Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167922.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_186, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56098
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Found at i:9384 original size:58 final size:57
Alignment explanation
Indices: 9310--9584 Score: 376
Period size: 58 Copynumber: 4.7 Consensus size: 57
9300 TCTTGCGCAG
*
9310 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTCTTTTGAAACTTTA-ATTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATT-TTTTGAAACTTTATTTTTA-A
* *
9368 GGAAGATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTGAAACTTTATTTTTAA
* *
9427 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTT-ATTTTTAA
* *
9485 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA--TATTTTTTGAAACTTTATTTTTAA
*
9544 GGAAAATTGAT-CTTTCAACTTTTCCCCAAAAATATATTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATAT-TTTTT
9585 TTATTTTTAT
Statistics
Matches: 196, Mismatches: 13, Indels: 17
0.87 0.06 0.08
Matches are distributed among these distances:
56 2 0.01
57 18 0.09
58 91 0.46
59 65 0.33
60 20 0.10
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTTATTTTTAA
Found at i:9404 original size:27 final size:27
Alignment explanation
Indices: 9373--9460 Score: 68
Period size: 27 Copynumber: 3.1 Consensus size: 27
9363 TTAGAGGAAG
9373 ATTGATACTTTCAACTTTTCCTCAAAA
1 ATTGATACTTTCAACTTTTCCTCAAAA
** * * ** *
9400 ATTGATTTTTTGAAAATTTATTTTTAAGGAAA
1 ATTGATACTTT--CAACTT-TTCCTCA--AAA
9432 ATTGATACTTTCAACTTTTCCTCAAAA
1 ATTGATACTTTCAACTTTTCCTCAAAA
9459 AT
1 AT
9461 ATTTTTGGAA
Statistics
Matches: 42, Mismatches: 14, Indels: 10
0.64 0.21 0.15
Matches are distributed among these distances:
27 14 0.33
29 8 0.19
30 8 0.19
32 12 0.29
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (27 bp):
ATTGATACTTTCAACTTTTCCTCAAAA
Found at i:9460 original size:117 final size:115
Alignment explanation
Indices: 9310--9583 Score: 403
Period size: 117 Copynumber: 2.3 Consensus size: 115
9300 TCTTGCGCAG
* *
9310 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTT-AATTT-AGAGGAAG
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATT-TTTGGAAACTTTGAATTTCA-AGGAAA
9373 ATTGATACTTTCAACTTTTCCTCAAAAA-TTGATTTTTTGAAAATTTATTTTTAA
63 ATTGATACTTTCAACTTTTCCTCAAAAACTT--TTTTTTGAAAATTTATTTTTAA
*
9427 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGGAAACTTTGATTTTCAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTGGAAACTTTGAATTTCAAGGAAAAT
*
9492 TGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAA
65 TGATACTTTCAACTTTTCCTCAAAAA-CTTTTTTTTGAAAATTTATTTTTAA
9544 GGAAAATTGAT-CTTTCAACTTTTCCCCAAAAATATATTTT
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATAT-TTTT
9584 TTTATTTTTA
Statistics
Matches: 146, Mismatches: 4, Indels: 14
0.89 0.02 0.09
Matches are distributed among these distances:
116 32 0.22
117 110 0.75
118 2 0.01
119 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (115 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTGGAAACTTTGAATTTCAAGGAAAATT
GATACTTTCAACTTTTCCTCAAAAACTTTTTTTTGAAAATTTATTTTTAA
Found at i:9609 original size:5 final size:5
Alignment explanation
Indices: 9601--9696 Score: 65
Period size: 5 Copynumber: 18.6 Consensus size: 5
9591 TTATTTAAAG
* *
9601 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAATT AAAA- AAATT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAA-T AAAAT AAAAT
* *
9646 AAAATT AAAA- AAATT AAAACA AAAAT AAAAAT AAAAAT AAAAT AAAAT
1 AAAA-T AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT AAAAT AAAAT
9694 AAA
1 AAA
9697 GGTAAAAAGG
Statistics
Matches: 73, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
3 3 0.04
4 6 0.08
5 34 0.47
6 25 0.34
7 5 0.07
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:9664 original size:47 final size:47
Alignment explanation
Indices: 9601--9693 Score: 118
Period size: 48 Copynumber: 2.0 Consensus size: 47
9591 TTATTTAAAG
* * * *
9601 AAAATAAAATAATAAAAC-AAAATAAAAGTGAAAATTAAA-AAAATT
1 AAAATAAAAAAATAAAACAAAAATAAAAATAAAAATAAAATAAAATT
9646 AAAATTAAAAAAATTAAAACAAAAATAAAAATAAAAATAAAATAAAAT
1 AAAA-TAAAAAAA-TAAAACAAAAATAAAAATAAAAATAAAATAAAAT
9694 AAAGGTAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
45 4 0.10
46 7 0.17
47 6 0.15
48 18 0.45
49 5 0.12
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.19
Consensus pattern (47 bp):
AAAATAAAAAAATAAAACAAAAATAAAAATAAAAATAAAATAAAATT
Found at i:9669 original size:12 final size:12
Alignment explanation
Indices: 9639--9692 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
9629 TGAAAATTAA
9639 AAAAATTAAAATT
1 AAAAATTAAAA-T
*
9652 AAAAAAATTAAAAC
1 --AAAAATTAAAAT
*
9666 AAAAATAAAAAT
1 AAAAATTAAAAT
9678 AAAAA-TAAAAT
1 AAAAATTAAAAT
9689 AAAA
1 AAAA
9693 TAAAGGTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
11 9 0.26
12 15 0.43
15 11 0.31
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.19
Consensus pattern (12 bp):
AAAAATTAAAAT
Found at i:9703 original size:48 final size:46
Alignment explanation
Indices: 9601--9704 Score: 113
Period size: 48 Copynumber: 2.2 Consensus size: 46
9591 TTATTTAAAG
* * * *
9601 AAAA-TAAAATAATAAAACAAAATAAAAGTGAAAATTAAAAAAATT
1 AAAAGTAAAAAAATAAAACAAAATAAAAATGAAAAATAAAAAAAAT
*
9646 AAAATTAAAAAAATTAAAACAAAAATAAAAAT-AAAAATAAAATAAAAT
1 AAAAGTAAAAAAA-TAAAAC-AAAATAAAAATGAAAAATAAAA-AAAAT
*
9694 AAAGGTAAAAA
1 AAAAGTAAAAA
9705 GGACACTAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
45 4 0.08
46 7 0.14
47 15 0.31
48 23 0.47
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (46 bp):
AAAAGTAAAAAAATAAAACAAAATAAAAATGAAAAATAAAAAAAAT
Found at i:9704 original size:47 final size:45
Alignment explanation
Indices: 9601--9704 Score: 104
Period size: 47 Copynumber: 2.2 Consensus size: 45
9591 TTATTTAAAG
* * *
9601 AAAA-TAAAATAATAAAACAAAATAAAAGTGAAAATTAAAAAAATT
1 AAAAGTAAAA-AATAAAACAAAATAAAAATGAAAAATAAAAAAAAT
*
9646 AAAATTAAAAAAATTAAAACAAAAATAAAAAT-AAAAATAAAATAAAAT
1 AAAAGT-AAAAAA-TAAAAC-AAAATAAAAATGAAAAATAAAA-AAAAT
*
9694 AAAGGTAAAAA
1 AAAAGTAAAAA
9705 GGACACTAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
45 4 0.08
46 3 0.06
47 24 0.49
48 18 0.37
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (45 bp):
AAAAGTAAAAAATAAAACAAAATAAAAATGAAAAATAAAAAAAAT
Found at i:9763 original size:20 final size:19
Alignment explanation
Indices: 9727--9778 Score: 86
Period size: 20 Copynumber: 2.7 Consensus size: 19
9717 AACCTAATCT
*
9727 AATAAATAAAAAATAAATA
1 AATAAAAAAAAAATAAATA
9746 AATAAAAAAAATAATAAATA
1 AATAAAAAAAA-AATAAATA
9766 AATAAAAAAAAAA
1 AATAAAAAAAAAA
9779 CCTAGAGCGG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 12 0.39
20 19 0.61
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (19 bp):
AATAAAAAAAAAATAAATA
Found at i:9764 original size:24 final size:23
Alignment explanation
Indices: 9730--9778 Score: 80
Period size: 24 Copynumber: 2.1 Consensus size: 23
9720 CTAATCTAAT
9730 AAATAAAAAATAAATAAATAAAAA
1 AAATAAAAAATAAATAAA-AAAAA
*
9754 AAATAATAAATAAATAAAAAAAA
1 AAATAAAAAATAAATAAAAAAAA
9777 AA
1 AA
9779 CCTAGAGCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (23 bp):
AAATAAAAAATAAATAAAAAAAA
Found at i:9778 original size:4 final size:4
Alignment explanation
Indices: 9727--9771 Score: 58
Period size: 4 Copynumber: 11.5 Consensus size: 4
9717 AACCTAATCT
*
9727 AATA AATA AA-A AATA AATA AATA AA-A AAAA TAATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA -AATA AATA AATA AA
9772 AAAAAAACCT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
3 6 0.16
4 28 0.76
5 3 0.08
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:10184 original size:26 final size:26
Alignment explanation
Indices: 10148--10200 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10138 GTTGACTTAG
*
10148 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
10174 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
10200 G
1 G
10201 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:11084 original size:26 final size:26
Alignment explanation
Indices: 11048--11100 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11038 GTTGACCTAG
*
11048 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
11074 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
11100 G
1 G
11101 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:11982 original size:26 final size:26
Alignment explanation
Indices: 11946--11998 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11936 GTTGACTTAG
11946 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
11972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11998 G
1 G
11999 ATGAGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12363 original size:885 final size:886
Alignment explanation
Indices: 9949--13323 Score: 4397
Period size: 885 Copynumber: 3.8 Consensus size: 886
9939 TCGACAAAAC
* * *
9949 GCGTAGTGCCCGCCCGCCCGCTCGCTTCGTCGGTTGGCTTAGGCATACGGAGTTCCTT-CCAGTC
1 GCGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * ** * * * *
10013 TAAGATCGGA-CCGAACCGAGGGTTACAATAGTAGGATCGCCAGCACGATGAGGGGGA-CCGGCC
66 TAAGATCGGATCTG-ACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCTGAGGGGGACCCGACC
* ** * * *
10076 AATCCCCGGCTTGCATATCTTGCCCCTCTCGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
130 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
10141 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCGG
195 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * *
10206 ACCAGACTGAAGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGATGCTGTA-TTTTTTTC
260 ACCAAACTGAAGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTC
* * * * *
10270 GCCTGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
325 -CCTGGAG--CCA-C--C--ATCATCG-CG-AGAACCTGACCGACAGCATTAGGGTTCCGACGAT
* * *
10335 TGGGGGGGGCGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
380 T--GGGGGGCGGGGGGTGTGCGAACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGG
*
10400 CCCCCTATCCCTCATCAAACCGCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
443 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
10465 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
508 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
* * * ** *
10530 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCACGAAAATAAAAGGATCACGTCT
573 TATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * * * *
10595 CCCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTT-GAAAAATCCCAAACCGTAAAAAGTTT
638 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTT
* *
10659 TAAAAATCGTGAAAAATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
703 TAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
*
10724 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTA
768 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
*
10789 AACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCG
833 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* * *
10843 ACGTAGTGCCCGCCCGCCCACCCGCTCGTTTTGTAGGCTGGCTTAGGCATACGGAGTTCATTCCC
1 GCGTAGTGCCCGCCCG----CCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * *
10908 AGTCTAAGATC-AAACTGGATCGAGGGTTGCGGCAGCAGGATTGACAGTACACTGAGGGGGATCC
62 AGTCTAAGATCGGATCT-GACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCTGAGGGGGACCC
* * * * ** * *
10972 AATCGATCCTCGGCTTGTGCATCCTGCCCCTCTGGCCAACTGAGCGCCTGTACGCTCGTTTCGTG
126 GACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
11037 GGTTGACCTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGA
191 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * * **
11102 TCAGACTGAACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGGGCCACATTTTT
256 TCAGACCAAACTGAAGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
* * *
11167 TTTCGCTCGAGCCACCATCGCCGGAGCATCGCCAGAGAACTTGACCGACAGCATTAGGGTTCCGA
321 TTTCCCTGGAGCCACCAT--------CATCG-C-GAGAACCTGACCGACAGCATTAGGGTTCCGA
* *
11232 CGATTGGGGGAGCCGGGGGGTGTGCGCAA-ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
376 CGATTGGGGG-G-CGGGGGGTGTGCG-AACATGATGTGCGATGGGTACTAGTACTTGGCCCTTAT
* *
11296 ATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTT
438 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
11361 TCAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
503 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
11426 AATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCAAAAAAAAATACAAGGATCA
568 AATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
** * * *
11491 CGTCTACCGTGTTTGGTGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCCCGAACCATAAAA
633 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAA
* *
11556 AGTTTTAAAAATCAT-AACAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACATGAAGGCTT
698 AGTTTTAAAAATCATGAA-AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* *
11620 AAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATG
762 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* *
11685 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGCCTCTCTGGTCG
827 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* * *
11745 GCGTAGTGCCTGCTCGCCCGCTCGTTTCT-TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGT
1 GCGTAGTGCCCGCCCGCCCGCTCGTTT-TGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * *
11809 CTAAGATCGGATCTGACCGAGGGTTGCAGTAGCAAGATCGACAGCATGCTGTGGTGAACCCGATC
65 CTAAGATCGGATCTGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCTGAGGGGGACCCGACC
* * * * * *
11874 GTTCCCCGACTTACGTATCCTGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTACGTGGGTT
130 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
11939 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGAG
195 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* *
12004 ATCAAACTGAAGGTTACGGGTGCACATGCTGGGCTTGGGCATGTGCT-GTGCCGTATTTTTTTTC
260 ACCAAACTGAAGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTC
* * * * *
12068 TTCCT-G-GCCACCATCATCG-GAGGACCTGACCGGCGGCATTAGGGTTCAGGCGATTGGGGGGC
325 --CCTGGAGCCACCATCATCGCGAGAACCTGACCGACAGCATTAGGGTTCCGACGATTGGGGGGC
* * *
12130 GGGGCGGTGTGCGAACATGATGTGTGATGGGAACTAGTAGTTGGCCCTTATATTGGCCCCCTATC
388 GGGG-GGTGTGCGAACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGGCCCCCTATC
*
12195 CCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
452 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
**
12260 AGTAGAAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTT
517 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTT
* *
12325 CGAGGTTTTAGCTGAATTTTTCTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
582 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
12390 GGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
647 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCA
12455 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
712 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
* * *
12520 GAATTTACAATCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACTT
777 GAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
12585 TCCACCCTATCGATACAAGGCTTACGCATCCCGCCTCTCTGGCCG
842 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
** *
12630 GCACAGT----GCCCG--C-CT-GTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTC
1 GCGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * *** * * *
12687 TAAGATCAGATCGGACCGAGGGTTTTGGCAACAGGATC-AGCAACACGCTGAGGGGGACTCGACC
66 TAAGATCGGATCTGACCGAGGGTTGCAGCAGCAGGATCGA-CAGCACGCTGAGGGGGACCCGACC
* * * * * * *
12751 GATCCCTGGCTTGTGCATCTTGCCCCTCTGGTCGGTTGAGCACCCGCACGCTCATTTCGTGGGTT
130 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
12816 GACTTAGGCATACGGTGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGGTCAG
195 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** *
12881 ACCGGA-TCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTT
260 ACCAAACT-GAAGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTT
* * * *** * *
12945 GCCC--GAGCCACCATCGTTG-GGGAACCTGACCGACAATGTTGGGGTTTCGACGATT-------
324 -CCCTGGAGCCACCATCATCGCGAGAACCTGACCGACAGCATTAGGGTTCCGACGATTGGGGGGC
*
13000 GGGGGGTGTGCGCACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGGCCCCCTATCC
388 GGGGGGTGTGCGAACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
13065 CTCATCAAACCTCAAGAACTCACACCCCCGTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCA
453 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
13130 GTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAAACGGTCACAAAATCCTATACATTT
518 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCCTATACACTT
* * * * *
13195 TGACTTTTTAGCTGAATTTTTTTGTGCATGCTC-ACAAAAATACGAGGATCACGTCTACAAAGTT
582 CGAGTTTTTAGCTGAATTTTTTTGTGCATGC-CAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
13259 TGGGCCCAAAACTCCTTCAGAAAAAAATTTAAAAAAATCCCGAGCCGTAAAAAGTTTTGAAAATC
646 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATC
13324 CCGAGCTCGT
Statistics
Matches: 2174, Mismatches: 269, Indels: 100
0.85 0.11 0.04
Matches are distributed among these distances:
869 152 0.07
870 140 0.06
871 1 0.00
876 4 0.00
877 275 0.13
878 18 0.01
879 2 0.00
881 4 0.00
884 7 0.00
885 456 0.21
886 37 0.02
889 5 0.00
893 1 0.00
894 15 0.01
895 1 0.00
897 23 0.01
898 286 0.13
899 57 0.03
900 168 0.08
901 313 0.14
902 209 0.10
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
GCGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCGGATCTGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCTGAGGGGGACCCGACCG
ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCAAACTGAAGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCC
CTGGAGCCACCATCATCGCGAGAACCTGACCGACAGCATTAGGGTTCCGACGATTGGGGGGCGGG
GGGTGTGCGAACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
Found at i:12861 original size:26 final size:26
Alignment explanation
Indices: 12823--12875 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12813 GTTGACTTAG
*
12823 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12849 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12875 G
1 G
12876 GTCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13540 original size:26 final size:26
Alignment explanation
Indices: 13510--13562 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13500 GTTGACTTAG
13510 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13536 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13562 G
1 G
13563 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13981 original size:687 final size:677
Alignment explanation
Indices: 12645--13981 Score: 1820
Period size: 687 Copynumber: 1.9 Consensus size: 677
12635 GTGCCCGCCT
* * * * *
12645 GTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGATCGGACCGAGGGT
1 GTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGATCAGACCGACGGT
** * *** * *
12710 TTTGGCAACAGGATCAGCAACACGCTGAGGGGGACTCGACCGATCCCTGGCTTGTGCATCTTGCC
66 TACGGCAACAGGATCAGCAACACGCTGAGGGGGACCCGACCGATCCCCAACTTGTGCATCCTACC
* *
12775 CCTCTGGTCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGTGTTCATTC
131 CCTCTGGTCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
12840 CCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGGTCAGACCGGATCGAGGGTTACGGGTGCA
196 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGGTGCA
* * ** *** *
12905 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTGCCCGAGCCACCATCGTTGGGGAAC
261 CATGCTAGGCTCGAGCATGCACTGGTGCCGTATTTTTTTTGCCCGAGCCACCATCACCGGAGAAC
** *
12970 CTGACCGACAATGTTGGGGTTTCGACGATTGGGGGGTGTGCGCACATGATGTGCGATGGGTACTA
326 CTGACCGACAACATTGGGGTTCCGACGATTGGGGGGTGTGCGCACATGATGTGCGATGGGTACTA
13035 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCGTAAAG
391 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCGTAAAG
* *
13100 AGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTT
456 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
13165 TTCAAAACGGTCACAAAATCCTATACATTTTGACTTTTTAGCTGAATTTTTTTGTGCATGCTCAC
521 TTCAAAACGGTCACAAAATCCTATACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCTCAC
*
13230 AAAAATACGAGGATCACGTCTACAAAGTTTGGGCCCAAAACTCCTTCAGAAAAAAATTTAAAAAA
586 AAAAATACAAGGATCACGTCTACAAAGTTTGGGCCCAAAACTCCTTC--------A--TAAAAAA
13295 ATCCCGAGCCGTAAAAAGTTTTGAAAATCCCGAGCTC
641 ATCCCGAGCCGTAAAAAGTTTTGAAAATCCCGAGCTC
* *
13332 GTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGATCAGACTGACGGT
1 GTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGATCAGACCGACGGT
* * * ** *
13397 TACGGTAGCAGGATCAGCAGCATTCTGAGGGGGACCCGATCGATCCCCAACTTGTGCATCCTACC
66 TACGGCAACAGGATCAGCAACACGCTGAGGGGGACCCGACCGATCCCCAACTTGTGCATCCTACC
* *
13462 CCTCTGGTCGGTTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
131 CCTCTGGTCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
*
13527 CCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTACGGGTGC
196 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTACGGGTGC
* * * * *
13591 ACATGCTAGGCTCGAGCATGCACTGGTGCCGTATTTTTTTTCGGCTGGGCCACCATTACCGTAGA
260 ACATGCTAGGCTCGAGCATGCACTGGTGCCGTATTTTTTTT-GCCCGAGCCACCATCACCGGAGA
** **
13656 ACCTGACCGACGGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGGGGGGTGTGCGCACATGATGT
324 ACCTGACCGACAACATTGGGGTTCCGACGATT-----------GGGGGGTGTGCGCACATGATGT
* * *
13721 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
378 GCGATGGGTACTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
13786 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAA
443 CACCCCCGTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
13851 TGGGGACACTTTTTTC-AAATGGTC-CAAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
508 TGGGGACACTTTTTTCAAAACGGTCAC-AAAATCCTATACACTTCGACTTTTTAGCTGAATTTTT
* * * *
13914 TTGTGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTGCTTC-TA
572 TTGTGCATGCTC-ACAAAAATACAAGGATCACGTCTACAAAGTTTGGGCCCAAAACTCCTTCATA
13977 AAAAA
636 AAAAA
13982 TTTTAAAAAA
Statistics
Matches: 569, Mismatches: 66, Indels: 30
0.86 0.10 0.05
Matches are distributed among these distances:
686 1 0.00
687 272 0.48
688 39 0.07
697 2 0.00
698 94 0.17
699 161 0.28
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (677 bp):
GTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGATCAGACCGACGGT
TACGGCAACAGGATCAGCAACACGCTGAGGGGGACCCGACCGATCCCCAACTTGTGCATCCTACC
CCTCTGGTCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGGTGCA
CATGCTAGGCTCGAGCATGCACTGGTGCCGTATTTTTTTTGCCCGAGCCACCATCACCGGAGAAC
CTGACCGACAACATTGGGGTTCCGACGATTGGGGGGTGTGCGCACATGATGTGCGATGGGTACTA
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCGTAAAG
AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAAACGGTCACAAAATCCTATACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCTCAC
AAAAATACAAGGATCACGTCTACAAAGTTTGGGCCCAAAACTCCTTCATAAAAAAATCCCGAGCC
GTAAAAAGTTTTGAAAATCCCGAGCTC
Found at i:14441 original size:25 final size:26
Alignment explanation
Indices: 14400--14451 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
14390 GTTGACTTAG
* *
14400 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGGCTAA
14426 GCATAC-GAGTTCATTCCCAGGCTAA
1 GCATACAGAGTTCATTCCCAGGCTAA
14451 G
1 G
14452 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGGCTAA
Found at i:16219 original size:25 final size:26
Alignment explanation
Indices: 16185--16236 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
16175 GTTGACTTAG
16185 GCATACGGAGTTAATTCCAG-TCTAA
1 GCATACGGAGTTAATTCCAGATCTAA
* * *
16210 GCATATGGAGTTCATTCCCGATCTAA
1 GCATACGGAGTTAATTCCAGATCTAA
16236 G
1 G
16237 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCAGATCTAA
Found at i:17130 original size:26 final size:26
Alignment explanation
Indices: 17081--17133 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17071 GTTGACTTAG
*
17081 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
17107 GCATACGGAGTTCATTGGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17133 G
1 G
17134 ACCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18356 original size:889 final size:888
Alignment explanation
Indices: 13328--21427 Score: 10103
Period size: 889 Copynumber: 9.1 Consensus size: 888
13318 AAAATCCCGA
* * * *
13328 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGATC-AGACTG
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCG
* * * * ** * ** *
13392 ACGGTTACGGTAGCAGGATCAGCAGCATTCTGAGGGGGACCCGATCGATCCCCAACTTGTGCATC
65 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * * * *
13457 CTACCCCTCTGGTCGGTTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
130 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * *
13522 CATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGG
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* * ** * * * * **
13587 GTGCACATGCTAGGCTCGAGCATGCACTGGTGCCGTATTTTTTTTCGGCTGGGCCACCATTACCG
260 GTGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGCCACCATCGCCG
* **
13652 TAGAACCTGACCGACGGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGGGGGGTGTGCGCACATG
325 GAGAACCTGACCGACGGCATT-GGGTTCCGACGATT--GGGGG-CGGGGGGGGTGTGCGCACATG
*
13717 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
386 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
* *
13782 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAGGTGTCT
451 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
13847 GAAATGGGGACACTTTTTTCAAATGGTC-CAAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
516 GAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* *
13911 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTGCTTCT
580 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
**
13976 -AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG-AAACGAG
645 GAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
14039 TCGTCTTGTCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT-TGAATTTACAAGCCATAAA
710 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
14103 AATGGCATTTGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCAC
775 AATGGCATTGGCATGGC-AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * **
14168 GGGTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCTTGCCCGCCC
839 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
* * * *
14218 GCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGA
* * * * * * * *
14283 GGGCTGCGGCAGCAAGATCGGCATCATGCTGAGGGGGACCC-AGCCTATCCCCAGCTTGCGCATC
66 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATC
* * * *
14347 CTGCCCCTCTAGCCGGCTGAGCGCCCGCACACTCCTTTCGTGGGTTGACTTAGGCATACAGAGTT
130 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * ** *
14412 TATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGGCTAAGATCAGACTGGAATGAGGGTTACGG
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* * * *
14476 GTGGACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGCCACCATCGTCG
260 GTGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGCCACCA---TC-
* * * * * *
14541 GAGCATCGCCAGAGATCCTTACCGACGACATTTGGGTTCTGACAATTGGGGGGGCCGGGGTGGGT
321 --GC--CG---GAGAACCTGACCGACGGCA-TTGGGTTCCGACGATT--GGGGG-CGGGGGGGGT
* * * * * * *
14606 GTACGAACATGATGTGTGATGGGTGCTAGTACGTGGCCCTTATGTTGGCCCCCTGTCCCTCATCA
375 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
14671 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
440 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
14736 TTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTT
505 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTT
* * * *
14801 TAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGACCACATCTACCAAGTTTGGGGCCAA
570 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
14866 AACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAAT
635 AACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* *
14931 AGAAAACGAGTCATCTTGCCATGAAACTT--CATGAAGGCTTAAAGGACCATTGTATGAATTTAC
700 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
14994 AAGCCATAAAAATGACATTGGCATGGTAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCT
765 AAGCCATAAAAATGGCATTGGCATGGCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
15059 GTCGA-CACACGGCTTGCGCATCCCGCCACTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
829 ATCGATC-CACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
** *
15119 GCTCGTTTCGTCATTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGA
* * * ** * *
15184 GGGTTGTGGTAGCAGGATTGGCAGCACGTTGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCC
66 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * * *
15249 TACCCCTTTGGCCGGCTCAGTGCCCGGACGCTCGTTTCGTGGGTTGACTTAGG----CGGAGTTC
131 TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * ** * *
15310 ATTCCCAGAT-TAAGCATACCGAGTTCATTCCAAGTCTAAGATTGGATCGGACCGAGGGTTGTGG
196 ATTCCCAG-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* * * * *
15374 GTGCACATGCTGGGCTCAGACATGTACTGGTGTCAG-ATTTTTTTTCACCCGGGCCACCATCACC
260 GTGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCATTTTTTTTCGCCCGGGCCACCATCGCC
* * *
15438 GGAGAACCTGACCGACGGCATTGAGGTTTCGGCGATTTGGAGGC--GGGGGGTGTGCGCACATGA
324 GGAGAACCTGACCGACGGCATTG-GGTTCCGACGA-TTGGGGGCGGGGGGGGTGTGCGCACATGA
* *
15501 TGTGCAATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
387 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
*
15566 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
452 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
15631 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGGTGAA-TTT
517 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
15695 TTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
582 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* *
15760 AAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
647 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
15825 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAACATTGTATGAATTTACAAGTCATAAAAA
712 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
**
15890 TGGCATTGGCATGGCAAAAATATGAAGATGTAACTAAACCCACCTACCACCCTATCGATCCACGG
777 TGGCATTGGCATGGC-AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * *
15955 CTTGCGCATCCCGCCTCTCTGGTCGGTGTAGTGCCTGCCTGCCCGCCC
841 CTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
* * * * * * * * *
16003 GCTCGTTTCATCGGTTCGCTTAGGCTTACGAAGTTCGTTCCCAATCTAAGATTAGACC-AGATCA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCG
* * * * * * * *
16067 AGGGTTGCGGTAGTAGGATTGGTAGCACACTGAGGGGGACCTGACCGATCCCCGGCTTGCGCATC
65 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * *
16132 CTGCCTCTCAGGCCGGCTGAGGGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
130 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
16197 AATT-CCAGTCTAAGCATATGGAGTTCATTCCC-GATCTAAGATTAGACCGGACCGAGGGCTACG
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCGGACCGAGGGTTGCG
* * * * * *
16260 GTTGTACATGCTGGACTCAGGCATGTGCTGGTGCTGCTTTTTTTTTTCGCCCGGGCCACCATCGT
259 GGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGC-ATTTTTTTTCGCCCGGGCCACCA---T
* * *
16325 CGGAGCATCTCCGGAGAACCTGATCGACGACGTTGGGGTTCCGACGATTGGGGGGGCGGGGGGGG
320 C---G-----CCGGAGAACCTGACCGACGGCATT-GGGTTCCGACGATT--GGGGGCGGGGGGGG
* *
16390 TGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATC
374 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
16455 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTATCC
439 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* ** * * * *
16520 ATTCAAGTGTCTGAAATGATGACACTTTTTTCAAATGATCACAAAATCCTATACATTTTGAGTTT
504 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
* * *
16585 TTAGCTGAATTTTTTT-TGTATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCA
569 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
16649 AAAATCCTTCTGAAAAAATTTTAAAAAATTC-CTGAACCGTAAAATGTTTCAAAAATCATGAAAA
634 AAACTCCTTCTGAAAAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * *
16713 ATAGAAAATGAGTTGTCTTGCC-----ACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTT
698 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
* ** * * * *
16773 ACAAGCCATAAAAATGGCATTGGCACGAAAAAAATTTAAAGATATGCCTAAACCCACTTACCACC
763 ACAAGCCATAAAAATGGCATTGGCATG-GCAAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
16838 CTATCGATCCACGGCTTGCGCATCCCGCCTC-CTTGGCCGACATAGTGCCCGCCTGCCCACCC
827 CTATCGATCCACGGCTTGCGCATCCCGCCTCTC-TGGCCGACGTAGTGCCCGCCCGCCCGCCC
*
16900 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACTG
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCG
* * *
16964 AGGGTTGCGGCAGCAGGATTGGCAGCACGCAGA-GGGGACCTGGTCGATCCCCGGCTTGCGCATC
65 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * *
17028 CCGCCCCTTTGGCCGGCTGA-CAGCCCGCACGTTCGTTTCGTGAGTTGACTTAGGCATACGGAGT
130 CTGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* ** * * * *
17092 TCATTCCCTGTCTAAGCATACGGAGTTCATTGGCAGTCTAAGACCGGACCGAACCGAGGGTTGTG
194 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
* * * * **
17157 GGTGCACATGCTTGGG-TCAGG-ATGTGCTTGTGCCA-TATTTTTTTTCACCCAAGCCACCATCG
259 GGTGCACATGC-TGGGCTCGGGCATGTGCTGGTG-CAGCATTTTTTTTCGCCCGGGCCACCAT--
*
17219 CCGGAGCATCGTCAGAGAACCTGACCGACGGCATTAGGGTTCCCG-CGATTGGGGG-GGCCGACG
320 -C---GC--CG---GAGAACCTGACCGACGGCATT-GGGTT-CCGACGATTGGGGGCGG--G-GG
* * * *
17282 GGGTGTGCACACATGATGTCCGATAGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTC
371 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
17347 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTACTGCCAGTA
436 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
17412 ACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
501 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
*
17477 TTTTTAGGTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
566 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
17542 CCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTCGAGCCGTAAAAAGTTTTAAAAATCGTGAA
631 CCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAA
*
17607 AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
696 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* *
17672 TTACAAGCCATAAAAATGGCATTGGCATGGCAAAATATGAAGATGTTCCTAAACCCACCCACCAC
761 TTACAAGCCATAAAAATGGCATTGGCATGGCAAAATATGAAGATGTGCCTAAACCCACCTACCAC
** * * *
17737 CCTATCGATCCACGATTTGCACATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
826 CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
* * * ** ** * * *
17800 GTTCATTTTGTCGGTACGCTTAGGTGTATGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCAA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGA
* * ** *
17865 GGGTTGCGGTAGCAGGATCGACAGCACAAAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCC
66 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * * *
17930 TACCCCTCTGGCCGGCTGAGCGCCTGCACGCTTGTTCCGTGGGTTGACATAGGCATACGGAGTTC
131 TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
** * * * ** *
17995 ATTCCCAGTCTAAGCATACATAGTTCATTCCCAATATAAGATCAGACCAGATTGAGGGTTACGGG
196 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGG
* * * * *
18060 TGCACATGCTGGGCTGGGGCATGTGCTGGTGCAGCATTTTTCTTCACTCGGGACACCATCGCCGG
261 TGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGCCACCATCGCCGG
* * * *
18125 GGAACCTGACCGACGGCACTGGGTTCCGATGATTGGGGGACGGGGGGGGTGTGTGCACATGATGT
326 AGAACCTGACCGACGGCATTGGGTTCCGACGATTGGGGG-CGGGGGGGGTGTGCGCACATGATGT
*
18190 GCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
390 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
18255 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
455 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
18320 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTGT-GAGTTTTTAGCTAAATTTTTT
520 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT-TCGAGTTTTTAGCTGAATTTTTT
* ** *
18384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGTGAGAAA-TCCTTCAGAA
584 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCTGAA
* * * *
18448 AAATTTTTTAAAAAATC-CTGAGCCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTC
648 AAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
18512 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCAAAAAAA
712 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* ** *
18577 TGGCATTGACATGGCAAAATATGAAGATGTGTGTAAACCCACCTACCACCCTATCGATCCATGGC
777 TGGCATTGGCATGGCAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
18642 TTGCGCATCCTGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTC
842 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
* ** ** * *
18689 GCTCATTTTATCAATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-AGACTG
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCG
* * * * * * *
18753 AGGGTTACGGCAGCAGGATCGGCAGCACGAAGA-GGGGACCTGGTTGATCCTC-GCTTGTGCATC
65 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * * *
18816 TTGCCCCTCTGGTCGGTTGAGCGCCCGCACGCTTGTTCCGTGGGTTGACTTAGGCATACGGAGTT
130 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
*
18881 CATTCCCAGTCTAAG-AT-C--AG---A---CC-G-----GAT----------TGAGGGTTGCGG
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
18920 GTGCACATGCT-GGCTCGGGCATGTGCTGGTGTCA-CATTTTTTTTCGCCCGGGCCACCATCGTC
260 GTGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCATTTTTTTTCGCCCGGGCCACCA---TC
* * *
18983 GGAGCATCGTCAGAGAACCT-AACAAGCGGCATTGGGATTCCAACGATTGGGGG-GGCCGGGGGG
321 ---GC--CG---GAGAACCTGACCGA-CGGCATTGGG-TTCCGACGATTGGGGGCGG--GGGGGG
* * * * * *
19046 TATACTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTTTTGGCCCACTATCCCTCATC
374 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
** * *
19111 AAACCTTGAGAAATCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
439 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
19176 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTT
504 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
* * * * *
19241 TTAGGTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATTTTCTAAGTTTGGGGCCA
569 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** * * *
19305 AAAATATTTCTGAAAAAATTTTAAAAAAATCTTGAACCATAGAAAGTTTCAAAAATCGTGAAAAA
634 AAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* * *
19370 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACATAAAAGCTTAAGGGACCATTGTATGAATTTA
699 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
19435 CAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
764 CAAGCCATAAAAATGGCATTGGCATGGCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
19500 TATCGATCCACAGCTTGTGCATCTCGCCTCTCTGGCCAACGTAGTGCCCGCTCGCCCGCCC
828 TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
* * * * * *
19561 GCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCATGTCAG-ACTG
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGAACCG
* * ** * * ** *
19625 AGGGTTGCAGCAGCAGGGTATGCAGCATGCAGAGGGGGACCCGGTCGATCCCCTACTTGCACATC
65 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * **
19690 CTGCCCCTTTGGCCGGCTGAGCGCCCGCACACTCATTTCGTGCATTGACTTAGGCATAC-GAGTT
130 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
19754 CATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCGGAGCGAGGGTTGTGG
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* * * *
19819 GTGCAAATGCTGGGGTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGCCACCATCGCTG
260 GTGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGCCACCAT--C--
** *
19884 GAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGGTGATTGGGGG-GTCGGGGGGTGT
321 --G---C--CGGAGAACCTGACCGACGGCATTG-GGTTCCGACGATTGGGGGCG-GGGGGGGTGT
* * * *
19948 GCGCAAATAATGTGCGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTTATCAAA
377 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
20013 CCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTTCTACCAGTAGCCATT
442 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
20078 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT-
507 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
*
20142 GCCT-AA-ATTTTTGTGCATGCCAACAAAAATACAA-GATCACGTCTACCAAGTTTGGGGCCAAA
572 G-CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * **
20204 ACTCCTTCTGAAAAAACTTTAAAAAAATCCCGAGCCGTAAAAATTTTTGAAAATCGTG-AAAATA
636 ACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
*
20268 GAAAACTAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
701 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
20333 AGTCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAACCCCACCTACCACCCTA
766 AGCCATAAAAATGGCATTGGCATGGCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
20398 TCGATCCACGGCTTGCGCATCCCGCTTCTCTGGCCGACGTAGTGCCCGCCTGCCAGCCC
830 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
* * * *
20457 GGTCGTTTCGTCTGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGA
* * * * * ** **
20522 GGGTTGTGGCAGTAGGATCGGCAGCACGCTGAGCGGGACCCGACCGATCCCTAGCTTTTGCATCC
66 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * ** * * * * *
20587 T-ACCCTCTGGCTGGCTTTGTGCCTGCACGCTCGTTTCATGGGCTCACTTAGGCATACGGAGTTC
131 TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * *
20651 ATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGATGGTTGTGGG
196 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGG
* * * * ** * *
20716 TACACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTTTTTACCCGGGGCACCATCGTCGG
261 TGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGCCACCATCGCCGG
* * * *
20781 AGAACCTGA-C--CGGCATTGCGATTCCGGCGATTGGGGG-GGCAGGGGGTGTGCGTACATGATG
326 AGAACCTGACCGACGGCATTG-GGTTCCGACGATTGGGGGCGG-GGGGGGTGTGCGCACATGATG
* * *
20842 TGCGATGGGTGTTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTT
389 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
20907 ACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCTATTAAAGTGTCTGAA
454 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
20972 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTT
519 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
21037 TGTGCGTGGCAACAAAAAGACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCCATCTGAAA
584 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
21102 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTGAAAAATCGTAAAAAATAGAAAACAAGTCAT
649 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
21167 CTTGCCATGAAACTTCACATGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
714 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
21232 GCATTGGCATGACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
779 GCATTGGCATGGCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
21297 TGTGCATCCCACCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGTCCACCCGCCC
843 TGCGCATCCCGCCTCTCTGGCCGACGTA--G--TGCCCGCCCG----CCCGCCC
* * * * *
21351 ACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCGGACCAAACCAA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGA
*
21416 GGATTGCGGCAG
66 GGGTTGCGGCAG
21428 TCGGATTGGT
Statistics
Matches: 6270, Mismatches: 765, Indels: 346
0.85 0.10 0.05
Matches are distributed among these distances:
860 39 0.01
861 24 0.00
863 2 0.00
866 2 0.00
868 2 0.00
870 8 0.00
871 206 0.03
872 370 0.06
873 38 0.01
874 59 0.01
875 1 0.00
877 4 0.00
880 2 0.00
882 357 0.06
883 203 0.03
884 321 0.05
885 93 0.01
886 180 0.03
887 182 0.03
888 50 0.01
889 649 0.10
890 214 0.03
891 21 0.00
892 9 0.00
893 5 0.00
894 76 0.01
895 297 0.05
896 628 0.10
897 384 0.06
898 119 0.02
899 240 0.04
900 562 0.09
901 541 0.09
902 372 0.06
903 10 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGA
GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGG
TGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGCCACCATCGCCGG
AGAACCTGACCGACGGCATTGGGTTCCGACGATTGGGGGCGGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGGCAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
Found at i:19771 original size:25 final size:26
Alignment explanation
Indices: 19743--19794 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19733 ATTGACTTAG
*
19743 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
19768 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
19794 G
1 G
19795 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:20668 original size:26 final size:26
Alignment explanation
Indices: 20638--20690 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20628 GCTCACTTAG
*
20638 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20664 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20690 G
1 G
20691 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20685 original size:896 final size:896
Alignment explanation
Indices: 18869--21403 Score: 3424
Period size: 896 Copynumber: 2.8 Consensus size: 896
18859 GTTGACTTAG
**
18869 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGGTGCACATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
18933 CTCGGGCATGTGCTGGTGTCACATTTTTTTTCGCCCGGGCCACCATCGTCGGAGCATCGTCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGCCACCATCGT-GGAGCATCGTCGGAG
* * ** * * *
18998 AACCT-AACAAGCGGCATTGGGATTCCAACGATTGGGGGGGCCGGGGGGTATACTCACATGATGT
130 AACCTGACCGA-CGGCATTGGG-TTCCGGCGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * ** *
19062 GCGATGGGTGCTGGTACTTGGCCCTTGTTTTGGCCCACTATCCCTCATCAAACCTTGAGAAATCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
19127 CACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
19192 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGGTGAATTTTTTG
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTG
* * * * * **
19257 TGCATGCCAACAAAAATACAAGGATCACATTTTCTAAGTTTGGGGCCAAAAATATTTCTGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * *
19322 ATTTTAAAAAAATCTTGAACCATAGAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
452 ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
19387 TGCCATGAAACTTCACATAAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19452 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
582 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
19517 TGCATCTCGCCTCTCTGGCCAACGTAGTGCCCG-CTCGCCCGCCCGCTCGTTTTGTCGATTGGCT
647 CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCT-GCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
19581 TAGGCATACGGAGTTCATTTCCAGTCTAAGATCATGTC-AGACTGAGGGTTGCAGCAGCAGGGTA
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACGA-ACTGAGGGTTGCGGCAGCAGGATC
* * * * * * *
19645 TGCAGCATGCAGAGGGGGACCCGGTCGATCCCCTA-CTTGCACATCCTGCCCCTTTGGCCGGCTG
774 GGCAGCACGCTGAGGGGGACCCGATCGATCCCC-AGCTTGCGCATCCT-ACCCTCTGGCCGGCTG
* * * **
19709 AGCGCCCGCACACTCATTTCGTGCATTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
837 AGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19768 GCATACGGAGTTCACTCCCAGTCTAAGATCAGACCGGAGCGAGGGTTGTGGGTGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* *
19833 GTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGCCACCATCGCTGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGCCACCATCG-TGGAGCATCGTCGGAG
* * * *
19898 AACCTGACCGACGGCATTGAGGTTCCGGTGATTGGGGGGTCGGGGGGTGTGCGCAAATAATGTGC
130 AACCTGACCGACGGCATTG-GGTTCCGGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
19963 GATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * * *
20028 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTTCTACCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
20093 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT-GCCT-AAATTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG-CTGAATTTTTTGT
20156 GCATGCCAACAAAAATACAA-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * * ** *
20220 CTTTAAAAAAATCCCGAGCCGTAAAAATTTTTGAAAATCGTG-AAAATAGAAAACTAGTCGTCTT
453 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
20284 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCA
518 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
20349 TTGGCATGGCAGAAATATGAAGATGTGCCTAACCCCACCTACCACCCTATCGATCCACGGCTTGC
583 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
20414 GCATCCCGCTTCTCTGGCCGACGTAGTGCCCGCCTGCCAGCCCGGTCGTTTCGTCTGTTGGCTTA
648 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
20479 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGTGGCAGTAGGATCGGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GAACTGAGGGTTGCGGCAGCAGGATCGGC
* * * ** * ** *
20544 AGCACGCTGAGCGGGACCCGACCGATCCCTAGCTTTTGCATCCTACCCTCTGGCTGGCTTTGTGC
777 AGCACGCTGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCTACCCTCTGGCCGGCTGAGAGC
* * * * *
20609 CTGCACGCTCGTTTCATGGGCTCACTTAGGCATACGGAGTTCATTCCTAGTCTAA
842 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
20664 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGATGGTTGTGGGTACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * ** *
20729 CTCGAGCATGTGCTGGTGCCGTATTTTTTTTTACCCGGG---GCA-C------CATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGCCACCATCGTGGAGCATCGTCGGAGA
* * * *
20784 ACCTGA-C--CGGCATTGCGATTCCGGCGATTGGGGGGGCAGGGGGTGTGCGTACATGATGTGCG
131 ACCTGACCGACGGCATTG-GGTTCCGGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
20846 ATGGGTGTTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * *
20911 ACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCTATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
20976 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTG
* * * * *
21041 CGTGGCAACAAAAAGACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCCATCTGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * *
21106 TTTAAAAAAATCTCGAACCGTAAAAAGTTTGAAAAATCGTAAAAAATAGAAAACAAGTCATCTTG
454 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
21171 CCATGAAACTTCACATGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
21236 TGGCATGACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTG
584 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
21301 CATCCCACCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGTCCACCCGCCCACTCGTTTCGTCGGT
649 CATCCCGCCTCTCTGGCCGACGTA--G--TGCCCG-CC-T--GCCCGCCCGCTCGTTTCGTCGGT
*
21366 TGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATC
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
21404 GGACCAAACC
Statistics
Matches: 1449, Mismatches: 164, Indels: 51
0.87 0.10 0.03
Matches are distributed among these distances:
882 214 0.15
883 3 0.00
884 25 0.02
885 95 0.07
886 167 0.12
888 1 0.00
890 6 0.00
891 2 0.00
892 2 0.00
893 2 0.00
894 54 0.04
895 45 0.03
896 394 0.27
897 73 0.05
898 30 0.02
899 249 0.17
900 81 0.06
901 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGCCACCATCGTGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGTTCCGGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
TAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACGAACTGAGGGTTGCGGCAGCAGGATCGGCAGCA
CGCTGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCTACCCTCTGGCCGGCTGAGAGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:23036 original size:26 final size:26
Alignment explanation
Indices: 23000--23052 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22990 GTTGACTTAC
*
23000 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23026 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23052 G
1 G
23053 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23641 original size:898 final size:881
Alignment explanation
Indices: 22119--24764 Score: 3187
Period size: 856 Copynumber: 3.0 Consensus size: 881
22109 GTTGACTTAG
* * * *
22119 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTATGGGTGCACACGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGA-GGTTACGGGTGCACATGATGGG
* * *
22184 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTGGCCCGAGCCACCGTCCTCAGAGCATCGCTAGAG
64 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTGGCCTGGGCCA-C--CATC--A-C--CG---GAG
* *
22249 AA-CTGACCAGCGGCAATGGGGTTCCAGCGATTGGGGGGGCCGGGGGGTGTGCGCACATAATGTG
118 AACCTGACCAGCGGCAATGGGGTTCCAGCGATT---TGGG-C-GGGGGTGTGCGCACATGATGTG
* ** *
22313 CGATAGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCGAACCTTGAGAACTCAC
178 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTCAC
* *
22378 -CCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
242 ACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
22442 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA-TTTTTTAGCTGAATTTTTTT
306 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTT-GCTGAATTTTTTT
* *
22506 GTGCATGCCAAAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
370 GTGCATGCCAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * *
22571 ATTTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATAAAAAATAGAAAACAAGTCGTCT
435 ATTTTAAAAAAATCTTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACAAGTCGTCT
22636 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
500 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
22701 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGACTTG
565 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
22766 TGCATCCCACCTCTCTGGTCGGCGTA-GTACTTGTCCGCCCGCCCGCCCGCCCGGTCATTTCGTC
630 CGCATCCCACCTCTCTGG-C--CG-ACGTA---GT--GCCCACCCACCAGCCCGGTCATTTCATC
* *
22830 TGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGATCAGACCAGACCAAGGATTGCGGTAG
686 AGTTGGCTTAGGCATACGAAGTTCATTCACAGTATAAGATCAGACCAGACCAAGGATTGCGGTAG
** * * * * * *
22895 CAGGATCGGTAGCATGATGAGGGGGACTCGGCCGATCCCTGGCATGCACATCCTGCCCCTTTAGC
751 CAACATCGGTACCATGATGAAGGGGACCCGACCGATCCCCGGCATACACATCCTGCCCCTTTAGC
* * * * * **
22960 CGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTACG-CATATGGAGTTCATTCCCAGTCT
816 CGACTGAGCGCCCACACGCTCGTTTCATGAGTTGACTTA-GAAATACAGAGTTCATTCCCAGTCT
23024 AA
880 AA
* *
23026 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAG-GTTACGGGTGCACATGATGGG
*
23091 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTGGCCTGGGGCACCATCACCGGAGAACCTGACC-G
64 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTGGCCTGGGCCACCATCACCGGAGAACCTGACCAG
* *
23155 ACGGCATTGGGGTTCCAGCGATTTACAGGGTCAGGGGGTGTGCACACATGATGTGCGATGGGTGC
129 -CGGCAATGGGGTTCCAGCGATTT---GGG-C-GGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
23220 TGGTACTTGGCCCTTATATTGGCCCCCTGTCCCACATCAAACCATGAGAACTCACACCTCCTTAA
188 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTCACACC-CCTTAA
*
23285 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTT
251 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
** *
23350 TTTTCAAATTTTCACAAAATCCTGTACACTTTGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAA
316 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAA
* * *
23415 GAAAAATACAAGGATCACGTCTACAAAGTTTGGAGCTAAAACTCCTTCTAAAAAAATTTTAAAAA
381 -AAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
*
23480 AATCTTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
445 AATCTTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
*
23545 CTTCACATGAAGGCTTAAGGGACCATTGT-TGAATTTACAAGCCATAAAAATGGCATTGGCACGG
510 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * *
23609 CAAAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCAC
575 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAC
* *
23674 CTCTCTGGCCGACGTAGTGCCCACCCACCAGCCCGTTCGTTTCATCAGTTGGCTTAGGCATACGA
640 CTCTCTGGCCGACGTAGTGCCCACCCACCAGCCCGGTCATTTCATCAGTTGGCTTAGGCATACGA
* * * * * * *
23739 AGTTCATTCATAGTCTAAGATCAGATCAGATCGAGGGTTGCGGTAGCAACATCGGTACCATGCTG
705 AGTTCATTCACAGTATAAGATCAGACCAGACCAAGGATTGCGGTAGCAACATCGGTACCATGATG
* * * * * *
23804 AAGGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTTTGGTCGGCTGAGCGTCCACACGC
770 AAGGGGACCCGACCGATCCCCGGCATACACATCCTGCCCCTTTAGCCGACTGAGCGCCCACACGC
23869 TCGTTTCATGAGTTGACTTAGAAATACAGAGTTCATTCCCAGTCTAA
835 TCGTTTCATGAGTTGACTTAGAAATACAGAGTTCATTCCCAGTCTAA
*
23916 G-AT-C---G---A-----A--CT-AGAT----C-GA--GA-GTTACAGGTGCACATGATGGGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGTTACGGGTGCACATGATGGGCT
* * * * *
23957 TGGGCATGTGCTGGTGCTGCATTTTTTTTCG-ATCGGGCCACCATCACTGGGGAACCTGACCAGC
66 CGGGCATGTGCTGGTGCTGCATTTTTTTTGGCCT-GGGCCACCATCACCGGAGAACCTGACCAGC
* * * * * * *
24021 AGCAATAGGGTTTCGGCGA-TT-GG-GGGGGTATGCGCACATGGTGTGCGATGGATGCTGGTACT
130 GGCAATGGGGTTCCAGCGATTTGGGCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
24083 TGGCCCTTATATTGGTCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCAT
195 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACA-CCCCTTAAAGAGCAT
*
24148 TTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
258 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
* * *
24213 ATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAAT
323 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCC-AAAAAAAT
* * * * *
24278 ACAACGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTACAAAAATCTCG
387 ACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTG
* * * ** *
24343 AACCGTAAAATGTTTCAAAAATCGTGAAAAGTAGAAAACTTGTCGTTTTGCCATGAAACTTCACA
452 AACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACA
*
24408 TGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
517 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* *
24473 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGCCTCTCTG
582 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTG
* * * * * * *
24538 GCTGACGTAGTG-CC-CGC-TC-GCCCGCTCGTTTCGTCGGTTCGG-TTAGGCATACGAAGTTCA
647 GCCGACGTAGTGCCCACCCACCAGCCCGGTCATTTCATCAGTT-GGCTTAGGCATACGAAGTTCA
* * * ** * * * * * * * * * *
24598 TTCCCAATCTAAGATTGGATCAGACCGAGGGTTACGGCAGCAAGATCGATAGCA-CACTGAGGGG
711 TTCACAGTATAAGATCAGACCAGACCAAGGATTGCGGTAGCAACATCGGTACCATGA-TGAAGGG
* * * * * * * * ** * * * *
24662 GACCTGATCGATCCCCGGCTTCCTCATCCTACCCCTCTGGCCGGTTGAGCCCCCGCACACTCATT
775 GACCCGACCGATCCCCGGCATACACATCCTGCCCCTTTAGCCGACTGAGCGCCCACACGCTCGTT
* ** * *
24727 TCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGT
840 TCATGAGTTGACTTAGAAATACAGAGTTCATTCCCAGT
24765 TTATCAATCC
Statistics
Matches: 1547, Mismatches: 172, Indels: 94
0.85 0.09 0.05
Matches are distributed among these distances:
853 169 0.11
854 3 0.00
855 3 0.00
856 349 0.23
857 115 0.07
859 2 0.00
863 3 0.00
864 88 0.06
865 1 0.00
866 2 0.00
868 2 0.00
869 1 0.00
874 4 0.00
875 2 0.00
877 1 0.00
882 1 0.00
885 1 0.00
888 1 0.00
889 3 0.00
890 187 0.12
892 2 0.00
894 1 0.00
895 5 0.00
896 6 0.00
897 110 0.07
898 225 0.15
899 157 0.10
901 1 0.00
902 1 0.00
904 3 0.00
906 2 0.00
907 96 0.06
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (881 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGTTACGGGTGCACATGATGGGCT
CGGGCATGTGCTGGTGCTGCATTTTTTTTGGCCTGGGCCACCATCACCGGAGAACCTGACCAGCG
GCAATGGGGTTCCAGCGATTTGGGCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGAGAACTCACACCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCCTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAATACAA
GGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAACC
GTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCG
ACGTAGTGCCCACCCACCAGCCCGGTCATTTCATCAGTTGGCTTAGGCATACGAAGTTCATTCAC
AGTATAAGATCAGACCAGACCAAGGATTGCGGTAGCAACATCGGTACCATGATGAAGGGGACCCG
ACCGATCCCCGGCATACACATCCTGCCCCTTTAGCCGACTGAGCGCCCACACGCTCGTTTCATGA
GTTGACTTAGAAATACAGAGTTCATTCCCAGTCTAA
Found at i:26437 original size:717 final size:716
Alignment explanation
Indices: 24967--26459 Score: 2169
Period size: 717 Copynumber: 2.1 Consensus size: 716
24957 AGCGCCCGCA
* * * *
24967 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * *
25032 AGGGTTCCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCATATTTTTTTTTCGTATGGGG
66 AGGGTTCCAGGTGCACATGCTGGGCTCGGGCATCTGCTGGTGTCATATTTTTTTTTCGTACGAGG
* **
25097 CATCATCCCCGGAGCATCGTCAAAGAACCTGACCGGCGGCATTGGGGGTTCCGACGATTGGAGGG
131 CACCATCCCCGGAGCATCGTCAAAGAACCAAACCGGCGGCATTGGGGGTTCCGACGATTGGAGGG
* * *
25162 TCGGGGGGTGTGCGCACATGATGCGTGATGTGTGCTGGTACTTCGCCCTTATATTGGCCCCCTAT
196 CCGGGGAGTGTGCGCACATGAT-CGTGATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTAT
** *
25227 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
260 CCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
* * **
25292 CAGTAGCCATTAAAGTGTTTAAAATTGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACT
325 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTACTCAAATGGTCACAAAATCCTATACACT
*
25357 TCGAGTTTTTAACTGAATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTT
390 TCAAGTTTTTAACTGAATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * * *
25422 TGGGGCTAAAACTCCTTATGCAAAAATTTAGAAAACTTCCGAACCTTAAAAAGTTTTGGAAATCA
455 TGGGGCCAAAAATCCTTATGAAAAAATTTAAAAAACTCCCGAACCGTAAAAAGTTTTGAAAATCA
* * *
25487 TCAAAAATAAAAAACGAGTCGTCTCGCCGTGAAAATTCACATGAAGGCTAAATGGACCATTGTAT
520 TCAAAAATAAAAAACGAATCGTCTCGCCATGAAAATTCACATGAAGGCTAAAGGGACCATTGTAT
25552 GAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCACCTAAACCCACCT
585 GAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCACCTAAACCCACCT
* * * *
25617 ACCACCCTACCGATCCACGGCTTGCATATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTG
650 ACCACCCTACCGATCCACGGCTTGCACATCCCACCTCTCTGGCCGACGTAGTGCCCGCCCGCCTG
25682 CC
715 CC
* * * * * *
25684 CGTTCATTTTGTCGGTTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* *
25749 AGGGTTAC-GAGTGCACATGCTGGGCTCGGGCATCTG-TGG-GTGC-TGTATTTTTTTTCGCT-C
66 AGGGTTCCAG-GTGCACATGCTGGGCTCGGGCATCTGCTGGTGT-CATAT-TTTTTTTTCG-TAC
* **
25809 GAGGCACCATCGCCGGAGCATCGTCGTAGAACCAAACCGGCGGCATT-GGGGTTCCGACGATTTG
127 GAGGCACCATCCCCGGAGCATCGTCAAAGAACCAAACCGGCGGCATTGGGGGTTCCGACGA-TTG
* ** *
25873 GGGGGCCGGGGAGTGTTTGCACATGAT-GTGCAGTGGGTGCTGGTACTTGGCCCTTATATTGGCC
191 GAGGGCCGGGGAGTGTGCGCACATGATCGTG-A-TGGGTGCTGGTACTTCGCCCTTATATTGGCC
25937 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTT
254 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTT
* * *
26002 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTACTCAAATGGTCACAAAATCCTG
319 TGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTACTCAAATGGTCACAAAATCCTA
* *
26067 TCCACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTA
384 TACACTTCAAGTTTTTAACTGAATTTTTTTGTGCATGCCCAA-AAAAATACAAGGATCACGTCTA
** *
26131 GTAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAAC-CCCGAACCGTAAAAAGTTT
448 CCAAGTTTGGGGCCAAAAATCCTTATGAAAAAA-TTT-AAAAAACTCCCGAACCGTAAAAAGTTT
* * * * * * *
26195 TGAAAATCATGAAAAATAGAAAACGAATCGTTTTGCCATGAAACTTCACATGAATGCTTAAGGGA
511 TGAAAATCATCAAAAATAAAAAACGAATCGTCTCGCCATGAAAATTCACATGAAGGCTAAAGGGA
**
26260 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
576 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCACCTA
* * *
26325 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGACGTATTGCCC
641 AACCCACCTACCACCCTACCGATCCACGGCTTGCACATCCCACCTCTCTGGCCGACGTAGTGCCC
26390 GCCCG-CTCGCC
706 GCCCGCCT-GCC
*
26401 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
26460 AAACTGGGGG
Statistics
Matches: 688, Mismatches: 77, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
714 3 0.00
715 22 0.03
716 314 0.46
717 343 0.50
718 6 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (716 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTCCAGGTGCACATGCTGGGCTCGGGCATCTGCTGGTGTCATATTTTTTTTTCGTACGAGG
CACCATCCCCGGAGCATCGTCAAAGAACCAAACCGGCGGCATTGGGGGTTCCGACGATTGGAGGG
CCGGGGAGTGTGCGCACATGATCGTGATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTACTCAAATGGTCACAAAATCCTATACACTT
CAAGTTTTTAACTGAATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAAATCCTTATGAAAAAATTTAAAAAACTCCCGAACCGTAAAAAGTTTTGAAAATCAT
CAAAAATAAAAAACGAATCGTCTCGCCATGAAAATTCACATGAAGGCTAAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCACCTAAACCCACCTA
CCACCCTACCGATCCACGGCTTGCACATCCCACCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGC
C
Found at i:34032 original size:26 final size:26
Alignment explanation
Indices: 34002--34054 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33992 GTTGACTTAG
*
34002 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
34028 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34054 G
1 G
34055 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35815 original size:26 final size:26
Alignment explanation
Indices: 35779--35831 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35769 GTTGAATTAG
*
35779 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35805 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35831 G
1 G
35832 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36215 original size:886 final size:881
Alignment explanation
Indices: 33138--36400 Score: 4774
Period size: 889 Copynumber: 3.7 Consensus size: 881
33128 GTTGACTTAG
*
33138 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAAGGGTTGCGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG-AGGGTTGCGGGTGCACATGCTGG
** * *
33202 GCTCGGGCATGTGCT-GTGCCACATTTTTTTCCTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
65 TTTCAGGCATGTGCTGGTGCCACATTTTTTTCC-CCGGG--CCA----C----CATCGTCGGAGA
*
33266 ACCTGACCGACGGCATTGGGGTTCC-GACGATTGGGGGGGGCCGGGGGTGTGCGCACATGATGTG
119 ACCTGACCGACGGCATTGGGGTTCCAG-CGATTGGGGGGGGCTGGGGGTGTGCGCACATGATGTG
33330 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
33395 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATG
248 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
33460 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTG
313 GGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAA-TTTTTTTG
33525 TGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
377 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
*
33589 ATTTTAAAAAAAAT-CTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
442 ATTTT--AAAAAATCCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
33653 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
505 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
33718 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
570 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
33783 TGTGCATCCTGCCTCTCTAGCCGACGTAGTG--C-CCG-C-CCGCTCGTTTTGTCGGTTGG-TTA
635 TGCGCATCC-GCTTCTCTGGCCG-CGTAGTGCCCGCCGCCACCGCTCGTTTCGTCGGTTGGCTTA
* * *
33842 GGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACTGAGGGTTGCAGCAGTAGGATTGAT
698 GGCATACGGAGTTCATTCCCAATCTAAGATCG-ACCAGACCGAGGGTTGCAGCAGTAGGATCGAC
* ** * * * * *
33907 AGCATGCAGTGGGGGACCCAACCGATCCCCGGCTTCCGCATCTTGCCCCTCTGGCTGGCTCAGTG
762 AGCATGCAGAGGGGGACCCAGTCGATCCTCGACTT-CGCATCCTGCCCCTCTGGCCGGCTGAGTG
*
33972 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
826 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * *
34028 GCATACGGAGTTCTTTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGGTGCACATGCTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGT
* * *
34093 TTCAGGCATGTGCTGGGGCCATATTTTTTTCCCCCGGGCCACCATCGTCAGAGAACCTGACCGAC
66 TTCAGGCATGTGCTGGTGCCACATTTTTTT-CCCCGGGCCACCATCGTCGGAGAACCTGACCGAC
* * *
34158 GGCATTGGGGTTCCGGCGATTGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
130 GGCATTGGGGTTCCAGCGATTGGGGGGGGC-TGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
34223 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAG
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAG
34288 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
34353 TTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-ACA
324 TTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
34417 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAT
389 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
*
34481 CCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
454 CCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
34546 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
519 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
34611 GAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
584 G-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCG-C
* * *
34676 TT-TCTGGCCGGTGTAGTGCCCGCCCATCCACCCGCTCGTTTCGTCGGTTGTCTTAGGCATACGG
646 TTCTCTGGCC-GCGTAGTGCCCG-CC-GCCA-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * * * * * * *
34740 AGTTCATTCCCAATCTAAGATTGGACCGGATCAAAGGTTACGGCAGCAAGATCGGCAGCACGCTG
707 AGTTCATTCCCAATCTAAGA-TCGACCAGACCGAGGGTTGCAGCAGTAGGATCGACAGCATGCAG
* * *
34805 AGGGGGACCC-GATCAATCCTC-AGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGTGCCTGCAC
771 AGGGGGACCCAG-TCGATCCTCGA-CTT-CGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCAC
*
34868 GCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
833 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * *
34917 GCATAAGGAGTTCATTCCCAGTCAAATATCGGACCGGATCGAGGGTTGTGGGTGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATG-CTGG
* * * * * *
34982 CTT-AGGCATGTGCTTGTGCCGCATTTGTTTTCGCCCGGGGCACCATCGCCGGAGAACCTGACTG
65 TTTCAGGCATGTGCTGGTGCCACATTT-TTTTC-CCCGGGCCACCATCGTCGGAGAACCTGACCG
* * * * * * *
35046 GCAGCATTGGGGTTCCAACGATT-GGGGGGGCTGGGGGTGTGCACACATGATGTTCGATGCGTGT
128 ACGGCATTGGGGTTCCAGCGATTGGGGGGGGCTGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
35110 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCAAGAACTGACACCCCTTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC-TTAA
* * * *
35175 AGAGCATTAGAGATTTTACAAGTTTGCTACCAGTAACCATTAAAGTGTCTGAAATGGGGACACTT
257 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
35240 TTTTCAAATGATCTCAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCA
322 TTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
35305 CAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAGCTCCTTCTGAAAAAATTTTAAAAA
387 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* *** *
35370 ATCCT-GAACCATAAAAAGTTTTGGAAATCATGAAAAATAGAAAACGAATCGTCTTGCCATGAAA
452 ATCCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
35434 CTTCTCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGG
517 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* *
35499 CAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCACATCCGCT
582 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGCT
* *
35564 TCTCTGGCCAGCGTAGTGCCCGCCTGCCCACCAGTTCGTTTCATCGGTTGGCTTAGGCATACGGA
647 TCTCTGGCC-GCGTAGTGCCCGCC-G-CCACC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * **
35629 GTTTATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCAATAGTAGGATCGACAGCATGCAGA
708 GTTCATTCCCAATCTAAGATC-GACCAGACCGAGGGTTGCAGCAGTAGGATCGACAGCATGCAGA
35694 GGGGGACCCAGTCGATCCTCGACTTCTGCATCCTGCCCCTCTGGCCGGCTGAGCT-CCCGCACGC
772 GGGGGACCCAGTCGATCCTCGACTTC-GCATCCTGCCCCTCTGGCCGGCTGAG-TGCCCGCACGC
*
35758 TCGTTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCTAGTCTAA
835 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * *
35805 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGGTGCACATGCTAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGT
* *
35870 TTCGGGCATGTGCTGGTGCCGCATTTTTTTCACCCGGGCCACCATCGTCGGAGAACCTGACCGAC
66 TTCAGGCATGTGCTGGTGCCACATTTTTTTC-CCCGGGCCACCATCGTCGGAGAACCTGACCGAC
* * * * *
35935 GGTATTGGCGTTTCAGCGATT-GCGGGGG-TGGGGGTG-ACTGCACATGATGTGCGATGGGTGCT
130 GGCATTGGGGTTCCAGCGATTGGGGGGGGCTGGGGGTGTGC-GCACATGATGTGCGATGGGTGCT
** *
35997 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTGACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAA
*
36062 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTT
258 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
36127 TTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
323 TTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * *
36192 AAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACGCCCTCTAAAAAAAGTTTAAAAAA
388 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* *
36257 T-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGACTTGCCATGAAAC
453 TCCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
36321 TTCACATTAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
518 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
36386 AGAAATATGAAGATG
583 AGAAATATGAAGATG
36401 GCTCGCTCAT
Statistics
Matches: 2138, Mismatches: 194, Indels: 86
0.88 0.08 0.04
Matches are distributed among these distances:
878 7 0.00
879 128 0.06
880 74 0.03
881 123 0.06
882 207 0.10
884 2 0.00
885 4 0.00
886 393 0.18
887 73 0.03
888 373 0.17
889 421 0.20
890 299 0.14
891 32 0.01
892 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGT
TTCAGGCATGTGCTGGTGCCACATTTTTTTCCCCGGGCCACCATCGTCGGAGAACCTGACCGACG
GCATTGGGGTTCCAGCGATTGGGGGGGGCTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGCTTCTC
TGGCCGCGTAGTGCCCGCCGCCACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAATCTAAGATCGACCAGACCGAGGGTTGCAGCAGTAGGATCGACAGCATGCAGAGGGGGACCC
AGTCGATCCTCGACTTCGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:38568 original size:881 final size:869
Alignment explanation
Indices: 36491--39102 Score: 3352
Period size: 881 Copynumber: 3.0 Consensus size: 869
36481 ACAAGATCGA
36491 CAGCACGCTGAGTGGGACCCGATCGATCCCCGGCTTATGCATCCTGCCCCTCTGGCCGACTGAGC
1 CAGCACGCTGAG-GGGACCCGATCGAT-CCCGGCTTATGCATCCTGCCCCTCTGGCCGACTGAGC
* * ** *
36556 ACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCACATGG
64 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAATGG
36621 AGTTCTTTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGAGTGCACATGCTGGGCTCGAGCA
129 AGTTCTTTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGAGTGCACATGCTGGGCTCG-GCA
* * * * *
36686 TGTGCTGGTGTCGCATTTTTTTTTTGCCCAGGCCACCATCACCGGCGAGAACCTGACTGACGGCG
193 TGTGCTGGTGCCGCA-TTTTTTTTCG-CC-GGCCACCATCGCC-G-GAGAACCTGACCGACGGCA
* **
36751 TTGGGCTCGCCGACGATTGTGGGGCGGGGGGTGGTTGCGCACATGATGTGCGATGGGTGCTGGTA
253 TTGGGGT-TTCGACGATTGTGGGGCGGGGGGT-G-TGCGCACATGATGTGCGATGGGTGCTGGTA
*
36816 CTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACACCTCGAGAACTGACACACCCCTTAAAG
315 CTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AA-ACCTCGAGAACT--CACACCCCTTAAAG
* *
36881 AGCATTTGAGATATTACAGTGTGTT--TGCCAGTAGCCATTAAAGTTTCTGAAAT-GGGACACTT
376 AGCATTTGAGATTTTACAG-GT-TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
36943 TTTTCAAATGATCACAAAATCCTGTACACTTCGAGTTTTTTAGCTGAATTTTTTTTGTGCATGCC
439 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAG-TTTTTAGCTGAA-TTTTTTTGTGCATGCC
*
37008 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAATTTAAAAA
502 CA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAATTT--AAA
* * ** *
37073 AAAATCTTGAACCGTAAAAAGTTTCAAAATCATGAAAAATAAAAAACGAGTCGTCCTGGGACGAA
564 AAAATC-CGAACCGTAAAAAGTTTCAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
* *
37138 ACTTCATATGAAGGCTTAAGGGACCATTGT-TGAATTTACAAGCCATAAAAATGGCATTGGCACG
628 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
37202 ACAAAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATTCCG
693 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGCA-TCCG
* * *
37267 TCTCTCTGG-CAGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATA
756 CCTCTCTGGTC-GGCGTAGT-------CGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAAA
** * * * * *
37331 TGGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCAG
813 CAGAG-TCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTTGCGACAGCAGGATCAG
* ** * * * *
37389 CAGCAAGCTGAGGGGGTCCGGTCGATCCCGGACTTGTGCATCCTGCCCCTTTGCCCGACTGAGCG
1 CAGCACGCTGAGGGGACCCGATCGATCCCGG-CTTATGCATCCTGCCCCTCTGGCCGACTGAGCG
* * * **
37454 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCTTATGGA
65 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAATGGA
* * *
37519 GTTCTTTCCCAGTCTAAGATTGGATCAGACCAAGGGTTACGAGTGCACATGCTGGGCTCGGGCAT
130 GTTCTTTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGAGTGCACATGCTGGGCTC-GGCAT
* * * * *
37584 GTGCTGGTGCCGCATTTTTTTTCGCTCGGGGCACCATCGCCGAAGAACTTGACCGGCGGCATTTG
194 GTGCTGGTGCCGCATTTTTTTTCGC-C-GGCCACCATCGCCGGAGAACCTGACCGACGGCATTGG
*
37649 GG-TTCCAGCGATTTGTGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
257 GGTTTCGA-CGA-TTGTGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
37713 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGGGCATTT
319 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTT
* * * *
37778 GAGATTTTAGAGGTTTGCTCCCAGTAGCCATTAAAGTGTATGAAATGGGGACACCTTTTTCAAAT
383 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
37843 GGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAAAAAATTCA
448 GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAAAAAATACA
* * * * *
37908 AAGATCACGTCTACCAAGTTTTGGCCCAAAACACCTTCTGAAAAAATTTAAAAAAATCCAGAACT
513 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAATTTAAAAAAATCC-GAACC
* * *
37973 GTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACTAGTCATCTTGCCATGAAACATCACATGAA
576 GTAAAAAGTTTC-AAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
38038 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGA
640 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGA
*
38103 AGATGCGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCG
705 AGATGTGCCTAAACCCACCTACCAC-CTATCGATCCACGGCTTGCGCAT-CCGCCTCTCTGGTCG
* *
38168 ACGTAGT-G-CCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCAAACAGAGTCCATTCCCAGTCTA
768 GCGTAGTCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAAACAGAGT-CATTCCCAGTCTA
* * * **
38231 AGATCAGACTGAACTGAAGGTTGC-AGTAGCAGGATTGG
832 AGATCAGACCGAACCGAAGGTTGCGA-CAGCAGGATCAG
* * * * * *
38269 CAGCACGCTGAGGGGCACCCGACCGATCCTCGGGTTACGGATCCTACCCCTCTGGTC-AGCTGAG
1 CAGCACGCTGAGGGG-ACCCGATCGATCC-CGGCTTATGCATCCTGCCCCTCTGGCCGA-CTGAG
*
38333 CGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAATG
63 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAATG
* * * * * *
38398 AAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCG-GCTGCACATGCTGGGCTCAGG
128 GAGTTCTTTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGAG-TGCACATGCTGGGCTC-GG
* * * *
38462 TATGTGCTGGTGCCGTATTTTTTTTCGACCGTACCACCATCGTCGGAGAACCTGACCGACGGCAT
191 CATGTGCTGGTGCCGCATTTTTTTTCG-CCG-GCCACCATCGCCGGAGAACCTGACCGACGGCAT
* *
38527 TGGGGTTTCGACGATTG-GGATGGTCGGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTAC
254 TGGGGTTTCGACGATTGTGG--GG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
38591 TTGGCCCTTATTTTTGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCA
316 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCA
* *
38656 CTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCA
380 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
38721 AATGGTCACAAAATCCTGTACA-TTCGAG--TTTAGCTGAA-TTTTTTGTGCATG-CCAACAAAA
445 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAA-AAAA
*
38781 TACAAGGATCACGTCTACC-AGTTTGGGGCC-AAACTTCCTTCTGAAAAATTTTAAAAAATCTCG
509 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCTGAAAAATTTAAAAAAATC-CG
* *
38844 AACCGTAAAAAAGTTTTAAAATCGTGAAAAATAGAAAAA-GAGTCGTCTTGCCATGAAACTTCAC
572 AACCGT-AAAAAGTTTCAAAATCATGAAAAATA-AAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
38908 ATGAAGGCTT-AGGGAGCATTGTATGAATTTAC-AGCCATAAAAATGGCATTGGCAATGGCAGAA
635 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ATGGCAGAA
* * *
38971 ATATGAAGATGTGCCT-AACCCACCTACCACCAATCGATCCACGGCTTGCTCA-CCACCTCTCTG
699 ATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCACGGCTTGCGCATCCGCCTCTCTG
* * *
39034 GTCGGCGTTAGTTGCCGCCCCGCCCGATCGTTTCGTTGGTTGGCTTA-G--AACAGAGTTATTCC
764 GTCGGCG-TAG-T--CGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAAACAGAGTCATTCC
39096 CAGTCTA
825 CAGTCTA
39103 GAGTGACCAG
Statistics
Matches: 1515, Mismatches: 158, Indels: 108
0.85 0.09 0.06
Matches are distributed among these distances:
870 16 0.01
871 3 0.00
872 33 0.02
873 43 0.03
874 45 0.03
875 75 0.05
876 61 0.04
877 34 0.02
878 10 0.01
879 4 0.00
880 100 0.07
881 379 0.25
882 10 0.01
887 25 0.02
888 110 0.07
889 138 0.09
890 62 0.04
891 53 0.03
892 4 0.00
893 65 0.04
894 27 0.02
895 10 0.01
896 26 0.02
897 170 0.11
898 12 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (869 bp):
CAGCACGCTGAGGGGACCCGATCGATCCCGGCTTATGCATCCTGCCCCTCTGGCCGACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAATGGAG
TTCTTTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGAGTGCACATGCTGGGCTCGGCATGT
GCTGGTGCCGCATTTTTTTTCGCCGGCCACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTT
TCGACGATTGTGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAAAAAATACAAGGATCAC
GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAATTTAAAAAAATCCGAACCGTAAAAAGTT
TCAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCTATCGATCCACGGCTTGCGCATCCGCCTCTCTGGTCGGCGTAGTCGCCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCAAACAGAGTCATTCCCAGTCTAAGATCAGACCGAAC
CGAAGGTTGCGACAGCAGGATCAG
Found at i:40067 original size:26 final size:26
Alignment explanation
Indices: 40028--40087 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
40018 GTTGACTTAG
*
40028 GCATACGGACTTCATTCCCAGTTTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
40054 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
40080 G-AT-CGGAC
1 GCATACGGAC
40088 CGGACCCAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 25 0.81
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:40753 original size:904 final size:892
Alignment explanation
Indices: 39254--41778 Score: 3367
Period size: 904 Copynumber: 2.8 Consensus size: 892
39244 TGACATGCTC
* * *
39254 GGGCACCATCGTCGAACATCACCGGAGAACCTGACCTGCGGCATTTGGGGTTTCCGACGATTGGG
1 GGGCACCATCG-CGAGCAT--CCGGAGAACCTGACCGGTGGCA-TTGGGG-TTCCGACGATTGGG
39319 GGGG-C--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
61 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
39381 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAGAGCATTTGAGATTTTACAGGTTT
126 CCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
39445 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAACTTTTTTCAAATGGTCACAAAATCCTG
190 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC-ACTTTTTTCAAATGGTCACAAAATCCTG
*
39510 TACACTTCGAGTTTTTAGCTGAATTGTTTTTGTGGCAAGCCAACAAAAATACAAGGATCACGTCT
254 TACACTTCAAGTTTTTAGCTGAATTGTTTTTGT-GCAAGCCAACAAAAATACAAGGATCACGTCT
*
39575 ACCAAGTTT-GGGCCAAAACTTCCTTTGAAAAAATTTTTAAAAAATCCTGAACCGTTAAAAAGTT
318 ACCAAGTTTGGGGCCAAAAC-TCCTTTG-AAAAATTTTAAAAAAATCC-GAACCG-TAAAAAG-T
*
39639 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGCCTTAAGG
378 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
*
39704 GACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC
443 GACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTGCC
* * * * *
39769 -AAAACCACCTACCACCCTATCGATCCACGACTTGCACATCCTGCCTCTCTTGTCGACGTAGTGC
508 TAAACCCACCTACCACCCTATCGATCCACGACTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGC
* * ** * *
39833 TCGCCTGCCC-CCCGCTCGTTTCATCAGTTGGCAAAGGTATATGGAGTTCATTCCCAGTCTAAGA
573 -C-CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
39897 T-TGTACCAGACAGTGGGTTACAACAGCAGGATCAGTAGCAC-ATAGAGGGGGACCCAGCCGATC
636 TCAG-ACCAGACAGAGGGTTACAACAGCAGGATCAGCAGCACGAT-GAGGGGGACCCAGCCGATC
* * * *
39960 CCCGACTTGCGCATCCTACCCCTCTGGCCGGCTGGGTGCCTGCACGTTCATTTCGTGAGTTGACT
699 CCCGACTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGAGTTGACT
* * *
40025 TAGGCATACGGA-CTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
764 TAGGCATACAGAGC-TCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCGGACC
* * *
40089 GGACCCAGGGTTGCGGGTGCACATGCTAGGCTTGGGCA-TGTGCTGGTGC-CCTATTCTTTTCGC
828 GGACCCAGGGTTGCGGGTGCACATGCTAGGCTCGGG-ATTGTGCTGGCGCGAC-ATT-TTTTCGC
40152 CCA
890 CCA
* *
40155 GGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGTGGCATTGGGGTTCCAACGATTGGGG
1 GGGCACCATCG-C-GAGCATC--CGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATTGGGG
*
40220 GGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCT
62 GGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
40285 CCTATCCCTCATCAAACCTCGAGAACTCACACCTTCTTAAAGAGCATTTGAGATTTTACAGGTTT
126 CCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
40350 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAGATGGTCACAAAATCCTGT
190 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
*
40415 ACACTTCAAGTTTTTAGCTGAATTGTTTTTGTGCAAGCCAACAAAAATACAAGGATCACCTCTAC
255 ACACTTCAAGTTTTTAGCTGAATTGTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTAC
40480 CAAGTTTGGGGCCAAAACTCCTTCTGAACAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCA
320 CAAGTTTGGGGCCAAAACTCCTT-TGAA-AAATTTTAAAAAAATC-CGAACCGTAAAAAGTTTCA
* *
40545 AAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACA
382 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* * * *
40610 ATTGTATGAATTTACAAGCCAGAAAAAAGGCAATGGCACGGTAGAAATATGAAGATGTGCCTAAA
447 ATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAA
* * * *
40675 CCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGCATCTCTGGCCGGCGTAGTGCCCAC
512 CCCACCTACCACCCTATCGATCCACGACTTGCACATCCCGCCTCTCTGGCCGGCGTAGTG-CC-C
* * *
40740 CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAG
575 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * ***** * ** * * * *
40805 ACCGGATAGAGGGTTGTGGTAGCATGATTGGCAGCACGCTGAGGGGGAGCCGGTCGATCCCCGAC
640 ACCAGACAGAGGGTTACAACAGCAGGATCAGCAGCACGATGAGGGGGACCCAGCCGATCCCCGAC
* * *
40870 TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
705 TTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGAGTTGACTTAGGCA
* * *
40935 TACAGAGCTCATTCCCAGTCTAAGCATACGGAGTTCACTCCTAGTCTAAGATTGGACTGGACCCA
770 TACAGAGCTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCGGACCGGACCCA
* ******
41000 GGGTTGCGGGTGCACATGCTGGGCTCGGGATTGTGCTGGCGCGACATTTTTTTTTTTG
835 GGGTTGCGGGTGCACATGCTAGGCTCGGGATTGTGCTGGCGCGACATTTTTTCGCCCA
* *
41058 GGGCACCAT--C--G---CCGGAGAACCTGACCGGTGGCATGGGGGTT-CGACGATTGGGGGAGC
1 GGGCACCATCGCGAGCATCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGGC
* * * *
41115 TGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTC
66 -CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
41180 TCCCTCATCAAACCTCTAGAACTCACACACCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTG
130 TCCCTCATCAAACCTCGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
41245 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACAA
194 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* * * * * *
41310 TTCGAA-TTTTTAGCTAAATT-TTTCTGTGCATGCCCACAAAACTACAAGGATCACGTCTACGAA
259 TTC-AAGTTTTTAGCTGAATTGTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * * *
41373 GTTTGGGACCAAAAATTCTTTGGAAAAAATTAAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
323 GTTTGGGGCCAAAACTCCTTT-GAAAAATTTTAAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAA
*
41438 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTG
386 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* * * *
41503 TATGAATTTACAAGCCATAAAAATGTCATTGGCACAGCAAAAATATGAAGATGTGCCTAAACCCA
451 TATGAATTTACAAGCCACAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
41568 CCAACCACACAATCGATCCACGACTTGCACATCCCACCTCTCTGGCTGGCGTAGTG--CCCGCCC
516 CCTACCACCCTATCGATCCACGACTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCCCCGCCC
* *
41631 GCCCGCT-GCTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
581 GCCCGCTCG-TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* **** * * * * * *
41695 ACGGAGGGTTGTGGCAGCAAGATC-GACAGCATGCTGAGGGGGACTC-GACCGATCCTCGACTTA
645 ACAGAGGGTTACAACAGCAGGATCAG-CAGCACGATGAGGGGGACCCAG-CCGATCCCCGACTTG
* *
41758 TGCATCCTGCCCCTCTGGCCG
708 CGCATCCTACCCCTCTGGCCG
41779 AGGGGGTGTG
Statistics
Matches: 1450, Mismatches: 145, Indels: 74
0.87 0.09 0.04
Matches are distributed among these distances:
884 2 0.00
885 134 0.09
889 203 0.14
890 58 0.04
891 204 0.14
892 36 0.02
894 1 0.00
897 1 0.00
900 19 0.01
901 19 0.01
902 146 0.10
903 134 0.09
904 427 0.29
905 66 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GGGCACCATCGCGAGCATCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGGC
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
CAAGTTTTTAGCTGAATTGTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTTGAAAAATTTTAAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCACAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGACTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCG
CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAG
GGTTACAACAGCAGGATCAGCAGCACGATGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCT
ACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACAGAGCTCA
TTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCGGACCGGACCCAGGGTTGCGGGT
GCACATGCTAGGCTCGGGATTGTGCTGGCGCGACATTTTTTCGCCCA
Found at i:40980 original size:26 final size:26
Alignment explanation
Indices: 40932--40984 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
40922 GTTGACTTAG
*
40932 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCACTCCCAGTCTAA
* * *
40958 GCATACGGAGTTCACTCCTAGTCTAA
1 GCATACAGAGCTCACTCCCAGTCTAA
40984 G
1 G
40985 ATTGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCACTCCCAGTCTAA
Found at i:44036 original size:877 final size:870
Alignment explanation
Indices: 41774--44985 Score: 4590
Period size: 875 Copynumber: 3.7 Consensus size: 870
41764 CTGCCCCTCT
41774 GGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
1 GGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
41839 TCTCCCTCATCAAACCTCTAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGC
66 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
41904 TGCCAATAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
131 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATAC
* * * *
41969 ACTTCGAGGTTTTAGCTGAATGTTTTTATGGATGCCACCAAAAATACAAGGATCACGTCTACCAA
196 ACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
42034 GTTTGGGGTCAAAAATCCTTCTAAAAAAAATTCTAAAAAAT-TCAAACCGTAAAAAGTTTCAAAA
261 GTTTGGGGCCAAAAATCCTTCT--GAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * *
42098 ATCATGAAAAATAAAAAATGAGTCGTTTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
324 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
*
42163 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACGC
389 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
* *
42228 ACCTACCACCCTATCAATCCACGGCTTGCGCA-CCTCGCCTCTCTGGCCGGCATAGTGCCCGCCC
454 ACCTACCACCCTATCGATCCACGGCTTGCGCATCC-CACCTCTCTGGCCGGCATAGTGCCCGCCC
* * * ** *
42292 GCCTGCCCACTTGTTTCGTCGATTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGAC
518 GCCCGCCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAT
* * * * *
42357 CAGACCGAGGGTTGCAGCAGCAGGATCAGTAGAACACTGAGGGGAACCCGGCCGATCCCTGGCTT
583 CGGA-TGAGGGTTGCGGCAGCAGGATCAGTAGCACACTGAGGGG--GCCGGCCGATCCCTGGCTT
*
42422 GTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
645 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
42487 CGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTTGCACATGCTGGGCTCAG
710 CGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG-TGCACATGCTGGGCTCAG
* * * * * *
42552 GAATGTGCTGGTGCCGTA-TTTTTTTTCGCCTGGGGCACCATCGCCAGAGCATCGTCGGAGAACT
774 GCATGTGCTGGTGCCATATTTTTTTTTC-CCCGGGGCACCATCACCGGAGCATCGTCGGAGAACC
* *
42616 TGATCGGCGGCATTGGGGTTCCGGCGA-TGGGGG
838 TGACCGGCGGCATTGGGGTT-CGACGATTGGGGG
* **
42649 GGCCGGGGGGGCTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
1 GGCCGAGGGGG-TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
42714 CTGTCACTCATCAAACCTCTAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
65 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
42778 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCCTATA
130 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATA
* * **
42843 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCCAA-AAAAATACAAGGATCATATCTACC
195 CACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACC
* * * *
42907 AAGCTTGGGGCCAAAAATCCTTCTGAGAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCGAA
259 AAGTTTGGGGCCAAAAATCCTTCTGA-AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
* * *
42972 AATCGTGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCGCATGAAGGCTTAAGGGACCAT
323 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* * * *
43037 AGTATGAATTTAAAAGCCATAAAAATGTCATTGGCATGGCAGAAATATGAAGATGTACCTAAACC
388 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* * * *
43102 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCGCTCTGGTCGGCGTAGTGCCCGCCC
453 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCATAGTGCCCGCCC
*
43167 GCCCGCCCACTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAT
518 GCCCGCCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAT
** * *
43232 CGGATGGAGGGTTGCGGCAGTGGGATCGGTAGCACGA-TGAGGGGGCTCGGCTGATCCCTGGCTT
583 CGGAT-GAGGGTTGCGGCAGCAGGATCAGTAGCAC-ACTGAGGGGGC-CGGCCGATCCCTGGCTT
* * * * *
43296 GCGTATCTTGCCCCTCTGGCCGGCTGAGTGCCCGCACGC-CTGTTTCATGGGTTGACTTAGCCAT
645 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCAT
*
43360 ACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGGTGCGA-ATGCTGGGCTC
709 ACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGTGC-ACATGCTGGGCTC
* *
43424 AGGCATGTGCTGGTGCTATATTTTTTTTTCACCCGGGGCACCATCACCGGAGCATCGTCAGAGAA
772 AGGCATGTGCTGGTGCCATATTTTTTTTTC-CCCGGGGCACCATCACCGGAGCATCGTCGGAGAA
*
43489 CCTGACCGGCGCCATTGGGGCTTCGACGATTGGGGG
836 CCTGACCGGCGGCATTGGGG-TTCGACGATTGGGGG
* *
43525 GGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCC
1 GGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
43590 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
66 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
43655 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTATTTTCAAATGGTCACAAAATCCTGTAC
131 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATAC
*
43720 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGACAAAAATACAAGGATCACGTCTACCA
196 ACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCA
*
43785 AGTTTGGGGCCAAAACTCCTTCTGAAAAATTTTAAAAAAATCTCGAACCGTAAAAAAG-TTCAAA
260 AGTTTGGGGCCAAAAATCCTTCTGAAAAATTTT-AAAAAATCTCGAACCGT-AAAAAGTTTC-AA
* *
43849 AAAT-GTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
322 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
43913 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
387 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
* *
43978 CCACCTACCACCCTATCGATCCA-GG-TTGCCGCAATCCCACCTCTCTGGCCGACGTAGTGCCCG
452 CCACCTACCACCCTATCGATCCACGGCTTG-CGC-ATCCCACCTCTCTGGCCGGCATAGTGCCCG
* * * *
44041 CCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATTG
515 CCCGCCCGCCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
* * * * * * *
44106 GATCGGACTGACGGTTACGACAGCAGGATCAGCAGCACATTAAGGGGGACCTGGCCGATCACTGG
580 GATCGGA-TGAGGGTTGCGGCAGCAGGATCAGTAGCACACTGAGGGGG-CC-GGCCGATCCCTGG
* * * * *
44171 TTTGCGCATCCTGCCACTCTGGCTGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGC
642 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
*
44236 ATACGAAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCT
707 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGTGCACATGCTGGGCT
* * * *
44301 CTGGCATGCGAC-GGTGCCATATTTTTTTTT-GCCGAGGGCACCATCTCCGGAGCATCGTCGGAG
771 CAGGCATGTG-CTGGTGCCATATTTTTTTTTCCCCG-GGGCACCATCACCGGAGCATCGTCGGAG
* * *
44364 AACCTGACCGACGGCATTTGGGTTTC-AGTGATT-GGGG
834 AACCTGACCGGCGGCA-TTGGGGTTCGA-CGATTGGGGG
* *
44401 GGCC-AGGGGGTGTGCGCACATGATGTGTGATGGTTGCTAGTACTTGGCCCTTATATTGGCCCCC
1 GGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
44465 TATCCCTCATCAAACCTCGAAAACTTAGACCCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGC
66 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *** * * *
44530 TGTCAGTAGCCATTAAAGTGTTTGAAATCAAGACATTTTTTTCAAATAGTCACAAAATCCTATGC
131 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATAC
* *
44595 ACTTCGAGTTTTTAGCTGAATGTTTTTGTGAATGCCAAGAAAAATACAAGGATCACGTCTACCAA
196 ACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * *
44660 GTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAA
261 GTTTGGGGCCAAAAATCCTTCTG-AAAAA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
44725 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
324 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
44790 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
389 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
* *
44855 ACCTACCACCCTATCGATCCACGGCTTCCACATCCCACCTCTC-GGCCGGCATAGTGCCCGCCCA
454 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCATAGTGCCCG----
* * * * *
44919 CCCGCCCGCACGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAG
515 CCCG--C-C-CGCCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
44984 AT
576 AT
44986 CGAACCGGAC
Statistics
Matches: 2110, Mismatches: 181, Indels: 85
0.89 0.08 0.04
Matches are distributed among these distances:
873 3 0.00
874 234 0.11
875 1000 0.47
876 267 0.13
877 378 0.18
878 171 0.08
879 2 0.00
880 1 0.00
881 1 0.00
882 53 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
GGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATAC
ACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAAATCCTTCTGAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCATAGTGCCCGCCCGCC
CGCCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGG
ATGAGGGTTGCGGCAGCAGGATCAGTAGCACACTGAGGGGGCCGGCCGATCCCTGGCTTGCGCAT
CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGT
TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTGCACATGCTGGGCTCAGGCATGTG
CTGGTGCCATATTTTTTTTTCCCCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGC
GGCATTGGGGTTCGACGATTGGGGG
Found at i:46693 original size:874 final size:874
Alignment explanation
Indices: 45007--48858 Score: 5042
Period size: 874 Copynumber: 4.4 Consensus size: 874
44997 GAGGGTTACG
* *
45007 GCATTGGGGTTCCGAC-AGTTGGAGGGGCCGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTG
1 GCATTGGGGTTCCGACGA-TTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
** * *
45071 GTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCAAGGGAACTCACACCCCCTTAAAA
65 GTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
45136 AGCATATGACATTTTACAGGTTTCCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACAC-TTT
129 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * *
45200 TTCAAATAGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTTAATTTTTTTCTGCTTGCCAACA
194 TTCAAATGGTCACAAAATCCTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * *
45265 AAAATACAAGGAACATGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAATTTTTTAAAAAA
259 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAA-ATTTAAAAAAA
* *
45330 ATCTCGAATCGTAAAAAGTTTCAAAAAT-GCTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
323 ATCTCGAACCGTAAAAAGTTTCAAAAATCG-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
45394 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
387 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * *
45459 CAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGTGCATCCCGC
452 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAC
* * *
45524 CTCTCTGGCCGAAGTAGTGCCCGCCTGCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGA
517 CTCTCTGGCCGACGTAGTGCCCGCCTCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * * *
45589 GTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACGATTGACAGCACGATGT
582 GTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTACGGTAGCAGGATCGACAGCACGCTGA
* * * * *
45654 GGGGGACCCGACCGATCCCCAGCTTACGCATCCTGCCCCTCTAGCCGGTTGAGCGCCCTCACGCT
647 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * *
45719 CGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCCAGAG
712 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* *
45784 TTGTGGGTACACATGCTGGGCT-GGAGCATT-TGCTGGTGCCGCATTTTTTTTGCCCAGGGCACC
777 TTGCGGGTGCACATGCTGGGCTCGG-GCATTGTGCTGGTGCCGCATTTTTTTTGCCCAGGGCACC
* *
45847 ATCGTCGGAGCATCGCCAGAGAACCTGACCGACC
841 ATCGCCGGAGCATCACCAGAGAACCTGACCGACC
*
45881 GCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
1 GCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
45946 TACTTGGCCCTTATATTGGCCCCTGGTCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAGA
66 TACTTGGCCCTTATATTGGCCCCT-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
46011 GCATTTGAGATTTTATAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTT
130 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
46076 TCAAATGGTCACAAAATCCTGTACACTTCAACTTTTTAGTTGAATTTTTTTCTGCATGCCAACAA
195 TCAAATGGTCACAAAATCCTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** * * *
46141 AAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAAATCCCTCTGCAAAAATTTAAAAAAAAT
260 AAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTAAAAAAAAT
* * * *
46206 CTCAAACCGTAAAAAGTTTCAAAAATCGTTAAAAATAAAAAACGAGTCGTTTTGCCATGAAACTT
325 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
46271 CACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCAGGGCAG
390 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAA
46336 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTC
455 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTC
* * * * * * * *
46401 TCTGGCTGGCGTAGTGCCCGCCCACCTGCTCGCTCGTTTTGTCGTTTGGCTTAGGCATATGGAGG
520 TCTGGCCGACGTAGTGCCCG-CCTCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * *
46466 TCATTCCCAGTTTAAGACCAGACTGAACTGAGCGTTATGGTAGCAAGATCGACAGCAACCCTGAG
584 TCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTACGGTAGCAGGATCGACAGC-ACGCTGAG
* * * ** *
46531 GGGGGCCC-AGCCGATCCCCGGCTTGTGCATCCTGCCCCTTTGGCCGATTGAGCGCCCGCATGCT
648 GGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
*
46595 CGTTTC-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGG
712 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* *
46659 TTACGGGTGCACATGCT-GGCTTCGGGCA-T-TGCTGGTGCCGCATTTTTTTGGCCCAGGGCACC
777 TTGCGGGTGCACATGCTGGGC-TCGGGCATTGTGCTGGTGCCGCATTTTTTTTGCCCAGGGCACC
** * *
46721 ATTACCGGAGCATCACCGGAGAACCTGACCGACG
841 ATCGCCGGAGCATCACCAGAGAACCTGACCGACC
*
46755 GTATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
1 GCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
46820 TACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGG
66 TACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
46885 GCATTTGAGATTTTACAGGTTAGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTT
130 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
46950 TCAAATGGTCACAAAATCTTGAACACTTCGAATTTTTAGCTGAATGTTTTTGTGCATGCCAA-AA
195 TCAAATGGTCACAAAATCCTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * **
47014 AAATACAAAGATCATGTCTATCAAGTTTGGGGCAAAAGCTCCTTCTGAAAAAATAAAAAAAAAAT
260 AAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTAAAAAAAAT
* *
47079 CTCGAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
325 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
**
47144 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTGTAAAAATGGCATTGGCATGGCAA
390 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAA
47209 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTC
455 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTC
* * * *
47274 TCTGGCCGACGTAGTGCTCG-C-CC-GCCCGCTCGTTTCGTTGTTTGGCTTAGGCATATGGAGTT
520 TCTGGCCGACGTAGTGCCCGCCTCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * ** ** *
47336 CATTCCCAGTGTAAGATCAGAC-CAGACTGGGGGTTGCGGCAGCAGGATCGGTAGCACTTTGAGA
585 CATTCCCAGTCTAAGATCAGACTGA-ACTGAGGGTTACGGTAGCAGGATCGACAGCACGCTGAGG
* * * * * * *
47400 GGGACTCGATCGATCCTCGAG-TTGCGTATCCAGCCCCTCTGGCTGGCTGAGCACCCGCACGCTC
649 GGGACCCGACCGATCCCCG-GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* ** *
47464 GTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
713 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * * *
47529 TGTGGGTGCACATGCTGGGCTCAGG-ATTGTGCTGGTGCCGTATTTTTTTTCGCTCGGGGCACCA
778 TGCGGGTGCACATGCTGGGCTCGGGCATTGTGCTGGTGCCGCATTTTTTTT-GCCCAGGGCACCA
* * * * *
47593 TCGTCGGAGCATCATCGGAGAACTTGACAGA-C
842 TCGCCGGAGCATCACCAGAGAACCTGACCGACC
* * * * *
47625 GATATTAGGGTTTCGACGAGTGGAGGGGGCCGGAGGGGGGTGTGCGCACATGATGTACGATGGGT
1 G-CATTGGGGTTCCGACGATTGG-GGGGGCC---GGGGGGTGTGCGCACATGATGTGCGATGGGT
** * *
47690 GCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCACTT
61 GCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
47755 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
125 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
47820 TTTTTTCAAATGGTCACAAAATCCTGTACACATT-GAGTTTTTAGCTGAATTTTTTTGTGCATTC
190 TTTTTTCAAATGGTCACAAAATCCTGTACAC-TTCGACTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * * *
47884 CAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCGTTGTAAAAAAATTTTAA
254 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTAAA
* *
47949 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGACAAATAGAAAACGAGTCGTCTTGCCATG
319 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
48014 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
384 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
48079 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGCATCC
449 TGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
48144 CGCCTCTCTGGCCGACGTAGTGCCTGCCTGCTCGCCAGCTCGTTTTGTCGGTTGGCTTAGGCATA
514 CACCTCTCTGGCCGACGTAGTGCCCGCCTCCT-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * *
48209 CGGAGTTCATTCCCAGTCTAAGATTGGAGTGGA-TCGAGGGTTACAGTAGTAGGATCGACAGCAC
578 CGGAGTTCATTCCCAGTCTAAGATCAGACTGAACT-GAGGGTTACGGTAGCAGGATCGACAGCAC
* * * * *
48273 GCTGAGGGGGACCC-AGTCGATCCCCGACTTGCACATCCTGCCCCTCTGACCGGCTGAGCGCCCA
642 GCTGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
*
48337 CATGCTCGTTTCGTGGGTTTG-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
706 CACGCTCGTTTCGTGGG-TTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG--
** *
48401 CATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGCACTCTGGCA-TGT
759 -A-T-C--G-----GA-C----CGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATTGT
* * * * * * **
48465 GCTGGTTCCGCATTTTTTTCG-CCAGAGGCACCATCCCCGGAGCATCGCCAAAGAACCTAATTG-
809 GCTGGTGCCGCATTTTTTTTGCCCAG-GGCACCATCGCCGGAGCATCACCAGAGAACCTGACCGA
*
48528 GC
873 CC
* * *
48530 GACATTGGGGTTTCGACGATT-AGGGGGCCGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
1 G-CATTGGGGTTCCGACGATTGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
48594 TGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCAAGAACTGACACCCCCTTAA
63 TGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
48659 AGGGCATTTGAGATTTTACAGGTTAGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
127 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
48724 TTCTCAAATGGTCACAAAATCCTGTCCACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAA
192 TTTTCAAATGGTCACAAAATCCTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
48789 CAAAAATACAAGGATCACGTCTACCATGTTTGGGG-AAAAAGCTCCTTTTGAAAAAATTT-AAAA
257 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAA-CTCCTTCTGAAAAAATTTAAAAA
48852 AAATCTC
321 AAATCTC
48859 AGTTGGCTTA
Statistics
Matches: 2604, Mismatches: 308, Indels: 105
0.86 0.10 0.03
Matches are distributed among these distances:
868 60 0.02
869 153 0.06
870 25 0.01
871 55 0.02
872 7 0.00
873 262 0.10
874 676 0.26
875 472 0.18
876 330 0.13
877 1 0.00
878 1 0.00
879 2 0.00
880 162 0.06
881 3 0.00
882 1 0.00
885 1 0.00
886 2 0.00
889 2 0.00
892 1 0.00
893 1 0.00
894 1 0.00
896 1 0.00
901 19 0.01
902 257 0.10
903 7 0.00
904 2 0.00
905 47 0.02
906 52 0.02
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (874 bp):
GCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCCTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTAAAAAAAATC
TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCT
CTGGCCGACGTAGTGCCCGCCTCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTACGGTAGCAGGATCGACAGCACGCTGAGGGG
GACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
GGGTGCACATGCTGGGCTCGGGCATTGTGCTGGTGCCGCATTTTTTTTGCCCAGGGCACCATCGC
CGGAGCATCACCAGAGAACCTGACCGACC
Found at i:48399 original size:26 final size:26
Alignment explanation
Indices: 48363--48415 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
48353 GTTTGCTTAG
48363 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
48389 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
48415 G
1 G
48416 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:51384 original size:4 final size:4
Alignment explanation
Indices: 51377--51406 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
51367 CGTAGTGCCT
*
51377 GCCC GCCC GCCC GCCC GCCC GCCC ACCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
51407 TCGTTTTGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.73, G:0.23, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:52497 original size:26 final size:26
Alignment explanation
Indices: 52461--52511 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
52451 GTTGACTTAG
*
52461 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
52487 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
52512 GGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:53759 original size:874 final size:876
Alignment explanation
Indices: 50877--56092 Score: 6683
Period size: 872 Copynumber: 5.9 Consensus size: 876
50867 GGTTACGGGT
* *
50877 GCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATACCC-CATCAAAC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATCAAAC
* *
50941 CTCGAGAACTCACACCCCCTTAAATAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
65 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * * * * *
51006 AAGTGCCAGAAACGGGGACACTTTTTTCAAATTGTCACAAAATCCTATACAGTTTGAGTTTTTAG
130 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
* * * * * *
51071 CTGAAATTTTTTTGTGCAAGCCACCAAAAATACAAGGATCTTGTCCACCAAGTTTTGAGCCAAAA
195 CTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
* * ** *
51136 CTCCTTCTGAAAAAATTTAAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAA
259 CTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAA
* * * * * *
51201 AAAATGAGTCATCTTGCCATGAAGCTTCACATGAAGGCTTAAGGGACCATTGTATGAATTAATAG
324 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
51266 GCCATAAAAATGGCATCGGCATGGCAGAAATACGAAGATGT-CCTTAAACCCACCTACCACCCTA
389 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC-TAAACCCACCTACCACCCTA
* *
51330 TCGATCCACGGCTTGCGCATCTCACCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCCCGC
453 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTA--G--T------------GCCCGC
* * * * *
51395 CCGCCCACCCGCTCGTTTTGTCTGTTGGTTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGG
502 CCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * * *
51460 ATCGGACCAAGAGTTACGGTAGTAGGATCGGCAGCATGCTGAGGGGGACCCGATCGATCCTCGGC
567 ACCGAACCAAGGGTTGCGGCAGCAGGATCGTCAGCACGCTGAGGGGGACCCGATCGATCCCCGGC
* * * * *
51525 TTGCGTATTCTGGCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCA
632 TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * *
51590 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACAGAGGGTTGCGGGTGCACATGCTGGGCTC
697 TACGGAGTTCATTCCCAGTATAAGATCAGACCAGACTGAGGGTTACTGGTGCACATGCTGGGCTC
* * * * *
51655 GGGCATGTGCTGGTG-C-TGTATTTTTTTTTGCCCGGGGCACCATAATCGGAGCATCGTCGAAGA
762 GAGCATGTGCTGGTGCCATGCA-TTTTTTTCGCCCGGGGCACCATCACCGGAGCATCGTCG-AGA
* * *
51718 ACCTGATCGGCGGCATTGGGGTTTCGACG-TTGAGGGGGCCAGGGGGTATGC
825 ACCTGACCGGCGGCATTGGGGTTTCGACGATTGGGGGGGCCAGGGGGTGTGC
* * *
51769 GCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTCTCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
51834 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
51899 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
* * *
51964 TGAATTTTTTTGTGCATGCCAACAAATATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAAT
196 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT
* * * *
52029 CCTTCCGAAAAAATTTT-AAAAAATCCCGAA-TCGTAAAATGTTTCAAAAATCGTGAAAAATAAA
261 CCTTCTGAAAAAATTTTAAAAAAATCCTGAACT-GTAAAAAGTTTCAAAAATCATGAAAAATAAA
*
52092 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGCGACCATTGTATGAATTTACAAG
325 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
52157 CCATAAAAATGGCATTGGCACGGCAGAAATATGACGATGTGCCTAAACCCACCTATCACCCTATC
390 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * **
52222 GATCCACGGTTTGCGCATCCCGCCTCTCTGGCCGACGTAGTACCCGCCTACCCACCCGCTCGTTT
455 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTT
* * * * *
52287 TGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAAACCGAATCAAGGGTTGTG
520 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCG
* * * * * * *
52352 GCAGTAGGATTGGT-AGCACTCTGAGGGGGACCCGGTCGATCCTCGGCTTGCACATCTTGCCCCT
585 GCAGCAGGA-TCGTCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCT
* * * **
52416 CTCGCTGTCTGAGCGCTGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTA
649 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-C--
* * *
52481 GTCTAAGCATATGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTT-GTGGGTGCACA
711 --C----C------AG-T-A-T---A----A-GATCAGACCAGACTGAGGGTTACT-GGTGCACA
** * * * * **
52545 TGCTACGCTCGGGCATGTGCTGGTGCCATACTTTTTTTTCACCCGGGGCACCATCGTCGGAGCAT
752 TGCTGGGCTCGAGCATGTGCTGGTGCCATGCATTTTTTTCGCCCGGGGCACCATCACCGGAGCAT
* * * *
52610 CGCCAGAGAACCTGACCGACGACATTGGGGTTTCCACGATT-GGGGGGCCAGGGGGTGTGC
817 CGTC-GAGAACCTGACCGGCGGCATTGGGGTTTCGACGATTGGGGGGGCCAGGGGGTGTGC
*
52670 GCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
52735 TTGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* ** * *
52800 AGTGTCTAAAATGGGGATGCTTTTTTCAAATGGTCACAAAATCCTGTAAACTTTGAGTTTTTAGC
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
* *
52865 TGAATGTTTTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
196 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT
*
52929 CCTTC-AAAAAAATTTTAAAAAAAT-CTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAA
261 CCTTCTGAAAAAATTTTAAAAAAATCCT-GAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAA
* * *
52992 AAATGAGTCGTCTTGCCATGAACCTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAG
325 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
53057 CCATAAAAATGGCATTGGCACGGTAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATC
390 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * *
53122 GATCCACGGCTTGCGCATCCTGCCTCTCTGGCCGGCGCAGTGCCCACCCGCCTACCCGCTCATTT
455 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTT
* * * *
53187 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATTAGACCGGACCGAGGGTTGCG
520 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCG
* * **
53252 GCAGCAAGATCGTCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGTACATCCTGCCCCTC
585 GCAGCAGGATCGTCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTC
* * * * *
53317 TGGCCGGCTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTGCCGG
650 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * *
53382 TATAAGATCGGACCGGACTGAGGGTTACTGGTGCACATGCTGGGCTCGAGCATGTGCTAGTGCC-
715 TATAAGATCAGACCAGACTGAGGGTTACTGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCA
* * * * * *
53446 T-CATTTTTTTCGCTCGGGCCACCATCGCCAGAGCATCGCCAGAAAACCTGACCGGCGGCATTGG
780 TGCATTTTTTTCGCCCGGGGCACCATCACCGGAGCATCGTC-GAGAACCTGACCGGCGGCATTGG
* * * *
53510 CGTTTCGGCGATTGGGGGGGCCGGGGGGGTGTGT
844 GGTTTCGACGATTGGGGGGGCC-AGGGGGTGTGC
* * *
53544 GCACATGATGTGCAATGGGTGCTTGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
53609 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTACTAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
** *
53674 AGTGTCTGAAATGGGGACACTTTTTTCAAACCGTCACAAAATCCTGTACACTTCGAGTTTTTTGC
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
* * * * *
53739 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGATTGGGGCAAAAAAT
196 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT
* *
53804 CCTTCTGAAAAAATTTTAAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
261 CCTTCTGAAAAAATTTTAAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAAA
53869 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
326 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
53934 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCG
391 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
*
53999 ATCCACGGCTTGTGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTC
456 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTC
* * * *
54064 GTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGAATCAAGGGTTGCGA
521 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGG
* ** ** *
54129 CAGCAGGATTAGT-AGCACATTGAGGGGGACCCGATCGATCCCAAGCTTGCGCATTCTGCCCCTC
586 CAGCAGGA-TCGTCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTC
* * * * **
54193 TGGCCGGCAGAACGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCGGG
650 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * ** * *
54258 TCTAAGATCGGACCAGA-T-AGAGGTTTGTGGTGCACATGCTAGGCTCGAGCATGTGCTGGAG-C
715 TATAAGATCAGACCAGACTGAG-GGTTACTGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
* *
54320 -TGCATTTTTTTCGCCCGGGGCACCATCACCGGAGGATCATCGAGAACCTGACCGGCGGCATTGG
779 ATGCATTTTTTTCGCCCGGGGCACCATCACCGGAGCATCGTCGAGAACCTGACCGGCGGCATTGG
*
54384 GGTTCCGACGATTGGGGGGGCCAGGGGGTGTGC
844 GGTTTCGACGATTGGGGGGGCCAGGGGGTGTGC
54417 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
54482 TCGAGAACTCAC-CCCCTTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
54546 AGTGTTTGAAATCGGGACATTTTTTTCAAATGGTCACAAAATCCTGTA-ACCTTCAAGTTTTTAG
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA-CTTCGAGTTTTTAG
* * *
54610 CTGAACTTTTTTGTGCAAGCCCACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
195 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
** *
54675 TCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGA
260 TCCTTCTGAAAAAATTTTAAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAA
* *
54740 AAACGAGTCGTCTTGCCATGAAACTTCTCATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAG
325 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
54805 CCATAAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATT
390 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * **
54870 GATCCATGGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGTTTCCGCCCG----CCCGCTCGTTT
455 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTT
* * * * * * *
54931 CGTCAGTAGGCTTAGGCATACGAAGTTCATTCCCAGTTTAAGATCAGACCAAACCAAAGGTTGCA
520 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCG
** ** * * * *
54996 GCAGCAGGATCAACAGCACGCTGAATGGGAACCGATTGATCCCCGGCTTGCGTATCTTGCCCCTC
585 GCAGCAGGATCGTCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTC
* ** * * * * *
55061 TGGTCGATTGAGCACTCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
650 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * *
55126 TCTAAGATCAGACCGGACCGATGGTTACTGGTGCACATACTGGGCTCGGGCATGTGCTGGTGCCA
715 TATAAGATCAGACCAGACTGAGGGTTACTGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCA
* * * *
55191 T--ATTTGTTTTCACTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGATCGGCGGCATTG
780 TGCATTT-TTTTCGCCCGGGGCACCATCACCGGAGCATCGTC-GAGAACCTGACCGGCGGCATTG
* *
55254 GGGTTCCGACGATTGGGGGGGCTAGGGGGGTGTGC
843 GGGTTTCGACGATTGGGGGGGCCA-GGGGGTGTGC
* * * * *
55289 ACTCATGATGTGTGATGGATGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
55354 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTCTGCTGTCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
55419 AGTGTCT-AGAATGGAGACACTTTTTTCAAATGGTCAGAAAATCATATACACTTCGAGTTTTTAG
131 AGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
* *
55483 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCGAGTTTGGGCCCAAAAC
195 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
* * * *
55548 TCCATCTGAAAAAATTTTAAAAAAAT-CTCGAACTGTAAAAAGTTTCAAAGATCGTG-AAAATAG
260 TCCTTCTGAAAAAATTTTAAAAAAATCCT-GAACTGTAAAAAGTTTCAAAAATCATGAAAAATAA
* *
55611 AAAATGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
324 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
55676 GCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTAT
389 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
** ** * * ** *
55741 CGATCCGTGGCTTATGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCTGCCCTCTCGTT
454 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTT
* * * **
55806 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAAATCAGATCGGAA-TGAGGGTT-
519 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACCAAGGGTTG
* * * * * * **
55869 CTGACAGTAAGATCGGCAGCACGTTGTGGGGGACCCGATCGATCTTCGGCTTGCGCATCCTGCCC
583 C-GGCAGCAGGATCGTCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCC
* * * * * *
55934 CTCTGGCTGGTTGAGCACCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCC
647 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
55999 CAG-ACTAAGATCAGATCAGACTGAGGGTTA-TGGCTGCACATGCTGGGCT-TAGGCATGTGCTG
712 CAGTA-TAAGATCAGACCAGACTGAGGGTTACTGG-TGCACATGCTGGGCTCGA-GCATGTGCTG
* * *
56061 GTGCC--GTATTGTTTTTCGTCTGGGGCACCATC
774 GTGCCATGCATT-TTTTTCGCCCGGGGCACCATC
56093 GTCGGA
Statistics
Matches: 3791, Mismatches: 460, Indels: 162
0.86 0.10 0.04
Matches are distributed among these distances:
867 1 0.00
868 182 0.05
869 38 0.01
870 33 0.01
871 46 0.01
872 709 0.19
873 299 0.08
874 483 0.13
875 119 0.03
876 645 0.17
877 9 0.00
879 2 0.00
882 1 0.00
883 2 0.00
884 1 0.00
885 1 0.00
886 1 0.00
888 1 0.00
889 2 0.00
890 190 0.05
891 75 0.02
892 179 0.05
895 2 0.00
899 15 0.00
900 467 0.12
901 284 0.07
902 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (876 bp):
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT
CCTTCTGAAAAAATTTTAAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAAA
AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTC
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGG
CAGCAGGATCGTCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCT
GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
ATAAGATCAGACCAGACTGAGGGTTACTGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCAT
GCATTTTTTTCGCCCGGGGCACCATCACCGGAGCATCGTCGAGAACCTGACCGGCGGCATTGGGG
TTTCGACGATTGGGGGGGCCAGGGGGTGTGC
Done.