Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167919.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_183, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56284
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:3305 original size:417 final size:418
Alignment explanation
Indices: 2530--3371 Score: 1309
Period size: 417 Copynumber: 2.0 Consensus size: 418
2520 CTGGGTTTAG
**
2530 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCATCC
* * *
2595 CTTAAGCCTTCATGTGAAGTTTCATGGGAAGACGACTCGTTTTCAATTTTTCACGATTTTTGAAA
66 CTTAAGCCCTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACGATTTTTAAAA
* * * * *
2660 CTTTTTATGGTTTGGGATTTTTTTAAAAAATTTTCAGAAGGATTTTTGGCCCCAGACTTGGTAGA
131 CTTTTTACGGTTTGAGATTTTTTTAAAAAATTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGA
* * *
2725 CGTGATCCTTGTATTCTTTTTGGCACGCAAAAAAAAATTTAGCTAAAAACTCGAAGTGTATAGGA
196 CGTGATCCTTGTATTCTTGTTGGCACGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
* *
2790 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTGCCAGCAAACCT
*
2855 GTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-TGGGCAA
326 GTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAA
* *
2919 ATATAAGGGCGAAGTACCAGCACCCATT
391 ATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
2947 GCACATCTTCATTTTTTTGCCGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACTATCATCC
1 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCATCC
* *
3012 CTTAAGCCCTCATGTGAAGTTTCATGGCAAGACGACT-GATTTTCTATTTTTTACGATTTTTAAA
66 CTTAAGCCCTCATGTGAAGTTTCATGGCAAGACGACTCG-TTTTCAATTTTTCACGATTTTTAAA
**
3076 ACTTTTTACGGTTCT-AGACTTTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGT
130 ACTTTTTACGGTT-TGAGA-TTTTTTTAAAAAATTTTCAGAAGGAGTTTTGGCCCCAAACATGGT
* *
3139 AGACGTGATCCTTGTAGTT-TTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTGC
193 AGACGTGATCCTTGTA-TTCTTGTTGGCACGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
3203 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTGTAATGGCTACTGCCAGCAA
257 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTGCCAGCAA
*
3268 ACCTGTAAAATCTCAAATGCTCTTTAAGG-GAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
322 ACCTGTAAAATCTCAAATGCTCTTTAAGGAG-GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
*
3332 GGCCAATATAAGGGCCAAGTACCAGCACCCATC
386 GGCAAATATAAGGGCCAAGTACCAGCACCCATC
3365 GCACATC
1 GCACATC
3372 ATGTGCGCAC
Statistics
Matches: 387, Mismatches: 32, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
416 2 0.01
417 337 0.87
418 48 0.12
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (418 bp):
GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCATCC
CTTAAGCCCTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACGATTTTTAAAA
CTTTTTACGGTTTGAGATTTTTTTAAAAAATTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGA
CGTGATCCTTGTATTCTTGTTGGCACGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTGCCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAA
ATATAAGGGCCAAGTACCAGCACCCATC
Found at i:3458 original size:61 final size:62
Alignment explanation
Indices: 3356--3481 Score: 157
Period size: 61 Copynumber: 2.0 Consensus size: 62
3346 CCAAGTACCA
* ** *
3356 GCACCCATCGCACATCATGTGCGCACACCCCCCCC-GGCCCCCCAATCGCCAGAACCCCAAT
1 GCACCCATCGCACATCACGTGCGCACACCCCCCCCACCCCCCCCAATCGCAAGAACCCCAAT
* * *
3417 GCACCCATCGCACA-CTACGTGCGCACACTCCCCTCACCCCCCCCCAATCGTAAGAACCCCAAT
1 GCACCCATCGCACATC-ACGTGCGCACACCCCCCCCA-CCCCCCCCAATCGCAAGAACCCCAAT
3480 GC
1 GC
3482 CGCTGGTCAG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
60 1 0.02
61 30 0.55
63 24 0.44
ACGTcount: A:0.24, C:0.52, G:0.13, T:0.11
Consensus pattern (62 bp):
GCACCCATCGCACATCACGTGCGCACACCCCCCCCACCCCCCCCAATCGCAAGAACCCCAAT
Found at i:4512 original size:26 final size:26
Alignment explanation
Indices: 4483--4535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4473 CCGATTCGAT
4483 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
4509 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
4535 C
1 C
4536 CTAAGTCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:5259 original size:885 final size:887
Alignment explanation
Indices: 3529--5396 Score: 2647
Period size: 885 Copynumber: 2.1 Consensus size: 887
3519 TCCCAAAGCA
* *
3529 AAAAAAAATGAGGCACCAGGACATGCCCGAGCCCAGCATGTGCAC-CTGCAACCCTCGGT-C-TT
1 AAAAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCTGCAACCCTCGGTCCGAT
*
3591 GTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAG
66 -TC-GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *** *
3656 TCAACCCACGAAACGAGCGTGCAGGCACTCAGTCGGCCAGAGGGGCAGGATATGTAAGTCGGGGA
129 TCAACCCACGAAACAAGCGTGCAGGCACTCAGCCAGCCAGAGGGGCAGGATACACAAGTCGAGGA
* * *
3721 TCGATCTAGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCACAACCCTCGGTCTGGTTTGATCTTA
194 TCGAACTAGTCCCCCCTGCGTGCTGTCGATCTTACTGCCACAACCCTCGGTCTGGTCTGATCTTA
* * * *
3786 GACTGGGAATGAACTCCGTATTCCTAAGCCAATCGACGAAACGAGCAGGCGGGCGGGCACTACGC
259 GACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCAGGCACTACGC
* * *
3851 CGGCCAGAGGGACGGGTTGTGCAAGCCATGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCT
324 CGGCCAAAGGGACGGGATGCGCAAGCCATGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCT
3916 TCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
389 TCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
3981 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
454 TTCATGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATCTTCAAAACTTTTTAC
* *** * *
4046 TGTTCAAGATATTTTTAAAAATTTTTTAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCC
519 GGTTCAAGATATTTTTAAAAATTTTTTAGAAGGAGTTTTGGTAAAAAACTTGGAAGACATGATCC
* ** *
4111 TTGAGTTTTTGTTGGCATGCATAAAAACTTTCAGCTAAAAACTAGAAATGTACAAGATTTTGTGA
584 TTGAGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAATCTACAAGATTTTGTGA
* * * * * *
4176 CCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
649 CCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAACAAACCTGCAAAATC
* * *
4241 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
714 TCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATCAGGGATAGGGGGCAAATATAAGG
* * * *
4306 GCCAAGTACCAGCACCCATCGCACATCACGTGCGTATACCCCCCTCGCGCCCCAATCACCGAAAC
779 GCCAAGTACCAGCACCCATCGCAAATAACGTGCGCACACCCCCCTCGCGCCCCAATCACCGAAAC
* * **
4371 CCCAATGCCGCCGGTCAGGTTCTTCGGTGATGGTGCCCCGGGTG
844 CCCAATGCCACCGGTCAGGTTCTCCGACGATGGTGCCCCGGGTG
* * * * *
4415 -AAAAAAATGTGACACTAGCACATGCCCGAGCCCAGCATGTCCACTC-ACAACCCTCGGTCCGAT
1 AAAAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCTGCAACCCTCGGTCCGAT
*
4478 TCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
66 TCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
4543 ACCCCACGAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCACAAGTCGAGGTTC
131 AACCCACGAAACAAGCGTGCAGGCACTCAGCCAGCCAGAGGGGCAGGATACACAAGTCGAGGATC
* ***
4608 -AACTGGGTCCCCCACTGCGTGCTGTCGATGC-TACTGCTGTAACCCTCGGT-TCGGTCTGATCT
196 GAACT-AGTCCCCC-CTGCGTGCTGTCGAT-CTTACTGCCACAACCCTCGGTCT-GGTCTGATCT
*
4670 TAGACTGGGAATGAACTCCATATGCCTAAGCC-ACCGACGAAACGAG-AGGGCTGGCAGGCACTA
257 TAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCA-GGCGGGCAGGCACTA
* * *
4733 CGTCGGCCAAAGAGG-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
321 CGCCGGCCAAAG-GGACGGGATGCGCAAGCCATGGATCGATAGGGCGGTAGGTGGGTTTAGGCAC
**
4797 ATCTTCATATTTCTGGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
385 ATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
4862 AGCCTTCATGTGAAGCTTCATGGCTAGACGACTCGTTTTCTATTTTTCATC-ATCTTCAAAACTT
450 AGCCTTCATGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-CGATCTTCAAAACTT
**
4926 TTTACGGTTCGGGATATTTTT-AAAATTTTTTCAGAAGGAGTTTTGGTTAAAAAAC-TGGAAGAC
514 TTTACGGTTCAAGATATTTTTAAAAATTTTTT-AGAAGGAGTTTTGG-TAAAAAACTTGGAAGAC
* * * * *
4989 ATGATCCTTG-GATTTTTGTTGGTATGTACAAAAAAATTCAGCTAAAAACTCGAAGTCTACAGGA
577 ATGATCCTTGAG-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAATCTACAAGA
5053 TTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAACAAACCT
641 TTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAACAAACCT
**
5118 GCAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATCAGGGATAGGGGGCAA
706 GCAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATCAGGGATAGGGGGCAA
* *
5183 ATATGAGGGCCAAGTACCAGCACCCATCGCAAATAATGTGCGCACACCCCTCCT-GC-CCCCTAA
771 ATATAAGGGCCAAGTACCAGCACCCATCGCAAATAACGTGCGCACACCCC-CCTCGCGCCCC-AA
** * *
5246 TCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGGTTCCCCGGGTG
834 TCACCGAAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGGTGCCCCGGGTG
* * * * * *
5300 AAAATAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTGCA-TCTGCAACCTTCGGTCTGG
1 AAAA-AAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCTGCAACCCTCGGTCCGA
5364 TTCGATCTTACACTGGGAATGAACTCCGTATGC
65 TTCGATCTTACACTGGGAATGAACTCCGTATGC
5397 CTAAGCCAAC
Statistics
Matches: 868, Mismatches: 96, Indels: 35
0.87 0.10 0.04
Matches are distributed among these distances:
884 19 0.02
885 679 0.78
886 89 0.10
887 81 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
AAAAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCTGCAACCCTCGGTCCGAT
TCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACAAGCGTGCAGGCACTCAGCCAGCCAGAGGGGCAGGATACACAAGTCGAGGATC
GAACTAGTCCCCCCTGCGTGCTGTCGATCTTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGA
CTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCAGGCACTACGCCG
GCCAAAGGGACGGGATGCGCAAGCCATGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CATGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATCTTCAAAACTTTTTACGG
TTCAAGATATTTTTAAAAATTTTTTAGAAGGAGTTTTGGTAAAAAACTTGGAAGACATGATCCTT
GAGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAATCTACAAGATTTTGTGACC
ATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAACAAACCTGCAAAATCTC
AAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATCAGGGATAGGGGGCAAATATAAGGGC
CAAGTACCAGCACCCATCGCAAATAACGTGCGCACACCCCCCTCGCGCCCCAATCACCGAAACCC
CAATGCCACCGGTCAGGTTCTCCGACGATGGTGCCCCGGGTG
Found at i:5564 original size:26 final size:26
Alignment explanation
Indices: 5528--5580 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5518 CTAGCCCGAT
* *
5528 CTTACACTGGGAATGCACTCCGTATG
1 CTTACACTGGGAATGAACTACGTATG
*
5554 CTTAGACTGGGAATGAACTACGTATG
1 CTTACACTGGGAATGAACTACGTATG
5580 C
1 C
5581 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTACGTATG
Found at i:8238 original size:26 final size:26
Alignment explanation
Indices: 8209--8259 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
8199 CTGGTCCGAT
8209 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
8235 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
8260 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:10027 original size:26 final size:26
Alignment explanation
Indices: 9991--10044 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
9981 CTAGTCCGAC
9991 CTTACACTGGGAATGAACGCCATATG
1 CTTACACTGGGAATGAACGCCATATG
* * *
10017 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACGCCATATG
10043 CT
1 CT
10045 AAGTCAACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACGCCATATG
Found at i:10924 original size:26 final size:26
Alignment explanation
Indices: 10886--10938 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10876 CTGGTTCGAT
10886 CTTACACTAGGAAAGAACTCCGTATG
1 CTTACACTAGGAAAGAACTCCGTATG
* * * *
10912 CTTATACTGGGAATGAACTTCGTATG
1 CTTACACTAGGAAAGAACTCCGTATG
10938 C
1 C
10939 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAAAGAACTCCGTATG
Found at i:12159 original size:896 final size:895
Alignment explanation
Indices: 5505--13784 Score: 10496
Period size: 895 Copynumber: 9.3 Consensus size: 895
5495 ATCCTGCTGT
** * *
5505 CGCAACCCTCGGTCTAGCCCGATCTTACACTGGGAATGCACTCCGTATGCTTAGACTGGGAATGA
1 CGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * *
5570 ACTACGTATGCCTAAGTCAACCCATGAAATGAGCGAGCGGGCACTCAGTCGG-CATGAGGGGCAA
66 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAT-AGGGGCAG
* * ** * * *
5634 GATGCGCAAGTCGGGGGTCAACCGGGTCCCCCAC-AGCGTGCTGTCGATGCTGCTGCTACAACCC
130 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCC-CTA-CGTGCTGTCGATCCTACTGCTGCAACCC
* * * * * *
5698 TCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCC-ACCGACGAAACGA--
193 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC
** * * * *
5760 --GCGGGTAGGCACTACGTCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGAGGCA
258 GGGCGGGCGGGCACTACATCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
5823 GGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
323 GGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
** * * * *
5888 TACAATCATTCCTTAAGTCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTGAC
388 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * ** * *
5953 GATTTTTGAAACATTTTACGGTTCGAGATTTTTTAAAAAACTTTTCAGAAGGAGTTTTGACTCCA
453 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
** * *
6018 AACTTTTTAGACGTGATCCTTGTACTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGA
518 AACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
6082 AGTGTACAGGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGGCACTTTAATGGCTACTG
583 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
6147 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
648 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
6212 ATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGC
713 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-
* * * * * *
6277 CCCCCCAATCGCTGCAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGC
777 CCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* * * * * **
6342 CCTGGGCGAAAAAAATA-CGGCACCAGCACATTCCTGAGCATAGCATGTGCACC
842 CCCGGGCGAAAAAAAAATGGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
* * * * * * *
6395 CACAACCCTCGATCCGGTCCAATCTTACACTGGGAATGAACCCCTTATGCTTAAACTGGGAACGA
1 CGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * *
6460 ACTTCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAGCCGACCAAAGGGGCAGG
66 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCAGG
** * * * ** *
6525 ATGCGCAAGCCAAGGATCGGTCGGGTCCCCCCTACGTGTTGCCGATCCTACTGCCACAACCCTCA
131 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCTACGTGCTGTCGATCCTACTGCTGCAACCCTCG
* * * * *
6590 GT-TCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA-CAGAATGATCG
196 GTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA-AACGAGCG
* ** * * * *
6653 AGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCTCAAGCCATGGATTGATAGGGTGGTGG
259 GGCGGGCGGGCACTACATCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
6718 GTGGGTTTAGGCACATCTTTATATTTTTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
324 GTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* ** * * *
6783 ACAGTCATCCCTTAAGCCTTCATATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATG
389 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
6848 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT-TAA-TTTTTCAGAAGGATTTTTGGCCCCAA
454 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* *
6911 ACTTGGTAGATATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAA
519 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
6976 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
584 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
7041 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGA
649 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
7106 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCTGCC
714 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCC
* ** * *
7171 CGCCCAATCGTCAAAACCCCAATGCCGTCGGTAAGGTTCTCCGACGATGCTTCGACGATGGTGCC
779 C-CCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
7236 CCGGGCGAAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
843 CCGGGCG-AAAAAAAAATG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
* ** * * * *
7291 CGAAACCCTATGTCCGGTCTGATCTGACAATGGGAATGAACTCCGTATGCTTAGACTAGGAATGA
1 CGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * *
7356 ACTCCGTATGCCTAAGTCAACCTACGAAATGAGTGTGCGGGCGCTCAGTCGGCCATAGGGGCAGG
66 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCAGG
* * * * * * *
7421 ATGCGCAAGCCGGAGATAGGCCGGGT-CCCCCTACATGCTATCGATCCTACTACCGCACCCCTCG
131 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCTACGTGCTGTCGATCCTACTGCTGCAACCCTCG
* * *
7485 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAACGAGCGGG
196 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGG
*
7550 CGGGCGGGCACTACATCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGT
261 CGGGCGGGCACTACATCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
7615 GGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCAATTTAATGGCTTGTAAATTCATAC
326 GGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
7680 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTAGTTTTCTATTTTTCATGAT
391 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
*
7745 TTTTGAAACTTTTTACGGTTC-AGGATTTTTTTAAAATTTTTTCAGATGGAGTTTTGGCCCCAAA
456 TTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * * *
7809 CTTGGTAGACATGATCCTTGTATTTTTGTTGGTATGCATAAAAAAATTAAGCTAAAAACTCAAAG
520 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
7874 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGC
585 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
7939 AGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTTTTGAGGTTTGATGAGGGAT
650 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
8004 AGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGCACAGCCCCCCG-C
715 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGCC
* * ** * * * *
8068 CCCCAATCGTCGGAACCCAAATGCCACCGGTCTGGTTCTCCAATGATGCTCC-AGCGACGGTGCC
779 CCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCC
* * * * * *
8132 CCAGGTGAAAAAAAAATGCAGCACCAGCACATGCCCAAGCCCAACAAGTGCACC
843 CCGGGCGAAAAAAAAATG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
* *
8186 CGAAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
1 CGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * ** * * **
8251 ACTCCGTAT-CCTAAGTCAACACACGAAATGAACGTACGGGCGCTCAACCGACCAGATAGGCAGG
66 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCAGG
* * * * * * * *
8315 ATGCGCAAGCCGGGGATCGACTGGGTCCCCCCCTGCATGCTG-CTAATCCTGCTACTACAACCCT
131 ATGCGCAAGCCGGGGATCGGCCGGGT-CCCCCCTACGTGCTGTC-GATCCTACTGCTGCAACCCT
** * * * *
8379 CAATCCGATCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCG
194 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCG
* * * * * * * * *
8444 AGTGGGCCGGCACTACACCAGCTAGAGA-GCAGGATGCGCAAGTCGTGGATCGATAAGGTGGTAG
259 GGCGGGCGGGCACTACATCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
8508 GTGGGTTTAGGCACATCTTCATATTTCTT-CCATGCCAATGCCATTTCTATGGCTTGTAAATTCA
324 GTGGGTTTAGGCACATCTTCATATTT-TTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
8572 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCGTGGCAAGATGACTCATTTTCTATTTTTCAC
388 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
8637 -ATTTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGTGTTTTGGTCCC
453 GA-TTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
* * * * *
8701 AAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGTACAAAAAAATTCAGCCAAAAACTCG
517 AAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
8766 AAGTGTACAGGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
582 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
8831 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGACGAGG
647 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * *
8896 GATAGAGGGCCAATATAAGGGCCAAGTACTAACACCCATCGTACATCATGTGCGCACA-----C-
712 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * **
8955 CCCCCCAATCACGGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTCCGGTGATGGTGC
777 CCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* * *
9020 CCCAGGC-AAAAAAAAATGTGGCACCAACACATGCCCAAGCCCAGCATGTGCACC
842 CCCGGGCGAAAAAAAAATG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
* * * * *
9074 CGTAACCCTCGGTCTGGTTCGATCATACCCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
1 CGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * *
9139 ACTCCGTTTGCCTAAGTCAACTCATGAAACGAGTGTGTGGGCGCTCAGTCGGCCAGAGGGGCAGG
66 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCAGG
* * * * * * *
9204 ATGGGCAAGCCGGGGATCGGTCGGGTCCCCCCTATGTGCTG-CCAGTCTTGCTGCTGCAAACCTC
131 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCTACGTGCTGTCGA-TCCTACTGCTGCAACCCTC
* * * * *
9268 AGTTTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCGTAAGCCAACCGATGAAACGAGCGG
195 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGG
* * *
9333 GCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGG
260 GCGGGCGGGCACTACATCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * * *
9398 TGGGTTTAAGCTCATCTTCATATTTCTACCATGCCAATGCCATTTTAATGGCTTGTAAATTTATA
325 TGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
9463 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAGGGCAAGACGACTCGTTTTCTATTTTTCACGA
390 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
9528 TTTTTAAAACATTTTACAGTTCAAGATTTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
455 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
** * * *
9592 CTTTATAGACTTGATCCATGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
520 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
9657 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-ATCGCTACTGGC
585 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
9721 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGAT
650 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * **
9786 AGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGTGCACACCCCCTACCC
715 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCC
* * * **
9851 CGCCAATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCTGACGATCCTCCGGTGATGGTGCCC
780 C-CCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
*
9916 CGGGCG-AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
844 CGGGCGAAAAAAAAAT-GGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
* * * ** * * *
9968 CGTAACCATCAGTCTAGTCCGACCTTACACTGGGAATGAACGCCATATGCTTAGACTGGGAATGA
1 CGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * *
10033 ACTCCGTATG-CTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGG
66 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCAGG
* * * * ** *
10097 ATGCGTAAGCCGGGAATCGGTCGGGTCCCCCATACGTGCTG-CTGATCCTGA-TAATGTAACCCT
131 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCTACGTGCTGTC-GATCCT-ACTGCTGCAACCCT
* * *
10160 TGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGC
194 CGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC
* **
10224 GGGC-GGCGGGCACTACATCGACCAGAGAGGCGATATGCGCAAGCCGTGGATCGATAGGGTGGTA
258 GGGCGGGCGGGCACTACATCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
10288 GGTGGGTTTAGGCACATCTTCATATTTTTGTCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
323 GGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
10353 TACAATGGTCCTTTGAGCCTTCATGTTAGGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
388 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* *
10418 -AATTTTGAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
453 GATTTTTG-AAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
* ** * * *
10482 AAACTTGGTGGATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAATATTCAGCTAAAAACTTG
517 AAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
10546 AAGTGTACAGGATTTTGTGACCATCTGAAAAAAGTGTCCACATTTCAGACACTTTAATCGCTACT
582 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
10611 GGCAGTAAACCTGTAAAATCTCAAATGCT-TCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAT
647 GGCAGCAAACCTGTAAAATCTCAAATGCTCT-TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * * *
10675 GGATAGGGGGCCAGTATAAGGGCCAAGTATCAGCATCCATCGCACATCATCTGCGCATAGCCCCT
711 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-
* ** **
10740 CTTGCCCCCCAATCGTTGGAACCCCAATGCCGTCAATCAGGTTCTCCTG-CGATGCTCCGACGAT
774 C-CGCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GACGATGCTCCGACGAT
* * * * * **
10804 GGTGCCACGGGCG-AAAAAAAATGCAGCACCAACACATACCCGAGCCTAGCATGTGCATT
837 GGTGCCCCGGGCGAAAAAAAAATG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
* * * * * *
10863 CGCAACCCTTGGTCTGGTTCGATCTTACACTAGGAAAGAACTCCGTATGCTTATACTGGGAATGA
1 CGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * * *
10928 ACTTCGTATGCCTAAGTCAACCCACGAAGCGAGCATCCGGGCGTTCAGTCGGCCAGAAGGGCAGG
66 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCAGG
* * * * * * ** *
10993 ATGCACAAGCCGGGGATCGACCGGGTCCCCTCGTGCATGCTGTCGATCCTGCTGCCACAACCCTT
131 ATGCGCAAGCCGGGGATCGGCCGGGTCCCC-CCTACGTGCTGTCGATCCTACTGCTGCAACCCTC
** * ** * **
11058 AATCTCGTATGATCTTAAACTGGGAATGAACTTTGTATGCCTAAGCCAACCGATGAAACGAGCGG
195 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGG
* * *
11123 GCGGGCGGGCACTAC-GCTGGCCAGAGAGGCGGGATGCACAAGTCGTGGATCGATAGGGTGGTAG
260 GCGGGCGGGCACTACATC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
11187 GTGGGTTTATGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
324 GTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
11252 ACAATGGTCCCTGAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTGACG
389 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
11317 ATTTTTGAAACTTTTTACGATTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCTAC
454 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * * *
11382 GCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCGCAAAAACATTCAGCTAAAAACTCGAA
519 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
11447 GTGTACAAGATTTTGTGACCACTTGAAAAAAGTG-CCCCATTTCAGACACTTTAATGGCTATTGG
584 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
11511 CAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGA
649 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
11576 TAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCTTTGTACATCATGTGCGCACACCCCTCCGA
714 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCG-
* * * *
11640 CCCCCCAATCACCGAAACCCCAATGCCTTCGGTCAGGTTCTCCGACGATTCTCCGACGATGGTGC
777 CCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
** * ** *
11705 CCTAGGCGAAAAAAAAATGGAGCACCAGCACATGCCCTAGGGCAACATGTGCACC
842 CCCGGGCGAAAAAAAAATGG-GCACCAGCACATGCCCGAGCCCAGCATGTGCACC
* * * * *
11760 TGCAACCCTTGGTCCGGTCCGATCTTACACTAGGCATGAACTCCATATGCTTAGACTGGGAATGA
1 CGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* *
11825 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCATA-GAGCAGG
66 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCAGG
* * * * * * * *
11889 ATGCGTAAGTCAGGCATCAGCCGAGTCCACCCCTACGTGCTGTCGATCCTACTGCCGCATCCCTC
131 ATGCGCAAGCCGGGGATCGGCCGGGTCC-CCCCTACGTGCTGTCGATCCTACTGCTGCAACCCTC
* * *
11954 GGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGG
195 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGG
* * * * *
12019 GTGGGCGGGCACTACACCAGCAAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGG
260 GCGGGCGGGCACTACATCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* **
12084 TGGGATTAGGCAGTTCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
325 TGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
12149 CAATGGTCCCTTAAGTCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
390 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* *
12214 TTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
455 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
*** *
12279 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGTGTAAAAAACTTCAGC-AAATAACTCGAA
520 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA-AACTCGAA
* *
12343 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGG
584 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * * * *
12408 CAGCAAACTTGTAAATTATCAAATGCTCTTTCAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGAA
649 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
12473 TAGGGGGGCAATATAAGCGCCAAGTACCAGCACCCATTGCATATCATGTGCGCAC-CCCCCC-CC
714 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCC
* * * * * *
12536 CCCCAAATCGCTGGAACCCCAATACCGTCGGTCAGGTTCTCC-AGCGATGCTTCGGCGATGATTC
779 CCCC-AATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGC
* * ** * * *
12600 CCCGAGCAAAAAAAAAAACGGCACCAGCATATGTTCC-AGCCTAGCATGTGCACC
842 CCCGGGCGAAAAAAAAATGGGCACCAGCACATG-CCCGAGCCCAGCATGTGCACC
* *
12654 CGC-A--C-C--T-C--T-CG-T-TT---C--GG--T----T-CG-AT-CTTACACTAGGAATGA
1 CGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* ** * * * * *
12693 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAAGGGCACTCAGCCGGCAAAAAGGGCAGG
66 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCAGG
* * ** * * ** * * *
12758 ATGTGCAAGCTGGGGATCGGTTGGGTCCCCCCCTGCATGCTACCGATCCTACTACTGTAA-CCTT
131 ATGCGCAAGCCGGGGATCGGCCGGGT-CCCCCCTACGTGCTGTCGATCCTACTGCTGCAACCCTC
* * * * * *
12822 GGTCTGATCCAATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACAAGTGG
195 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGG
* * * * * * * * * * * *
12887 GTGGGCGAGCACTA-TTCTGACTAAAAAAGTGGGATGTGTAAGCCATGGATCGATAGGGTGGTAG
260 GCGGGCGGGCACTACATC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
12951 GTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGGCATTTTTATGGCTTGTAAATTCAT
324 GTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
13016 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCATGACGGCTCGTTTTCTATTTTTCATG
389 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
13081 AATTTTGAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGATTTTTGGGCCCA
454 ATTTTTG-AAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
13146 AACTTGGTAGACATGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
518 AACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
13210 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTGTAATGGCTACTG
583 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
13275 CCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGCGTTGTGAGTTCTCGAGGTTTGATGAGGG
648 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
13340 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACAGCCCCCCT
713 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-
** * * * * * **
13405 GCCCCCCAATCATCGGAACCCCAATGCTGTCGATCAGGTTTTTCGGCGATGCTCCGGTGATGGTG
776 GCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
** * *
13470 CCTTGGGC-AAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAACATGTGCACC
841 CCCCGGGCGAAAAAAAAATG-GGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
* ** * *
13525 CGCAACCCTCGATCCAATTCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGA
1 CGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
** * * * * *
13590 ACTCTATATGCCTAAGTCAACCTATGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAAG
66 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCAGG
* ** ** **
13655 ATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGTTGCTGCAACCCTC
131 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCC-CTACGTGCTGTCGATCCTACTGCTGCAACCCTC
* * **
13720 GATCTGGTCCAATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGATGAAACGAGCGG
195 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGG
13785 TCCGGTCCAA
Statistics
Matches: 6423, Mismatches: 850, Indels: 226
0.86 0.11 0.03
Matches are distributed among these distances:
867 1 0.00
868 504 0.08
869 127 0.02
870 19 0.00
871 81 0.01
872 7 0.00
874 1 0.00
875 2 0.00
877 3 0.00
878 1 0.00
879 1 0.00
880 1 0.00
881 2 0.00
882 3 0.00
883 3 0.00
884 2 0.00
885 1 0.00
886 1 0.00
887 125 0.02
888 355 0.06
889 366 0.06
890 143 0.02
891 8 0.00
892 328 0.05
893 616 0.10
894 488 0.08
895 1069 0.17
896 906 0.14
897 736 0.11
898 463 0.07
899 60 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCATAGGGGCAGG
ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCCTACGTGCTGTCGATCCTACTGCTGCAACCCTCG
GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGG
CGGGCGGGCACTACATCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCC
CCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
GGCGAAAAAAAAATGGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
Found at i:13599 original size:26 final size:26
Alignment explanation
Indices: 13548--13600 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13538 CCAATTCGAT
* *
13548 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
* *
13574 CTTAGACTAGGAATGAACTCTATATG
1 CTTACACTAGGAATGAACTCCATATG
13600 C
1 C
13601 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:13989 original size:240 final size:244
Alignment explanation
Indices: 13546--14026 Score: 566
Period size: 240 Copynumber: 2.0 Consensus size: 244
13536 ATCCAATTCG
* *
13546 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTATATGCCTAAGTCAAC
1 ATCTTACACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAAC
* * * * * * *
13611 CTATGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAAGATGCGCAAGCTGGGGATCGAT
66 CCATGAAACGAGCATACGGGCGCTCA-TCAGCC--A-GGGCAAGATGCACAAGCTAGGGATCGAT
* ** **
13676 CGGGTCCCCCTCTGTGTGCTGTCGATCCTGTTGCTGCAACCCTCGATCTGGTCCAATCTTAGACT
127 CGGGTCCCCCTCTGTGTGCTGTCAATCCTACTGCCACAACCCTCGATCTGGTCCAATCTTAGACT
* * * *
13741 GGGAATGAACTCTATATGCCTAAGCCAACCGATGAAACGAGCGGTCCGGTCCA
192 GGGAATGAACTCCATATGCCTAAGCCAACCAACGAAACGAACGGTCCGGTCCA
* * * *
13794 ATCTTACACTAGGAATGAACGT-CGTATGCTTAGATTGGGAATGAACTCCGTATGCTTAAGTCAA
1 ATCTTACACTAGGAATGAAC-TCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
* *
13858 CCCATGAAACGAGCATAC-GG-GCTC-TTAGCC-GGGCATGATGCACAAG-TCAGGGATCGATCG
65 CCCATGAAACGAGCATACGGGCGCTCATCAGCCAGGGCAAGATGCACAAGCT-AGGGATCGATCG
* *
13918 GGTCCCCC-CT-TGCCTGCTGTCAATCCTACTGCCACAACCCTCGGT-TCGGTCCGATCTTAGAC
129 GGTCCCCCTCTGTG--TGCTGTCAATCCTACTGCCACAACCCTCGATCT-GGTCCAATCTTAGAC
* *
13980 TGTGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGGTC
191 TGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAACGAACGGTC
14027 GGGCGGGCAC
Statistics
Matches: 200, Mismatches: 28, Indels: 18
0.81 0.11 0.07
Matches are distributed among these distances:
238 2 0.01
239 4 0.02
240 113 0.56
244 4 0.02
246 4 0.02
247 2 0.01
248 70 0.35
249 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (244 bp):
ATCTTACACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAAC
CCATGAAACGAGCATACGGGCGCTCATCAGCCAGGGCAAGATGCACAAGCTAGGGATCGATCGGG
TCCCCCTCTGTGTGCTGTCAATCCTACTGCCACAACCCTCGATCTGGTCCAATCTTAGACTGGGA
ATGAACTCCATATGCCTAAGCCAACCAACGAAACGAACGGTCCGGTCCA
Found at i:14738 original size:26 final size:26
Alignment explanation
Indices: 14687--14739 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14677 CTGATCTGAT
*
14687 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
* *
14713 CTTAGACTGGGAATGAACTTCATATG
1 CTTACACTGGGAATGAACTCCATATG
14739 C
1 C
14740 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:18637 original size:26 final size:26
Alignment explanation
Indices: 18601--18653 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18591 CTGGTCTGAT
**
18601 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAACAAACTCCATATG
* *
18627 CTTAGACTGGGAACAAACTCCGTATG
1 CTTACACTGGGAACAAACTCCATATG
18653 C
1 C
18654 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAACAAACTCCATATG
Found at i:20388 original size:26 final size:26
Alignment explanation
Indices: 20358--20410 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20348 CCAGTCCGTT
20358 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20384 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20410 C
1 C
20411 CAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20717 original size:887 final size:886
Alignment explanation
Indices: 18474--22652 Score: 4989
Period size: 893 Copynumber: 4.7 Consensus size: 886
18464 CAAACGCTGA
** * * **
18474 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG-CTCCGACGATGGTACCCCGACCAAAAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA-GACTCCGGCGATGGTGCCCCGGGC-AAAAAA
* * * * ** * *
18538 AATATGGCACCAGCACATGCCCGAGCCCAGCATATGCACCCATAACCCTCGATCTGGTCTGATCT
64 AATGTAGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCT
** *
18603 TACACTGGGAATGAACTCCATATGCTTAGACTGGGAACAAACTCCGTATGCCTAAGTCAACCCAT
129 TACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * **
18668 AAAATGAGCG-CGCGGGCGCTCAGCCAGCCAGAGGGGTAGGATGCATAAGCCGGGGATCGACCGG
194 GAAATGAGCGTC-CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGTCGG
* * * *
18732 GTCCCCCCTAC--G-TG-----CTG-T--CACAACCCTTAGTCCGATCCGATCTTAGACTAGGAA
258 GTCCCCCCTACGTGCTGCCATCCTGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAA
* * * * *
18786 TGAACTCCGTATGCCTAAGCCAGCTGACGAAACGAGCGGGCGGGCGAGCATTACGCCGTCCAGAG
323 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAG
* * *
18851 AGACGGGATGTCG-AAGCCGCGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTT
388 AGGCGGGATG-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * * *
18915 CTGCCTTGCCAATGCCATTTTTATGGCTTGTAAATTCGTATAGTGGTCCCTTAAGCCTTCATGTG
452 ATGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
* * * * *
18980 AAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCAGGATTTTTCAAACTTTTTACGGTTTGAT
517 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAG
* * *
19045 ATTTTTTTAAAATTTTTGCAGAAGGAGTTTTGGCCCTAAACTTTGTAGACGTGATCCTTGTACTT
582 ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTT
*
19110 TTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTCGA
647 TTGTTGGCATG--C--AACAA-T-A-C-AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGA
* *
19175 AAAAAGTGTCCCCATTTCAGACACTTT-ATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
704 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGC
*
19239 TCTTTAA-AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGT
769 TCTTTAAGA-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
**
19303 ACCAGCACCCATCGCACATCATGTGCACACA-CCCTTCGCCCCCCAATCGTCGG
833 ACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGCCCCCCAATCGTCGG
* * * *
19356 AACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGA-TCTGGCGATGGTGCCCTGGGCAAAAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA-GACTCCGGCGATGGTGCCCCGGGC-AAAAAA
* * *
19420 AATGCAGCTCCAGCACATG-CTCGAGCCCAGCATGTGCA-CC-C-A-CAT-GG--T--T-CGATC
64 AATGTAGCACCAGCACATGCCT-GAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATC
* * *
19474 TTACA-TTGGAATCAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAA
128 TTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* ** * * * ** **
19538 TGAAATGAGCGTGTGGGCGCTCAACCGGCCAGAGAGGCAGGACGCGTAAGTCGGGGATCGACCGG
193 CGAAATGAGCGTCCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGTCGG
* * * * **
19603 GTCCCCACTACGTGCTGCCGATCCTACTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGA
258 GTCCCCCCTACGTGCTGCC-ATCCTGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGA
* * * *
19668 ATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGCGGGCGGGCACTACGTCGACCAGA
322 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGA
* * **
19733 GAGGCGGGATGCGTAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGTGCATCTTCATATTT
387 GAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
19798 ATGCCATGCCAATGTCAGTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
452 ATGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
* * *
19863 AAGTTTCATGGCAAGACGACTCGTTTTCTATCTTTCATGATTTTTGAAACCTTTTACGGTTTGGG
517 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAG
*
19928 ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTA-TT
582 ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTT
* * * * *
19992 TTTTTGGCATGC-AC-A-A-AAAAACTCAAAGTGTACAAGATTTTGTGACAATTGGAAAAAAGTG
647 TTGTTGGCATGCAACAATACAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTG
* *
20053 TCCCCATTTCAAACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATATCAAATGCTCTTTAAG
712 TCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * *
20118 GGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACA
777 AGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* *
20183 CTTC-CTACATCATGTGCGCACACACCCCCCCACACCCCCAATCGTCGG
842 CATCGC-ACATCATGT--GCACACACCCCCCCGC-CCCCCAATCGTCGG
* * * *
20231 AACCCCATTGTCGCCGGTCAGGTTCTCCGGTGACACTCCGACGATGGTGCCCCGGGCAAAAAGAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAGACTCCGGCGATGGTGCCCCGGGCAAAAA-AA
* * * * * ** *
20296 ATATAGTAGCAGCCCATGCCTGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCAGTCCGTTCTT
65 ATGTAGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTT
* * * *
20361 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCGCG
130 ACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
20426 AAATGAGCGTCCGGGCTCTCAGCCAGCCAGAGTGGCAGGATGCACAAATCGGGGATCGGTCGAGT
195 AAATGAGCGTCCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGTCGGGT
* * * * *
20491 CCCCCCCTATGTGTTGCCAATCCTGCTACTACAACCCTCGGTCCGATCCAATCTTAGACTGGGAA
260 -CCCCCCTACGTGCTGCC-ATCCTGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAA
* * * *
20556 TGAACTCTGTATCCCTAAGCCAACCAACGAAACGAGCGGGC-GACAGGGCACTACGCCGGCCAGA
323 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGGCACTACGCCGGCCAGA
* * ** * *
20620 GAGGCAGGATGCGCAAGCCGTGGATCGGTTTGGTGGTTGGTGGGTTTCGGCACATCTTCATATTT
387 GAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * *
20685 ATGCCGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAACCTTCATGTG
452 ATGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
* * * *
20750 AAGTTTCATGGCAAGACGACTCATTTTTTATCTTTCATGATTTTTGAAACTTTTTACGGGTCT-A
517 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-GGTTTGA
* * * * *
20814 GATTTTTTAAAAATTTTTCCAGAAAGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAAT
581 GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACT
*
20879 TTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCGAAGTGTACAGGA-TTTGTGACCATTTG
646 TTTGTTGGCATG--C--AACAA-T-A-C-AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
* ** * *
20943 AAAAAAGTGTCCCCATTTTAGACACAGTAATGGCTACTGGCAA-CAAATCTGTAAATTCTCAAAT
703 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-AAGCAAACCTGTAAAATCTCAAAT
* * *
21007 GCTCCTTAAGAGGGTGTGAGTTCTCGAGGTTCGACGAGGGATAGGGGGCCAATATAAGGGCCAAG
767 GCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* *
21072 TACCAGCACCCATCGCCCATCATGTGCGCACACCCCCCCGGCCCCCCAATCGTCGG
832 TACCAGCACCCATCGCACATCATGTGCACACACCCCCCC-GCCCCCCAATCGTCGG
* * * * * * *
21128 ATCCCCAATGCCGCCGGTTAAGTTCTCCGATGATG-CTCTGGCGATGGTGCCCCAGGCGAAAAAA
1 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA-GACTCCGGCGATGGTGCCCCGGGCAAAAAAA
* * * * * * *
21192 ATGT-GACACAAGCACATGCCCGAGCCCAGCATGTGC-GCTGCAACCCTCGGTTTGGTTCAATCT
65 ATGTAG-CACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCT
* * * *
21255 CACACTGGGAATCAACTCCGTATGCTTAGCCTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
129 TACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
21320 GAAACGAGCGTCCGGGCGCTCAACTGGCCAGAGGGGCAGGATGCGCAAGTCGAGGATCGGTCGGG
194 GAAATGAGCGTCCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGTCGGG
* * ** ** * *
21385 T-CCCCCTACATGCTGCCAATCCTGCTATCGTAACCCTCAGTTGGGT-CAGATTTTAGACAGGGA
259 TCCCCCCTACGTGCTGCC-ATCCTGCTACCACAACCCTCAGTCCGGTCCA-ATCTTAGACTGGGA
** ** * * * * *
21448 ATGAACTTTGTATATCTAAGCCAACCGACGAAACGAACGGACAGGCGGGCACTAAGCCGGCTAGA
322 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGA
21513 GAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
387 GAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
21578 CTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
452 ATGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
* *
21643 AAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAG
517 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAG
* *
21708 ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATACTTGTATTT
582 ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTT
* *
21773 TTTTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAGGATATTGTGACCATTTGA
647 TTGTTGGCATGC----AACAA-T-A-C-AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGA
* * *
21838 ATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGC
704 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGC
* *
21903 TCTTTAAGAGGGTGTGTGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTA
769 TCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
21968 CCAGCACCCATCACACATCATGTGTACACA-CCCCTCGCCCCCCTGATCGTCGA
834 CCAGCACCCATCGCACATCATGTGCACACACCCCCCCGCCCCCC-AATCGTCGG
* *
22021 AACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTTAGGTGATGGTGCTCCGGCGATGGTGCC
1 AACCCCAATGCCGCCGGTCAGGTTCTCCG--G-TG---A---GA-----CTCCGGCGATGGTGCC
* * * * * * * *
22086 CCGGGTGAAAAAAAATGCAGCACCAACACATG-TTCGTGCCCAGTATGTGCACCCGTAACCCTCA
52 CCGGG-CAAAAAAAATGTAGCACCAGCACATGCCT-GAGCCCAGCATGTGCACCCGCAACCCTCG
* * *
22150 GTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAATTTCGTATGC
115 GTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
22215 CTAAGTCAACCCACGAAATGAGCATACGGGCGCTCAGTCGGCCAGAGTGGCAGGATGCACAAGCC
180 CTAAGTCAACCCACGAAATGAGCGTCCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTC
* * * * * * * ** ** *
22280 GAGGATCGGTCAGATCTCCGCTTCATGCTGGTGATCCTGCTACCACAACCCTTGGTCTGGTCCAA
245 GGGGATCGGTCGGGTCCCCCCTACGTGCT-GCCATCCTGCTACCACAACCCTCAGTCCGGTCCAA
* * *
22345 TCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCCGAGCAC
309 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAC
* * * *
22410 TACGTCGGCCAGAGAGGCGGGATGTGCAATCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCA
374 TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * *
22475 CATCTTCATCTTTTTTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCT
439 CATCTTCAT-ATTTATGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
22540 TAAGCCTTCATGTGAAGTTTGATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGGAAACT
503 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* *
22605 TTTTACGG-TTCAGGATTTTTTTAAAATTTTTTCAGAATGAGTTTTGGC
568 TTTTACGGTTTGA-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
22653 AAGTACCAGC
Statistics
Matches: 2823, Mismatches: 385, Indels: 149
0.84 0.11 0.04
Matches are distributed among these distances:
870 60 0.02
871 231 0.08
872 9 0.00
873 10 0.00
874 13 0.00
875 91 0.03
876 5 0.00
877 4 0.00
878 3 0.00
879 3 0.00
880 5 0.00
881 4 0.00
882 99 0.04
883 317 0.11
884 1 0.00
885 8 0.00
886 108 0.04
887 334 0.12
888 16 0.01
890 1 0.00
891 1 0.00
892 12 0.00
893 417 0.15
894 158 0.06
895 135 0.05
896 31 0.01
897 78 0.03
898 1 0.00
899 146 0.05
900 22 0.01
901 2 0.00
907 19 0.01
908 32 0.01
909 134 0.05
910 155 0.05
911 158 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAGACTCCGGCGATGGTGCCCCGGGCAAAAAAAA
TGTAGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTA
CACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AATGAGCGTCCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGTCGGGTC
CCCCCTACGTGCTGCCATCCTGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGG
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGC
CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTT
TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTGT
TGGCATGCAACAATACAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCACACACCCCCCCGCCCCCCAATCGTCGG
Found at i:23749 original size:26 final size:26
Alignment explanation
Indices: 23711--23763 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23701 CTGGTCTGAT
*
23711 CTTACACTGGGAATGAACT-CCGTATG
1 CTTACACTCGGAATGAA-TACCGTATG
*
23737 CTTAGACTCGGAATGAATACCGTATG
1 CTTACACTCGGAATGAATACCGTATG
23763 C
1 C
23764 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTCGGAATGAATACCGTATG
Found at i:26004 original size:885 final size:883
Alignment explanation
Indices: 24134--26316 Score: 2920
Period size: 885 Copynumber: 2.4 Consensus size: 883
24124 CGTTTTCTAT
* *
24134 GGTTTAGGATTTTTTGT-AAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTACACCTGATC
1 GGTTCAGGATTTTTT-TAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATC
* **
24198 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAATATTTTGTG
65 CTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAG-TAAAAACTCGAAGTGTACAGGATTTTGTG
24263 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
128 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
24328 CTCAAATGCTCTTAAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGTGCCAATATAAG
193 CTCAAATGCTTTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGG-GCCAATATAAG
24393 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGTCAGAA
256 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-CCCCCCAATCGTCAGAA
* * * * *
24458 CCCCAATGGCGCCGATCAGGTTCTCCGACGATGCTCCGAAGATGGTGCACCGAGTGAAAAAAAAA
320 CCCCAATGCCGACGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC-CCGAGCG-AAAAAAAA
*** * * *
24523 TGTGGCACCAGCACATGCTTGAGCATAGCAGGTGCACCCGCAACCCACTGTCCGGTCCGATTTTA
383 TGTGGCACCAGCACATGCCCAAGCATAGCAGGTGCACCCGCAACCCACGGTCCAGTCCGATCTTA
* * * * * *
24588 CATTGGGAATGAACTCCGTATGCTTAGAGTGGGAATGAAGTTCGTATGCCTAAGTCAACCCATGA
448 CACTGGGAATGAACTCCGTATGATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* *
24653 AACAAGTGTGCGGGAGCTCAACCAGCCAGAGGTGCAGGATGCATAAGTCGGGCATCAGTCGGTCC
513 AACAAGCGTGCAGGAGCTCAACCAGCCAGAGGTGCAGGATGC--AA-----GCA-CAGTCGGTCC
** ** ** * * *
24718 CCCCCTGCGTGCTGTCGATCCTACAGCTGCAACCCTCGATTTGGTCTGATCTTAGACTGAAAATC
570 CCCCCTGCGTGCTACCGATCCTACAGCCACAACCCTCGATCCGGTCTCATCTTACAATGAAAATC
** * * * * * * *
24783 AACTTTGTATGCCTAAGCCAACCGACGAAACTAGCGAGCGAGTAGGCACTACATCGGCCAGAGAG
635 AACTCCGCATGCCTAAGCCAACCGACGAAACAAGCGAGCGAGCAGGCACTACACCGACAAGAGAA
* * * ** * *
24848 GTGGGCTGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG
700 GCGGGATGCGCAAGCCACGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * *
24913 CTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
765 CCATGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCGTAAGCCTTCATGTGAAG
* ** * *
24978 TTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAC
830 TGTCATGGCAAGACAACTCGTTTTCCATTTTTCATGATTTTTAAAACTTTGTAC
* * *
25032 GGTTC-GAGATTTTTTTAAAATTTTTTCAAAAGGAGTTGTGGCCCCAAACTTGGAAGACGTGATC
1 GGTTCAG-GATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATC
25096 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTGAAAAACTCGAAGTGTACAGGATTTTGTG
65 CTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGT-AAAAACTCGAAGTGTACAGGATTTTGTG
* *
25161 ACCATTTGAAATAAGTGTCCCCGTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
128 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
25226 CTCAAATGCTTTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGACCAATATAAG
193 CTCAAATGCTTTTTAAGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGG-CCAATATAAG
* *
25291 GGCCAAGTACTAGCACCCATCACACATCATGTGCGCACAGCCCCCCCGCCCCCCAATCGTCAGAA
256 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGCCCCCCAATCGTCAGAA
* * *
25356 CCCTAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCTTG-GCGAAAAAAAA
320 CCCCAATGCCGACGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC--GAGCGAAAAAAAA
* * * * *
25420 TGTGGCACCAGCACATGCCCAAGCCTAGCATGTGCACTCGCAACCCTCGGTCCAGTCTGATCTTA
383 TGTGGCACCAGCACATGCCCAAGCATAGCAGGTGCACCCGCAACCCACGGTCCAGTCCGATCTTA
*
25485 CACTGGGAATGAACTCCGTATTATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
448 CACTGGGAATGAACTCCGTATGATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
** * * * *
25550 AATGAGCGTGCAGGCGTTCAACCGGCCAGAGAG-GCAGGATGC-A-CA-AG-CGGTCCCCCCTTG
513 AACAAGCGTGCAGGAGCTCAACCAGCCAGAG-GTGCAGGATGCAAGCACAGTCGGTCCCCCCCTG
* * ** *
25610 CGTGCTACCGATCCTCCTA-CCACAACCCTTGATCCGGTCTCATCTTACAATGGGAATGAACTCC
577 CGTGCTACCGATCCTAC-AGCCACAACCCTCGATCCGGTCTCATCTTACAATGAAAATCAACTCC
* * * * **
25674 GCATGCCTAAGTCAACCGATGAAACAAGCG-GACGGGCGGGCACTATGCCGACAAGAGAAGCGGG
641 GCATGCCTAAGCCAACCGACGAAACAAGCGAG-CGAGCAGGCACTACACCGACAAGAGAAGCGGG
25738 ATGCGCAAGCCACGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
705 ATGCGCAAGCCACGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
25803 ACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCGTAAGCCTTCATGTGAAGTGTCA
770 ACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCGTAAGCCTTCATGTGAAGTGTCA
* *
25868 TGGCAAGACAACTTGTTTTCCATTTTTCACT-ATTTTTGAAACTTTGTAC
835 TGGCAAGACAACTCGTTTTCCATTTTTCA-TGATTTTTAAAACTTTGTAC
* * *
25917 GGTTCAGGATTTTTTTAAAATTTTTTCAGAAGTAGTTTTGGCCCCAAACTTGGTAGACTTGATCC
1 GGTTCAGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCC
* * * *
25982 CTGTATTTTTTCTGGCATGCAC-AAAAAATTCAACTAAAAACTCGAAGTTTGCAGGATTTTGTGA
66 TTGTATTTTTT-TGGCATGCACAAAAAAATTC-AGTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * *
26046 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGCAAACATGTAAAATC
129 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
26111 TCAAATGCTTTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
194 TCAAATGCTTTTTAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGA-AAGGGGCCAATATAAGG
* * ** *
26176 GCCAAGTACCAGCGCCCATGGCACATCAT-TGCGCACA-CCCCCCGCCCCCTTTGATCG-CTGGA
257 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCC--CAATCGTC-AGA
*
26238 ACCCCAATGCCGACGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGTGCGAAAAAAAA
319 ACCCCAATGCCGACGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGAGCGAAAAAAAA
26303 TGTGGCACCAGCAC
383 TGTGGCACCAGCAC
26317 TTTAATGGCT
Statistics
Matches: 1142, Mismatches: 120, Indels: 61
0.86 0.09 0.05
Matches are distributed among these distances:
881 12 0.01
882 2 0.00
883 84 0.07
884 181 0.16
885 353 0.31
886 5 0.00
888 2 0.00
894 1 0.00
897 167 0.15
898 326 0.29
899 9 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (883 bp):
GGTTCAGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCC
TTGTATTTTTTTGGCATGCACAAAAAAATTCAGTAAAAACTCGAAGTGTACAGGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTTTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCAGAACCCCAA
TGCCGACGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGAGCGAAAAAAAATGTGGCAC
CAGCACATGCCCAAGCATAGCAGGTGCACCCGCAACCCACGGTCCAGTCCGATCTTACACTGGGA
ATGAACTCCGTATGATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
TGCAGGAGCTCAACCAGCCAGAGGTGCAGGATGCAAGCACAGTCGGTCCCCCCCTGCGTGCTACC
GATCCTACAGCCACAACCCTCGATCCGGTCTCATCTTACAATGAAAATCAACTCCGCATGCCTAA
GCCAACCGACGAAACAAGCGAGCGAGCAGGCACTACACCGACAAGAGAAGCGGGATGCGCAAGCC
ACGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGACAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCGTAAGCCTTCATGTGAAGTGTCATGGCAAGACAA
CTCGTTTTCCATTTTTCATGATTTTTAAAACTTTGTAC
Found at i:26631 original size:26 final size:26
Alignment explanation
Indices: 26602--26654 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26592 CCGGTCCAAT
*
26602 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
26628 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
26654 C
1 C
26655 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:27532 original size:26 final size:26
Alignment explanation
Indices: 27496--27548 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27486 TCTGGTTAAT
27496 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
27522 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
27548 C
1 C
27549 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:28416 original size:26 final size:26
Alignment explanation
Indices: 28387--28439 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28377 CCGGTCCGAT
*
28387 CTTACTCTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
28413 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
28439 C
1 C
28440 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:28674 original size:891 final size:887
Alignment explanation
Indices: 26314--29299 Score: 3704
Period size: 891 Copynumber: 3.4 Consensus size: 887
26304 GTGGCACCAG
*
26314 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
26379 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACTAGCACCCATCGCCCATCAT
66 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * ** *
26444 GTGCGCACACCCCCCGCCCCCCAATCATCGAAACCACAATGCAACCGGTCAGGTTCTGCTATGAT
131 GTGCGCACA-CCCCCACCCCCCAATCACCGAAACCCCAATGCCGCCGGTCAGGTTCT-C-AGGAT
* * * * *
26509 GCTCCAGAGATGGTGCCCCGAGCAAAAACAAATATGGCACCAGCACATGCCTGAGCCCAACATGT
193 GCTCCGGCGATGGTGCCCCGAGCAAAAA-AAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* *
26574 ACACCTACAACCCTCGGTCCGGTCCAATCTTACATTGGGAATGAACTCCGTATGCTTAGACTGGG
257 ACACCTACAACCCTCGATCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
26639 AATGAAC-TCTGTATGCCTAAGTCAACCCATGAAAA-GAGCATGCGGGCGCTCAGCCAGCAAGAG
322 AATGAACTTC-GTATGCCTAAGTCAACCCA-CAAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAG
* * ** * * **
26702 TGGTAGGATCCGTAAGCCGGGGATCGATCGGGTCCCCCCTGTGTGCTGAC-GATCCTGCTACTGT
385 GGGTAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCATGTGT-CTG-CTGATCCTACTACCAT
* * * *
26766 AACCCTTGGTCCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCCTATGCCAACTGACGAAA
448 AACCCTCGGTCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACTGACGAAA
* * * * **
26831 CGAGCGGGCAGGCGGGCACTACACCGGCCAGAGAGGCAGGATCCGCAAGTTGTGGATCGATAGGG
513 CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
* *
26896 TGCTAGGTGGGTTTAGACACATCTTCATATTTCTATCC-TGCCAATGCCATTTTTATGGCTTGTA
578 TGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TCCATGCCAATGCCATTTTTATGGCTTGTA
*
26960 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATT
641 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTATATT
* * *
27025 TTTCACGGTTTTTAAAACTTTTTACGGTTCAGGATTTTCTTAAAATTTTTTGAAAAAGGAGTTTT
706 TTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTT-AAGAAGGAGTTTT
* * * * * *
27090 GGACCCAAACTTTGTAGACATGATCCGTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAA
770 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAA
*
27155 AACTCGAAGTGTACAGGATTTTATGACCATTTGAAAAAAATGTCCCCATTTCAGA
835 AACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAATGT-CCCATTTCAGA
* * *
27210 CACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGAGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
27275 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCAT
66 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * * * * * * *
27340 GTGCGCACACCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGATCAAGTTTTTTGACGATG
131 GTGCGCACACCCCCACCCCCCAATCACCGAAACCCCAATGCCGCCGGTC-AG-GTTCTCAGGATG
* *
27405 CTCCGACGATGGTGCCCCGAGCAAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
194 CTCCGGCGATGGTGCCCCGAGC-AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTA
* * * * *
27470 CACTTACAACCCTCGGTCTGGT-TAATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGA
258 CACCTACAACCCTCGATCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * ** * * ** *
27534 ATGAACTCCGTATGCCTAAGTCAACACATGAAACGAACGTGTGGGCGCTCAGCTGGCCAGAAGGG
323 ATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGG
* * *
27599 TAGGATGCACAAGCCAGGGATCGGTCGGGTCCCCCCTATGTG-CTG-TCGATCCTACTACCACAA
388 TAGGATGCACAAGCCGGGGATCGATCGGGT-CCCCC-ATGTGTCTGCT-GATCCTACTACCATAA
* * * * * * * *
27662 CCCTCAGT-TCGGTCCGTTCTTAGATTGGCAATGAACTCCGTAAGCTTAAGCCATCCGACGAAAC
450 CCCTCGGTCT-GGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACTGACGAAAC
* * * * *
27726 GAGCGGGCGGGCGAGCACTACGTCAGCCAAAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGT
514 GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * *
27791 GGTAAGTGTGTTTAGGCACATCTTCATATTTTTGCCACGCCAATGCCATTTTTATGGCTTGCAAA
579 GGTAGGTGGGTTTAGGCACATCTTCATATTTTT-CCATGCCAATGCCATTTTTATGGCTTGTAAA
* * * *
27856 TTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGATGACCCGTTTTCTATTTT
643 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTT
* * ** ** * *
27921 TTACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTTTAATTTTTTCAGAAGGCA-TTTTAG
708 TCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTAAGAAGG-AGTTTTGG
* * *
27985 CCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCTCAAAAAAATTTAACT-AAAA
772 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAA
*
28049 CTCGAAGTGTACAGGATTTTGTGACTATTTGAAAAAAGTGTCCCAATTTCAGA
837 CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA-TGTCCC-ATTTCAGA
* *
28102 CACTTTAGTGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
** * * * *
28167 TTGAGGTTTGATGTGGGATAGGGGGCCAATATAATGGCCAA-TACCAGCAGCCATCGCACATTAT
66 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * ** ** *
28231 TTGTGCATGGCCCCC-CCCCCCAATTGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCAAGGAT
131 GTGCGCA-CACCCCCACCCCCCAATCACCGAAACCCCAATGCCGCCGGTCAGGTTCT-C-AGGAT
* * * * *
28295 GCTCCGGCGATGGTGCCCCGAACGAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTG
193 GCTCCGGCGATGGTGCCCCGAGCAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTA
* * *
28360 CACCCACAACCCTCGATCCGGTCCGATCTTACTCTGGGAATGAACTCCGTATGCTTAGACTGGGA
258 CACCTACAACCCTCGATCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
28425 ATGAACTTCGTATGCCTAAGTCAACCCACAAAACGCGCGTGCGGGCGCTTAGCCAGCCAGAGGGG
323 ATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGG
* *
28490 CAGGATGCACAAGCCGGGGATC-AGCTGGGTCCACCCATGTGTACTGCTGATCCTACTACCATAA
388 TAGGATGCACAAGCCGGGGATCGATC-GGGTCC-CCCATGTGT-CTGCTGATCCTACTACCATAA
* * * * *
28554 CCCTCGGTCTGGTCTGATCATACACTGGGAATGAACTCCGTATGCCTAAG-CAACTGACAAAACG
450 CCCTCGGTCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACTGACGAAACG
* * ** * * *
28618 AGCAGGCGGGTGGGCACTACGCCGGTTAGAGAGGTGGGATGCGCAAGCCATGGATCGATAGGGTA
515 AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
28683 GTCGGTGGGTTTAGGCACATCTTCATATTTTTTTCATGCCAATGCCATTTTTATGGCTTGTAAAT
580 GTAGGTGGGTTTAGGCACATCTTCATA-TTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
28748 TAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTT
644 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTT
* * * * *
28813 CATGATTTTTAAAACTTTTTATGGTTCAGGATTTGTTTAAAATTTTTTTAGAAGGAGTTCTGGCC
709 CACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTAAGAAGGAGTTTTGGCC
*
28878 CCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTTCAGCTAAAAAC
774 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTT-AGCTAAAAAC
*
28942 TCGATA-TGTACAGGATTTTGTGACCA-TTG---GAA----CCATTTCAGA
838 TCGA-AGTGTACAGGATTTTGTGACCATTTGAAAAAATGTCCCATTTCAGA
* * *
28984 CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGTGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * * * *
29049 TCGAGATTTGATGAGGGATAGGGGACCAACATAAGGGCCAAGTACCAGCACCCCTCACACATCAC
66 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
29114 GTGCGCACACACCCC-CGGCCCCCAATCACCGGAACCCCGATGCCGCCAGTCAGGTTCTCTGGCA
131 GTGCGCACAC-CCCCAC--CCCCCAATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCAGG--
* ** * *
29178 ATGCTCCGGC-ATGGTGCCCCGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCAAGCCTAGCA
191 ATGCTCCGGCGATGGTGCCCCGAGC--AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* ** * * *
29242 TGCACACCTGTAACCCTC-AGTCCGATCCGATCTTACACTGGGAATGAACTCTGTATGC
254 TGTACACCTACAACCCTCGA-TCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGC
29300 CTAAGTCAAC
Statistics
Matches: 1796, Mismatches: 255, Indels: 88
0.84 0.12 0.04
Matches are distributed among these distances:
882 104 0.06
883 32 0.02
884 13 0.01
885 45 0.03
886 83 0.05
888 2 0.00
889 3 0.00
890 77 0.04
891 483 0.27
892 237 0.13
893 70 0.04
894 387 0.22
895 115 0.06
896 142 0.08
897 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (887 bp):
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCACCCCCCAATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCAGGATGCT
CCGGCGATGGTGCCCCGAGCAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTACAC
CTACAACCCTCGATCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTAG
GATGCACAAGCCGGGGATCGATCGGGTCCCCCATGTGTCTGCTGATCCTACTACCATAACCCTCG
GTCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGG
CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCACGATT
TTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTAAGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTG
TACAGGATTTTGTGACCATTTGAAAAAATGTCCCATTTCAGA
Found at i:30902 original size:26 final size:26
Alignment explanation
Indices: 30873--30925 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30863 CCGGTCCGAT
30873 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
30899 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
30925 C
1 C
30926 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:31632 original size:26 final size:26
Alignment explanation
Indices: 31603--31655 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31593 CCGGTCTGAT
31603 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
31629 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
31655 C
1 C
31656 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:32547 original size:26 final size:26
Alignment explanation
Indices: 32496--32548 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32486 CTGGTCCGAT
* *
32496 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
32522 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
32548 C
1 C
32549 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:34042 original size:905 final size:896
Alignment explanation
Indices: 31086--35340 Score: 5412
Period size: 905 Copynumber: 4.7 Consensus size: 896
31076 TCCGTATGCC
* * * *
31086 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTACTTTTCATGATTTTTGAAGCT
1 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* ** * *
31151 TTTTACGATTCATGATTTTTTTAAAATTTTGTT-AGAAGGACTTTTGGCCCTAAACTTGGTAGAC
66 TTTTACGGTTCGGGATTTTTTTAAAATTTT-TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * *
31215 GTGAT-CTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAGAACTCAAAGTGTACTGGAT
130 GTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
* * * *
31279 TTTGTGACCATTTGAAAAATGTGTCCCCATTTCGGACACTTTAACGGCTACTAGCAGCAAACCTG
195 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
31344 TAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
260 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
31409 TCTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCGCCCCTCAATTGC
325 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGT
* * * * *
31473 CGGAACCCCAATGCCGCCGGTTAGGTTCTCTGGTGATGCTCCGGCGATGGTGCCCTGGGTGAAAA
390 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAA
** * * * * ** *
31538 AAAATATGACACCAGCACATGCCCAAGCCTAGGATGTGCACTCATAACCCTCGGTCCGGTCTGAT
455 AAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCTGGTCTGAT
* *
31603 CTTACACTAGGAATGAAC-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACC
520 CTTACACTGGGAATGAACTTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* ** * * ** * * *
31667 CATAAAACGAGCGTGCGGTTGCTTAGCTGGCCAGAGGGGCAGGATGTGCAAGTCGAGGATTGGCC
585 CATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCC
* * * * * * * * * *
31732 GAGTCCCCCCTATGTGCTATCGATCCTAATACCACAACCATCGGTCTGATCTGAACTTAGACTGG
650 GGGTCCCCCCTACGTGCTATCGATCTTGATGCCACAACCCTCAGTCTGGTCAGATCTTAGACTGG
** * *
31797 GAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGGCA
715 GAATGAACTCCGTATGCCTAAG-CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCA
*
31862 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
779 GAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
31927 TTCTACCATCCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCT
844 TTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
**
31980 TAAGCCTTCATACGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
1 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* ** *** *
32045 TTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAGTTGGAGTTTTGGATACAAACTTGGTAGATG
66 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
32110 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAATTGAAGTGTACAGGATT
131 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
32175 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
196 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* ** *
32240 AAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACAGATAGGGTGCCAAT
261 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * **
32305 ATAAGGGCCAAGTACCAGCACCGATCGCACATCATG-GTGCACA-CCCCCCGCCCCCCAATCACC
326 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTC
** *
32368 GGAACCCCAATGCCATCGGTCAGGTTCTACGGCGATGCTCCGGCGATGGTGCCCCGGGCG-AAAA
391 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAAA
* * * * *
32432 AAATGCAGCACCAGCACATGCCTGAGCCTAGCATGTGCACCCGTAACCATCGGTCTGGTCCGATC
456 AAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCTGGTCTGATC
* *
32497 TTACACTGGGAATGAACTT-CGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACTC
521 TTACACTGGGAATGAACTTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
32561 ACGAAACAAGCGTGCGGGTGCTCAACCGGCCAGA-GGGCAAGGATGCGCAA-CCGAGGATCGGTC
586 ATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-AGGATGCACAAGCCGGGGATCGGCC
* * * * * * * * * * *
32624 GGGTCCCCCTTTCGTTCTATAAGAGC---ACG-CGCAA-CCTAAAG-CCGGTCCGATCTTAGCCT
650 GGGTCCCCCCTACGTGCTAT-CGATCTTGATGCCACAACCCT-CAGTCTGGTCAGATCTTAGACT
* * * * * * **
32683 -GGAATGAACTGATCCATATGCCTAAACCACCCAC-AAACGAGTGGGTGGGTGCGGGCACTA-AT
713 GGGAATGAAC---TCCGTATGCCTAAGCAACCGACGAAACGAGCGGG-CGG-GCGGGCACTACGC
* * *
32745 CGTCTAGAGCGGC-GGATGC-TAAGCCGTGGATCGATAGGGTGGTAAGGTGGGTTTAGGCACATC
773 CGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGT-AGGTGGGTTTAGGCACATC
* * *
32808 TTCCATCATTTCT-GCATGGCTATGCCATTTTTAATGGCTTGTAAATTCATACAATGGTCGCCT
837 TT-CAT-ATTTCTACCATGCCAATGCCATTTTT-ATGGCTTGTAAATTCATACAATGGTC-CCT
* *
32871 TAAGCC-TCATGTGAAAGTTTCATGGCCAAGACGACTCGTTATTGTATTTTTCACGATTTTCAAA
1 TAAGCCTTCATGTG-AAGTTTCATGG-CAAGACGACTCGTT-TTCTATTTTTCACGATTTTTAAA
** *
32935 ACTTTTTACGGTTCGAAATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
63 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
33000 ACGT-ATGCTTATTTTTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
128 ACGTGAT-CCT-TGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
33064 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGCCACTGTAATGGCTGCTGGCAGCAAA
191 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
33129 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGG
256 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
33194 CCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACAACCCCCCCGCCCCTCC
321 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGCCCC-CC
* * * ** * *
33259 AATCGTCGGAACCTCAATGCCGTCGGTTAGGTTCTCCAACGATGCTTCGGTGATGGTGCCCCGGG
384 AATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGG
* * *
33324 TGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTCCACCCACAACCCTCGGTCTGG
449 CGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCTGG
* * *
33389 TCTGATTTTTCACTGGGGAATGAGCCACTTTCCGTCATGCTTAGACTGGGAATGAAACTCTGTAT
514 TCTGATCTTACACT-GGGAATGA---AC-TTCCGT-ATGCTTAGACTGGGAATG-AACTCCGTAT
*
33454 GCCTAAGTC-ACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG
572 GCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAG
* * * * * * * *
33518 CCGGGGATCGACCGGGTGCCCCCCTACGAGCTGTTGATCTTGTTGCTACAACCCTCGGTTTGGTC
637 CCGGGGATCGGCCGGGT-CCCCCCTACGTGCTATCGATCTTGATGCCACAACCCTCAGTCTGGTC
* *
33583 AGATCTTAGACTAGGG-ATGAACTCTGTATGCCTAAGGCAACCGACGAAATGAGCGGGCGGGCGG
701 AGATCTTAGACT-GGGAATGAACTCCGTATGCCTAA-GCAACCGACGAAACGAGCGGGCGGGCGG
* * ** *
33647 GCACTACGTCGGCCATAGAGGTAGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTA
764 GCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * * *
33712 GGCATATCTTCATATTTCTACCATGTCAATGCCATTTTTATGGCTTGCAAGTTCGTACAATGGTC
829 GGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
33777 CCT
894 CCT
* * * *
33780 TAAGGCTTCAT-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGATACT
1 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* *
33844 TTTTACGGTTCGGGATTTTTTTAAACTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATG
66 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
33909 TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
131 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
*
33974 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGT
196 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
34039 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
261 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
34104 ATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGTAAACCCCTCCCCGCCCCGCCAATG
326 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCCGCCCC-CCAATC
* * * * *
34169 GTCGAAAGCCCAATGTCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAGGCGAA
388 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAA
* * * ** * * * *
34234 AAAAAATACAGCACCAACACATGCCTAAGCCAAGCATGTGCACCTGCAACCCTCGGACCGGTCTG
453 AAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCTGGTCTG
* * *
34299 ATCTTACACTGGGAATTAACTT-CGTATGCTTAGAGTAGGAATGAACTCCGTATGCCTAAGTCAA
518 ATCTTACACTGGGAATGAACTTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
34363 CTCATGAAACAAGCATGCGGGCGCTCAGCCGACTAGAGGGGCAGGATGCACAAGCCTGGGATTGG
583 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGG
* * * * *
34428 CTGCGTCCCCCCTGCGTGCTATCGATCTTGCTGCCACAACCCTCAGTCATGTTCA-ATCTTAGAC
648 CCGGGTCCCCCCTACGTGCTATCGATCTTGATGCCACAACCCTCAGTC-TGGTCAGATCTTAGAC
*
34492 TGGGAATGCAACTCCGTATGCCCTAAGCTAACCGACGAAAACGAG-TGGCGGGCGGGCCACTCAC
712 TGGGAATG-AACTCCGTATG-CCTAAGC-AACCGACG-AAACGAGCGGGCGGGCGGG-CACT-AC
* *
34556 GCCGGCCAGAGAGGCGGGATTGCGGCAAAGCCGTTGGATTG-TA-GGTGGTAGGTGGGTTTAGGC
771 GCCGGCCAGAGAGGCGGGA-TGC-G-TAAGCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
34619 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCT
832 ACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
34684 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACT
1 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * * * *
34749 TTTTATGGTTTGGGATTTTTTTAAAATTTTTGCAGAAGGAGTTTTGACCCCAAACTTGGTAGACA
66 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
34814 TGATCCTTTTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
131 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
34879 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
196 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
34944 AAAATCTCAAATGCTCTTTACGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
261 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
** * * *
35009 ATAAGGGCCAAGTACCAGCACCCATCGCACATCACATGCGCACACCCCCTAC-CCCCCAAATCAT
326 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGCCCCCCAATCGT
* * * * **
35073 CGGAACCCCAATGCCGCTGGTCAGGTTCTCTGACGAAGCTCCGATGATGGTGCCCCGGGCGAAAA
390 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAA
* * * * *
35138 AAAATGCGACACCAGCACATGCCCGAGCC-CGTCATGTGCACCCGCAACCCTTGGTCTAGTCCGA
455 AAAATGCGGCACCAGCACATGCCCGAGCCTAG-CATGTGCACCCGCAACCCTCGGTCTGGTCTGA
* * * * * ** *
35202 TCTTACACTAGGAATGAAC-TCCATATGCTCAGACTAGGATTGAACTCCGTACACCTAAGTTAAC
519 TCTTACACTGGGAATGAACTTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
35266 CCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGACGGGTAGGATGCACAAGCCGGGGATCGGC
584 CCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGC
35331 CGGGTCCCCC
649 CGGGTCCCCC
35341 TTTGCATGCT
Statistics
Matches: 2893, Mismatches: 396, Indels: 136
0.84 0.12 0.04
Matches are distributed among these distances:
887 32 0.01
888 51 0.02
889 40 0.01
890 57 0.02
891 20 0.01
892 45 0.02
893 239 0.08
894 394 0.14
895 212 0.07
896 1 0.00
897 14 0.00
898 123 0.04
899 161 0.06
900 34 0.01
901 14 0.00
902 242 0.08
903 11 0.00
904 94 0.03
905 567 0.20
906 278 0.10
907 54 0.02
908 22 0.01
909 10 0.00
910 55 0.02
911 40 0.01
912 51 0.02
913 30 0.01
914 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTC
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAAA
AAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCTGGTCTGATC
TTACACTGGGAATGAACTTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCCG
GGTCCCCCCTACGTGCTATCGATCTTGATGCCACAACCCTCAGTCTGGTCAGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGA
GAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
Found at i:35603 original size:158 final size:158
Alignment explanation
Indices: 35232--35648 Score: 419
Period size: 159 Copynumber: 2.6 Consensus size: 158
35222 CCATATGCTC
* * * *
35232 AGACTAGGATTGAACTCCGTACA-CCTAAGTTAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
1 AGACT-GGAATGAACTCCGTA-AGCCTAAGTCAACCCACGAAACGAGCGGGCGGGCGCTCAGCCG
* * * * *
35296 GCCAGACGGGTAGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTTTGCATGCTGCCAATCCAG
64 GCCAGA-AGGCAGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCAATCCAG
* * *
35361 CTGCTGCAACCCTCGATCCGATCTGATTCTT
128 CTACCGCAACCCTCGATCCGATCCGATTCTT
* * * * *
35392 AGACTTGAATGAACTCCGTAAGCCTATGTCAACCCATGAAACAAGCGGACGGGCGCTCAGCCGGC
1 AGACTGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGGGCGGGCGCTCAGCCGGC
* * * * * *
35457 CAGAAGGCCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCC-CTACGTGCTGTCGATCCTGCT
66 CAGAAGG-CAGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCAATCCAGCT
* * *
35521 ACCGTAACCCTC-AGTCTGGTCCGA-TCTT
130 ACCGCAACCCTCGA-TCCGATCCGATTCTT
* * * *
35549 AGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
1 AGACT-GGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGGGCGGGC--GCTC-A-G
* *
35614 CCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATC
61 CCGGCCAGA-AGGCAGGATGCACAAGCCGGGGATC
35649 AATAGGGTGG
Statistics
Matches: 210, Mismatches: 38, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
157 10 0.05
158 75 0.36
159 84 0.40
160 8 0.04
161 1 0.00
162 29 0.14
163 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (158 bp):
AGACTGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGGGCGGGCGCTCAGCCGGC
CAGAAGGCAGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCAATCCAGCTA
CCGCAACCCTCGATCCGATCCGATTCTT
Found at i:38561 original size:893 final size:888
Alignment explanation
Indices: 36268--40874 Score: 5467
Period size: 891 Copynumber: 5.2 Consensus size: 888
36258 TCTTACATTG
* * * * * *
36268 GGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGCCAGAA
1 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * *** *** * *
36333 GGGCAGGATGCACAAACCGAGGATCGATCGGGTCCCCCCTACGTGCTGTTGATCCTACTATCGCA
66 GGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGTATGCTGCCAATCCTGCTACCGCA
* * *
36398 ACCCTCGATCCT-GTCTGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGCCAACCA-ATGAA
131 ACCCTCGAT-CTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CAGACGAA
* * * *
36461 ACGAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGG
194 ACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGG
* * *
36526 GTGGTAGGTGGGTTTACGCACATCTTCATATTTCTACCTTGCCAATGCCATTTTGT-TGGCTTGC
259 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTT-TATGGCTTGT
* *
36590 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTAT
323 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** *
36655 TTTTCACA-ATTTTCAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTT
388 TTTTCA-AGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTT
*
36719 TTGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
452 TTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
36784 AAAGTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAAT
517 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
36849 GGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATG-GCTTCTCGAGGTT
582 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG-TTCTCAAGGTT
* * * * *
36913 TGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACTAGGACCCATCGCATATCATGTGTGCAC
646 TGATGAGGGATA-GGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGTGCAC
* * * * *** *
36978 ACCCCCCGCCCCCCATTCACTGGAACCCCAATGCCGTCGGTCATGTTCTCCGGTGTTGCTCCGGT
710 ACCCCCCGCCCCCCAATC-CCGAAACCCCAATGCCGCCGGTCA-GTTCTCCAACGATGCTCCGGT
** ** * * * * *
37043 GATGGTGCCCCAGGCAAAAAAAAATGCAGCACCAGAACATACCCAAGCCAAGCATGTGCACTCGC
773 GATGGTGCCCC-GGGGAAAAAAAATGTGGCACCAGCACAT-GCCGAGCCCAGCATGTGCACCCGC
** *
37108 AACCCTCGATCCATTCTGATCTTACATTGGGAATGAACTCCATATGCTTAGACT
836 AACCCTCG-TCCGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACT
* *
37162 GGGAATGAACT-TCGTATGCCTAAGTCAACCCACGAAACAAGCGTGAGGGCACTCAGCCGGCCAG
1 -GGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAG
* * *
37226 AGGGGAAGGATGCGCAAGCCGGGGATCGA-CTGGGTCCCCCC-CTACGTGCTGCCAATCCTACTA
64 AGGGGCAGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCCTGTA--TGCTGCCAATCCTGCTA
* * * ** *
37289 CTGCAACCCTCGAT-TCGGTCTGATCTTAGACTGGGAATGAATTTTGTATGCCTAAGCCAACCGA
126 CCGCAACCCTCGATCT-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGA
* * ** *
37353 CGAAACGA----ACGGGCGGGCACTACGCCAGCCAGAGAGGCCG-GATGCGCAA-AAGTGGTTCG
190 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGG-CGAGATGCGCAAGCCGTGGATCG
* * * *
37412 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCCTACCAATGCCATTTTTATGGC
254 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGC
* *
37477 ATGTAAATTCATACAATGGTCCCTTAAGCATTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
319 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
37542 CTATTTTTCACGTTTTTTGAAACTTTTTTCGGTTCGGGATTTTTTGAAAATTTTTTCAGAAGGAG
384 CTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAG
* * * * *
37607 TTTTGGCCCAAAACTTGGTAGACGTGATCATTGTATTTTTTTTGGCATGCACAAAAAAATTCAGG
449 TTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
37672 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTT
514 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
37737 AATGCCTACTGGCAGCAAACCTGTAAAACCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
579 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
* * * * * *
37802 TTTGATGAGGGAGAGGCAGCCAATATAAGGGTAAAGTACCAGCACCCATCACACATCATGTGCGT
644 TTTGATGAGGGATAGG-GGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGTGC
* *
37867 ACACCCCCCGCCCCCCAATCGTCGAAACGCCAATGCCGCCGGTTCAGTTCTCCAACGATGCTCCG
708 ACACCCCCCGCCCCCCAATC-CCGAAACCCCAATGCCGCCGG-TCAGTTCTCCAACGATGCTCCG
* * * *
37932 GTGATGGTGCACTGGGTGAAAAAAAATGTGGCACCAGCACATGCCGAGCCTAGTATGTGCACCCG
771 GTGATGGTGCCCCGGG-GAAAAAAAATGTGGCACCAGCACATGCCGAGCCCAGCATGTGCACCCG
* * * * * * *
37997 TAACCTTCAGTTCGGTCCGATCTTCCACTGGGAATGAACTTCGTATGCTTAGACT
835 CAACCCTC-GTCCGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACT
* * *
38052 GTGAATGAACTCTTTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCTGGCCAGA
1 G-GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGA
* * *
38117 GGGGTAGGAT-CGCAAGCCGGGGATCGATCGGGTCCCCCCTGTATGCTGCCAATCCTGTTACCAC
65 GGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGTATGCTGCCAATCCTGCTACCGC
* ** *
38181 AACCCTCGATCTAATCTGATCTTAGACTATGAATGAACTCCGTATGCCTAAGCCAACAGATGAAA
130 AACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAA
** * * * * *
38246 CGAATGGGTGGGCGAGCACTACGTCGGTCAGAGAGGCGAGATGCACAAGCCGTGGATCGATAGGG
195 CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGG
*
38311 TGGTTGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAA
260 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAA
* * *
38376 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAACTTTCATCGCAAGATGACTCGTTTTCTATTA
325 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT-
* ** *
38441 TTT-AAGATTTTTGAAACCTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTT
389 TTTCAAGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTT
* *
38505 ACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
454 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
38570 ACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
519 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
38635 CTACTGGCAGCAAACCTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
584 CTACTGGCAGCAAACC-TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
38700 ATG-GGGATAGGGGCCAATATAAGGGC--AGTACCAGCACCCATCG-ACCATCA--TGTGCACAC
648 ATGAGGGATAGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCA-CATCATGTGTGCACAC
* * * * * * *
38759 ACCCCCGCCCCCCAATCTCG-GA--CCAA-GCTGCAGGTTCAG----CGATC--TGCT-CGAGCG
712 -CCCCCGCCCCCCAATCCCGAAACCCCAATGCCGCCGG-TCAGTTCTCCAACGATGCTCCG-GTG
* * *
38813 ATGGTGCTCCAGGGAACAAAAAA-ATGGCACCAGCACAT-CCTGAGCCCAGC---TGCA-CCG-A
774 ATGGTGCCCCGGGGAA-AAAAAATGTGGCACCAGCACATGCC-GAGCCCAGCATGTGCACCCGCA
***
38871 A--CTCGTTTTGT-T-ATCTT-CACTGGGAATG-ACTCCATA-GCTTAGACT
837 ACCCTCGTCCGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACT
*
38916 GGAATGAACT-TGTAT---T--GTCAACCCACGAAA-AA---TGCAGGG-ACTCAGCCGGCCAGA
1 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGC-GGGCGCTCAGCCGGCCAGA
* * ** * *
38970 GGGGCA-G-T-AGCAA-AC-GGGATCGACTC-GGTCCCATCTG-A--C-GTCTAT-CTGCT---G
65 GGGGCAGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCCTGTATGCTGCCAATCCTGCTACCG
* * * * *
39021 CAACCCTTG-TCTAATCTTATC-TAGACTGGAAAATG-A-TCC--ATG-CTAAGCCAA-TGA-GA
129 CAACCCTCGATCTAGTCTGATCTTAGACTGG-GAATGAACTCCGTATGCCTAAGCCAACAGACGA
* * * * * *
39077 AACTAGCGGGTGGGCCGGCACTACGCCGGCCAGAGAGAC-AGGATGCGTAAGCCGTGTATCGATA
193 AACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGA-GATGCGCAAGCCGTGGATCGATA
* * *
39141 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAATTTTATGGCATG
257 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTG
39206 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
322 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
39271 TTTTTCACA-ATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAAATTTTTTTAGAAGGAGTT
387 TTTTTCA-AGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTT
* * * *
39335 TTTGCCCTACAA-TTTGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTTAGCT
451 TTTGCCCCA-AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
39399 AAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
515 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
39464 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGGT
580 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
* * *
39529 TTGATGAGGGAGATGGGGCCAATATAA-GGAACAAGTACCAGCACCCATTGCACATCATGTGTGC
645 TTGATGAGGGATA-GGGGCCAATATAAGGGCA-AAGTACCAGCACCCATCGCACATCATGTGTGC
* * *
39593 ACACCCCCCGCCCCCCAATCACCAAAACCCCAATGCCGCCGGTCAGGTTCTCTAGCGATGCTCCG
708 ACACCCCCCGCCCCCCAATC-CCGAAACCCCAATGCCGCCGGTCA-GTTCTCCAACGATGCTCCG
* * * * * *
39658 G-GCAATGGTGCCCTGGACGAAAAAAAAAAGTGGCACCAGCACATGCCCAAGCCTAGCATGTACA
771 GTG--ATGGTGCCCCGG--GGAAAAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCA
* *
39722 CCCGTAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCCATATGTTTAGACT
831 CCCGCAACCCTCG-TCCGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACT
* * * * *
39781 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGTGCTCAGCTGGCCAGA
1 -GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * * * *
39846 GGGGCAGGATGCACAAGCCGAGGATCGGTCAGGTCCCCCCCT-TCAT-TTGTCAATCCTGCTGCT
65 GGGGCAGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCCCTGT-ATGCTGCCAATCCTGCTACC
* * * * **
39909 GTAACCTTCAGTTC-GGTCCAATCTTAGA-TGGGGAATGAACTCCGTATGCCTAAGCCAACAGAC
128 GCAACCCTC-GATCTAGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACAGAC
* * * *
39972 GAAATGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGAT
191 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGAT
* * * *
40037 AGGGTGGTAGGTGTGTTTAGGCTCATCTTCATATTTCTACCATGCCAATACCCTTTTTATGGCTT
256 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTT
* * *
40102 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCATTTTTT
321 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
40167 ATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTTTTTAGAAGGAGTT
386 ATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTT
* * * **
40232 TTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTGGCGGCATGCACAAAAAAATTCAGCTA
451 TTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
40297 AAAACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAAACACTTTAA
516 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
40362 TGGCTACTGGTAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTTAAGCTT
581 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* * *
40427 TGATAAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAC
646 TGATGAGGGATA-GGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGTGCAC
* * * * *
40492 ACCCCCCCGCCCCCCAATCACCGGAACCCCAATGCTGCGGGTCGGGTTCTCCAACGATGCTCCGA
710 A-CCCCCCGCCCCCCAATC-CCGAAACCCCAATGCCGCCGGTC-AGTTCTCCAACGATGCTCCGG
* * * ** * * *
40557 TGATGGTGCCCCGGGCAAAAAAAATGTGACACTAGTTCATGCTCGAGCCCAACAAGTGCACCCAC
772 TGATGGTGCCCCGGGGAAAAAAAATGTGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCGC
* * * * *
40622 AACCCTCGGTCCGATCTAATCTTACGCTGGGAATGAACTCCGTATGCTTAGATT
836 AACCCTC-GTCCGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACT
* * *
40676 GGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGA
1 GG-AATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGA
* * ** * * * *
40741 GGGGCAGGATGCGCAAGTCGGGGATCGGTC-GGTCCCCCCTGCGTGCTACCGATCTTGCTGCCGC
65 GGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGTATGCTGCCAATCCTGCTACCGC
* * **
40805 AACCCTCCATCCAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATTGACGAA
130 AACCCTCGATCTAGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAA
40869 ACGAGC
194 ACGAGC
40875 CCAGGGCAAA
Statistics
Matches: 3191, Mismatches: 387, Indels: 269
0.83 0.10 0.07
Matches are distributed among these distances:
832 53 0.02
833 373 0.12
834 18 0.01
835 9 0.00
836 24 0.01
837 17 0.01
838 13 0.00
839 8 0.00
840 15 0.00
841 15 0.00
842 7 0.00
844 4 0.00
845 4 0.00
846 4 0.00
847 1 0.00
848 6 0.00
849 28 0.01
850 9 0.00
851 22 0.01
852 8 0.00
853 23 0.01
854 3 0.00
855 3 0.00
856 5 0.00
857 16 0.01
859 5 0.00
860 3 0.00
861 1 0.00
862 9 0.00
863 20 0.01
864 18 0.01
865 14 0.00
866 21 0.01
867 10 0.00
869 5 0.00
870 3 0.00
872 16 0.01
873 4 0.00
874 4 0.00
875 2 0.00
876 24 0.01
877 27 0.01
878 23 0.01
879 3 0.00
880 6 0.00
881 9 0.00
882 5 0.00
883 1 0.00
884 11 0.00
885 9 0.00
886 5 0.00
887 1 0.00
888 84 0.03
889 52 0.02
890 166 0.05
891 506 0.16
892 85 0.03
893 342 0.11
894 130 0.04
895 265 0.08
896 79 0.02
897 478 0.15
898 56 0.02
899 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (888 bp):
GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAG
GGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGTATGCTGCCAATCCTGCTACCGCA
ACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAAC
GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCAAGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTTGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
AGGGATAGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCC
CGCCCCCCAATCCCGAAACCCCAATGCCGCCGGTCAGTTCTCCAACGATGCTCCGGTGATGGTGC
CCCGGGGAAAAAAAATGTGGCACCAGCACATGCCGAGCCCAGCATGTGCACCCGCAACCCTCGTC
CGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACT
Found at i:40989 original size:26 final size:26
Alignment explanation
Indices: 40953--41005 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
40943 CTGGTTTGAT
40953 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
40979 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
41005 C
1 C
41006 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:41893 original size:25 final size:25
Alignment explanation
Indices: 41850--41907 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
41840 CTGAGTCTGG
41850 TCCTAT-CTTACACTAGGAATGAAC
1 TCCTATGCTTACACTAGGAATGAAC
* *
41874 TCCTATGCTTAGACTGGGAATGAAC
1 TCCTATGCTTACACTAGGAATGAAC
41899 TCCGTATGC
1 TCC-TATGC
41908 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 6 0.20
25 19 0.63
26 5 0.17
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (25 bp):
TCCTATGCTTACACTAGGAATGAAC
Found at i:43107 original size:882 final size:887
Alignment explanation
Indices: 40874--44744 Score: 4921
Period size: 877 Copynumber: 4.4 Consensus size: 887
40864 ACGAAACGAG
* * *
40874 CCCAGGGCAAAAAAAAAATGGGGCACCAGTACATGCCTGAGCCCAGTATGTGCACCCGCAACCCT
1 CCCA-GGC-AAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCT
**
40939 CGATCTGGTTTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
64 CGATCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* ** * *
41004 GCCTATGTCAACCCATAAAATGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGTAGGATGCGCAAG
129 GCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAG
* * * *
41069 CCGGGGATCGGCCGGGGATCGACCGGGTCCCCCCTGCCTGCTACCGATCCTGCTGTC-GCAACCC
194 CCGGGGAT----C--GG-T----CGGGTCCCCCCTACATGCTGCCGATCCTGCTGCCAG-AACCC
* * *
41133 TCGATCCGATATGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGT
247 TCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * *
41198 GG-CGGGCGGGCATTACGACGGCTAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTA
312 GGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTA
* * * * * *
41262 GGTGGGTTTTGGCACATCTTCATATTTCTGTCGTGCCAATGCCATTTTTCTGGGTTGTAAATTCA
377 GGTGGGTTTAGGCACATCTTCACATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * ** * * *
41327 TACAGTGGTCGCTTAAGCCTTCATGTGAAGTTTCATAACAAGACAACTAATTTCCTATTTTTCAC
442 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCAC
* *
41392 GATTTTAAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCA
507 GATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCCCCA
* *
41457 TACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAACATTCAGCTAAAAACTCA
571 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAC-TTCAGCTAAAAACTCA
* *
41521 AAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACT
635 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
41586 GGCAGCAAACCTGTAAAATCTCAAATGATCTTTAA-AGGGTGTGAGTTCTCGAGGCTTGATGAGG
700 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
41650 GATAGTGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCA--TGCGCACACCCCCCA
765 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCA
* * *
41713 CCCCCTCAATCGTCGGAACCCCAATGCCACCGGACAGGTTCTCCGACGATGCTCCGACGTTGGTG
830 CCCCC-CAATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCG-C---GCGCCGA---TGGTG
41778 C
887 C
* ** * *
41779 CCC-GAGCGAAAAAAAATGTAGCACCACCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCT-
1 CCCAG-GCAAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTC
* *
41842 GAGTCTGGTCCTATCTTACACTAGGAATGAACTCC-TATGCTTAGACTGGGAATGAACTCCGTAT
65 GA-TCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
** * * *
41906 GCCTAAGTCAACCCACGAAATGAGCGTGTAGGCGCTCAGCCTGCCAGAGGGGCA-GATGCGTAAG
129 GCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAG
* * * *
41970 CCGGGGATCGGTCGGGTCCCCCCTACGTGCTACCAATCCTGTTGCTGCA-AA-CCTCGATCCGAT
194 CCGGGGATCGGTCGGGTCCCCCCTACATGCTGCCGATCCTGCTGC--CAGAACCCTCGATCCGAT
* * * * * *
42033 CCGATCTTAGACTTGGAATGAACTCTGTATCCCTAAGCCAGCCGACGAAACGAGCTGACGGGCGG
257 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGG
* * * * * *
42098 GCACTACGCCGGTCAGAGTGTCGGGATGCGTAAGCAATGGATCGATAAGGTGGTAGGTGGGTTTA
322 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
42163 GGCACATCTTC-CTATTT-TGGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
387 GGCACATCTTCAC-ATTTCT-GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
42226 TCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTG
450 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCACGATTTTTA
* ** **
42291 AAACTTTTTACAGTTTAGGA-TTTTTTAAAATTTTTTCGTAAGGAGTTTTGGATCCAAACTTGGT
515 AAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGT
* * * *
42355 AGATGTGATCCTTGTGTTTTTATTGGCATGCACAAAAAACTTCAGCTAAAAACTCAAAGTGTATA
579 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCAAAGTGTACA
*
42420 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
644 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
42485 CCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
709 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
42550 CCAATATAAGGGCCAAGTACCAGCGCCCATTGCACATCATGTGCGCACACCCCCTACCCCCTAAT
774 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAAT
*
42615 TGCCGG-ACCCCAATGCCACCGGTCAGGTTCT-C-CG-G-CGATGGTGC
839 CGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGCGCGCCGATGGTGC
* * * * *
42659 CCCAGGCAAAAAAAAATGCGACACCAGCACATGCTTGATCCCAACATGTGCACCTGCAACCCTCG
1 CCCAGGCAAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCG
* ** * * * *
42724 GTCCAGTCCAATCTTACACTGAGAATGAACTCCGTATGCTTAGACTAGGAATGAACCCCGTATGC
66 ATCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * *
42789 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCACAAGCT
131 CTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCC
*** * * *
42854 GGGGATCGGTCGGGTCCCCCCTGTGTGCTGCCGATCCTGCTGCCAGAACCCTCGGTTCGATCTAA
196 GGGGATCGGTCGGGTCCCCCCTACATGCTGCCGATCCTGCTGCCAGAACCCTCGATCCGATCTGA
*
42919 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCAT
261 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCAC
* * *
42984 TACGCCGGCCAGAGAGGTGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
326 TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
** **
43049 CATCTTCACATTTCTGCCATGCCAACACCATTTTTATGGCTTGTAAATTCATACAATGGTCTTTT
391 CATCTTCACATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
43114 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTGGTTTTCTATTTTTCACGATTTTTGAAACTT
456 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCACGATTTTTAAAACTT
* * * *
43179 TTTACGGTTCGGGATTTTTTTAAAATTATTTCAGAAGAAGTTTTGGCCCCAAACGTGGTGGACGT
521 TTTACGGTTCGGGATTTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
43244 GATCCATGTACTTTTGTTGGCATGCACAAAACAA-TTCAGCTAAAAACTCGAAGTGTACAGGATT
585 GATCCTTGTATTTTTGTTGGCATGCACAAAA-AACTTCAGCTAAAAACTCAAAGTGTACAGGATT
*
43308 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGT
649 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
43373 AAAATCTCAAACGCTCTTTAAGTGGTTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAAT
714 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
43438 ATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTACGCACGCCCCCCACCCCCCAATCACCG
779 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGCCG
** *
43503 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGGCGATGGTGC
844 GAACCCCAATGCCACCGGTCAGGTTCTCC-GC---G---CGCCGATGGTGC
* *
43554 CCTAGGC-GAAAAAAATGCGGCACCAGCACATG-CT----CC--C--GT--------AACCCTCG
1 CCCAGGCAAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCG
*
43601 ATCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGC
66 ATCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
43666 CTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGCCTGCCAGAGGGGCAGGATACGTAAGCC
131 CTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * * **
43731 AGGGATCGGTCGGGTCCCCCCCTACATGCTGCTGATCCTACTACCACAACCCTC-ATCTAATCTG
196 GGGGATCGGTCGGGT-CCCCCCTACATGCTGCCGATCCTGCTGCCAGAACCCTCGATCCGATCTG
* * * * *
43795 ATCTTAGACTTGGAATGAACTCCGTATGTCTAAGTCAACCGATGAAACGAGCGGACAGGCGGGCA
260 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCA
* * *
43860 CTACACCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGTTGCTAGGTGGGTTTAGGC
325 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * ** *
43925 ACAACTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCT
390 ACATCTTCACATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
** * * *
43990 TAAGCCTTCATGTGAAGTTTCATTTCAAGACGACTTGTTTTTTATTTTTCACGATTTTCAAAACT
455 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCACGATTTTTAAAACT
* * * *
44055 TTTTACGGTTCGGGATTTTTTAAAAATTTTTTTAGATGGGGTTTTGGCCCCAAACTTGGTAGACG
520 TTTTACGGTTCGGGATTTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * *
44120 AGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC-GACTAAAAACTCGAACTGTACAGGTT
584 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAG-CTAAAAACTCAAAGTGTACAGGAT
*
44184 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTG
648 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
44249 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAA
713 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
44314 TATAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCGCACACCCCCTACCCCCCAATCGTC
778 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGCC
* * * *
44379 AGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
843 GGAACCCCAATGCCACCGGTCAGGTTCTCC-GC---G---CGCCGATGGTGC
** *
44431 CCTGGGCAAAAAAAAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCA-CCGACAACC
1 CCCAGGC---AAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCG-CAACC
* * *
44495 CTCGATCTGGTCTGATCTTACATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGT
62 CTCGATCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
44560 ATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGTCGGCTAGAGGGGCAAGATGCGAA
127 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCA
* * * * * * *
44625 AGCCGGGGATCGGTTGGGTCCCCCCTACATGCTGCTGATCCTGCT-ACTGCAACCCTCAATCTGG
192 AGCCGGGGATCGGTCGGGTCCCCCCTACATGCTGCCGATCCTGCTGCCAG-AACCCTCGATCCGA
* * * * * ** *
44689 TCCGATCTTACATTGGGAATTAACTCTGTATGCCTTGGCCAACCGATGAAACGAGC
256 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
44745 TATCCGATCC
Statistics
Matches: 2596, Mismatches: 307, Indels: 133
0.86 0.10 0.04
Matches are distributed among these distances:
876 3 0.00
877 712 0.27
878 36 0.01
880 86 0.03
881 103 0.04
882 306 0.12
883 281 0.11
884 26 0.01
885 4 0.00
886 2 0.00
887 2 0.00
888 2 0.00
889 9 0.00
890 266 0.10
891 290 0.11
892 8 0.00
893 20 0.01
894 25 0.01
895 17 0.01
896 1 0.00
897 33 0.01
898 188 0.07
901 17 0.01
902 76 0.03
903 78 0.03
904 2 0.00
905 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
CCCAGGCAAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCG
ATCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCC
GGGGATCGGTCGGGTCCCCCCTACATGCTGCCGATCCTGCTGCCAGAACCCTCGATCCGATCTGA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCAC
TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCACATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCACGATTTTTAAAACTT
TTTACGGTTCGGGATTTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCAAAGTGTACAGGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGCCGGA
ACCCCAATGCCACCGGTCAGGTTCTCCGCGCGCCGATGGTGC
Found at i:43649 original size:26 final size:26
Alignment explanation
Indices: 43613--43665 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
43603 CTGGTCCGAT
43613 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
43639 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
43665 C
1 C
43666 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:44787 original size:26 final size:25
Alignment explanation
Indices: 44758--44809 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
44748 CCGATCCAAT
*
44758 CTTACACAAGAAATGAACTCCGTATG
1 CTTACAC-AGAAATGAACTCCATATG
* * *
44784 CTTAGACTGGAATGAACTCCATATG
1 CTTACACAGAAATGAACTCCATATG
44809 C
1 C
44810 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (25 bp):
CTTACACAGAAATGAACTCCATATG
Found at i:44979 original size:247 final size:247
Alignment explanation
Indices: 44522--44991 Score: 561
Period size: 247 Copynumber: 1.9 Consensus size: 247
44512 TTACATTGGG
* * *
44522 AATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGC
1 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGC
* * * *
44587 GTGCGGGCACTCAGTCGGCTAGAGGGGCAAGATGCGAAAGCCGGGGATCGGTTGGGTCCCCCCTA
66 GTGCGGGCACTCAGCCGGCTAAAGGGGCAAGATGCGAAAGCCGGGGATCGATCGGGTCCCCCCTA
* * * * * * * * *
44652 CATGCTGCTGATCCTGCTACTGCAACCCTCAATCTGGTCCGATCTTACATTGGGAATTAACTCTG
131 CATACTGCTGATCCTACTACCGCAACCCTCAATCCGATCCGATCTTACACTAGGAATGAACTCCG
** **
44717 TATGCCTTGGCCAACCGATGAAACGAGCTATCCGATCCAATCTTACACAAGA
196 TATGCCTAAGCCAACCGACAAAACGAGCTATCCGATCCAATCTTACACAAGA
** *
44769 AATGAACTCCGTATGCTTAGACT-GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGT
1 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGC
* * * * *
44833 GTGCGGGCGCTCAGCCAG-TCAAAGGGGCAGGATGC-ACAGGTCGGGGATCGATCGGGTCACCCC
66 GTGCGGGCACTCAGCCGGCT-AAAGGGGCAAGATGCGA-AAGCCGGGGATCGATCGGGTC-CCCC
* * * * ** *
44896 TTACCTACTG-TCGATCCTACTGCCGCAACTCTCGGTCCGATCCGATCTTAGACTAGGAATGAAC
128 CTACATACTGCT-GATCCTACTACCGCAACCCTCAATCCGATCCGATCTTACACTAGGAATGAAC
44960 TCCGTATGCCTAAGCCAACCGACAAAACGAGC
192 TCCGTATGCCTAAGCCAACCGACAAAACGAGC
44992 GAACGGGCTG
Statistics
Matches: 184, Mismatches: 35, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
245 2 0.01
246 82 0.45
247 100 0.54
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (247 bp):
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGC
GTGCGGGCACTCAGCCGGCTAAAGGGGCAAGATGCGAAAGCCGGGGATCGATCGGGTCCCCCCTA
CATACTGCTGATCCTACTACCGCAACCCTCAATCCGATCCGATCTTACACTAGGAATGAACTCCG
TATGCCTAAGCCAACCGACAAAACGAGCTATCCGATCCAATCTTACACAAGA
Found at i:48004 original size:899 final size:899
Alignment explanation
Indices: 46109--50245 Score: 5873
Period size: 899 Copynumber: 4.6 Consensus size: 899
46099 CTCGATTCGA
* * * *
46109 TCTGATCTTAGACTAGGAAAGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGTGGACGGGCA
1 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCG
* *
46174 GGCACTACGT-CGACCAGAGAGGTGGGATGCGCAA-CCTATGGATCGATAGGGTGGTAGGTGGGT
66 GGCACTAC-TCCGACCAGAGAGGCGGGATGCGCAAGCC-GTGGATCGATAGGGTGGTAGGTGGGT
** *
46237 TTAGGCACATCTTCATATTTCTATCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
129 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
** * * **
46302 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTCTCTACTTTTCACAATTTTT
194 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTT
* * * *
46367 GAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCTCCAAACTTGG
259 GAAACTTTTTATGGTTC-GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* * *
46432 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAGTTCAGATAAAAACTCGAAGTGTAC
323 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
46497 AGGATTTGGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGTAA
388 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
46562 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
46627 GCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTGCCCCGCCCCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGCCCCCC
* * * * *
46692 CAATCGCTAGAACCCCCAATTCCGTCGA-TCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCC
582 TAATCGCGAGAACCCCCAATGCCGTCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * * * * *
46756 AGGCAAAAAAAAATTCAACCCCAGTACATGCCCGAGCCCAGCATGTGCACTTACAACCCTCAATC
647 AGGCAAAAAAAAATTCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAACCCTCGATC
* * * * **
46821 CGGTCCAATCTTACACCGTGAATGAACTTCGTATGCTTAGACTGGGAATAAACTCCATATGCCTA
712 CGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTCAGAATAAACTCCATATGCCTA
* * * *
46886 AGTCAACCCATGAAACGAGCGTACGGGCGCTCAACTGACAAGAGGGGCAGGATGCACAAGCCGAG
777 AGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGGCAGGATGCACAAGCCGGG
* * * * *** * * ***
46951 GATCGACCGGGCCCCCCTCTACATGCTGTCGATCATGTTACTGTAACCCTCGATCCAA
842 GATCGACCGGGTCCCCCTCTACATGCTATCGATCCTGCTACCACAACCCTTGGTCTGC
* * *
47009 TCTGATCTTAGACT-GAGAATGAACTTCGTATGCCTAAGCCAACCGGCGAAACGAGCGGGCGGGC
1 TCTGATCTTAGACTAG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGC
* * *
47073 GGGCACTACGT-CGGCCAGAGAGGTGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 GGGCACTAC-TCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
47137 TTAGGCAAATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATG
129 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
47202 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATAACTCGTTTTCTTTTTTTCATGATTTTT
194 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTT
*
47267 GAAACTTTTTATGATTCTGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
259 GAAACTTTTTATGGTTC-GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* * *
47332 TAGACATGATCCTTGTATTTTTTTTGGCATGCAGAAAAACATTCAGAC-AAAAACTCGAAGTGTA
323 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-CTAAAAACTCGAAGTGTA
* ** * * *
47396 CAGGATTTTGTAACCATTTGAAAAAAACGTCCCCATTTTAGACACTGTAATTGCTACTGGCAGCA
387 CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
47461 AACCTGTAAAATCTCAAATGCTCTTGAA-AGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
47525 GGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGTACAACCCCCCCGCCCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGCCCCC
* *
47590 CTAATCGTCGA-AACCCCCAATGCC-TCCAGTCAGGTTCTCCAACGATGCTCCGGTGATGGTGCC
581 CTAATCG-CGAGAACCCCCAATGCCGTCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
* * * * * *
47653 CCAGGCAAAAAAAAATACGGCACCAGCACGTGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGG
645 CCAGGCAAAAAAAAATTCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAACCCTCGA
* * * * *
47718 TTCGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTCAGAATGAACTTCGTATGCC
710 TCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTCAGAATAAACTCCATATGCC
* * *
47783 TAAGTCAACACACGAAACGAGCGTGCGGGTGCTCAACCGACCAGAGGGGCAGGATGCACAAGCCG
775 TAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGGCAGGATGCACAAGCCG
* *
47848 GGGATCGATCGGGTCCCCTTCTACATGCTATCGATCCTGCTACCACAACCCTTGGTCTGC
840 GGGATCGACCGGGTCCCCCTCTACATGCTATCGATCCTGCTACCACAACCCTTGGTCTGC
* * * *
47908 TTTGACCTTAGACT-GAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGACGGGC
1 TCTGATCTTAGACTAG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGC
* * * * *
47972 AGGCACTACTCCGCCCAGAGAGGCGGGATGCGCAAGCCATGAATCGATAGGCTGGTAGGTGGGTT
65 GGGCACTACTCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
48037 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGG
130 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
48102 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * *
48167 AAACTTTTTATGGTTCGAGATTTTTTAAAAATTTTTTTAGAAGGACTTTTGACTCCAAACTTGGT
260 AAACTTTTTATGGTTCG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
*
48232 AGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
324 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
48297 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
389 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
48362 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
48427 CCAATATAAGGGCCAAGTACCAGCACCCATTGTACATCATGTGCGAACACCCCCCAC-CCCCCC-
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGCCCCCCT
* * *
48490 AATCGCCAGAACCCCCAATTCCGT-CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCA
583 AATCGCGAGAACCCCCAATGCCGTCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCA
* * * * *
48554 GGCACAAAAAAATTCAGCACTAGCAAATGCCCAAGCCCAGCATGTGCACCTGCAA-CCTTGAATC
648 GGCAAAAAAAAATTCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAACCCTCG-ATC
* * * *
48618 CAGTCTGATCTTACATTGGGAATGAACTCCGTCTGCTTAGACT-AGGAATAAACTCCATATGCCT
712 CGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTCA-GAATAAACTCCATATGCCT
** * *
48682 AAGTCAACCCACGAAACGAATGTGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCACAAGTCGG
776 AAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGGCAGGATGCACAAGCCGG
* * * * * *
48747 GCATCGACCGGGTCCCCCTCTGCATGCTGTCAAT-C--CAATC-CAA---------T-C
841 GGATCGACCGGGTCCCCCTCTACATGCTATCGATCCTGCTACCACAACCCTTGGTCTGC
* * * * *
48792 -C-AATCTTAGACTAGGAATCAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTG
1 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCG
* * * * *
48855 GGCACTACGCCGGCCAGAAAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACTCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
48920 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
**
48985 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGA
* * *
49050 AACTTTTTACGATTCTAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
261 AACTTTTTATGGTTC-GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* **
49115 GACATGATCCTTGTATATTTTGTTGGCTTGCACAAAAACGTTCAGCTAAAAACTCGAAGTGTACA
325 GACATGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
49180 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAGA
389 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
49245 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
49310 CCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACAACCCCCCACCACGCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCC-CCGC-CCC
* * * *
49375 CCTAATCGTCG-GAACCCCCAATGTCG-CCAGTCAGGTTCTCCGGCGATGCTCCGGTGATAGTGC
580 CCTAATCG-CGAGAACCCCCAATGCCGTCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
* * * *
49438 CCCTGG-AAAAAAAATTTCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCTGCAACCCTCG
644 CCCAGGCAAAAAAAAATTCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAACCCTCG
* * * ** * *
49502 GTCTGGTTCGATCTTACGTTGGGAATGAACTCCGTATGCTTAGACTCAGAATGAACTCCGTATGC
709 ATCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTCAGAATAAACTCCATATGC
* * * ** *
49567 CTAAGTTAACCCACGAAATGAGCGTACGGGTGCTCTGCCGGCCAGAGGGGCAGGATGCACAAGCC
774 CTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGGCAGGATGCACAAGCC
*
49632 GGGGATCGACCGGGTCCCCCTCTACATGCTATCGATCCTGCTACCACAACCCTTGGTCTGG
839 GGGGATCGACCGGGTCCCCCTCTACATGCTATCGATCCTGCTACCACAACCCTTGGTCTGC
*
49693 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGACGGGCG
1 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCG
* * * *
49758 GGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTAGATCGATAGGGTGATAGGTAGGTTT
66 GGCACTACTCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
49823 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGT
131 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
49888 CCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * * *
49953 AACTTTTTATGGTTCGAGATTTTTTTAAAA-TTTTTCAAAAGGATTTTTGGCACCAAATTTGGCA
261 AACTTTTTATGGTTCG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
50017 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGTGTACAG
325 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
* * * *
50082 GATTTTATAACCGTTTGAAAAAAGTGT-CCCATTTCAGACACCTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
50146 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
50211 CAATATAAGGG-CAAGTACCAGGACCCATCGCACAT
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
50246 TGTCGTAAGA
Statistics
Matches: 2888, Mismatches: 304, Indels: 91
0.88 0.09 0.03
Matches are distributed among these distances:
882 305 0.11
883 214 0.07
884 2 0.00
885 7 0.00
886 2 0.00
887 191 0.07
888 61 0.02
889 1 0.00
890 3 0.00
891 3 0.00
894 3 0.00
895 3 0.00
897 8 0.00
898 249 0.09
899 826 0.29
900 628 0.22
901 71 0.02
902 45 0.02
903 266 0.09
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (899 bp):
TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCG
GGCACTACTCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTATGGTTCGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCTAAT
CGCGAGAACCCCCAATGCCGTCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAGGC
AAAAAAAAATTCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAACCCTCGATCCGGT
CCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTCAGAATAAACTCCATATGCCTAAGTC
AACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGGCAGGATGCACAAGCCGGGGATC
GACCGGGTCCCCCTCTACATGCTATCGATCCTGCTACCACAACCCTTGGTCTGC
Found at i:51217 original size:16 final size:16
Alignment explanation
Indices: 51191--51256 Score: 51
Period size: 17 Copynumber: 3.9 Consensus size: 16
51181 TCACACTTGT
51191 CTTTGGGATTTTTAGGA
1 CTTT-GGATTTTTAGGA
* *
51208 CTTTGGATTTTAAGAGG
1 CTTTGGATTTTTAG-GA
* * *
51225 TTTTGAATTTTTGGGGA
1 CTTTGGATTTTT-AGGA
*
51242 TTTTGGATTTTTAGG
1 CTTTGGATTTTTAGG
51257 GGTTTTAAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
16 11 0.29
17 26 0.68
18 1 0.03
ACGTcount: A:0.18, C:0.03, G:0.29, T:0.50
Consensus pattern (16 bp):
CTTTGGATTTTTAGGA
Found at i:51229 original size:17 final size:16
Alignment explanation
Indices: 51209--51262 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
51199 TTTTTAGGAC
*
51209 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
* *
51226 TTTGAATTTTTGGGGAT
1 TTTGGATTTTAGGGG-T
51243 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
51260 TTT
1 TTT
51263 AAAAACTTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
16 3 0.10
17 19 0.63
18 8 0.27
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.54
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:51697 original size:17 final size:17
Alignment explanation
Indices: 51657--51701 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
51647 AAATATACTT
* *
51657 AAAATAACAAAAATAAT
1 AAAATAAAAAAAATAAG
* *
51674 AATATAAAAAAAATTAG
1 AAAATAAAAAAAATAAG
51691 AAAATAAAAAA
1 AAAATAAAAAA
51702 TTTTTTTTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (17 bp):
AAAATAAAAAAAATAAG
Found at i:52667 original size:13 final size:13
Alignment explanation
Indices: 52649--52689 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
52639 GTTTCTTTGC
52649 TATTTTTTTGTAT
1 TATTTTTTTGTAT
*
52662 TATTTTTTGGTATT
1 TATTTTTTTGTA-T
52676 TATTTTTTTGTAT
1 TATTTTTTTGTAT
52689 T
1 T
52690 TCGTATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.15, C:0.00, G:0.10, T:0.76
Consensus pattern (13 bp):
TATTTTTTTGTAT
Found at i:52678 original size:14 final size:14
Alignment explanation
Indices: 52649--52690 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
52639 GTTTCTTTGC
52649 TATTTTTTTGTA-T
1 TATTTTTTTGTATT
*
52662 TATTTTTTGGTATT
1 TATTTTTTTGTATT
52676 TATTTTTTTGTATT
1 TATTTTTTTGTATT
52690 T
1 T
52691 CGTATAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (14 bp):
TATTTTTTTGTATT
Found at i:53058 original size:88 final size:87
Alignment explanation
Indices: 52877--53085 Score: 285
Period size: 88 Copynumber: 2.4 Consensus size: 87
52867 AAAAATAATA
* * * *
52877 AATCGATGGAGATAACACACGCCAATCAAAATTATGCCCGGAGGTCTTACAGAATAGACTGGGAT
1 AATCGATCGAGATAACAC-CGCGAATCAAAATTATGCCCGAAGGTCTTACAAAATAGACTGGGAT
*
52942 AACATCACAGTGAAAAGATAAAG
65 AACATCACAGTCAAAAGATAAAG
* * * *
52965 AATCGATCGAGATAACACCGCGAATCGAAATTATGTCTGAAGGTCTTACAAAATTGACTGGGATA
1 AATCGATCGAGATAACACCGCGAATCAAAATTATGCCCGAAGGTCTTACAAAATAGACTGGGATA
*
53030 ACATCGTA-AGTCAAAAGATAAGG
66 ACATC--ACAGTCAAAAGATAAAG
*
53053 AATCGATCGGGATAACACCGCGAATCAAAATTA
1 AATCGATCGAGATAACACCGCGAATCAAAATTA
53086 CGCTTAGAGG
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
87 45 0.42
88 61 0.57
89 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.20
Consensus pattern (87 bp):
AATCGATCGAGATAACACCGCGAATCAAAATTATGCCCGAAGGTCTTACAAAATAGACTGGGATA
ACATCACAGTCAAAAGATAAAG
Found at i:53121 original size:22 final size:23
Alignment explanation
Indices: 53093--53152 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 23
53083 TTACGCTTAG
*
53093 AGGTCTTA-AGAATCATTCCTAA
1 AGGTCTTACAGAATCATGCCTAA
* **
53115 AGGTCTTATAGAATCATGCCTGG
1 AGGTCTTACAGAATCATGCCTAA
53138 AGGTCTTACAGAATC
1 AGGTCTTACAGAATC
53153 GACTGGAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
22 8 0.24
23 25 0.76
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (23 bp):
AGGTCTTACAGAATCATGCCTAA
Found at i:53250 original size:133 final size:130
Alignment explanation
Indices: 53003--53371 Score: 427
Period size: 133 Copynumber: 2.8 Consensus size: 130
52993 AATTATGTCT
*
53003 GAAGGTCTTACAAAATTGACTGGGATAACATCGTAAGTCAAAAGATAAGGAATCGATCGGGATAA
1 GAAGGTCTTACAGAATTGACT-GGATAACATCGTAAGTC-AAAGATAAGGAATCGATCGGGATAA
* * *** * *
53068 CACCGCGAATCAAAATTACGCTTAGAGGTCTTAAGAATCATTCCTAAAGGTCTTATAGAATCATG
64 CACCGCGAATCGAAATTATGCCCGGAGGTCTTAA-AATCATGCCTAAAGGTCTTACAGAATCATG
*
53133 CCT
128 CCC
* * *
53136 GGAGGTCTTACAGAATCGACTGGAATAAAATCGTAAGTCGAAAGATAAGGAATCGATCGGGATAA
1 GAAGGTCTTACAGAATTGACTGG-ATAACATCGTAAGTC-AAAGATAAGGAATCGATCGGGATAA
* * *
53201 CATCGTGAATCGAAATTATGCCCGGAGGTCTTAGAAATCGTG-CTCAAAGGTCTTACAGAATCAT
64 CACCGCGAATCGAAATTATGCCCGGAGGTCTTA-AAATCATGCCT-AAAGGTCTTACAGAATCAT
53265 GCCC
127 GCCC
* * ** * *
53269 GAAGGTCTTACAGAATTGACTCGGGTAACATCGCAAGTCAGAA-ATAAAAAATCGATTGGGACAA
1 GAAGGTCTTACAGAATTGACT-GGATAACATCGTAAGTCA-AAGATAAGGAATCGATCGGGATAA
* *
53333 CACCGCAAATCGAAATTATGCCCGAAGGTCTTACAAATC
64 CACCGCGAATCGAAATTATGCCCGGAGGTCTTA-AAATC
53372 TCAAAATCTT
Statistics
Matches: 201, Mismatches: 30, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
132 56 0.28
133 142 0.71
134 3 0.01
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (130 bp):
GAAGGTCTTACAGAATTGACTGGATAACATCGTAAGTCAAAGATAAGGAATCGATCGGGATAACA
CCGCGAATCGAAATTATGCCCGGAGGTCTTAAAATCATGCCTAAAGGTCTTACAGAATCATGCCC
Found at i:53273 original size:23 final size:23
Alignment explanation
Indices: 53218--53284 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
53208 AATCGAAATT
* *
53218 ATGCCCGGAGGTCTTAGA-AATC
1 ATGCCCGAAGGTCTTACAGAATC
* * *
53240 GTGCTCAAAGGTCTTACAGAATC
1 ATGCCCGAAGGTCTTACAGAATC
53263 ATGCCCGAAGGTCTTACAGAAT
1 ATGCCCGAAGGTCTTACAGAAT
53285 TGACTCGGGT
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 13 0.36
23 23 0.64
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (23 bp):
ATGCCCGAAGGTCTTACAGAATC
Found at i:54148 original size:33 final size:32
Alignment explanation
Indices: 54079--54422 Score: 306
Period size: 33 Copynumber: 10.5 Consensus size: 32
54069 TTGGGGCTAA
*
54079 ATAAACTTGGCTTAAAT-TT-ATTGAAGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA-GCCAG
*
54110 CTAAACTGGGCTTAAATCTTCATTTGAAGCCAG
1 ATAAACTGGGCTTAAATCTTCA-TTGAAGCCAG
* * * * * *
54143 ATAAACTAGGTTTAAAACCTCATTGATGGCTAG
1 ATAAACTGGGCTTAAATCTTCATTGA-AGCCAG
* * * *
54176 ATGAATTGGGCTTAAAGCTTTATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
54209 ATAAACTGGGCTTAAAGT-TTCATTGAGAGCCAG
1 ATAAACTGGGCTTAAA-TCTTCATTGA-AGCCAG
* *
54242 ATAAACTGGGCTTAAAGCTTCATT-AATGGCCAA
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
* * *
54275 ATAAACTAGGCTTAAAT-ATCATTGATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGA-AGCCAG
*
54307 ATAAACTGGGCTTAAATCTTCATTTGAGGCCAG
1 ATAAACTGGGCTTAAATCTTCA-TTGAAGCCAG
* * *
54340 ATAAATTGGGCTTAAATTTTCATTGATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGA-AGCCAG
* *
54373 ATAAATTGGGCTTAAAACTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
54406 ATAAACTGGGCTTAAAT
1 ATAAACTGGGCTTAAAT
54423 TTTATTTTAT
Statistics
Matches: 256, Mismatches: 38, Indels: 36
0.78 0.12 0.11
Matches are distributed among these distances:
31 16 0.06
32 38 0.15
33 191 0.75
34 10 0.04
35 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (32 bp):
ATAAACTGGGCTTAAATCTTCATTGAAGCCAG
Found at i:54361 original size:131 final size:131
Alignment explanation
Indices: 54079--54422 Score: 418
Period size: 131 Copynumber: 2.6 Consensus size: 131
54069 TTGGGGCTAA
* *
54079 ATAAACTT-GGCTTAAATTT-ATTGA-AGGCCAGCTAAACTGGGCTTAAATCTTCATT--TGAAG
1 ATAAA-TTGGGCTTAAATTTCATTGAGA-GCCAGATAAACTGGGCTTAAAACTTCATTAATG--G
* * * * *
54139 CCAGATAAACTAGGTTTAAA-ACCTCATTGATGGCTAGATGAATTGGGCTTAAAGCTTTATTAAT
62 CCAGATAAACTAGGCTTAAATA-CTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAAT
54203 GGCCAG
126 GGCCAG
* *
54209 ATAAACTGGGCTTAAAGTTTCATTGAGAGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCA
1 ATAAATTGGGCTTAAA-TTTCATTGAGAGCCAGATAAACTGGGCTTAAAACTTCATTAATGGCCA
* * *
54274 AATAAACTAGGCTTAAATA-TCATTGATGGCCAGATAAACTGGGCTTAAATCTTCATTTGA-GGC
65 GATAAACTAGGCTTAAATACTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCA-TTAATGGC
54337 CAG
129 CAG
*
54340 ATAAATTGGGCTTAAATTTTCATTGATG-GCCAGATAAATTGGGCTTAAAACTTCATTAATGGCC
1 ATAAATTGGGCTTAAA-TTTCATTGA-GAGCCAGATAAACTGGGCTTAAAACTTCATTAATGGCC
*
54404 AGATAAACTGGGCTTAAAT
64 AGATAAACTAGGCTTAAAT
54423 TTTATTTTAT
Statistics
Matches: 188, Mismatches: 17, Indels: 17
0.85 0.08 0.08
Matches are distributed among these distances:
129 1 0.01
130 13 0.07
131 115 0.61
132 55 0.29
133 2 0.01
134 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (131 bp):
ATAAATTGGGCTTAAATTTCATTGAGAGCCAGATAAACTGGGCTTAAAACTTCATTAATGGCCAG
ATAAACTAGGCTTAAATACTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCA
G
Found at i:54425 original size:66 final size:65
Alignment explanation
Indices: 54079--54424 Score: 414
Period size: 66 Copynumber: 5.3 Consensus size: 65
54069 TTGGGGCTAA
* * * *
54079 ATAAACTTGGCTTAAATTT-ATTGAAGGCCAGCTAAACTGGGCTTAAATCTTCATT--TGAAGCC
1 ATAAACTGGGCTTAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAATG--GCC
54141 AG
64 AG
* * ** * * * *
54143 ATAAACTAGGTTTAAAACCTCATTGATGGCTAGATGAATTGGGCTTAAAGCTTTATTAATGGCCA
1 ATAAACTGGGCTT-AAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCA
54208 G
65 G
54209 ATAAACTGGGCTTAAAGTTTCATTGA-GAGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCC
1 ATAAACTGGGCTTAAA-TTTCATTGATG-GCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCC
*
54273 AA
64 AG
* * * *
54275 ATAAACTAGGCTTAAATATCATTGATGGCCAGATAAACTGGGCTTAAATCTTCATTTGA-GGCCA
1 ATAAACTGGGCTTAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCA-TTAATGGCCA
54339 G
65 G
* * *
54340 ATAAATTGGGCTTAAATTTTCATTGATGGCCAGATAAATTGGGCTTAAAACTTCATTAATGGCCA
1 ATAAACTGGGCTTAAA-TTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCA
54405 G
65 G
54406 ATAAACTGGGCTTAAATTT
1 ATAAACTGGGCTTAAATTT
54425 TATTTTATTT
Statistics
Matches: 240, Mismatches: 32, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
64 11 0.05
65 67 0.28
66 160 0.67
68 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (65 bp):
ATAAACTGGGCTTAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCAG
Done.