCA
* * ** *
50732 GTTCATACAAGCTTATTCGAAATAAAATAATAGTAATTTATTAATATTTCAAAAATTAACAAGTG
66 GTTCATAAAAGCTTATTCCAAATAAAATAATACCAATTTATTAATATTTCAAAAATTAACAAGAG
* ** * *
50797 ATTTAAAAAATGATTTTGTTTACTGAATTAGTTCAAATAATTATGG
131 ATTTAAAAAATGAATTTGTTTACTGAAGAAATTCAAATAATTAGGG
* * * * *
50843 CTATTTCAATAATTATCTATTTGAAATCAATATTACCTTTTGTTTGGTCATA
1 CTATTTGAAT-ATTATCTATTTAAAATCATTATGACCTTTTGTTTTGTCATA
50895 TAATAATTGT
Statistics
Matches: 197, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
176 46 0.23
177 40 0.20
179 1 0.01
180 62 0.31
181 39 0.20
182 9 0.05
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.41
Consensus pattern (176 bp):
CTATTTGAATATTATCTATTTAAAATCATTATGACCTTTTGTTTTGTCATAAAACAACTGTTTCA
GTTCATAAAAGCTTATTCCAAATAAAATAATACCAATTTATTAATATTTCAAAAATTAACAAGAG
ATTTAAAAAATGAATTTGTTTACTGAAGAAATTCAAATAATTAGGG
Found at i:50864 original size:16 final size:17
Alignment explanation
Indices: 50832--50864 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
50822 AATTAGTTCA
50832 AATAATTATGGCTATTTC
1 AATAATTAT-GCTATTTC
50850 AATAATTAT-CTATTT
1 AATAATTATGCTATTT
50865 GAAATCAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATGCTATTTC
Found at i:51781 original size:17 final size:16
Alignment explanation
Indices: 51752--51801 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
51742 TAGTTTTTAT
51752 TAATTATAAATTAATTGA
1 TAATTA-AAATTAATT-A
51770 TAATTAAAATT-ATT-
1 TAATTAAAATTAATTA
51784 TAATT-AAATTAATTA
1 TAATTAAAATTAATTA
51799 TAA
1 TAA
51802 CTGTATAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 3 0.10
16 3 0.10
17 5 0.17
18 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
TAATTAAAATTAATTA
Found at i:52100 original size:18 final size:18
Alignment explanation
Indices: 52061--52102 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
52051 TCACATAACA
* *
52061 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
52079 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
52096 AATAATT
1 AATAATT
52103 AATAATTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:52978 original size:13 final size:13
Alignment explanation
Indices: 52960--52984 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52950 GTATAAATTT
52960 ATATAATTATATA
1 ATATAATTATATA
52973 ATATAATTATAT
1 ATATAATTATAT
52985 CACATAACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATAATTATATA
Found at i:53020 original size:17 final size:18
Alignment explanation
Indices: 52998--53034 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
52988 ATAACAAAAG
*
52998 TTTATTTTTTATT-ATAA
1 TTTATTTTTAATTAATAA
53015 TTTATTTTTAATTAATAA
1 TTTATTTTTAATTAATAA
53033 TT
1 TT
53035 AATAACTGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATTTTTAATTAATAA
Found at i:54718 original size:179 final size:176
Alignment explanation
Indices: 54424--54865 Score: 496
Period size: 174 Copynumber: 2.5 Consensus size: 176
54414 AAAGGATATG
* * * * * * * * *
54424 AAAAAATAAATCTGTTTAC-CAATCAAGTTCAAATAGTTGTGACAATTTGAACAATTATTTATTT
1 AAAAAATGAATTTGTTTACTGAA-CAAATTCAAATAGTTATGGCTATTTGAA-TATTATCTATTT
54488 AAAATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAAGCTTA-TCCA
64 AAAATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAAGCTTATTCCA
* *
54552 AGATAAAATAATACTAATTTCTTAATATTTCAAAAATTAATGAGCAAGAGTTT
129 A-AT-AAATAATACTAATTTATTAATATTTCAAAAATTAATAAG--AGA-TTT
* * * *
54605 AAAAAAATTAATTTGTTTATTTAACAAATTTAAATAGTTATGGCTATTTGAATATTATCTATTTA
1 -AAAAAATGAATTTGTTTACTGAACAAATTCAAATAGTTATGGCTATTTGAATATTATCTATTTA
* * * * *
54670 AAATCATTATGATC-TTTGTTTTGTC-ATAAAACAATTGTTTCAGTTCATACAAGCTTATTCGAA
65 AAATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAAGCTTATTCCAA
* *
54733 ATAAATAATAGTAATTTATTAATATTTCAAAAATTAATAAGTGATTT
130 ATAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAGATTT
* ** * * * *
54780 AAAAAATGATTTTGTTTACTGAATTAGTTCAAATAATTATGGCTATTTCAATAATTATCTATTTG
1 AAAAAATGAATTTGTTTACTGAACAAATTCAAATAGTTATGGCTATTTGAAT-ATTATCTATTTA
* *
54845 AAATCAATATTACCTTTTGTT
65 AAATCATTATGACCTTTTGTT
54866 CGGTCATATA
Statistics
Matches: 222, Mismatches: 34, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
174 42 0.19
175 25 0.11
176 8 0.04
178 36 0.16
179 32 0.14
180 14 0.06
181 24 0.11
182 39 0.18
183 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (176 bp):
AAAAAATGAATTTGTTTACTGAACAAATTCAAATAGTTATGGCTATTTGAATATTATCTATTTAA
AATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAAGCTTATTCCAAA
TAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAGATTT
Found at i:54843 original size:16 final size:17
Alignment explanation
Indices: 54811--54843 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
54801 AATTAGTTCA
54811 AATAATTATGGCTATTTC
1 AATAATTAT-GCTATTTC
54829 AATAATTAT-CTATTT
1 AATAATTATGCTATTT
54844 GAAATCAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATGCTATTTC
Found at i:54938 original size:175 final size:175
Alignment explanation
Indices: 54477--54949 Score: 468
Period size: 175 Copynumber: 2.7 Consensus size: 175
54467 AATTTGAACA
* * ** * * *
54477 ATTATTTATTTAAAATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAA
1 ATTATCTATTTAAAATCAATATGACC-TTTGTTCGGTC-ATAAAACAATTGTTTCAGTTCATACA
* * * *
54542 AGCTTATCCAAGATAAAATAATACTAATTTCTTAATATTTCAAAAATTAATGAGCAAGAGTTTAA
64 AGCTT-TCGAA-ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG--TGAGTTTAA
* * * * * *
54607 AAAAATTAATTTGTTTATTTAACAAATTTAAATAGTTATGGCTATTTGAAT
125 AAAAATGAATTTGTTTACTGAACAAATTCAAATAATTATGGCTATTTCAAT
* * **
54658 ATTATCTATTTAAAATCATTATGATCTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAG
1 ATTATCTATTTAAAATCAATATGACCTTTGTTCGGTCATAAAACAATTGTTTCAGTTCATACAAG
*
54723 CTTATTCGAAAT-AAATAATAGTAATTTATTAATATTTCAAAAATTAATAAGTGA-TTT-AAAAA
66 C-T-TTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTGAGTTTAAAAAA
* ** *
54785 ATGATTTTGTTTACTGAATTAGTTCAAATAATTATGGCTATTTCAAT
129 ATGAATTTGTTTACTGAACAAATTCAAATAATTATGGCTATTTCAAT
* * * * ***
54832 AATTATCTATTTGAAATCAATATTACCTTTTGTTCGGTCATATAATAATTGTTTTTTTATCATAC
1 -ATTATCTATTTAAAATCAATATGACC-TTTGTTCGGTCATAAAACAATTGTTTCAGT-TCATAC
* * ** * *
54897 AAGC-TTCTAAATAAAATAACACTAATTTATTAACCTTTCAAAAGTTAGTAAGT
63 AAGCTTTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGT
54950 AAGAAATTTA
Statistics
Matches: 248, Mismatches: 38, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
174 49 0.20
175 59 0.24
176 25 0.10
177 10 0.04
178 36 0.15
179 29 0.12
180 15 0.06
181 25 0.10
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.42
Consensus pattern (175 bp):
ATTATCTATTTAAAATCAATATGACCTTTGTTCGGTCATAAAACAATTGTTTCAGTTCATACAAG
CTTTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTGAGTTTAAAAAAAT
GAATTTGTTTACTGAACAAATTCAAATAATTATGGCTATTTCAAT
Found at i:55633 original size:18 final size:18
Alignment explanation
Indices: 55594--55635 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
55584 TCACATAACA
* *
55594 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
55612 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
55629 AATAATT
1 AATAATT
55636 AATAACTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Done.