Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 100 of 378
Found at i:27448803 original size:50 final size:50
Alignment explanation
Indices: 27448625--27448991 Score: 243
Period size: 48 Copynumber: 7.6 Consensus size: 50
27448615 GGGTAAGATA
* * ****
27448625 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACA-C-ATTAAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGTG
* * *
27448673 TCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAG-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCG-GTG
* ** *
27448723 CCGAT-ACATGTCATAGACATGGTCTTACACTGGCTTTCATCTATCGGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGTG
* * * **
27448772 CCGATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATC--TC-AAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGTG
* * * * * * * *
27448817 -CGATGCCATGTTCCAAACATGGAT-TTACACTAGTTTTTATATCTCGAG-G
1 CCGATGCCATGTCCCAGACATGG-TCTTACACTGGCTCTCATCTATCG-GTG
* * * * * *
27448866 CCGATGCCATGTTCCAGACATGGTATTACACTAGCTCT--TGT-TTGGATA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGG-TG
* *
27448914 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-AAT--GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGT-G
27448962 CCGATG-CATGTCCCAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
27448992 AGCACACATA
Statistics
Matches: 255, Mismatches: 44, Indels: 42
0.75 0.13 0.12
Matches are distributed among these distances:
44 28 0.11
45 3 0.01
46 15 0.06
47 16 0.06
48 86 0.34
49 44 0.17
50 63 0.25
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (50 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGTG
Found at i:27451470 original size:40 final size:40
Alignment explanation
Indices: 27451406--27451600 Score: 216
Period size: 40 Copynumber: 4.8 Consensus size: 40
27451396 AACACAAAGT
* *
27451406 CTGCGGGACTTTAAGCCCGGAT--ATAGTACCAGCAATAAGC
1 CTGCGGGA-TTTAA-CCCGGATACATATTACCAGCAAGAAGC
** * * * *
27451446 CTGCAAGACTTAACCCGGATATATATATATTACTAGCACGAAGC
1 CTGCGGGATTTAACCCGG----ATACATATTACCAGCAAGAAGC
*
27451490 CTGCGGGATTTAACCCGGATACATATTACCAGCACGAAGC
1 CTGCGGGATTTAACCCGGATACATATTACCAGCAAGAAGC
*
27451530 CTGTGGGATTTAACCCGGATACATATTACCAGCACA-AAGC
1 CTGCGGGATTTAACCCGGATACATATTACCAGCA-AGAAGC
27451570 CTGCGGGATTTAACCCGGATACATATTACCA
1 CTGCGGGATTTAACCCGGATACATATTACCA
27451601 TATATCGACT
Statistics
Matches: 133, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 5 0.04
39 4 0.03
40 93 0.70
42 2 0.02
44 29 0.22
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (40 bp):
CTGCGGGATTTAACCCGGATACATATTACCAGCAAGAAGC
Found at i:27451530 original size:84 final size:80
Alignment explanation
Indices: 27451398--27451600 Score: 239
Period size: 80 Copynumber: 2.5 Consensus size: 80
27451388 CAGTCGCTAA
* * *
27451398 CACAAAGTCTGCGGGACTTTAAGCCCGGAT--ATAGTACCAGCAATAAGCCTGCAAGACTTAACC
1 CACAAAGCCTGCGGGA-TTTAA-CCCGGATACATATTACCAGCAAGAAGCCTGCAAGACTTAACC
* *
27451461 CGGATATATATATATTACTAG
64 CGG----ATACATATTACCAG
* * *** *
27451482 CACGAAGCCTGCGGGATTTAACCCGGATACATATTACCAGCACGAAGCCTGTGGGATTTAACCCG
1 CACAAAGCCTGCGGGATTTAACCCGGATACATATTACCAGCAAGAAGCCTGCAAGACTTAACCCG
27451547 GATACATATTACCAG
66 GATACATATTACCAG
27451562 CACAAAGCCTGCGGGATTTAACCCGGATACATATTACCA
1 CACAAAGCCTGCGGGATTTAACCCGGATACATATTACCA
27451601 TATATCGACT
Statistics
Matches: 105, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
80 50 0.48
82 7 0.07
83 5 0.05
84 43 0.41
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (80 bp):
CACAAAGCCTGCGGGATTTAACCCGGATACATATTACCAGCAAGAAGCCTGCAAGACTTAACCCG
GATACATATTACCAG
Found at i:27453590 original size:40 final size:40
Alignment explanation
Indices: 27453535--27453742 Score: 276
Period size: 40 Copynumber: 5.2 Consensus size: 40
27453525 TGAATGATAC
* * *
27453535 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
27453575 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
27453615 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
27453655 TCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
27453695 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
27453735 CC-GGCTAA
1 CCGGGCTAA
27453743 ATTCCGAAGA
Statistics
Matches: 148, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 5 0.03
40 141 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:27453668 original size:80 final size:80
Alignment explanation
Indices: 27453531--27453742 Score: 311
Period size: 80 Copynumber: 2.7 Consensus size: 80
27453521 CATTTGAATG
* * * *
27453531 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
27453596 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* *
27453611 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATTCGGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC
27453675 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* ** *
27453691 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
27453743 ATTCCGAAGA
Statistics
Matches: 119, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
79 8 0.07
80 109 0.92
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:27459555 original size:30 final size:31
Alignment explanation
Indices: 27459519--27459581 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
27459509 CCTTTTCATA
27459519 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
27459549 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
27459580 TT
1 TT
27459582 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:27459662 original size:41 final size:42
Alignment explanation
Indices: 27459605--27459695 Score: 123
Period size: 41 Copynumber: 2.2 Consensus size: 42
27459595 TGGCCCATAG
**
27459605 GCCCATTTCAATATCACAT-ATAATGTCAATGAA-GAATGCAA
1 GCCCATTTCAATATCACATGA-AATACCAATGAATGAATGCAA
*
27459646 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGAATGCAA
*
27459688 ACCCATTT
1 GCCCATTT
27459696 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
41 29 0.66
42 15 0.34
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGAATGCAA
Found at i:27459866 original size:23 final size:23
Alignment explanation
Indices: 27459836--27459998 Score: 251
Period size: 23 Copynumber: 7.1 Consensus size: 23
27459826 CCTTGCCTCT
*
27459836 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
27459859 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
27459882 TTT--TGATCTGGGGCATAAGCCC
1 TTTAAT-AACTGGGGCATAAGCCC
27459904 TTT-ATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
27459926 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
27459950 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
27459973 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
27459996 TTT
1 TTT
27459999 TGCACTTCCT
Statistics
Matches: 130, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
21 1 0.01
22 34 0.26
23 76 0.58
24 19 0.15
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:27460071 original size:9 final size:9
Alignment explanation
Indices: 27460057--27460113 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
27460047 ATCTCATGTG
27460057 CATATCATA
1 CATATCATA
*
27460066 CATATCATGTG
1 CATATCA--TA
27460077 CATATCATA
1 CATATCATA
* *
27460086 CATGTCATGTG
1 CATATCA--TA
27460097 CATATCATA
1 CATATCATA
27460106 CATATCAT
1 CATATCAT
27460114 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:27460073 original size:20 final size:20
Alignment explanation
Indices: 27460045--27460115 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
27460035 GCATTTATGA
*
27460045 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
27460065 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
27460085 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
27460105 ACATATCATGT
1 ACATATCATGT
27460116 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:27460080 original size:11 final size:11
Alignment explanation
Indices: 27460050--27460104 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
27460040 TATGAACATC
27460050 TCATGTGCATA
1 TCATGTGCATA
*
27460061 TCA--TACATA
1 TCATGTGCATA
27460070 TCATGTGCATA
1 TCATGTGCATA
* *
27460081 TCA--TACATG
1 TCATGTGCATA
27460090 TCATGTGCATA
1 TCATGTGCATA
27460101 TCAT
1 TCAT
27460105 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:27460180 original size:25 final size:25
Alignment explanation
Indices: 27460152--27460199 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
27460142 ATATATAAAC
* *
27460152 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
27460177 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
27460200 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:27461416 original size:27 final size:27
Alignment explanation
Indices: 27461354--27461418 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
27461344 GGGCATATTC
27461354 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
27461381 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
27461408 GTCTTTTTACC
1 GTCATTTTACC
27461419 TAATAGGGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:27461643 original size:27 final size:27
Alignment explanation
Indices: 27461477--27461726 Score: 114
Period size: 27 Copynumber: 9.3 Consensus size: 27
27461467 TCTACAAACT
* * *
27461477 AAGGGTATTTCAGTAATTTCGTAAACC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*
27461504 AATGGTATTTCTA-TAATTTTAG-AAAGTC
1 AAGGGTATTT-TAGTAATTTT-GTAAA-TC
* *
27461532 AAGGGTATTTCT-GTAACTTTGTAAATT
1 AAGGGTATTT-TAGTAATTTTGTAAATC
* * ** *
27461559 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTGTAAATC
* * *** *
27461586 GA-GGT-TTTTCGATAATTTCACAAACC
1 AAGGGTATTTTAG-TAATTTTGTAAATC
27461612 AAGGGTATTTTAGTAATTTTGTAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
* **** *
27461639 GAGGGTAAAACAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
**** * *
27461666 AAGGGTAAAACAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*** * *
27461693 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
27461720 AAGGGTA
1 AAGGGTA
27461727 AAACAGTAAT
Statistics
Matches: 182, Mismatches: 32, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
25 5 0.03
26 16 0.09
27 133 0.73
28 28 0.15
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.36
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTGTAAATC
Found at i:27461709 original size:81 final size:81
Alignment explanation
Indices: 27461625--27462022 Score: 552
Period size: 81 Copynumber: 4.9 Consensus size: 81
27461615 GGTATTTTAG
* * * * *
27461625 TAATTTTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 TAATTATGTAAATCAG-GGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTGTA
* * *
27461689 AATCAAGGGTAAAA-TA
65 AGTCGAGGGTAAAACGA
* * * * *
27461705 GTAATTCTATAAATCAAGGGTAAAACAGTAATTCA-GTAAATCGAGGGTAAAACGGTAATTCTGT
1 -TAATTATGTAAATCAGGGGTAAAACGGTAATT-ATGTAAATCAAGGGTAAAACGGTAATTCTGT
27461769 AAGTCGAGGGTAAAACGA
64 AAGTCGAGGGTAAAACGA
* * *
27461787 TAATTATGTAAATTAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAA
1 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTGTAA
27461852 GTCGAGGGTAAAACGA
66 GTCGAGGGTAAAACGA
* *
27461868 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAA
1 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTGTAA
27461933 GTCGAGGGTAAAACGA
66 GTCGAGGGTAAAACGA
*
27461949 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAAT-TAGGGTAAAACGGTAATTCTGTAA
1 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTGTAA
* *
27462013 ATCGGGGGTA
66 GTCGAGGGTA
27462023 CTTTAGTAAT
Statistics
Matches: 290, Mismatches: 23, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
80 31 0.11
81 258 0.89
82 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.28
Consensus pattern (81 bp):
TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTGTAA
GTCGAGGGTAAAACGA
Found at i:27461727 original size:27 final size:27
Alignment explanation
Indices: 27461624--27462015 Score: 462
Period size: 27 Copynumber: 14.6 Consensus size: 27
27461614 GGGTATTTTA
* * *
27461624 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
*
27461651 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
* **
27461678 GTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
27461705 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
27461732 GTAATTCAGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
27461759 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * * *
27461786 ATAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
27461813 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
27461840 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
27461867 ATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
27461894 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
27461921 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
27461948 ATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
27461975 GTAATTATGTAAAT-TAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
27462001 GTAATTCTGTAAATC
1 GTAATTCTGTAAATC
27462016 GGGGGTACTT
Statistics
Matches: 320, Mismatches: 44, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.07
27 297 0.93
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCAAGGGTAAAACG
Found at i:27462049 original size:27 final size:27
Alignment explanation
Indices: 27462019--27462117 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
27462009 GTAAATCGGG
*
27462019 GGTACTTT-AGTAATTTTACAAGTCGAA
1 GGTA-TTTCAGTAATTTTACAAATCGAA
* * *
27462046 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCAGTAATTTTACAAATCGAA
* *
27462073 GGTATTTCAGTATTTTTACAAA-CTAA
1 GGTATTTCAGTAATTTTACAAATCGAA
*
27462099 GGGTATTTCGGTAATTTTA
1 -GGTATTTCAGTAATTTTA
27462118 GTAAACTAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.08
27 54 0.92
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAATCGAA
Found at i:27462070 original size:54 final size:54
Alignment explanation
Indices: 27462011--27462117 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
27462001 GTAATTCTGT
* *
27462011 AAATCGGGGGTACTTT-AGTAATTTTACAAGTCGAA-GGTATTTCGGTAAATTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCGGTAAATTTAC
* * *
27462065 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAAATTTA
27462118 GTAAACTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 6 0.13
54 40 0.87
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAAATTTAC
Found at i:27462131 original size:27 final size:27
Alignment explanation
Indices: 27462027--27462132 Score: 74
Period size: 27 Copynumber: 3.9 Consensus size: 27
27462017 GGGGTACTTT
* *
27462027 AGTAATTTTACAAGTCGAAG-GTATTTC
1 AGTAATTTTACAA-ACTAAGAGTATTTC
* * * *
27462054 GGTAAATTTACAAA-TCGAGGGTATTTC
1 AGTAATTTTACAAACT-AAGAGTATTTC
* *
27462081 AGTATTTTTACAAACTAAGGGTATTTC
1 AGTAATTTTACAAACTAAGAGTATTTC
* *
27462108 GGTAATTTTAGTAAACTAA-AGTATT
1 AGTAATTTTA-CAAACTAAGAGTATT
27462133 CTAAACAGGG
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
26 2 0.03
27 52 0.84
28 8 0.13
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (27 bp):
AGTAATTTTACAAACTAAGAGTATTTC
Found at i:27464879 original size:42 final size:42
Alignment explanation
Indices: 27464820--27464910 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
27464810 TGGCCCATAG
**
27464820 GCCCATTTCAATATCACAT-ATAATGTCAATGAAAGAATGCAA
1 GCCCATTTCAATATCACATGA-AATACCAATGAAAGAATGCAA
* *
27464862 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAAAGAATGCAA
27464904 -CCCATTT
1 GCCCATTT
27464911 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
41 7 0.16
42 36 0.82
43 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAAAGAATGCAA
Found at i:27465082 original size:23 final size:23
Alignment explanation
Indices: 27465052--27465217 Score: 269
Period size: 23 Copynumber: 7.1 Consensus size: 23
27465042 CCTTGCCTCT
*
27465052 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
27465075 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
27465098 TTTTGATCACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
27465122 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
27465145 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
27465169 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
27465192 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
27465215 TTT
1 TTT
27465218 TGCACTTCCT
Statistics
Matches: 132, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
23 90 0.68
24 42 0.32
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:27465110 original size:47 final size:47
Alignment explanation
Indices: 27465050--27465217 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
27465040 GGCCTTGCCT
* *
27465050 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
* *
27465097 CTTTTGATCACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
27465144 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
27465191 C-TTTAATAACTGGGGCATAAGCCCTTT
1 CTTTTAATAACTGGGGCATAAGCCCTTT
27465218 TGCACTTCCT
Statistics
Matches: 115, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
46 25 0.22
47 90 0.78
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:27465218 original size:70 final size:71
Alignment explanation
Indices: 27465052--27465219 Score: 277
Period size: 70 Copynumber: 2.4 Consensus size: 71
27465042 CCTTGCCTCT
* * * * *
27465052 TTTAATAACTGGGGCAAAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTTGATCACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAT
27465116 AAGCCC
66 AAGCCC
27465122 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAT
27465186 AAGCCC
66 AAGCCC
27465192 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
27465220 CACTTCCTCC
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
70 71 0.77
71 21 0.23
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (71 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAT
AAGCCC
Found at i:27465290 original size:9 final size:9
Alignment explanation
Indices: 27465276--27465332 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
27465266 ATCTCATGTG
27465276 CATATCATA
1 CATATCATA
*
27465285 CATATCATGTG
1 CATATCA--TA
27465296 CATATCATA
1 CATATCATA
* *
27465305 CATGTCATGTG
1 CATATCA--TA
27465316 CATATCATA
1 CATATCATA
27465325 CATATCAT
1 CATATCAT
27465333 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:27465292 original size:20 final size:20
Alignment explanation
Indices: 27465264--27465334 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
27465254 GCATTTATGA
*
27465264 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
27465284 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
27465304 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
27465324 ACATATCATGT
1 ACATATCATGT
27465335 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:27465299 original size:11 final size:11
Alignment explanation
Indices: 27465269--27465323 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
27465259 TATGAACATC
27465269 TCATGTGCATA
1 TCATGTGCATA
*
27465280 TCA--TACATA
1 TCATGTGCATA
27465289 TCATGTGCATA
1 TCATGTGCATA
* *
27465300 TCA--TACATG
1 TCATGTGCATA
27465309 TCATGTGCATA
1 TCATGTGCATA
27465320 TCAT
1 TCAT
27465324 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:27465399 original size:25 final size:25
Alignment explanation
Indices: 27465371--27465420 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
27465361 ATATATAAAC
* *
27465371 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
27465396 CCTAGGGGCAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
27465421 TATTATAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:27466638 original size:27 final size:27
Alignment explanation
Indices: 27466576--27466640 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
27466566 GGGCATATTC
27466576 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
27466603 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
27466630 GTCTTTTTACC
1 GTCATTTTACC
27466641 TAATAGGGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:27466867 original size:27 final size:27
Alignment explanation
Indices: 27466699--27466950 Score: 109
Period size: 27 Copynumber: 9.3 Consensus size: 27
27466689 TCTACAAACT
* * *
27466699 AAGGGTATTTCAGTAATTTCGTAAACC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*
27466726 AATGGTATTTCTA-TAATTTT-TAGAAAGTC
1 AAGGGTATTT-TAGTAATTTTGT--AAA-TC
* *
27466755 AAGGGTATTTCT-GTAACTTTGTAAATT
1 AAGGGTATTT-TAGTAATTTTGTAAATC
* * ** *
27466782 AGGGGTATTTTGGTAATTTTACAAATTG
1 AAGGGTATTTTAGTAATTTTGTAAA-TC
* *** *
27466810 AA-GGT-TTTTCGATAATTTCACAAACC
1 AAGGGTATTTTAG-TAATTTTGTAAATC
27466836 AAGGGTATTTTAGTAATTTTGTAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
* **** *
27466863 GAGGGTAAAACAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
**** * *
27466890 AAGGGTAAAACAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*** * *
27466917 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
27466944 AAGGGTA
1 AAGGGTA
27466951 AAACAGTAAT
Statistics
Matches: 183, Mismatches: 31, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
26 9 0.05
27 141 0.77
28 14 0.08
29 18 0.10
30 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.36
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTGTAAATC
Found at i:27467165 original size:27 final size:27
Alignment explanation
Indices: 27466848--27467158 Score: 345
Period size: 27 Copynumber: 11.6 Consensus size: 27
27466838 GGGTATTTTA
* * *
27466848 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
*
27466875 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
* **
27466902 GTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
27466929 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
27466956 GTAATTCAGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
27466983 GTAATTTTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * * *
27467010 ATAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
27467037 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
27467064 GTAATTCTGTAAGTCGAGGGT-AAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
27467090 ATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
27467117 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
*
27467144 GTAATTTTGTAAATC
1 GTAATTCTGTAAATC
27467159 GGGGGTACTT
Statistics
Matches: 250, Mismatches: 33, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
26 21 0.08
27 229 0.92
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCAAGGGTAAAACG
Found at i:27467192 original size:27 final size:27
Alignment explanation
Indices: 27467144--27467260 Score: 103
Period size: 27 Copynumber: 4.3 Consensus size: 27
27467134 GGGTAAAACG
** **
27467144 GTAATTTTGTAAATCGGGGGTACTTT-A
1 GTAATTTTACAAATCGAAGGTA-TTTCA
* *
27467171 GTAATTTTACAAGTCGAAGGTATTTCG
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
27467198 GTAAATTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
27467225 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
27467252 GTAATTTTA
1 GTAATTTTA
27467261 GTAAACTAAA
Statistics
Matches: 72, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
26 5 0.07
27 67 0.93
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:27467200 original size:54 final size:54
Alignment explanation
Indices: 27467142--27467265 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 54
27467132 AGGGGTAAAA
* *
27467142 CGGTAATTTTGTAAATCGGGGGTACTTT-AGTAATTTTACAAGTCGAA-GGTATTT
1 CGGTAATTTTGTAAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTT
* ** * *
27467196 CGGTAAATTTACAAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTT
1 CGGTAATTTTGTAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTT
27467250 CGGTAATTTTAGTAAA
1 CGGTAATTTT-GTAAA
27467266 CTAAAGTATT
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 6 0.11
54 48 0.84
55 3 0.05
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
CGGTAATTTTGTAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTT
Found at i:27467274 original size:27 final size:27
Alignment explanation
Indices: 27467170--27467275 Score: 74
Period size: 27 Copynumber: 3.9 Consensus size: 27
27467160 GGGGTACTTT
* *
27467170 AGTAATTTTACAAGTCGAAG-GTATTTC
1 AGTAATTTTACAA-ACTAAGAGTATTTC
* * * *
27467197 GGTAAATTTACAAA-TCGAGGGTATTTC
1 AGTAATTTTACAAACT-AAGAGTATTTC
* *
27467224 AGTATTTTTACAAACTAAGGGTATTTC
1 AGTAATTTTACAAACTAAGAGTATTTC
* *
27467251 GGTAATTTTAGTAAACTAA-AGTATT
1 AGTAATTTTA-CAAACTAAGAGTATT
27467276 CTAAACAGGG
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
26 2 0.03
27 52 0.84
28 8 0.13
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (27 bp):
AGTAATTTTACAAACTAAGAGTATTTC
Found at i:27471613 original size:47 final size:47
Alignment explanation
Indices: 27471515--27471637 Score: 123
Period size: 48 Copynumber: 2.6 Consensus size: 47
27471505 CAGGCTAATA
27471515 CATGT-CTCAGACAT-GTCTTACACTAGCTCTCGTCTCAATTCCGATGC
1 CATGTCCT-AGACATGGTCTTACACTAGCTCTCG-CTCAATTCCGATGC
*
27471562 CATGTCCTAGACATGGTCTTACACTGGCTCTCG-T-AATGTGGCCGATG-
1 CATGTCCTAGACATGGTCTTACACTAGCTCTCGCTCAAT-T--CCGATGC
* * *
27471609 CATGTCCCAGACAT-GTCATACATTAGCTC
1 CATGTCCTAGACATGGTCTTACACTAGCTC
27471638 ACAATAAACC
Statistics
Matches: 66, Mismatches: 5, Indels: 11
0.80 0.06 0.13
Matches are distributed among these distances:
45 3 0.05
46 14 0.21
47 24 0.36
48 25 0.38
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (47 bp):
CATGTCCTAGACATGGTCTTACACTAGCTCTCGCTCAATTCCGATGC
Found at i:27474791 original size:32 final size:33
Alignment explanation
Indices: 27474724--27474795 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
27474714 GAGCTTATTC
*
27474724 TTTATTTTGATATTTATATTTTTGGTAATTAGA
1 TTTATTTTGATATTTATATTTTTGGTAATAAGA
*
27474757 TTTATTTTGATATTTGTA-TTTTGGT-ATAAGGA
1 TTTATTTTGATATTTATATTTTTGGTAATAA-GA
27474789 TTTATTT
1 TTTATTT
27474796 GACCTTTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
31 3 0.08
32 16 0.44
33 17 0.47
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.61
Consensus pattern (33 bp):
TTTATTTTGATATTTATATTTTTGGTAATAAGA
Found at i:27475023 original size:31 final size:30
Alignment explanation
Indices: 27474988--27475047 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
27474978 ATTTTTTAAA
27474988 ATTTTAAAAAATTAAAAAATATATAAAACTT
1 ATTTTAAAAAATTAAAAAATAT-TAAAACTT
** *
27475019 ATTTTAAGTAATTAAAAATTATTAAAACT
1 ATTTTAAAAAATTAAAAAATATTAAAACT
27475048 AAAAAATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 7 0.27
31 19 0.73
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (30 bp):
ATTTTAAAAAATTAAAAAATATTAAAACTT
Found at i:27475052 original size:16 final size:16
Alignment explanation
Indices: 27475031--27475064 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
27475021 TTTAAGTAAT
* *
27475031 TAAAAATTATTAAAAC
1 TAAAAAATATAAAAAC
27475047 TAAAAAATATAAAAAC
1 TAAAAAATATAAAAAC
27475063 TA
1 TA
27475065 TTTTTTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (16 bp):
TAAAAAATATAAAAAC
Found at i:27477193 original size:15 final size:15
Alignment explanation
Indices: 27477160--27477195 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
27477150 CAAATATCTT
27477160 TTTTATTTTTAAATA
1 TTTTATTTTTAAATA
*
27477175 -TTTATTTTTTAATA
1 TTTTATTTTTAAATA
27477189 TTTTATT
1 TTTTATT
27477196 ATATCCGTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTATTTTTAAATA
Found at i:27481600 original size:26 final size:26
Alignment explanation
Indices: 27481544--27481614 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 26
27481534 ATGGAGTTTG
* *
27481544 CCACAAAGGCATTCCTTTCATATTTCC
1 CCACAAAGGC-TTTCTTTCATATTTCA
27481571 CCACAAAGGCTTTCTTTCAT-TTTACA
1 CCACAAAGGCTTTCTTTCATATTT-CA
27481597 CCACAAAGGCTTTCTTTC
1 CCACAAAGGCTTTCTTTC
27481615 CTAATGTGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.07
26 28 0.68
27 10 0.24
ACGTcount: A:0.25, C:0.31, G:0.08, T:0.35
Consensus pattern (26 bp):
CCACAAAGGCTTTCTTTCATATTTCA
Found at i:27483692 original size:16 final size:16
Alignment explanation
Indices: 27483671--27483702 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
27483661 AGAACGGAGT
27483671 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
27483687 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
27483703 TAACACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:27484312 original size:180 final size:180
Alignment explanation
Indices: 27484010--27484346 Score: 494
Period size: 180 Copynumber: 1.9 Consensus size: 180
27484000 CCGAGAGTTG
* * ** * *
27484010 TACCATGAGATAAATAATTTTTAGTGGAGAGAGGTTGGAACTGTCAGATAGTGAAATAGGGGTAT
1 TACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTATCAGACAGTGAAATAGGGGTAT
* * ** * *
27484075 CTTTAATGAATAATCTGTACTAATTGGCTAAACTAAAAATTATAAAAATTTTATGGTAAGAATAT
66 CTTTAATGAATAAACTATACTAATTGAATAAACCAAAAATTATAAAAATTTTATGGTAAGAAGAT
* *
27484140 ATGTGAGCCTAGTTTCTGGGAAAATTAGTTGTTCTCAATTTAGAGTCCCA
131 ATGTGAGCCTAGTTTCAGAGAAAATTAGTTGTTCTCAATTTAGAGTCCCA
*
27484190 TACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTATCGGACAGTGAAATAGGGGTAT
1 TACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTATCAGACAGTGAAATAGGGGTAT
* * *
27484255 CTTTAATGAATAAACTATACTAATTGAATAAACCAAAAATTCTGAAAATTTTATGGTAAGAGGAT
66 CTTTAATGAATAAACTATACTAATTGAATAAACCAAAAATTATAAAAATTTTATGGTAAGAAGAT
* *
27484320 ATGTGAGTCTATTTTCAGAGAAAATTA
131 ATGTGAGCCTAGTTTCAGAGAAAATTA
27484347 ATGGATCTTT
Statistics
Matches: 137, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
180 137 1.00
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (180 bp):
TACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTATCAGACAGTGAAATAGGGGTAT
CTTTAATGAATAAACTATACTAATTGAATAAACCAAAAATTATAAAAATTTTATGGTAAGAAGAT
ATGTGAGCCTAGTTTCAGAGAAAATTAGTTGTTCTCAATTTAGAGTCCCA
Found at i:27486473 original size:43 final size:43
Alignment explanation
Indices: 27486313--27486471 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
27486303 TATGTGTTAT
*
27486313 CGTGTTAGACCACGTCTGGGACGTTGGCATCGAT-TTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTA
* ** * *
27486357 CGTGTAAGACCATGTCTGGGATATTGGCATCG-TATATGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
* * *
27486399 CGTGTAAGACC-CTGTCTAGGATAG-TGGCATTGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATTTGATTA
*
27486442 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
27486472 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
42 28 0.30
43 35 0.38
44 30 0.32
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:27489958 original size:80 final size:80
Alignment explanation
Indices: 27489770--27490035 Score: 353
Period size: 80 Copynumber: 3.4 Consensus size: 80
27489760 TATTCGAATG
* * * * *
27489770 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGAGCTAAG-CCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGC
*
27489833 ATTTGTGTGAGTTACT
65 ATTTGTGCGAGTTACT
* *
27489849 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
27489913 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
27489928 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
* *
27489993 TTTGAGCAAG-TAGCT
66 TTTGTGCGAGTTA-CT
* * * *
27490008 ATATCC-GGCTAAATTCCGAAGGTACTTG
1 ATAACCGGGCTAAGTCCCGAAGGCACTTG
27490036 GTTCGGGAAT
Statistics
Matches: 169, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
78 44 0.26
79 50 0.30
80 75 0.44
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:27490029 original size:39 final size:40
Alignment explanation
Indices: 27489770--27489996 Score: 361
Period size: 40 Copynumber: 5.7 Consensus size: 40
27489760 TATTCGAATG
* *
27489770 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
27489810 A-ATTCCGAGCTAAG-CCCGAAGGCATTTGTGTGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
27489849 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
27489888 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
27489928 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
27489968 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
27489997 AGCAAGTAGC
Statistics
Matches: 171, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 9 0.05
39 50 0.29
40 112 0.65
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:27497773 original size:40 final size:40
Alignment explanation
Indices: 27497612--27497759 Score: 201
Period size: 40 Copynumber: 3.7 Consensus size: 40
27497602 TATTCGGATG
* *
27497612 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
27497652 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
27497691 ATACCCGGGCTAAGTCCCGAAGGCATTAGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
27497731 ATAACCGGGCTAAGTCCCAAAGGAATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
27497760 AGCAAGTAGC
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 34 0.36
40 60 0.64
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:27497781 original size:79 final size:79
Alignment explanation
Indices: 27497616--27497792 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 79
27497606 CGGATGATAA
* * * * * *
27497616 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTAGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGAATTTGA
**
27497681 GTGAGTTACTATAC
66 GCAAGTTACTATAC
*
27497695 CCGGGCTAAGTCCCGAAGGCATTAGTGCGAGTTACT-ATAACCGGGCTAAGTCCCAAAGGAATTT
1 CCGGGCTAAGTCCCGAAGGCATTAGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCAAAGGAATTT
*
27497759 GAGCAAG-TAGCTATAT
64 GAGCAAGTTA-CTATAC
* *
27497775 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
27497793 TACTTGATTC
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
78 2 0.02
79 59 0.71
80 22 0.27
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTAGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGAATTTGA
GCAAGTTACTATAC
Found at i:27501046 original size:40 final size:40
Alignment explanation
Indices: 27500991--27501247 Score: 293
Period size: 40 Copynumber: 6.5 Consensus size: 40
27500981 TGAATGATAC
*
27500991 CCGGGCTAAGTCCCGAAGTCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
27501031 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
27501071 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
* * ** *
27501111 CCGGGCTAAGACCCGAAGCCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
* * * * * ** *
27501151 CCAGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
* * * * * *
27501191 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
* *
27501231 CC-GGCTAAATTCCGAAG
1 CCGGGCTAAGTCCCGAAG
27501248 AAACTCGGTT
Statistics
Matches: 187, Mismatches: 28, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
39 12 0.06
40 173 0.93
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
Found at i:27514714 original size:40 final size:40
Alignment explanation
Indices: 27514669--27514835 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
27514659 CGGAATATAA
27514669 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
27514709 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
27514749 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
27514789 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
27514828 CCGGATAT
1 CCGGATAT
27514836 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 93 0.88
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:27522682 original size:40 final size:40
Alignment explanation
Indices: 27522637--27522803 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
27522627 CGGAATATAA
27522637 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
27522677 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
27522717 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
27522757 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
27522796 CCGGATAT
1 CCGGATAT
27522804 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 93 0.88
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:27528017 original size:22 final size:23
Alignment explanation
Indices: 27527959--27528037 Score: 79
Period size: 23 Copynumber: 3.4 Consensus size: 23
27527949 TTAAGTGCGT
* * * *
27527959 AAGTGAAAATGGCATTACGATGC
1 AAGTGACAGTGGCACTACAATGC
27527982 AAGTGACAGTGGCACTACAATGC
1 AAGTGACAGTGGCACTACAATGC
* * *
27528005 AAGTG-TAGTGGCACTTCAGTGC
1 AAGTGACAGTGGCACTACAATGC
27528027 AAAGTGACAGT
1 -AAGTGACAGT
27528038 CACATGTCCG
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
22 14 0.30
23 29 0.63
24 3 0.07
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (23 bp):
AAGTGACAGTGGCACTACAATGC
Found at i:27538022 original size:37 final size:37
Alignment explanation
Indices: 27537975--27538049 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
27537965 AAATGTGGTT
27537975 AGGTAATTCGATTATGGTACATGTTTAGTTAATTATA
1 AGGTAATTCGATTATGGTACATGTTTAGTTAATTATA
27538012 AGGTAATTCGATTATGGTACATGTTTAGTTAATTATA
1 AGGTAATTCGATTATGGTACATGTTTAGTTAATTATA
27538049 A
1 A
27538050 ACATAGGTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (37 bp):
AGGTAATTCGATTATGGTACATGTTTAGTTAATTATA
Found at i:27539966 original size:24 final size:24
Alignment explanation
Indices: 27539934--27540054 Score: 233
Period size: 24 Copynumber: 5.0 Consensus size: 24
27539924 GGGTAGAAAG
27539934 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
27539958 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
27539982 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
27540006 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
*
27540030 TTTACTATGGCACTATGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
27540054 T
1 T
27540055 CATAATAAGC
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 96 1.00
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.38
Consensus pattern (24 bp):
TTTACTATGGCACTGTGTGTGCGA
Found at i:27540067 original size:72 final size:72
Alignment explanation
Indices: 27539934--27540075 Score: 223
Period size: 72 Copynumber: 2.0 Consensus size: 72
27539924 GGGTAGAAAG
* * * * *
27539934 TTTACTATGGCACTGTGTGTGCGATTTACTATGGCACTGTGTGTGCGATTTACTATGGCACTGTG
1 TTTACTATGGCACTGTGTGTGCGATTTACTATGGCACTATGTGTGCGATATAATATAGCACTATG
27539999 TGTGCGA
66 TGTGCGA
27540006 TTTACTATGGCACTGTGTGTGCGATTTACTATGGCACTATGTGTGCGATCATAATA-AGCACTAT
1 TTTACTATGGCACTGTGTGTGCGATTTACTATGGCACTATGTGTGCGAT-ATAATATAGCACTAT
27540070 GTGTGC
65 GTGTGC
27540076 CACATTCGGT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
72 60 0.94
73 4 0.06
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.37
Consensus pattern (72 bp):
TTTACTATGGCACTGTGTGTGCGATTTACTATGGCACTATGTGTGCGATATAATATAGCACTATG
TGTGCGA
Found at i:27549454 original size:40 final size:40
Alignment explanation
Indices: 27549388--27549543 Score: 251
Period size: 40 Copynumber: 3.9 Consensus size: 40
27549378 ATTCGGATTG
*
27549388 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* * * *
27549427 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGATACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
27549467 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
27549507 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTT
27549544 TGTGACAACC
Statistics
Matches: 107, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 13 0.12
40 94 0.88
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:27560225 original size:40 final size:40
Alignment explanation
Indices: 27560161--27560381 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
27560151 ATTCAGATTG
27560161 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
27560200 ATATCCGGGCTAAGTCCCGACGGCATTTGTGCGAGATACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
27560240 ATAACCGGGCCAAGTCCCAAAAGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
27560280 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
27560320 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
27560360 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
27560382 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 29 0.18
40 133 0.82
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:27563297 original size:39 final size:39
Alignment explanation
Indices: 27563247--27563509 Score: 382
Period size: 39 Copynumber: 6.7 Consensus size: 39
27563237 TGTGTGAGAT
* *
27563247 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCAGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
27563286 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTT
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
27563325 TTATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* ** **
27563364 TTATATTCGGGCTAAGTCTTGAAGGCATTCGCCCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
** * * * *
27563403 TTATATCTAGGCTAAGTCCCAAAGGTATTCATACTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
27563442 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
27563481 TTATATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
27563510 TGTGTTGAAA
Statistics
Matches: 197, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 197 1.00
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:27566956 original size:56 final size:56
Alignment explanation
Indices: 27566847--27566958 Score: 127
Period size: 56 Copynumber: 2.0 Consensus size: 56
27566837 ATTTTGATGT
* * *** * *
27566847 CGGATTTGTGGTCCCAATACCACTATTCTGACTAGGCCCTATTTCGGGATGTTACA
1 CGGATATGTGGTCCCAAAACCACTATTCTGACTAGGCCCTAAAACCGAATGTTACA
**
27566903 CGGATATGTGGTCCCAAAACCACTATTCTGACTAGGGTC-AAAACCGAACTGTTACA
1 CGGATATGTGGTCCCAAAACCACTATTCTGACTAGGCCCTAAAACCGAA-TGTTACA
27566959 ATTCTCCCCC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
55 4 0.09
56 42 0.91
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (56 bp):
CGGATATGTGGTCCCAAAACCACTATTCTGACTAGGCCCTAAAACCGAATGTTACA
Found at i:27575015 original size:20 final size:20
Alignment explanation
Indices: 27574992--27575031 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
27574982 GAAATTTATA
*
27574992 AAATAAGTTGTAAA-TGTGTG
1 AAATAA-TTGAAAATTGTGTG
27575012 AAATAATTGAAAATTGTGTG
1 AAATAATTGAAAATTGTGTG
27575032 TTGCAATAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (20 bp):
AAATAATTGAAAATTGTGTG
Found at i:27575564 original size:47 final size:48
Alignment explanation
Indices: 27575494--27575609 Score: 164
Period size: 47 Copynumber: 2.4 Consensus size: 48
27575484 TATGTGTGCT
* *
27575494 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGA-TATGAGAGCC
* *
27575542 AGTGTAAGA-CATGTCTAGGACATGGCATCGGCCTCGATATGTGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCC
*
27575589 AGTGTAAGACCATATCTAGGA
1 AGTGTAAGACCATGTCTAGGA
27575610 TACGGCATTG
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
47 41 0.67
48 20 0.33
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCC
Found at i:27579540 original size:23 final size:23
Alignment explanation
Indices: 27579510--27579560 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
27579500 TCCCTAGCAT
27579510 ACGGGCGTGTGCTCTATACCCAC
1 ACGGGCGTGTGCTCTATACCCAC
27579533 ACGGGCGTGTGCTCTATACCCAC
1 ACGGGCGTGTGCTCTATACCCAC
27579556 ACGGG
1 ACGGG
27579561 TGTATGAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.18, C:0.33, G:0.29, T:0.20
Consensus pattern (23 bp):
ACGGGCGTGTGCTCTATACCCAC
Found at i:27582833 original size:42 final size:43
Alignment explanation
Indices: 27582725--27582895 Score: 127
Period size: 43 Copynumber: 4.0 Consensus size: 43
27582715 AGCTCTTACA
* * *
27582725 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAATTATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGAAATCAAATATCG
* *
27582768 ATGCCACTGTCCCAGAAAGGGTCTTACATGAAATCAAATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACATGAAATCAAATATCG
* * * *
27582810 ATGCTGA-TGTCCTAGACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGC-CACTGTCCCAGACATGGTCTTACATG-AAATCA-AATATCG
* ** * * *
27582854 ATGCCAAC-ATCCCAGATGTAGTCTTACACGAAATCACATATC
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGAAATCAAATATC
27582896 AAATCCTATG
Statistics
Matches: 101, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
42 28 0.28
43 47 0.47
44 26 0.26
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGAAATCAAATATCG
Found at i:27582845 original size:43 final size:44
Alignment explanation
Indices: 27582725--27582859 Score: 129
Period size: 43 Copynumber: 3.1 Consensus size: 44
27582715 AGCTCTTACA
* *
27582725 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AATCAATTATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
* *
27582768 ATGCCACTGTCCCAGAAAGGGTCTTACATG-AAATCAAATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
* * * *
27582810 ATGCTGA-TGTCCTAGACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGC-CACTGTCCCAGACATGGTCTTACATGTAAATCA-AATATCG
27582854 ATGCCA
1 ATGCCA
27582860 ACATCCCAGA
Statistics
Matches: 75, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
42 27 0.36
43 40 0.53
44 8 0.11
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (44 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
Found at i:27585578 original size:19 final size:19
Alignment explanation
Indices: 27585554--27585592 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
27585544 TCTCATTATC
27585554 AACCTTTTGAGCATCAATA
1 AACCTTTTGAGCATCAATA
27585573 AACCTTTTGAGCATCAATA
1 AACCTTTTGAGCATCAATA
27585592 A
1 A
27585593 TCTGTTGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (19 bp):
AACCTTTTGAGCATCAATA
Found at i:27587094 original size:18 final size:18
Alignment explanation
Indices: 27587050--27587124 Score: 55
Period size: 18 Copynumber: 4.1 Consensus size: 18
27587040 AAGAAACATT
27587050 ATCAGAA-CTAGAATCAAA
1 ATCAGAATC-AGAATCAAA
* *
27587068 ATGAGAATCAGAATCAGA
1 ATCAGAATCAGAATCAAA
* * *
27587086 ATCATAATCGGTATCAAGTA
1 ATCAGAATCAGAATCAA--A
*
27587106 A-CAGAATCAAAATCAAA
1 ATCAGAATCAGAATCAAA
27587123 AT
1 AT
27587125 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
17 2 0.05
18 26 0.62
19 12 0.29
20 2 0.05
ACGTcount: A:0.52, C:0.15, G:0.13, T:0.20
Consensus pattern (18 bp):
ATCAGAATCAGAATCAAA
Found at i:27587101 original size:24 final size:24
Alignment explanation
Indices: 27587049--27587119 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 24
27587039 TAAGAAACAT
27587049 TATCAGAACTAGAATCAAAAT-GAG
1 TATCAGAAC-AGAATCAAAATCGAG
* *
27587073 AATCAGAATCAGAATCATAATCG-G
1 TATCAGAA-CAGAATCAAAATCGAG
27587097 TATCAAGTAACAGAATCAAAATC
1 TATC-AG-AACAGAATCAAAATC
27587120 AAAATGTGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 21 0.54
25 16 0.41
26 2 0.05
ACGTcount: A:0.49, C:0.15, G:0.14, T:0.21
Consensus pattern (24 bp):
TATCAGAACAGAATCAAAATCGAG
Found at i:27587291 original size:27 final size:26
Alignment explanation
Indices: 27587243--27587302 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
27587233 GTGAGGCTGC
*
27587243 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
27587270 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
27587296 CAGATAT
1 CAGATAT
27587303 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:27587668 original size:27 final size:27
Alignment explanation
Indices: 27587638--27587882 Score: 285
Period size: 27 Copynumber: 9.1 Consensus size: 27
27587628 AACACCCTAG
* *
27587638 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
27587665 GGGTAAAACGGTAATTTTGTAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* ** *
27587692 GGGCAAAATAGTAATTTTGTCAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
27587719 GGGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
27587746 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
27587773 GGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*** * *
27587800 GGGTAAAATAATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
27587827 GGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
** *
27587854 GGGTAAAATAGCAATTTTGTAAATC-A
1 GGGTAAAACGGTAATTTTGTAAATCGA
27587880 GGG
1 GGG
27587883 ATACTTTGGT
Statistics
Matches: 185, Mismatches: 33, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
26 4 0.02
27 181 0.98
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GGGTAAAACGGTAATTTTGTAAATCGA
Found at i:27587745 original size:81 final size:81
Alignment explanation
Indices: 27587638--27587882 Score: 359
Period size: 81 Copynumber: 3.0 Consensus size: 81
27587628 AACACCCTAG
* * * *
27587638 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGCAAAATAG
1 GGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAG
*
27587703 TAATTTTGTCAATCGA
66 TAATTTTGTAAATCGA
* * *
27587719 GGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAA-CG
1 GGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAG
*
27587783 ATAATTCTGTAAATCGA
66 -TAATTTTGTAAATCGA
* *
27587800 GGGTAAAATAATAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATAG
1 GGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAG
*
27587865 CAATTTTGTAAATC-A
66 TAATTTTGTAAATCGA
27587880 GGG
1 GGG
27587883 ATACTTTGGT
Statistics
Matches: 146, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
80 5 0.03
81 140 0.96
82 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (81 bp):
GGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAG
TAATTTTGTAAATCGA
Found at i:27587898 original size:54 final size:54
Alignment explanation
Indices: 27587638--27587882 Score: 357
Period size: 54 Copynumber: 4.6 Consensus size: 54
27587628 AACACCCTAG
* * * *
27587638 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGA
* * * *
27587692 GGGCAAAATAGTAATTTTGTCAATCGAGGGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGA
* *
27587746 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGA
* * *
27587800 GGGTAAAATAATAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGA
*
27587854 GGGTAAAATAGCAATTTTGTAAATC-AGGG
1 GGGTAAAATAGTAATTTTGTAAATCGAGGG
27587883 ATACTTTGGT
Statistics
Matches: 170, Mismatches: 21, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
53 4 0.02
54 166 0.98
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGA
Found at i:27587922 original size:27 final size:27
Alignment explanation
Indices: 27587892--27587956 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
27587882 GATACTTTGG
27587892 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* * *
27587919 TAATTTTACAGGTCGAGGGTATTTTAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
*
27587946 TAATTTCACAA
1 TAATTTTACAA
27587957 ATTAGGGGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:27587951 original size:81 final size:81
Alignment explanation
Indices: 27587866--27588140 Score: 308
Period size: 81 Copynumber: 3.4 Consensus size: 81
27587856 GTAAAATAGC
* * * * * * *
27587866 AATTTTGTAAATC-AGGGATACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAG
1 AATTTTATAAATCAAGGGGTATTTTGGTAATTTTACAA-ACAAGGGTATTTTAATAATTTTACAA
**
27587930 GTC-GAGGGTATTTTAGT
65 ACCAG-GGGTATTTTAGT
* * * * *
27587947 AATTTCACAAAT-TAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAA
1 AATTTTATAAATCAAGGGGTATTTTGGTAATTTTACAAAC-AAGGGTATTTTAATAATTTTACAA
27588011 ACCAGGGGTATTTTAGT
65 ACCAGGGGTATTTTAGT
* * *
27588028 AATTTTATAAA-CTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAA
1 AATTTTATAAATCAAGGGGTATTTTGGTAATTTTACAAAC-AAGGGTATTTTAATAATTTTACAA
27588092 ACCAGGGGTATTTTAGT
65 ACCAGGGGTATTTTAGT
* *
27588109 AATTTTGTAAACCAA-GGGTATTTTGGTAATTT
1 AATTTTATAAATCAAGGGGTATTTTGGTAATTT
27588141 GGTAAACTAA
Statistics
Matches: 167, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
80 1 0.01
81 163 0.98
82 3 0.02
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (81 bp):
AATTTTATAAATCAAGGGGTATTTTGGTAATTTTACAAACAAGGGTATTTTAATAATTTTACAAA
CCAGGGGTATTTTAGT
Found at i:27587965 original size:27 final size:27
Alignment explanation
Indices: 27587935--27588140 Score: 261
Period size: 27 Copynumber: 7.6 Consensus size: 27
27587925 TACAGGTCGA
* *
27587935 GGGTATTTTAGTAATTTCACAAATTAG
1 GGGTATTTTAGTAATTTTACAAACTAG
*
27587962 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTAGTAATTTTACAAACTAG
*
27587989 GGGTATTTT-GATAATTTTACAAACCAG
1 GGGTATTTTAG-TAATTTTACAAACTAG
*
27588016 GGGTATTTTAGTAATTTTATAAACTAG
1 GGGTATTTTAGTAATTTTACAAACTAG
* * * *
27588043 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACTAG
*
27588070 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAACTAG
** * *
27588097 GGGTATTTTAGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACTAG
*
27588124 GGGTATTTTGGTAATTT
1 GGGTATTTTAGTAATTT
27588141 GGTAAACTAA
Statistics
Matches: 160, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 158 0.99
28 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACTAG
Found at i:27587977 original size:54 final size:54
Alignment explanation
Indices: 27587891--27588140 Score: 270
Period size: 54 Copynumber: 4.6 Consensus size: 54
27587881 GGATACTTTG
** * * * ** *
27587891 GTAATTTTACAAGTCGAGGGTATTTCAATAATTTTAC-AGGTCGAGGGTATTTTA
1 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAG-GGGTATTTTA
* ** * *
27587945 GTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-
1 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTA
* * *
27587998 GATAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAACTAGGGGTATTTTG
1 G-TAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTA
* * *
27588053 GTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTA
1 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTA
** *
27588107 GTAATTTTGTAAACCAAGGGTATTTTGGTAATTT
1 GTAATTTTACAAACCAAGGGTATTTTAGTAATTT
27588141 GGTAAACTAA
Statistics
Matches: 168, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 163 0.97
55 4 0.02
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTA
Found at i:27588147 original size:81 final size:81
Alignment explanation
Indices: 27587935--27588140 Score: 315
Period size: 81 Copynumber: 2.5 Consensus size: 81
27587925 TACAGGTCGA
* * * * * *
27587935 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
1 GGGTATTTTAGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTGA
27588000 TAATTTTACAAACCAG
66 TAATTTTACAAACCAG
27588016 GGGTATTTTAGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTT-A
1 GGGTATTTTAGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTGA
27588080 GTAATTTTACAAACCAG
66 -TAATTTTACAAACCAG
* * *
27588097 GGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTTGGTAATTT
1 GGGTATTTTAGTAATTTTATAAACTAGGGGTATTTTGGTAATTT
27588141 GGTAAACTAA
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 1 0.01
81 114 0.99
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTGA
TAATTTTACAAACCAG
Found at i:27588155 original size:26 final size:27
Alignment explanation
Indices: 27588009--27588156 Score: 100
Period size: 27 Copynumber: 5.5 Consensus size: 27
27587999 ATAATTTTAC
* * **
27588009 AAACCAGGGGTATTTTAGTAATTTTAT
1 AAACCAAGAGTATTTTAGTAATTTGGT
* * * * **
27588036 AAACTAGGGGTATTTTGGTAATTTTAT
1 AAACCAAGAGTATTTTAGTAATTTGGT
* * ***
27588063 AAACAAAGGGTATTTTAGTAATTTTAC
1 AAACCAAGAGTATTTTAGTAATTTGGT
* * *
27588090 AAACCAGGGGTATTTTAGTAATTTTGT
1 AAACCAAGAGTATTTTAGTAATTTGGT
* *
27588117 AAACCAAGGGTATTTTGGTAATTTGGT
1 AAACCAAGAGTATTTTAGTAATTTGGT
*
27588144 AAACTAA-AGTATT
1 AAACCAAGAGTATT
27588157 CTAAACAGGG
Statistics
Matches: 106, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 5 0.05
27 101 0.95
ACGTcount: A:0.34, C:0.07, G:0.20, T:0.39
Consensus pattern (27 bp):
AAACCAAGAGTATTTTAGTAATTTGGT
Found at i:27589093 original size:48 final size:48
Alignment explanation
Indices: 27588986--27589101 Score: 146
Period size: 48 Copynumber: 2.4 Consensus size: 48
27588976 GTGTTACAAT
* * *
27588986 GAGAGCCAGTGGAAGACCATGTCTTGGACATGGCATCGGTATTCAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTACTCAGAC
* *
27589034 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CCTC-GAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTACTCAGAC
*
27589080 ATGTGAGCCAGTGTAAGACCAT
1 --GAGAGCCAGTGTAAGACCAT
27589102 ATCTAAGATA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 3 0.05
47 2 0.03
48 54 0.92
ACGTcount: A:0.27, C:0.22, G:0.31, T:0.21
Consensus pattern (48 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTACTCAGAC
Found at i:27593068 original size:38 final size:39
Alignment explanation
Indices: 27592994--27593244 Score: 368
Period size: 38 Copynumber: 6.5 Consensus size: 39
27592984 GTGTGAGATA
*
27592994 TATATCCGGGCTAATTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
27593033 TATATCCGGGCTAAGTCCC-AAAGCATTCATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
27593071 TATATTCGGGCTAAGTCCC-AAGGCATTCGTGGTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
27593109 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
27593148 TATA-CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
27593186 TATATCC-GGCTAAGTCCTGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
27593223 TACATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
27593245 CATGCTTTGT
Statistics
Matches: 193, Mismatches: 14, Indels: 9
0.89 0.06 0.04
Matches are distributed among these distances:
37 17 0.09
38 126 0.65
39 43 0.22
40 7 0.04
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:27593174 original size:115 final size:114
Alignment explanation
Indices: 27592994--27593244 Score: 362
Period size: 115 Copynumber: 2.2 Consensus size: 114
27592984 GTGTGAGATA
*
27592994 TATATCCGGGCTAATTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGCAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGCAT
* * *
27593059 TCATGCTGGTGTTATATTCGGGCTAAGTCC-CAAGGCATTCGTGGTGGTGT
66 TCATGCTGGTGTTATA-TCCGGCTAAGTCCTCAAGGC-TTCGTGCTGGTAT
*
27593109 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATA-CCGGGCTAAGTCCCGAAGGCA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCC-AAAGCA
* * *
27593173 TTCGTGCTGGTGTTATATCCGGCTAAGTCCTGAAGGCTTTGTGCTGGTAT
65 TTCATGCTGGTGTTATATCCGGCTAAGTCCTCAAGGCTTCGTGCTGGTAT
*
27593223 TACATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
27593245 CATGCTTTGT
Statistics
Matches: 123, Mismatches: 9, Indels: 7
0.88 0.06 0.05
Matches are distributed among these distances:
114 46 0.37
115 69 0.56
116 8 0.07
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (114 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGCAT
TCATGCTGGTGTTATATCCGGCTAAGTCCTCAAGGCTTCGTGCTGGTAT
Found at i:27599489 original size:39 final size:39
Alignment explanation
Indices: 27599439--27599615 Score: 239
Period size: 39 Copynumber: 4.5 Consensus size: 39
27599429 GTGTGAGATA
*
27599439 TATATCCGGGCTAATTCCCGAAGGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
*
27599478 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
* *
27599517 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGGTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
* * * *
27599556 TATATCCGGGCTAAGTCCTGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
* *
27599594 CACATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
27599616 CATGCTTTGT
Statistics
Matches: 124, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 19 0.15
39 98 0.79
40 7 0.06
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
Found at i:27599536 original size:78 final size:77
Alignment explanation
Indices: 27599406--27599615 Score: 237
Period size: 78 Copynumber: 2.7 Consensus size: 77
27599396 AGGATTTTAA
* * *
27599406 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAG-ATATATATCCGGGCTAATTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGG-CTTCGTGCT-AGTAT-TATATCCGGGCTAAGTCCCGAAGGCATTC
27599468 GTGCTAGTGTTATAT
63 GTGCTAGTGTTATAT
* *
27599483 CTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGC-TTCGTGCTAGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGT
* *
27599548 GGTGGTGTTATAT
65 GCTAGTGTTATAT
* * * * *
27599561 CCGGGCTAAGTCCTGAAGGCTTTGTGCTGGTATCACATCCGGGCTTAAAGTCCCG
1 CCGGGCTAAGTCCCGAAGGCTTCGTGCTAGTATTATATCCGGGC-T-AAGTCCCG
27599616 CATGCTTTGT
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
76 1 0.01
77 37 0.33
78 65 0.58
79 10 0.09
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCTTCGTGCTAGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
CTAGTGTTATAT
Found at i:27607488 original size:16 final size:16
Alignment explanation
Indices: 27607467--27607500 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
27607457 TTACTAACAC
27607467 ATATAGCGTCTATCAT
1 ATATAGCGTCTATCAT
27607483 ATATAGCGTCTATCAT
1 ATATAGCGTCTATCAT
27607499 AT
1 AT
27607501 GAATCATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (16 bp):
ATATAGCGTCTATCAT
Found at i:27612131 original size:42 final size:42
Alignment explanation
Indices: 27612072--27612234 Score: 168
Period size: 42 Copynumber: 3.9 Consensus size: 42
27612062 TCGGCATTAG
*
27612072 TATGAG-TTATCATGTAAGACCATATCTGGGATATGGCGTTGA
1 TATGAGATT-TCATGTAAGACCATATCTGGGACATGGCGTTGA
* * **
27612114 TATGAGATTT-ACGGTAAGAGCACGTCTGGGACATGGCGTTGA
1 TATGAGATTTCA-TGTAAGACCATATCTGGGACATGGCGTTGA
* * * * * *
27612156 AATGAGAATTCATATAAGACCATATCTGGGATATGGCATCGA
1 TATGAGATTTCATGTAAGACCATATCTGGGACATGGCGTTGA
* * *
27612198 TGTGAGATCTCATGTAAGACCATGTCTGGGACATGGC
1 TATGAGATTTCATGTAAGACCATATCTGGGACATGGC
27612235 ATTAGCATCT
Statistics
Matches: 96, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
41 1 0.01
42 92 0.96
43 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (42 bp):
TATGAGATTTCATGTAAGACCATATCTGGGACATGGCGTTGA
Found at i:27612179 original size:84 final size:84
Alignment explanation
Indices: 27612081--27612234 Score: 220
Period size: 84 Copynumber: 1.8 Consensus size: 84
27612071 GTATGAGTTA
* * * * *
27612081 TCATGTAAGACCATATCTGGGATATGGCGTTGATATGAGAT-TTACGGTAAGAGCACGTCTGGGA
1 TCATATAAGACCATATCTGGGATATGGCATCGATATGAGATCTCA-GGTAAGACCACGTCTGGGA
27612145 CATGGCGTTGAAATGAGAAT
65 CATGGCGTTGAAATGAGAAT
* * *
27612165 TCATATAAGACCATATCTGGGATATGGCATCGATGTGAGATCTCATGTAAGACCATGTCTGGGAC
1 TCATATAAGACCATATCTGGGATATGGCATCGATATGAGATCTCAGGTAAGACCACGTCTGGGAC
27612230 ATGGC
66 ATGGC
27612235 ATTAGCATCT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
84 59 0.97
85 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (84 bp):
TCATATAAGACCATATCTGGGATATGGCATCGATATGAGATCTCAGGTAAGACCACGTCTGGGAC
ATGGCGTTGAAATGAGAAT
Found at i:27615930 original size:27 final size:27
Alignment explanation
Indices: 27615778--27616118 Score: 245
Period size: 27 Copynumber: 12.7 Consensus size: 27
27615768 TTGAGTTTAC
* * *
27615778 TAAAATTACTAAAATACCCCCA-ATTG
1 TAAAATTACTGAAATACCCTCAGTTTG
* * *
27615804 TAAAATTAC-CAAAGTACCCCCAGTTTA
1 TAAAATTACTGAAA-TACCCTCAGTTTG
* * *
27615831 TAAAATTACCGAAATACCATC-GATTG
1 TAAAATTACTGAAATACCCTCAGTTTG
* *
27615857 TAAAATTACTAAAATACCCT-TGATTTG
1 TAAAATTACTGAAATACCCTCAG-TTTG
*
27615884 TAAAATTACCGAAATACCCTCAGTTTG
1 TAAAATTACTGAAATACCCTCAGTTTG
* * *
27615911 CAAAATTACTAAAATACCCT-TGATTTG
1 TAAAATTACTGAAATACCCTCAG-TTTG
* **
27615938 TAAAATTACTGAAATACCCT-TGACATG
1 TAAAATTACTGAAATACCCTCAG-TTTG
* * *
27615965 TAAAATTAC-CAAAGTACGCC-CGGTTTA
1 TAAAATTACTGAAA-TAC-CCTCAGTTTG
* * *
27615992 TAAAACTA-TCGAAATACCGTC-GATTG
1 TAAAATTACT-GAAATACCCTCAGTTTG
* * *
27616018 TAAAATTACTAAAATACCCTCAATTTT
1 TAAAATTACTGAAATACCCTCAGTTTG
* * *
27616045 TAAAATTACCGAAATACCCTTAATTTG
1 TAAAATTACTGAAATACCCTCAGTTTG
* *
27616072 CAAAATTACTGAAATACCCT-TGATTTG
1 TAAAATTACTGAAATACCCTCAG-TTTG
27616099 TAAAATTACTGAAATACCCT
1 TAAAATTACTGAAATACCCT
27616119 TGTAGGGTAG
Statistics
Matches: 251, Mismatches: 48, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
25 3 0.01
26 62 0.25
27 176 0.70
28 10 0.04
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCAGTTTG
Found at i:27616051 original size:161 final size:161
Alignment explanation
Indices: 27615802--27616120 Score: 539
Period size: 161 Copynumber: 2.0 Consensus size: 161
27615792 TACCCCCAAT
*
27615802 TGTAAAATTACCAAAGTACCCCCAGTTTATAAAATTACCGAAATACCATCGATTGTAAAATTACT
1 TGTAAAATTACCAAAGTACCCCCAGTTTATAAAACTACCGAAATACCATCGATTGTAAAATTACT
** *
27615867 AAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTT
66 AAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCAATTTGCAAAATTACTAAAATACCCTT
27615932 GATTTGTAAAATTACTGAAATACCCTTGACA
131 GATTTGTAAAATTACTGAAATACCCTTGACA
* * * *
27615963 TGTAAAATTACCAAAGTACGCCCGGTTTATAAAACTATCGAAATACCGTCGATTGTAAAATTACT
1 TGTAAAATTACCAAAGTACCCCCAGTTTATAAAACTACCGAAATACCATCGATTGTAAAATTACT
* * *
27616028 AAAATACCCTCAATTTTTAAAATTACCGAAATACCCTTAATTTGCAAAATTACTGAAATACCCTT
66 AAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCAATTTGCAAAATTACTAAAATACCCTT
27616093 GATTTGTAAAATTACTGAAATACCCTTG
131 GATTTGTAAAATTACTGAAATACCCTTG
27616121 TAGGGTAGAA
Statistics
Matches: 147, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
161 147 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (161 bp):
TGTAAAATTACCAAAGTACCCCCAGTTTATAAAACTACCGAAATACCATCGATTGTAAAATTACT
AAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCAATTTGCAAAATTACTAAAATACCCTT
GATTTGTAAAATTACTGAAATACCCTTGACA
Found at i:27616119 original size:27 final size:27
Alignment explanation
Indices: 27615831--27616120 Score: 286
Period size: 27 Copynumber: 10.8 Consensus size: 27
27615821 CCCCAGTTTA
* * *
27615831 TAAAATTACCGAAATACCATCGA-TTG
1 TAAAATTACTGAAATACCCTTGATTTG
*
27615857 TAAAATTACTAAAATACCCTTGATTTG
1 TAAAATTACTGAAATACCCTTGATTTG
* *
27615884 TAAAATTACCGAAATACCC-TCAGTTTG
1 TAAAATTACTGAAATACCCTTGA-TTTG
* *
27615911 CAAAATTACTAAAATACCCTTGATTTG
1 TAAAATTACTGAAATACCCTTGATTTG
**
27615938 TAAAATTACTGAAATACCCTTGACATG
1 TAAAATTACTGAAATACCCTTGATTTG
* * * *
27615965 TAAAATTAC-CAAAGTACGCC-CGGTTTA
1 TAAAATTACTGAAA-TAC-CCTTGATTTG
* * *
27615992 TAAAACTA-TCGAAATACCGTCGA-TTG
1 TAAAATTACT-GAAATACCCTTGATTTG
* ** *
27616018 TAAAATTACTAAAATACCCTCAATTTT
1 TAAAATTACTGAAATACCCTTGATTTG
* *
27616045 TAAAATTACCGAAATACCCTTAATTTG
1 TAAAATTACTGAAATACCCTTGATTTG
*
27616072 CAAAATTACTGAAATACCCTTGATTTG
1 TAAAATTACTGAAATACCCTTGATTTG
27616099 TAAAATTACTGAAATACCCTTG
1 TAAAATTACTGAAATACCCTTG
27616121 TAGGGTAGAA
Statistics
Matches: 215, Mismatches: 39, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
26 44 0.20
27 164 0.76
28 7 0.03
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTTGATTTG
Found at i:27616119 original size:54 final size:53
Alignment explanation
Indices: 27615778--27616118 Score: 344
Period size: 54 Copynumber: 6.4 Consensus size: 53
27615768 TTGAGTTTAC
** * * * * ** *
27615778 TAAAATTACTAAAATACCCCCAATTGTAAAATTACCAAAGTACCC-CCAGTTTA
1 TAAAATTACCGAAATACCCTCGATTGTAAAATTACTAAAATACCCTTGA-TTTG
*
27615831 TAAAATTACCGAAATACCATCGATTGTAAAATTACTAAAATACCCTTGATTTG
1 TAAAATTACCGAAATACCCTCGATTGTAAAATTACTAAAATACCCTTGATTTG
* *
27615884 TAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTTGATTTG
1 TAAAATTACCGAAATACCCTC-GATTGTAAAATTACTAAAATACCCTTGATTTG
* * * * * * * *
27615938 TAAAATTACTGAAATACCCTTGACATGTAAAATTACCAAAGTACGCC-CGGTTTA
1 TAAAATTACCGAAATACCCTCGA-TTGTAAAATTACTAAAATAC-CCTTGATTTG
* * * ** *
27615992 TAAAACTATCGAAATACCGTCGATTGTAAAATTACTAAAATACCCTCAATTTT
1 TAAAATTACCGAAATACCCTCGATTGTAAAATTACTAAAATACCCTTGATTTG
** * *
27616045 TAAAATTACCGAAATACCCTTAATTTGCAAAATTACTGAAATACCCTTGATTTG
1 TAAAATTACCGAAATACCCTCGA-TTGTAAAATTACTAAAATACCCTTGATTTG
*
27616099 TAAAATTACTGAAATACCCT
1 TAAAATTACCGAAATACCCT
27616119 TGTAGGGTAG
Statistics
Matches: 237, Mismatches: 45, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
52 2 0.01
53 101 0.43
54 132 0.56
55 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (53 bp):
TAAAATTACCGAAATACCCTCGATTGTAAAATTACTAAAATACCCTTGATTTG
Found at i:27616132 original size:27 final size:27
Alignment explanation
Indices: 27616075--27616565 Score: 542
Period size: 27 Copynumber: 18.2 Consensus size: 27
27616065 TAATTTGCAA
* ** *
27616075 AATTACTGAAATACCCTTG-ATTTGTAA
1 AATTACTAAAATACCCTTGTA-GGGTAG
*
27616102 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
* *
27616129 AATT-CTAAAATACCATTATAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
27616155 AATTA-TCAAAATACCCTTGTAGGGTAG
1 AATTACT-AAAATACCCTTGTAGGGTAG
* * *
27616182 AAATACCAAAATACCTTTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
* * *
27616209 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
*
27616236 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
** * *
27616263 AATTACCGAAATACCCTTGTAAGGTAA
1 AATTACTAAAATACCCTTGTAGGGTAG
*
27616290 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
* *
27616317 AATTACCAAAATACCCTTGTAGGATAG
1 AATTACTAAAATACCCTTGTAGGGTAG
* * * *
27616344 AAATACCAAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
* *
27616371 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
** *
27616398 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
* *
27616425 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
** *
27616452 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
* * * *
27616479 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
*
27616506 AATTA-TCGAAATACACC-TGTAGGGTAG
1 AATTACT-AAAATAC-CCTTGTAGGGTAG
*
27616533 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
27616560 AATTAC
1 AATTAC
27616566 CGGGATAACC
Statistics
Matches: 404, Mismatches: 52, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
26 27 0.07
27 373 0.92
28 4 0.01
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACTAAAATACCCTTGTAGGGTAG
Found at i:27616585 original size:54 final size:54
Alignment explanation
Indices: 27616075--27616590 Score: 601
Period size: 54 Copynumber: 9.6 Consensus size: 54
27616065 TAATTTGCAA
* ** * * * *
27616075 AATTACTGAAATACCCTTG-ATTTGTAAAATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTA-GGGTAGAATTACTAAAATACCCCTGTAAGGTAG
** * * * *
27616129 AATT-CTAAAATACCATTATAGGGTAGAATTA-TCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACT-AAAATACCCCTGTAAGGTAG
* * * *
27616182 AAATACCAAAATACCTTTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAG
* ** * *
27616236 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAAGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAG
* * *
27616290 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGT-AGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAAGG-TAG
* * * *
27616344 AAATACCAAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAG
*
27616398 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAG
* * *
27616452 AATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAG
* *
27616506 AATTATCGAAATACACC-TGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATAC-CCTTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAG
** * * *
27616560 AATTACCGGGATAACCTTGTGGGGTAAAATT
1 AATTACCGAAATACCCTTGTAGGGTAGAATT
27616591 CCCATTTTGC
Statistics
Matches: 407, Mismatches: 47, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
52 1 0.00
53 46 0.11
54 354 0.87
55 6 0.01
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAG
Found at i:27616856 original size:27 final size:26
Alignment explanation
Indices: 27616818--27616897 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
27616808 TGAAGGAAGC
27616818 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
27616845 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
27616871 GTATCTGGTGACTTTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
27616898 ATTGACCAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.19
27 39 0.81
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:27617130 original size:98 final size:97
Alignment explanation
Indices: 27616952--27617186 Score: 308
Period size: 98 Copynumber: 2.4 Consensus size: 97
27616942 GTGTGCCGTT
* * * * * * *
27616952 ATTGTAGGCTTCATGCTGATTATAGACGCGTTATCAATGGTTGACTGCCGGTCATGTTATCAAAG
1 ATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGACTACCGATCATGTTACCAAAG
* * *
27617017 GCTATGTGTCGTTATTGTGGGCTTCGTATTGAG
66 GCTATGTGCCATTATTGTGGGCTTCGTA-CGAG
* * *
27617050 ATTGTAGGCTTCGTACCGATTATAGACCCGTTATCAATGGCTGAGTACCGATCATGTTACCGAAG
1 ATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGACTACCGATCATGTTACCAAAG
* *
27617115 GCTGTGTGCCATTATTGTGGGCTTCGTACGAT
66 GCTATGTGCCATTATTGTGGGCTTCGTACGAG
* *
27617147 ATTGTGGGCTTCGTGCCGATTATAGACCCGTTATCGATGG
1 ATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGG
27617187 TTTTGTGCCA
Statistics
Matches: 119, Mismatches: 18, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
97 39 0.33
98 80 0.67
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.34
Consensus pattern (97 bp):
ATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGACTACCGATCATGTTACCAAAG
GCTATGTGCCATTATTGTGGGCTTCGTACGAG
Found at i:27617255 original size:27 final size:27
Alignment explanation
Indices: 27617217--27617282 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
27617207 TAAGTTGCTT
* **
27617217 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTAACTC
27617244 TGCCACAATATCTGTATCTGGTAACTC
1 TGCCACAATATCTGTATCTGGTAACTC
*
27617271 TGTCACAATATC
1 TGCCACAATATC
27617283 AGTTTTGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTAACTC
Found at i:27619601 original size:27 final size:26
Alignment explanation
Indices: 27619483--27619822 Score: 269
Period size: 27 Copynumber: 12.7 Consensus size: 26
27619473 TTTAGTTTAC
* * *
27619483 TAAAATTAATGAAATACCC-CCAGTTG
1 TAAAATT-ACGAAATACCCTCGATTTG
* *
27619509 TAAAATTACCAAAGTACCC-CGATTTA
1 TAAAATTACGAAA-TACCCTCGATTTG
* *
27619535 TAAAATTACCAAAATACCGTCGA-TTG
1 TAAAATTA-CGAAATACCCTCGATTTG
*
27619561 TAAAATTACTGAAATACCCTCGATTTA
1 TAAAATTAC-GAAATACCCTCGATTTG
27619588 TAAAATTATCGAAATACCCTC-AGTTTG
1 TAAAATTA-CGAAATACCCTCGA-TTTG
* *
27619615 CAAAATTACTAAAATACCCTCGATTTG
1 TAAAATTAC-GAAATACCCTCGATTTG
* * *
27619642 TAAAATTACTAAAATACCTTCGACTTG
1 TAAAATTAC-GAAATACCCTCGATTTG
* * * *
27619669 TAAAATTACCAAAATACCCCCGGTTTA
1 TAAAATTA-CGAAATACCCTCGATTTG
* ** *
27619696 TAAAATTATTGAAATACTGTTGA-TTG
1 TAAAATTA-CGAAATACCCTCGATTTG
*
27619722 TAAAATTACTGAAATACCCTCAATTTG
1 TAAAATTAC-GAAATACCCTCGATTTG
27619749 TAAAATTACCGAAATACCCT-GAGTTTG
1 TAAAATTA-CGAAATACCCTCGA-TTTG
* * *
27619776 CAAAATTACTGAAATACCATCAATTTG
1 TAAAATTAC-GAAATACCCTCGATTTG
*
27619803 TACAATTACTGAAATACCCT
1 TAAAATTAC-GAAATACCCT
27619823 TGTATGGTAG
Statistics
Matches: 255, Mismatches: 43, Indels: 31
0.78 0.13 0.09
Matches are distributed among these distances:
25 5 0.02
26 72 0.28
27 173 0.68
28 5 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (26 bp):
TAAAATTACGAAATACCCTCGATTTG
Found at i:27619638 original size:54 final size:54
Alignment explanation
Indices: 27619478--27619847 Score: 317
Period size: 54 Copynumber: 6.9 Consensus size: 54
27619468 AATATTTTAG
* * *
27619478 TTTACTAAAATTAAT-GAAATACCCCCAG-TTGTAAAATTACCAAAGTACCC-CGA
1 TTTA-TAAAATT-ATCGAAATACCCTCAGATTGTAAAATTACTAAAATACCCTCGA
* * * *
27619531 TTTATAAAATTACCAAAATACCGTC-GATTGTAAAATTACTGAAATACCCTCGA
1 TTTATAAAATTATCGAAATACCCTCAGATTGTAAAATTACTAAAATACCCTCGA
* *
27619584 TTTATAAAATTATCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTCGA
1 TTTATAAAATTATCGAAATACCCTCAGATTGTAAAATTACTAAAATACCCTCGA
* * * * * *
27619638 TTTGTAAAATTA-CTAAAATACCTTC-GACTTGTAAAATTACCAAAATACCCCCGG
1 TTTATAAAATTATC-GAAATACCCTCAGA-TTGTAAAATTACTAAAATACCCTCGA
* ** * * *
27619692 TTTATAAAATTATTGAAATACTGT-TGATTGTAAAATTACTGAAATACCCTCAA
1 TTTATAAAATTATCGAAATACCCTCAGATTGTAAAATTACTAAAATACCCTCGA
* * * * * * * *
27619745 TTTGTAAAATTACCGAAATACCCTGAGTTTGCAAAATTACTGAAATACCATCAA
1 TTTATAAAATTATCGAAATACCCTCAGATTGTAAAATTACTAAAATACCCTCGA
* * * * *
27619799 TTTGTACAATTA-CTGAAATACCCT-TGTATGGTAGAATTACTAAAATACC
1 TTTATAAAATTATC-GAAATACCCTCAG-ATTGTAAAATTACTAAAATACC
27619848 ACTATAGGGT
Statistics
Matches: 259, Mismatches: 47, Indels: 21
0.79 0.14 0.06
Matches are distributed among these distances:
51 2 0.01
52 34 0.13
53 73 0.28
54 150 0.58
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (54 bp):
TTTATAAAATTATCGAAATACCCTCAGATTGTAAAATTACTAAAATACCCTCGA
Found at i:27619755 original size:161 final size:160
Alignment explanation
Indices: 27619506--27619820 Score: 477
Period size: 161 Copynumber: 2.0 Consensus size: 160
27619496 ATACCCCCAG
*
27619506 TTGTAAAATTACCAAAGTACCCCGATTTATAAAATTACCAAAATACCGTCGATTGTAAAATTACT
1 TTGTAAAATTACCAAAATACCCCGATTTATAAAATTACCAAAATACCGTCGATTGTAAAATTACT
* * *
27619571 GAAATACCCTCGATTTATAAAATTATCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTC
66 GAAATACCCTCAATTTATAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCATC
*
27619636 GATTTGTAAAATTACTAAAATACCTTCGAC
131 AATTTGTAAAATTACTAAAATACCTTCGAC
* *** * *
27619666 TTGTAAAATTACCAAAATACCCCCGGTTTATAAAATTATTGAAATACTGTTGATTGTAAAATTAC
1 TTGTAAAATTACCAAAATA-CCCCGATTTATAAAATTACCAAAATACCGTCGATTGTAAAATTAC
* * *
27619731 TGAAATACCCTCAATTTGTAAAATTACCGAAATACCCTGAGTTTGCAAAATTACTGAAATACCAT
65 TGAAATACCCTCAATTTATAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCAT
* *
27619796 CAATTTGTACAATTACTGAAATACC
130 CAATTTGTAAAATTACTAAAATACC
27619821 CTTGTATGGT
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
160 18 0.13
161 120 0.87
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (160 bp):
TTGTAAAATTACCAAAATACCCCGATTTATAAAATTACCAAAATACCGTCGATTGTAAAATTACT
GAAATACCCTCAATTTATAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCATC
AATTTGTAAAATTACTAAAATACCTTCGAC
Found at i:27619836 original size:27 final size:27
Alignment explanation
Indices: 27619806--27620268 Score: 493
Period size: 27 Copynumber: 17.2 Consensus size: 27
27619796 CAATTTGTAC
* *
27619806 AATTACTGAAATACCCTTGTATGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
27619833 AATTACTAAAATACCACTATAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
27619860 AATTA-TAGAAATACCCTTGTAGTGCAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
** ** *
27619887 AGCTACCAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
27619914 AAATACCGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
27619941 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
27619968 AATTACTGAAACACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
27619995 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
27620022 AAATACCGAAATTCCTCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
27620049 AATTACTAAAATATCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
27620076 AATTA-TCAAAATACCCCTGTAGGATAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
27620103 AATTACCGAAATACCCCTGTACGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
27620130 AATTACCAAAATACCCTTGTA-GGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
27620156 AATTATTGAAATACCCCTGTATGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
27620183 AATTACTGAAATACCCCTATAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
*
27620210 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
27620237 AATTACTGAAATA-CCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
27620263 AATTAC
1 AATTAC
27620269 CGGGATAACC
Statistics
Matches: 364, Mismatches: 67, Indels: 11
0.82 0.15 0.02
Matches are distributed among these distances:
26 43 0.12
27 321 0.88
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:27619846 original size:134 final size:134
Alignment explanation
Indices: 27619535--27619821 Score: 319
Period size: 134 Copynumber: 2.1 Consensus size: 134
27619525 CCCCGATTTA
** * * ** * *
27619535 TAAAATTACCAAAATACCGTCGATTG-TAAAATTACTGAAATACCCTCGATTTATAAAATTATCG
1 TAAAATTACCAAAATACCCCCGGTTGATAAAATTACTAAAATACTGTTGA-TTGTAAAATTATCG
* * * * *
27619599 AAATACCCTCAGTTTGCAAAATTACTAAAATACCCTCGATTTGTAAAATTACTAAAATACCTTCG
65 AAATACCCTCAATTTGCAAAATTACCAAAATACCCTCGATTTGCAAAATTACTAAAATACCATCA
27619664 ACTTG
130 ACTTG
* * *
27619669 TAAAATTACCAAAATACCCCCGGTTTATAAAATTATTGAAATACTGTTGATTGTAAAATTA-CTG
1 TAAAATTACCAAAATACCCCCGGTTGATAAAATTACTAAAATACTGTTGATTGTAAAATTATC-G
* * *
27619733 AAATACCCTCAATTTGTAAAATTACCGAAATACCCT-GAGTTTGCAAAATTACTGAAATACCATC
65 AAATACCCTCAATTTGCAAAATTACCAAAATACCCTCGA-TTTGCAAAATTACTAAAATACCATC
*
27619797 AATTTG
129 AACTTG
* **
27619803 TACAATTACTGAAATACCC
1 TAAAATTACCAAAATACCC
27619822 TTGTATGGTA
Statistics
Matches: 129, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
133 3 0.02
134 107 0.83
135 19 0.15
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (134 bp):
TAAAATTACCAAAATACCCCCGGTTGATAAAATTACTAAAATACTGTTGATTGTAAAATTATCGA
AATACCCTCAATTTGCAAAATTACCAAAATACCCTCGATTTGCAAAATTACTAAAATACCATCAA
CTTG
Found at i:27619863 original size:161 final size:160
Alignment explanation
Indices: 27619508--27619874 Score: 440
Period size: 161 Copynumber: 2.3 Consensus size: 160
27619498 ACCCCCAGTT
* * *
27619508 GTAAAATTACCAAAGTACCC-CGATTTATAAAATTACCA-AAATACCGTCGATTGTAAAATTACT
1 GTAAAATTACCAAAATACCCACG-TATATAAAATTA-TAGAAATACCGTCGATTGTAAAATTACT
* * *
27619571 GAAATACCCTCGATTTATAAAATTATCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTC
64 GAAATACCCTCAATTTATAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCATC
* *
27619636 GATTTGTAAAATTACTAAAATACCTTCGACTT
129 AATTTGTAAAATTACTAAAATACCTTCGACTG
* * * * *
27619668 GTAAAATTACCAAAATACCCCCGGTTTATAAAATTATTGAAATACTGTTGATTGTAAAATTACTG
1 GTAAAATTACCAAAATACCCAC-GTATATAAAATTATAGAAATACCGTCGATTGTAAAATTACTG
* * *
27619733 AAATACCCTCAATTTGTAAAATTACCGAAATACCCTGAGTTTGCAAAATTACTGAAATACCATCA
65 AAATACCCTCAATTTATAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCATCA
* *
27619798 ATTTGTACAATTACTGAAATACCCTT-GTA-TG
130 ATTTGTAAAATTACTAAAATA-CCTTCG-ACTG
* *
27619829 GTAGAATTACTAAAATA-CCAC-TATAGGGTAAAATTATAGAAATACC
1 GTAAAATTACCAAAATACCCACGTATA---TAAAATTATAGAAATACC
27619875 CTTGTAGTGC
Statistics
Matches: 178, Mismatches: 21, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
158 3 0.02
160 22 0.12
161 147 0.83
162 6 0.03
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (160 bp):
GTAAAATTACCAAAATACCCACGTATATAAAATTATAGAAATACCGTCGATTGTAAAATTACTGA
AATACCCTCAATTTATAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCATCAA
TTTGTAAAATTACTAAAATACCTTCGACTG
Found at i:27620558 original size:27 final size:26
Alignment explanation
Indices: 27620520--27620602 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
27620510 TGAAGGAAGC
27620520 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
* *
27620547 GTTCTAGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
27620573 GTATCTGGTGACTTTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
27620600 GTT
1 GTT
27620603 GACCGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:27620771 original size:20 final size:20
Alignment explanation
Indices: 27620724--27620771 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
27620714 CGAAGGCTGT
* *
27620724 GTACCGTTATTGTGGGCTTC
1 GTACCGATATTGTAGGCTTC
*
27620744 GTATCGATATTGTAGGCTTC
1 GTACCGATATTGTAGGCTTC
*
27620764 GTGCCGAT
1 GTACCGAT
27620772 TATAGACCCG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.19, G:0.29, T:0.38
Consensus pattern (20 bp):
GTACCGATATTGTAGGCTTC
Found at i:27620783 original size:98 final size:98
Alignment explanation
Indices: 27620653--27620889 Score: 384
Period size: 98 Copynumber: 2.4 Consensus size: 98
27620643 TGTGTGCTGT
* * * * *
27620653 TATTGTAGGCTTTGTGCCGACTATAGACCCGTTATTAATGGCTGAGTACCGGTCATGTTATCGAA
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTACCGATCATGTTACCGAA
*
27620718 GGCTGTGTACCGTTATTGTGGGCTTCGTATCGA
66 GGCTGTGTACCATTATTGTGGGCTTCGTATCGA
*
27620751 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTCTCAATGGCTGAGTACCGATCATGTTACCGAA
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTACCGATCATGTTACCGAA
*
27620816 GGCTGTGTGCCATTATTGTGGGCTTCGTATCGA
66 GGCTGTGTACCATTATTGTGGGCTTCGTATCGA
* *
27620849 TATTGTGGGCTTCGTGCCGATTATAGACCCGTTATCGATGG
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGG
27620890 TTTTGTGCCA
Statistics
Matches: 128, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 128 1.00
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.34
Consensus pattern (98 bp):
TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTACCGATCATGTTACCGAA
GGCTGTGTACCATTATTGTGGGCTTCGTATCGA
Found at i:27620869 original size:20 final size:20
Alignment explanation
Indices: 27620829--27620869 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
27620819 TGTGTGCCAT
*
27620829 TATTGTGGGCTTCGTATCGA
1 TATTGTGGGCTTCGTACCGA
*
27620849 TATTGTGGGCTTCGTGCCGA
1 TATTGTGGGCTTCGTACCGA
27620869 T
1 T
27620870 TATAGACCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.17, G:0.32, T:0.39
Consensus pattern (20 bp):
TATTGTGGGCTTCGTACCGA
Found at i:27621973 original size:56 final size:56
Alignment explanation
Indices: 27621911--27622023 Score: 156
Period size: 56 Copynumber: 2.0 Consensus size: 56
27621901 GGTAACACTG
* * *
27621911 CTAGTCGAGGTAGATCGCAAAAAAATTC-GGTAAGTGGAGCGAGCAGTAAGAATGAC
1 CTAGTCGAAGTAGATCACAAAAAAATTCGGGT-AGTAGAGCGAGCAGTAAGAATGAC
* * *
27621967 CTAGTCGAAGTAGATCATAAAATATTTCGGGTAGTAGAGCGAGCAGTAAGAATGAC
1 CTAGTCGAAGTAGATCACAAAAAAATTCGGGTAGTAGAGCGAGCAGTAAGAATGAC
27622023 C
1 C
27622024 CTAAAGAGTC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
56 47 0.94
57 3 0.06
ACGTcount: A:0.37, C:0.14, G:0.28, T:0.20
Consensus pattern (56 bp):
CTAGTCGAAGTAGATCACAAAAAAATTCGGGTAGTAGAGCGAGCAGTAAGAATGAC
Found at i:27626318 original size:27 final size:28
Alignment explanation
Indices: 27626288--27626357 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
27626278 ATAATAAGTC
*
27626288 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
27626315 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
27626343 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27626358 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:27634241 original size:27 final size:28
Alignment explanation
Indices: 27634211--27634280 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
27634201 ATAATAAGTC
*
27634211 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
27634238 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
27634266 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27634281 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:27643184 original size:24 final size:24
Alignment explanation
Indices: 27643157--27643249 Score: 141
Period size: 24 Copynumber: 3.9 Consensus size: 24
27643147 AAGGCTGTCA
27643157 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
27643181 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
27643205 GGAGAGGATTTAGGAGATGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
*
27643229 GGAGAAGATTTAAGAGCTGAT
1 GGAGAAGATTTAGGAGCTGAT
27643250 CGAGGAGTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.38, C:0.03, G:0.38, T:0.22
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:27644950 original size:33 final size:34
Alignment explanation
Indices: 27644873--27644953 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 34
27644863 TATGGGCCAT
*
27644873 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
27644907 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
27644940 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
27644954 GGGCTTAGGC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 13 0.34
33 14 0.37
34 11 0.29
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:27644958 original size:32 final size:31
Alignment explanation
Indices: 27644873--27644963 Score: 74
Period size: 32 Copynumber: 2.8 Consensus size: 31
27644863 TATGGGCCAT
*
27644873 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAAT---GGGCTAAGGCCCAGTTC
* * * **
27644907 AATGTAATCTGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCTAAGGCCCAGT-TC
*
27644940 ACTGTTATCTGAATGGGCTTAGGC
1 ACTGTTATCTGAATGGGCTAAGGC
27644964 TTGATGGGCT
Statistics
Matches: 44, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
32 23 0.52
33 10 0.23
34 9 0.20
35 2 0.05
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (31 bp):
ACTGTTATCTGAATGGGCTAAGGCCCAGTTC
Found at i:27646463 original size:303 final size:303
Alignment explanation
Indices: 27645916--27646520 Score: 1210
Period size: 303 Copynumber: 2.0 Consensus size: 303
27645906 GGGCGTTACA
27645916 ATTATAGCCCCTTAAAGAAATTTCGTCCTCGAAATTTCCAACTATCTGAACAAGCGCTTAGCTCA
1 ATTATAGCCCCTTAAAGAAATTTCGTCCTCGAAATTTCCAACTATCTGAACAAGCGCTTAGCTCA
27645981 ATCTACACCACTATGCTCCCATTGCGCACTCTAGTTCCAAACTACACGAATACACTTTTAACTTA
66 ATCTACACCACTATGCTCCCATTGCGCACTCTAGTTCCAAACTACACGAATACACTTTTAACTTA
27646046 ATCTCAAAATCTCTCACACCCAACCAAAACATCTAACCACAGAAGCAAACAGATATTTACCACAC
131 ATCTCAAAATCTCTCACACCCAACCAAAACATCTAACCACAGAAGCAAACAGATATTTACCACAC
27646111 ATGCCTACAATTTCTATATTCAAACATCACATCCAAACAAAACACACTTGACTTAAAAGGAACTA
196 ATGCCTACAATTTCTATATTCAAACATCACATCCAAACAAAACACACTTGACTTAAAAGGAACTA
27646176 TGATTCCTCTTCTTGCTGCACTCCAAGTGCCTAGCCTGAAGTT
261 TGATTCCTCTTCTTGCTGCACTCCAAGTGCCTAGCCTGAAGTT
27646219 ATTATAGCCCCTTAAAGAAATTTCGTCCTCGAAATTTCCAACTATCTGAACAAGCGCTTAGCTCA
1 ATTATAGCCCCTTAAAGAAATTTCGTCCTCGAAATTTCCAACTATCTGAACAAGCGCTTAGCTCA
27646284 ATCTACACCACTATGCTCCCATTGCGCACTCTAGTTCCAAACTACACGAATACACTTTTAACTTA
66 ATCTACACCACTATGCTCCCATTGCGCACTCTAGTTCCAAACTACACGAATACACTTTTAACTTA
27646349 ATCTCAAAATCTCTCACACCCAACCAAAACATCTAACCACAGAAGCAAACAGATATTTACCACAC
131 ATCTCAAAATCTCTCACACCCAACCAAAACATCTAACCACAGAAGCAAACAGATATTTACCACAC
27646414 ATGCCTACAATTTCTATATTCAAACATCACATCCAAACAAAACACACTTGACTTAAAAGGAACTA
196 ATGCCTACAATTTCTATATTCAAACATCACATCCAAACAAAACACACTTGACTTAAAAGGAACTA
27646479 TGATTCCTCTTCTTGCTGCACTCCAAGTGCCTAGCCTGAAGT
261 TGATTCCTCTTCTTGCTGCACTCCAAGTGCCTAGCCTGAAGT
27646521 GTTTCACCAT
Statistics
Matches: 302, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
303 302 1.00
ACGTcount: A:0.35, C:0.29, G:0.09, T:0.26
Consensus pattern (303 bp):
ATTATAGCCCCTTAAAGAAATTTCGTCCTCGAAATTTCCAACTATCTGAACAAGCGCTTAGCTCA
ATCTACACCACTATGCTCCCATTGCGCACTCTAGTTCCAAACTACACGAATACACTTTTAACTTA
ATCTCAAAATCTCTCACACCCAACCAAAACATCTAACCACAGAAGCAAACAGATATTTACCACAC
ATGCCTACAATTTCTATATTCAAACATCACATCCAAACAAAACACACTTGACTTAAAAGGAACTA
TGATTCCTCTTCTTGCTGCACTCCAAGTGCCTAGCCTGAAGTT
Found at i:27648182 original size:27 final size:27
Alignment explanation
Indices: 27648141--27648286 Score: 98
Period size: 27 Copynumber: 5.4 Consensus size: 27
27648131 GGGCAAAACA
* *
27648141 GTCATTTTACCCTACAGGGGTATGTCG
1 GTCATTTTACACTACAAGGGTATGTCG
* *
27648168 GTCATTTTACACTACAAGGGTATTTTG
1 GTCATTTTACACTACAAGGGTATGTCG
* * * *
27648195 ATAATTTTACACTACAAGGTTATTTCG
1 GTCATTTTACACTACAAGGGTATGTCG
* * * * *
27648222 ATAATTTTACA-AATCAAGGGTATTTTG
1 GTCATTTTACACTA-CAAGGGTATGTCG
* * * *
27648249 GTAATTTTACA-AATCGAGGGTATTTCG
1 GTCATTTTACACTA-CAAGGGTATGTCG
*
27648276 GTAATTTTACA
1 GTCATTTTACA
27648287 AATTGGGGGT
Statistics
Matches: 104, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 103 0.99
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:27648287 original size:27 final size:27
Alignment explanation
Indices: 27648158--27648632 Score: 360
Period size: 27 Copynumber: 17.6 Consensus size: 27
27648148 TACCCTACAG
* * * *
27648158 GGGTATGTCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* * * *
27648185 GGGTATTTTGATAATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* * *
27648212 GGTTATTTCGATAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
27648239 GGGTATTTTGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
27648266 GGGTATTTCGGTAATTTTACAAATTGG
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
27648293 GGGTATTTTGGTAATTTTACAAATTGG
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
27648320 GGGTACTTCAGTAATTTTACAAATAG-
1 GGGTATTTCGGTAATTTTACAAATCGA
** * *
27648346 GGGTATTTTTGTAATTTTGCAAAT-TA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
27648372 GAGGTATTTTGGTAATTTTACAAAGCAA
1 G-GGTATTTCGGTAATTTTACAAATCGA
* **
27648400 GGGTACTTCAATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
27648427 GGGTATTTCGATAATTTTACAAA-CTA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
27648453 GAGGTACTTCGATAATTTTACAAATCG-
1 G-GGTATTTCGGTAATTTTACAAATCGA
* ** *
27648480 GAGGTAATTCAATAATTTTACAAA-CCA
1 G-GGTATTTCGGTAATTTTACAAATCGA
* * *
27648507 GGGGTACTTCGATAATTTTACAAA-CCA
1 -GGGTATTTCGGTAATTTTACAAATCGA
* * *
27648534 GGGGTACTTCGATAATTTTACAAATCGG
1 -GGGTATTTCGGTAATTTTACAAATCGA
*
27648562 GGGTGTTTCGGTAATTTTAC-AATCTG-
1 GGGTATTTCGGTAATTTTACAAATC-GA
*
27648588 GGGATACTTT-GGTAATTTTAAAAATCGA
1 GGG-TA-TTTCGGTAATTTTACAAATCGA
*
27648616 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
27648633 CTCCTTATTA
Statistics
Matches: 381, Mismatches: 52, Indels: 30
0.82 0.11 0.06
Matches are distributed among these distances:
26 35 0.09
27 329 0.86
28 17 0.04
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:27648985 original size:28 final size:28
Alignment explanation
Indices: 27648949--27649005 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
27648939 TGGCCTCTTT
* *
27648949 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* *
27648977 AGGCCCAATCACATTCATATGGGCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
27649005 A
1 A
27649006 AGACGAACTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.26, C:0.35, G:0.18, T:0.21
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:27654115 original size:17 final size:19
Alignment explanation
Indices: 27654073--27654116 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
27654063 ATGAAATTTT
*
27654073 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
27654092 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
27654110 AA-TATTA
1 AATTATTA
27654117 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:27655572 original size:13 final size:13
Alignment explanation
Indices: 27655554--27655582 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
27655544 AAAGGGATCT
27655554 CAAGCAGTCGTCG
1 CAAGCAGTCGTCG
27655567 CAAGCAGTCGTCG
1 CAAGCAGTCGTCG
27655580 CAA
1 CAA
27655583 ATGCCGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.31, G:0.28, T:0.14
Consensus pattern (13 bp):
CAAGCAGTCGTCG
Found at i:27664870 original size:40 final size:39
Alignment explanation
Indices: 27664705--27664888 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
27664695 AAATTGAATG
* * *
27664705 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
27664745 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
27664785 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
27664825 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
27664864 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
27664889 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:27664913 original size:80 final size:81
Alignment explanation
Indices: 27664745--27664933 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
27664735 GCTGGAAATT
* * * *
27664745 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
27664810 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
27664826 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
27664889 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
27664905 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
27664934 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:27668749 original size:42 final size:43
Alignment explanation
Indices: 27668700--27668814 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
27668690 TAAGTGATAT
*
27668700 CATGTAAGACCATGTCTGGGACGTTGGCATC-ATATTTGATTT
1 CATGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTA
** * * *
27668742 TGTGTAAGACCCTATTTGGGACAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGATTA
*
27668785 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CATGTAAGACCATGTCTGGGACGTTGGCAT
27668815 TGTATGACTT
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
42 25 0.43
43 33 0.57
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:27673925 original size:43 final size:44
Alignment explanation
Indices: 27673876--27674026 Score: 182
Period size: 43 Copynumber: 3.5 Consensus size: 44
27673866 GGTTATCGAG
*
27673876 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
27673920 -TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *** * *
27673962 ATATGATTTTGTGTAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
27674005 ATGTAATAACATGTAATACCAT
1 ATGTGATTACATGTAAGACCAT
27674027 ATCTTGGATA
Statistics
Matches: 88, Mismatches: 17, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 1 0.01
43 87 0.99
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:27687115 original size:28 final size:28
Alignment explanation
Indices: 27687084--27687167 Score: 80
Period size: 29 Copynumber: 3.0 Consensus size: 28
27687074 AGCCCACTTG
*
27687084 GCCCAATC-TCTTTCATATGACCCATTAA
1 GCCCAATCATATTT-ATATGACCCATTAA
* * *
27687112 GCCCAATCATATTTATGTGGCCCATTAG
1 GCCCAATCATATTTATATGACCCATTAA
* * *
27687140 GCCCAAATCACATTTATGTGGCCCATTA
1 GCCC-AATCATATTTATATGACCCATTA
27687168 GGCCTGAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
28 23 0.47
29 26 0.53
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (28 bp):
GCCCAATCATATTTATATGACCCATTAA
Found at i:27687184 original size:29 final size:29
Alignment explanation
Indices: 27687104--27687171 Score: 111
Period size: 29 Copynumber: 2.4 Consensus size: 29
27687094 TTTCATATGA
* *
27687104 CCCATTAAGCCC-AATCATATTTATGTGG
1 CCCATTAGGCCCAAATCACATTTATGTGG
27687132 CCCATTAGGCCCAAATCACATTTATGTGG
1 CCCATTAGGCCCAAATCACATTTATGTGG
27687161 CCCATTAGGCC
1 CCCATTAGGCC
27687172 TGAATTACAT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
28 11 0.30
29 26 0.70
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
CCCATTAGGCCCAAATCACATTTATGTGG
Done.