Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 114 of 378
Found at i:31824663 original size:40 final size:40
Alignment explanation
Indices: 31824604--31824774 Score: 186
Period size: 40 Copynumber: 4.3 Consensus size: 40
31824594 CATTTGAATG
* * *
31824604 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATT
* *
31824644 ATATCCGGGCTAAGACCCGAAGGCATTCGT-CGAATTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTGATT
* **
31824683 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATT
* * * ** *
31824723 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATT
31824763 ATATCC-GGCTAA
1 ATATCCGGGCTAA
31824775 ATTCCGAAGA
Statistics
Matches: 107, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
39 40 0.37
40 67 0.63
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATT
Found at i:31827532 original size:2 final size:2
Alignment explanation
Indices: 31827527--31827574 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
31827517 GTGAAAGTCG
31827527 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
31827569 T- TA TA T
1 TA TA TA T
31827575 TCTGAAAGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:31828094 original size:39 final size:39
Alignment explanation
Indices: 31828040--31828163 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
31828030 ATTTGATGTG
31828040 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
31828079 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
31828118 TATTCAGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
31828157 TGTCCGG
1 TATCCGG
31828164 GCTAAAGTCC
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:31828177 original size:39 final size:39
Alignment explanation
Indices: 31828040--31828199 Score: 187
Period size: 39 Copynumber: 4.1 Consensus size: 39
31828030 ATTTGATGTG
* *
31828040 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* *
31828079 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* * *
31828118 TATTCAGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* * * * * *
31828157 TGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGGTATTA
1 TATCCGGACTTAAGGT-CCGCAGGCTACGTGCTGGAATTA
31828196 TATC
1 TATC
31828200 GGGTTTAAAT
Statistics
Matches: 105, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 5 0.05
39 100 0.95
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
Found at i:31831758 original size:42 final size:42
Alignment explanation
Indices: 31831711--31831793 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
31831701 AGACTATGTG
* * * *
31831711 TAAGACCGTATATGGGATATGGCATCTATATGAGACTTCGTA
1 TAAGACCATATATGGAATATGACATCGATATGAGACTTCGTA
31831753 TAAGACCATATATGGAATATGACATCGATATGAGACTTCGT
1 TAAGACCATATATGGAATATGACATCGATATGAGACTTCGT
31831794 GTAAAACTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (42 bp):
TAAGACCATATATGGAATATGACATCGATATGAGACTTCGTA
Found at i:31837433 original size:27 final size:26
Alignment explanation
Indices: 31837389--31837440 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
31837379 CTCGCTGCAA
*
31837389 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
31837416 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
31837441 GCAGCCTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:31844800 original size:27 final size:26
Alignment explanation
Indices: 31844748--31844807 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
31844738 CGCCATATAT
*
31844748 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
31844774 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
31844801 ATATCTG
1 ATATCTG
31844808 CCAGCCTCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:31848327 original size:45 final size:45
Alignment explanation
Indices: 31848276--31848370 Score: 183
Period size: 45 Copynumber: 2.1 Consensus size: 45
31848266 TAAATCGAGC
31848276 TGTAAATATTTTTATAAATATTTACAGAGTGTAACTAAGGTGGTA
1 TGTAAATATTTTTATAAATATTTACAGAGTGTAACTAAGGTGGTA
31848321 TGTAAATATTTTTATAAATATTTACAGAGTGTAACTAAGGTGGTA
1 TGTAAATATTTTTATAAATATTTACAGAGTGTAACTAAGGTGGTA
31848366 T-TAAA
1 TGTAAA
31848371 GTTTCATTGA
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 4 0.08
45 46 0.92
ACGTcount: A:0.39, C:0.04, G:0.17, T:0.40
Consensus pattern (45 bp):
TGTAAATATTTTTATAAATATTTACAGAGTGTAACTAAGGTGGTA
Found at i:31849327 original size:2 final size:2
Alignment explanation
Indices: 31849320--31849347 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
31849310 AAATGAATCG
31849320 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
31849348 GTTATTATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:31855679 original size:46 final size:45
Alignment explanation
Indices: 31855625--31855789 Score: 147
Period size: 46 Copynumber: 3.6 Consensus size: 45
31855615 CGCAGCCGAT
*
31855625 GCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAG-GCTGAA
1 GCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTC-AGTGCTGAA
* * *
31855671 GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAGTGCTGAT
1 GCATGTCCCAGACATGTCTTACACTGGC-TTCGTCTCAGTGCTGAA
* * * * *
31855717 GCCATGTTCCAGACTTGGTCTTACACTGGC-TC-TCATAATGTGGCCGAT
1 G-CATGTCCCAGACAT-GTCTTACACTGGCTTCGTC-TCA-GT-GCTGAA
*
31855765 CCATGTCCCAGACATGTCTTACACT
1 GCATGTCCCAGACATGTCTTACACT
31855790 AGCTCACACA
Statistics
Matches: 100, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
45 4 0.04
46 52 0.52
47 27 0.27
48 17 0.17
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCAGTGCTGAA
Found at i:31858231 original size:9 final size:9
Alignment explanation
Indices: 31858219--31858275 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
31858209 TTTGATAAAC
31858219 ATGATATGT
1 ATGATATGT
*
31858228 ATGATATGCAC
1 ATGATATG--T
*
31858239 ATGACATGT
1 ATGATATGT
*
31858248 ATGATATGCAC
1 ATGATATG--T
31858259 ATGATATGT
1 ATGATATGT
31858268 ATGATATG
1 ATGATATG
31858276 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:31858242 original size:20 final size:20
Alignment explanation
Indices: 31858217--31858279 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
31858207 ATTTTGATAA
31858217 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
31858237 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
31858257 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
31858277 ACA
1 ACA
31858280 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:31858407 original size:47 final size:47
Alignment explanation
Indices: 31858334--31858431 Score: 153
Period size: 47 Copynumber: 2.1 Consensus size: 47
31858324 AGGAAGTGCA
*
31858334 AAAGGGCTTATGCCACAGTTA-TTAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCACAGTTACTAAAAAGGGCTT-TGCCCCAGTTATT
*
31858381 AAAGGGCTTATGCCCCAGTTACTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCACAGTTACT-AAAAAGGGCTTTGCCCCAGTTATT
31858429 AAA
1 AAA
31858432 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
47 20 0.43
48 17 0.36
49 10 0.21
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (47 bp):
AAAGGGCTTATGCCACAGTTACTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:31858448 original size:25 final size:24
Alignment explanation
Indices: 31858333--31858452 Score: 156
Period size: 24 Copynumber: 5.0 Consensus size: 24
31858323 GAGGAAGTGC
*
31858333 AAAAGGGCTTATGCCACAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
31858357 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
31858381 -AAAGGGCTTATGCCCCAGTTACTAA
1 AAAAGGGCTTATGCCCCAGTTA-T-T
31858406 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
31858429 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
31858453 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 4, Indels: 11
0.85 0.04 0.11
Matches are distributed among these distances:
23 27 0.31
24 31 0.36
25 19 0.22
26 9 0.10
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:31858698 original size:30 final size:31
Alignment explanation
Indices: 31858645--31858707 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
31858635 CGTTTACAGT
31858645 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
31858676 AAAGGCTTCGG-CCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
31858706 AA
1 AA
31858708 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 18 0.62
31 11 0.38
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:31866200 original size:25 final size:25
Alignment explanation
Indices: 31866171--31866218 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
31866161 TTATAATATG
* * *
31866171 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
31866196 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
31866219 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:31866269 original size:9 final size:9
Alignment explanation
Indices: 31866257--31866313 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
31866247 TTTGATAAAC
31866257 ATGATATGT
1 ATGATATGT
*
31866266 ATGATATGCAC
1 ATGATATG--T
*
31866277 ATGACATGT
1 ATGATATGT
*
31866286 ATGATATGCAC
1 ATGATATG--T
31866297 ATGATATGT
1 ATGATATGT
31866306 ATGATATG
1 ATGATATG
31866314 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:31866280 original size:20 final size:20
Alignment explanation
Indices: 31866255--31866317 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
31866245 ATTTTGATAA
31866255 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
31866275 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
31866295 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
31866315 ACA
1 ACA
31866318 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:31866398 original size:24 final size:24
Alignment explanation
Indices: 31866371--31866465 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
31866361 TAGGAAGTGC
*
31866371 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
31866395 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
31866419 AAAAAGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
31866442 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
31866466 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
23 18 0.28
24 38 0.59
25 8 0.12
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:31866693 original size:31 final size:31
Alignment explanation
Indices: 31866658--31866721 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
31866648 CGTTTACAGT
31866658 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
31866689 AAAGGCTTCGGCCCAGTGCTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
31866720 AA
1 AA
31866722 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:31871321 original size:21 final size:21
Alignment explanation
Indices: 31871291--31871367 Score: 106
Period size: 21 Copynumber: 3.8 Consensus size: 21
31871281 CAACGTCACA
31871291 GAAT-GGAAGAAGCTACTTGG
1 GAATCGGAAGAAGCTACTTGG
*
31871311 GAATCAGAAG-A-CTACTTGG
1 GAATCGGAAGAAGCTACTTGG
*
31871330 GAATTGGAAGAAGCTACTTGG
1 GAATCGGAAGAAGCTACTTGG
*
31871351 GAATCGGAAGAATCTAC
1 GAATCGGAAGAAGCTAC
31871368 GAAAGTGCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.33
20 6 0.12
21 27 0.55
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (21 bp):
GAATCGGAAGAAGCTACTTGG
Found at i:31874683 original size:17 final size:18
Alignment explanation
Indices: 31874663--31874700 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
31874653 TTCATCTTTA
31874663 TTTTTATTTTT-TATTATT
1 TTTTTATTTTTCTATT-TT
31874681 TTTGTTATTTTTCTATTTT
1 TTT-TTATTTTTCTATTTT
31874700 T
1 T
31874701 CTTATTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.17
19 11 0.61
20 4 0.22
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTTATTTTTCTATTTT
Found at i:31882202 original size:51 final size:51
Alignment explanation
Indices: 31882116--31882221 Score: 142
Period size: 51 Copynumber: 2.1 Consensus size: 51
31882106 TCGAACCTAC
** *
31882116 TCTAACAAAAGTTTAAAACCTTCATATACTCTCTTTTATAAAATCATGGTT
1 TCTAACAAAAGTTTAAAACCTTCATATACAATCTTTTATAAAATCATGATT
* * *
31882167 TCTAACAATAGTTTAAAACCTTCA-AGTACAATCTTTTTTAAAATCGTGATT
1 TCTAACAAAAGTTTAAAACCTTCATA-TACAATCTTTTATAAAATCATGATT
31882218 TCTA
1 TCTA
31882222 TTGTTAACTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
50 1 0.02
51 47 0.98
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.40
Consensus pattern (51 bp):
TCTAACAAAAGTTTAAAACCTTCATATACAATCTTTTATAAAATCATGATT
Found at i:31888672 original size:50 final size:50
Alignment explanation
Indices: 31888597--31888880 Score: 300
Period size: 50 Copynumber: 5.8 Consensus size: 50
31888587 TGATGCTAGG
* *
31888597 GATATATGTGGGCTAGTGTAAGACCATGTCTTGGG-CATGGCATCGGCCTT
1 GATATATGAGAGCTAGTGTAAGACCATGTC-TGGGACATGGCATCGGCCTT
*
31888647 GATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGG-CTT
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
* * *
31888696 GA-A-ATGAG-TC-AGTGTAAGACCATGTCTGGGACATGACATCGGCACCT
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTT
* *
31888743 -ATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
* * * * * **
31888792 GGTATACGAGAGTTAGTGTAAGAGCATGCCTGGGACATGGCATC-AACTT
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
* * * *
31888841 TA-ATGTGTGAGCAAGTGTAAGACCATGT-TCGGGACATGGC
1 GATATATGAGAGCTAGTGTAAGACCATGTCT-GGGACATGGC
31888881 GTTAGCACCT
Statistics
Matches: 196, Mismatches: 29, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
45 30 0.15
46 2 0.01
47 9 0.05
48 35 0.18
49 12 0.06
50 108 0.55
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (50 bp):
GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
Found at i:31888778 original size:95 final size:95
Alignment explanation
Indices: 31888611--31888788 Score: 288
Period size: 95 Copynumber: 1.9 Consensus size: 95
31888601 TATGTGGGCT
* * *
31888611 AGTGTAAGACCATGTCTTGGGCATGGCATCGGCCTTGATATATGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTTGGGCATGACATCGGCCCTGATAGATGAGAGCTAGTGTAAGACCATGT
31888676 CTAGGACATGGCATCGGCTTGAAATGAGTC
66 CTAGGACATGGCATCGGCTTGAAATGAGTC
31888706 AGTGTAAGACCATGTC-TGGGACATGACATCGGCACCT-ATAGATGAGAGCTAGTGTAAGACCAT
1 AGTGTAAGACCATGTCTTGGG-CATGACATCGGC-CCTGATAGATGAGAGCTAGTGTAAGACCAT
*
31888769 GTCTGGGACATGGCATCGGC
64 GTCTAGGACATGGCATCGGC
31888789 CTCGGTATAC
Statistics
Matches: 77, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
94 4 0.05
95 71 0.92
96 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTTGGGCATGACATCGGCCCTGATAGATGAGAGCTAGTGTAAGACCATGT
CTAGGACATGGCATCGGCTTGAAATGAGTC
Found at i:31892859 original size:22 final size:19
Alignment explanation
Indices: 31892815--31892852 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
31892805 GCCAAATGTT
31892815 AATAACATTTATGTGATGA
1 AATAACATTTATGTGATGA
31892834 AATAACATTTATGTGATGA
1 AATAACATTTATGTGATGA
31892853 TTGAATACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.16, T:0.37
Consensus pattern (19 bp):
AATAACATTTATGTGATGA
Found at i:31893142 original size:50 final size:50
Alignment explanation
Indices: 31893064--31893302 Score: 285
Period size: 50 Copynumber: 4.9 Consensus size: 50
31893054 TGATGCTAGG
* *
31893064 GATATATGAGGGCTAGTGTAAGATCATGTCTAGGACATGGCATCAGCCTC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCTC
*
31893114 GATATAGGAGAGCTAGTGTAAGACCATGTCT-GGTACATGGCATCAGCCTC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCAGCCTC
* * *
31893164 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCTT
1 GATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCTC
** * *
31893213 G--ATATGA-TTC-AGTGTAAGACCATGTCTGGGACATGACATCAGCAC-C
1 GATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGC-CTC
* * * *
31893259 GATAGATGAGATCCAGTGTAAGACCATGTCTAGGACATGACATC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATC
31893303 GACTTTGATG
Statistics
Matches: 167, Mismatches: 14, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
45 29 0.17
46 3 0.02
47 7 0.04
48 5 0.03
49 8 0.05
50 113 0.68
51 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (50 bp):
GATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCTC
Found at i:31893268 original size:95 final size:95
Alignment explanation
Indices: 31893064--31893345 Score: 314
Period size: 95 Copynumber: 2.9 Consensus size: 95
31893054 TGATGCTAGG
* * * * *
31893064 GATATATGAGGGCTAGTGTAAGATCATGTCTAGGACATGGCATCAGCCTCGATATAGGAGAGCTA
1 GATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATC-GACTTGATAT--GA-A-CCA
* *
31893129 GTGTAAGACCATGTCTGGTACATGGCATCAGCCTC
61 GTGTAAGACCATGTCTGGGACATGACATCAGCCTC
* * **
31893164 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGATTCAGTGTA
1 GATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGATATGAACCAGTGTA
31893229 AGACCATGTCTGGGACATGACATCAGCAC-C
66 AGACCATGTCTGGGACATGACATCAGC-CTC
* * * * *
31893259 GATAGATGAGATCCAGTGTAAGACCATGTCTAGGACATGACATCGACTTTGATGTGTGAACCAGT
1 GATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGAC-TTGA--TATGAACCAGT
* *
31893324 GTAAGATCAGGTCTGGGACATG
63 GTAAGACCATGTCTGGGACATG
31893346 GCGTCAGTGC
Statistics
Matches: 157, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
95 73 0.46
96 5 0.03
97 2 0.01
98 28 0.18
99 8 0.05
100 41 0.26
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (95 bp):
GATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGATATGAACCAGTGTA
AGACCATGTCTGGGACATGACATCAGCCTC
Found at i:31894610 original size:26 final size:26
Alignment explanation
Indices: 31894574--31894626 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
31894564 CACGAGGCAT
31894574 TACCATACTTAACCACATGCATATAA
1 TACCATACTTAACCACATGCATATAA
31894600 TACCATACTTAACCACATGCATATAA
1 TACCATACTTAACCACATGCATATAA
31894626 T
1 T
31894627 CACTTCCGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.42, C:0.26, G:0.04, T:0.28
Consensus pattern (26 bp):
TACCATACTTAACCACATGCATATAA
Found at i:31895966 original size:47 final size:47
Alignment explanation
Indices: 31895897--31896072 Score: 162
Period size: 47 Copynumber: 3.7 Consensus size: 47
31895887 GTATAATGCT
* *
31895897 GACGCCATGTCCCAAACATGGTCTTACACTGGCTTATCCATCAAGTC
1 GACGCCATGTCCTAGACATGGTCTTACACTGGCTTATCCATCAAGTC
* * ** *
31895944 GACGCCAAGTCCTAGACATGGTCTTACACTGAC-TACTGAGATCGAGGTC
1 GACGCCATGTCCTAGACATGGTCTTACACTGGCTTA-T-CCATC-AAGTC
* **
31895993 GACGCCATGTCCTGGACATGGTCTTACACTGG-TTCATCTC-TCCGTGTC
1 GACGCCATGTCCTAGACATGGTCTTACACTGGCTT-ATC-CAT-CAAGTC
* *
31896041 GATGCCATGTCCTAGA-ATGGACTTACACTGGC
1 GACGCCATGTCCTAGACATGGTCTTACACTGGC
31896073 ACATCTCATA
Statistics
Matches: 104, Mismatches: 17, Indels: 15
0.76 0.12 0.11
Matches are distributed among these distances:
46 2 0.02
47 44 0.42
48 21 0.20
49 36 0.35
50 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (47 bp):
GACGCCATGTCCTAGACATGGTCTTACACTGGCTTATCCATCAAGTC
Found at i:31896066 original size:96 final size:96
Alignment explanation
Indices: 31895897--31896070 Score: 228
Period size: 96 Copynumber: 1.8 Consensus size: 96
31895887 GTATAATGCT
31895897 GACGCCATGTCCCAAACATGGTCTTACACTGGCTTATCCATCAAGTCGACGCCAAGTCCTAGACA
1 GACGCCATGTCCCAAACATGGTCTTACACTGGCTTATCCATCAAGTCGACGCCAAGTCCTAGACA
*
31895962 TGGTCTTACACTGACTACTGAGATCGAGGTC
66 TGGACTTACACTGACTACTGAGATCGAGGTC
*** ** * *
31895993 GACGCCATGTCCTGGACATGGTCTTACACTGG-TTCATCTC-TCCGTGTCGATGCCATGTCCTAG
1 GACGCCATGTCCCAAACATGGTCTTACACTGGCTT-ATC-CAT-CAAGTCGACGCCAAGTCCTAG
31896056 A-ATGGACTTACACTG
63 ACATGGACTTACACTG
31896071 GCACATCTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
95 2 0.03
96 46 0.69
97 19 0.28
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (96 bp):
GACGCCATGTCCCAAACATGGTCTTACACTGGCTTATCCATCAAGTCGACGCCAAGTCCTAGACA
TGGACTTACACTGACTACTGAGATCGAGGTC
Found at i:31902786 original size:30 final size:30
Alignment explanation
Indices: 31902752--31902850 Score: 198
Period size: 30 Copynumber: 3.3 Consensus size: 30
31902742 CATGGGCTGG
31902752 CCGTGTGTCACACACGGCCAAGACACACGC
1 CCGTGTGTCACACACGGCCAAGACACACGC
31902782 CCGTGTGTCACACACGGCCAAGACACACGC
1 CCGTGTGTCACACACGGCCAAGACACACGC
31902812 CCGTGTGTCACACACGGCCAAGACACACGC
1 CCGTGTGTCACACACGGCCAAGACACACGC
31902842 CCGTGTGTC
1 CCGTGTGTC
31902851 TACCCGTGTG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 69 1.00
ACGTcount: A:0.24, C:0.39, G:0.24, T:0.12
Consensus pattern (30 bp):
CCGTGTGTCACACACGGCCAAGACACACGC
Found at i:31902796 original size:17 final size:17
Alignment explanation
Indices: 31902774--31902827 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
31902764 CACGGCCAAG
31902774 ACACACGCCCGTGTGTC
1 ACACACGCCCGTGTGTC
* **
31902791 ACACACGGCC--AAG--
1 ACACACGCCCGTGTGTC
31902804 ACACACGCCCGTGTGTC
1 ACACACGCCCGTGTGTC
31902821 ACACACG
1 ACACACG
31902828 GCCAAGACAC
Statistics
Matches: 27, Mismatches: 6, Indels: 8
0.66 0.15 0.20
Matches are distributed among these distances:
13 9 0.33
15 2 0.07
17 16 0.59
ACGTcount: A:0.26, C:0.41, G:0.22, T:0.11
Consensus pattern (17 bp):
ACACACGCCCGTGTGTC
Found at i:31903749 original size:44 final size:45
Alignment explanation
Indices: 31903685--31903796 Score: 122
Period size: 46 Copynumber: 2.5 Consensus size: 45
31903675 CAATGCCATA
*
31903685 TCCCAAACATGGTCTTACACTA-ACACATCTCAT-A-GCCGATGCATG
1 TCCCAGACAT-GTCTTACACTACACACAT-TC-TGAGGCCGATGCATG
* * *
31903730 TCCCAGACATGTCTTACACTAGCTCACATTCTGAGGCTGATGTATG
1 TCCCAGACATGTCTTACACTA-CACACATTCTGAGGCCGATGCATG
*
31903776 TCCCAGACACGTCTTACACTA
1 TCCCAGACATGTCTTACACTA
31903797 GCATACAAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
44 12 0.21
45 12 0.21
46 34 0.59
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (45 bp):
TCCCAGACATGTCTTACACTACACACATTCTGAGGCCGATGCATG
Found at i:31904683 original size:47 final size:47
Alignment explanation
Indices: 31904632--31904725 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
31904622 AGATGATATC
*
31904632 TTTTTCTCCTTATTTTATTTTTTATTCTAGTCAAAATAGGTCACCAA
1 TTTTTCTCCTTATTTTATTTTTCATTCTAGTCAAAATAGGTCACCAA
31904679 TTTTTCTCCTTATTTTATTTTTCATTCTAGTCAAAATAGGTCACCAA
1 TTTTTCTCCTTATTTTATTTTTCATTCTAGTCAAAATAGGTCACCAA
31904726 CTCACCTAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.26, C:0.18, G:0.06, T:0.50
Consensus pattern (47 bp):
TTTTTCTCCTTATTTTATTTTTCATTCTAGTCAAAATAGGTCACCAA
Found at i:31905760 original size:304 final size:304
Alignment explanation
Indices: 31905211--31905820 Score: 1130
Period size: 304 Copynumber: 2.0 Consensus size: 304
31905201 TGGCATGTAT
*
31905211 AAGGAATTATTTTTTTTTCTTATGATATGTGTTAACATGACTAGCCAAATGTATTGGCCTATATT
1 AAGGAATTATTTTTTTTTCTTATGATATGTGTTAACATGACTAACCAAATGTATTGGCCTATATT
* *
31905276 GAGTTATTTGTATATGGCCATGAAGGGTGGCTCACATTGATTATGGTTTGTGAACCTATCTATCT
66 AAGTTATTTGTATATGGCCATGAAGGGTGGCTCACATTGATTATGGTTTGTGAACCTATATATCT
31905341 ATACTATGTTCTAATGCTTGTGATGTGATTACGCTTGTTGGCCATATATGGTTGGTGTTATGAAA
131 ATACTATGTTCTAATGCTTGTGATGTGATTACGCTTGTTGGCCATATATGGTTGGTGTTATGAAA
*
31905406 TATGTGCATGATGAATGTTTTATGACCAATCTAAATTTTCATGGCCATGAATTAAATGTGTACTA
196 TATGTGCATGATGAATGTTTTATGACCAATCTAAATTGTCATGGCCATGAATTAAATGTGTACTA
*
31905471 TGGAAATAAAGATGTAAAGGATTAAGGGTAAGTTAAAGGCTTGG
261 TGGAAATAAAGATGTAAAGGATTAAGGGTAACTTAAAGGCTTGG
31905515 AAGGAATTATTTTTTTTTCTTATGATATGTGTTAACATGACTAACCAAATGTATTGGCCTATATT
1 AAGGAATTATTTTTTTTTCTTATGATATGTGTTAACATGACTAACCAAATGTATTGGCCTATATT
*
31905580 AAGTTATTTGTATATGGCCATGAAGGGTGGCTCGCATTGATTATGGTTTGTGAACCTATATATCT
66 AAGTTATTTGTATATGGCCATGAAGGGTGGCTCACATTGATTATGGTTTGTGAACCTATATATCT
* * *
31905645 ATGCTATGTTCTAATGCTTGTGATGTGATTATGCTTGTTGGCCATATATGGTTGGTGTTATGATA
131 ATACTATGTTCTAATGCTTGTGATGTGATTACGCTTGTTGGCCATATATGGTTGGTGTTATGAAA
31905710 TATGTGCATGATGAATGTTTTATGACCAATCTAAATTGTCATGGCCATGAATTAAATGTGTACTA
196 TATGTGCATGATGAATGTTTTATGACCAATCTAAATTGTCATGGCCATGAATTAAATGTGTACTA
*
31905775 TGGAAATAAAGATGTGAAGGATTAAGGGTAACTTAAAGGCTTGG
261 TGGAAATAAAGATGTAAAGGATTAAGGGTAACTTAAAGGCTTGG
31905819 AA
1 AA
31905821 AATAGCCTAA
Statistics
Matches: 296, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
304 296 1.00
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (304 bp):
AAGGAATTATTTTTTTTTCTTATGATATGTGTTAACATGACTAACCAAATGTATTGGCCTATATT
AAGTTATTTGTATATGGCCATGAAGGGTGGCTCACATTGATTATGGTTTGTGAACCTATATATCT
ATACTATGTTCTAATGCTTGTGATGTGATTACGCTTGTTGGCCATATATGGTTGGTGTTATGAAA
TATGTGCATGATGAATGTTTTATGACCAATCTAAATTGTCATGGCCATGAATTAAATGTGTACTA
TGGAAATAAAGATGTAAAGGATTAAGGGTAACTTAAAGGCTTGG
Found at i:31911906 original size:23 final size:23
Alignment explanation
Indices: 31911880--31911923 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
31911870 TATATCCATA
* *
31911880 CCAAAATCATGCCAAATCATAAG
1 CCAAAATCATACCAAAACATAAG
*
31911903 CCAAAGTCATACCAAAACATA
1 CCAAAATCATACCAAAACATA
31911924 TGTTTCATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.50, C:0.27, G:0.07, T:0.16
Consensus pattern (23 bp):
CCAAAATCATACCAAAACATAAG
Found at i:31912792 original size:44 final size:42
Alignment explanation
Indices: 31912642--31912810 Score: 148
Period size: 43 Copynumber: 4.0 Consensus size: 42
31912632 AACTCGTACA
* * * *
31912642 ATGCCAA-CTCCTAGATGTGGTCTTACATGTAATCAAATATTG
1 ATGCCAATGTCCTAGACGTGGTCTTACACGAAATCAAATA-TG
* * *
31912684 ATGCCATTGTACC-AGATAG-GGTCTTACATGAAATCAAATATG
1 ATGCCAATGT-CCTAGA-CGTGGTCTTACACGAAATCAAATATG
* * * *
31912726 ATGTCGATGTCCCAGACATGGTCTTACACGTAAATCTAAA-ATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACACG-AAATC-AAATAT-G
*
31912770 ATGCCAATGTCCTAGACGTGGTCTTACACGAAATCACATAT
1 ATGCCAATGTCCTAGACGTGGTCTTACACGAAATCAAATAT
31912811 CGAAATCCTA
Statistics
Matches: 103, Mismatches: 15, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
41 2 0.02
42 30 0.29
43 38 0.37
44 33 0.32
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACGTGGTCTTACACGAAATCAAATATG
Found at i:31920521 original size:24 final size:24
Alignment explanation
Indices: 31920492--31920540 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
31920482 GACCCAAGCA
*
31920492 CCTCCAAGGCCTCTTCCACGGCCT
1 CCTCCAAGGCCTCTTCCACGACCT
31920516 CCTCCAAGGCCTCTTCCACGACCT
1 CCTCCAAGGCCTCTTCCACGACCT
31920540 C
1 C
31920541 TTTATCGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.14, C:0.51, G:0.14, T:0.20
Consensus pattern (24 bp):
CCTCCAAGGCCTCTTCCACGACCT
Found at i:31920540 original size:12 final size:12
Alignment explanation
Indices: 31920494--31920542 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
31920484 CCCAAGCACC
*
31920494 TCCAAGGCCTCT
1 TCCACGGCCTCT
*
31920506 TCCACGGCCTCC
1 TCCACGGCCTCT
*
31920518 TCCAAGGCCTCT
1 TCCACGGCCTCT
*
31920530 TCCACGACCTCT
1 TCCACGGCCTCT
31920542 T
1 T
31920543 TATCGATTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.14, C:0.47, G:0.14, T:0.24
Consensus pattern (12 bp):
TCCACGGCCTCT
Found at i:31930754 original size:23 final size:22
Alignment explanation
Indices: 31930724--31930767 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
31930714 CCCCTTGCAA
31930724 TGCAACATA-ATATCATACATGGG
1 TGCAACATACATAT-A-ACATGGG
31930747 TGCAACATACATATAACATGG
1 TGCAACATACATATAACATGG
31930768 CATGCTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 6 0.30
23 10 0.50
24 4 0.20
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (22 bp):
TGCAACATACATATAACATGGG
Found at i:31932571 original size:47 final size:47
Alignment explanation
Indices: 31932499--31932902 Score: 625
Period size: 47 Copynumber: 8.5 Consensus size: 47
31932489 CCCTTCGGGA
* * * * * * *
31932499 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
31932546 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31932593 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31932642 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31932689 CTTATCACATATATATACAC-TTCACATTCATCACAT-GGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31932736 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31932783 CTTATCATATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31932829 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31932876 CTTATCACGTATATATACACTTTCACA
1 CTTATCAC--ATATATACACTTTCACA
31932903 AATTTTAATA
Statistics
Matches: 334, Mismatches: 14, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
45 10 0.03
46 60 0.18
47 176 0.53
48 16 0.05
49 72 0.22
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:31932661 original size:96 final size:95
Alignment explanation
Indices: 31932499--31932902 Score: 665
Period size: 96 Copynumber: 4.3 Consensus size: 95
31932489 CCCTTCGGGA
* * * * * *
31932499 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTT-CACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
31932562 ACTTTCACATTCATCACATTGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
31932593 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACA-CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
31932658 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
31932689 CTTATCACATATATATACACTTCACATTCATCACAT-GGCCATTAGGCCTTATCACATATATACA
1 CTTATCACATATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
*
31932753 CTTTCACATTCATCACATTGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
31932783 CTTAT--CATATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTATCACATATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
31932846 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
*
31932876 CTTATCACGTATATATACACTTTCACA
1 CTTATCACATATATATACAC-TTCACA
31932903 AATTTTAATA
Statistics
Matches: 293, Mismatches: 10, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
92 29 0.10
93 62 0.21
94 72 0.25
95 30 0.10
96 97 0.33
97 3 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:31932868 original size:187 final size:190
Alignment explanation
Indices: 31932499--31932902 Score: 692
Period size: 187 Copynumber: 2.1 Consensus size: 190
31932489 CCCTTCGGGA
* *
31932499 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTT-CACATCCATCACGATGGCCACTAGGCCCTATCACATATATAC
31932562 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCA
65 ACTTTCACATTCATCACATTGGCCATTAGGCCTTAT-ACATATATATACACCTTCACATTCATCA
31932627 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
31932689 CTTATCACATATATATACACTTCACATTCATCAC-ATGGCCATTAGGCCTTATCACATATATACA
1 CTTATCACATATATATACACTTCACATCCATCACGATGGCCACTAGGCCCTATCACATATATACA
31932753 CTTTCACATTCATCACATTGGCCATTAGGCCTTAT-CATATATATACA-CTTCACATTCATCACA
66 CTTTCACATTCATCACATTGGCCATTAGGCCTTATACATATATATACACCTTCACATTCATCACA
31932816 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31932876 CTTATCACGTATATATACACTTTCACA
1 CTTATCACATATATATACAC-TTCACA
31932903 AATTTTAATA
Statistics
Matches: 205, Mismatches: 6, Indels: 8
0.94 0.03 0.04
Matches are distributed among these distances:
187 95 0.46
188 18 0.09
190 71 0.35
191 12 0.06
192 9 0.04
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATATACACTTCACATCCATCACGATGGCCACTAGGCCCTATCACATATATACA
CTTTCACATTCATCACATTGGCCATTAGGCCTTATACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:31936702 original size:40 final size:40
Alignment explanation
Indices: 31936656--31936860 Score: 358
Period size: 40 Copynumber: 5.1 Consensus size: 40
31936646 CGAATACACG
*
31936656 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
*
31936696 TCACTAGCACAAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
31936736 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
31936776 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCTGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGTCC-GGATACA
* *
31936816 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
31936856 TCACT
1 TCACT
31936861 CTCAATTCTC
Statistics
Matches: 159, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
39 2 0.01
40 155 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
Found at i:31939057 original size:47 final size:47
Alignment explanation
Indices: 31938985--31939393 Score: 620
Period size: 47 Copynumber: 8.5 Consensus size: 47
31938975 CCCTTCGGGA
* * * * * *
31938985 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
31939032 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
31939079 CTTATCACATATATATACACCTTCACATTCATCACATTGCCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
31939128 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
31939175 CTTATCACATATATATACACCTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
31939224 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
31939271 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
31939320 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
31939367 CTTATCACGTATATATACACTTTCACA
1 CTTATCAC--ATATATACACTTTCACA
31939394 AATTTTAATA
Statistics
Matches: 335, Mismatches: 19, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
47 183 0.55
49 152 0.45
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:31939147 original size:96 final size:96
Alignment explanation
Indices: 31938985--31939393 Score: 689
Period size: 96 Copynumber: 4.3 Consensus size: 96
31938975 CCCTTCGGGA
* * * * *
31938985 CTTATCACAT-T-TATACA-CTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATA
1 CTTATCACATATATATACACCTT-CACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
*
31939047 CACTTTCACATTCATCACATTGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
31939079 CTTATCACATATATATACACCTTCACATTCATCACATTGCCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
31939144 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
31939175 CTTATCACATATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
*
31939240 ACTTTCACATTCATCACATTGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
31939271 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
31939336 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
31939367 CTTATCACGTATATATACACTTTCACA
1 CTTATCACATATATATACACCTTCACA
31939394 AATTTTAATA
Statistics
Matches: 299, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
94 10 0.03
95 1 0.00
96 285 0.95
97 3 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:31939233 original size:22 final size:22
Alignment explanation
Indices: 31939205--31939280 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
31939195 CTTCACATTC
31939205 ATCACATTGGCCATTAGGCCTT
1 ATCACATTGGCCATTAGGCCTT
*** *** *
31939227 ATCACATATATACACTTTCACATT
1 ATCACAT-TGGCCA-TTAGGCCTT
31939251 CATCACATTGGCCATTAGGCCTT
1 -ATCACATTGGCCATTAGGCCTT
31939274 ATCACAT
1 ATCACAT
31939281 ATATATACAC
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTAGGCCTT
Found at i:31941988 original size:27 final size:27
Alignment explanation
Indices: 31941934--31942084 Score: 155
Period size: 27 Copynumber: 5.7 Consensus size: 27
31941924 GGCTGTCACA
* *
31941934 GGTATTACAGTCA-TTTACCCTACAGG
1 GGTATTTCAGTCATTTTACCCTATAGG
* *
31941960 GGTATTTCAATCATTTTACCCTATGGG
1 GGTATTTCAGTCATTTTACCCTATAGG
* * *
31941987 GGTATTTCGGTCATTTTACTCT-TAAG
1 GGTATTTCAGTCATTTTACCCTATAGG
* *
31942013 GGTATTTCGGTCATTTTACCTTATAGG
1 GGTATTTCAGTCATTTTACCCTATAGG
* *
31942040 AGTATTTCAGTCATTTAACCCTAT-GAG
1 GGTATTTCAGTCATTTTACCCTATAG-G
**
31942067 GGTATTTTGGTCATTTTA
1 GGTATTTCAGTCATTTTA
31942085 TCACAGAAGG
Statistics
Matches: 102, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
26 34 0.33
27 68 0.67
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.42
Consensus pattern (27 bp):
GGTATTTCAGTCATTTTACCCTATAGG
Found at i:31942016 original size:53 final size:54
Alignment explanation
Indices: 31941935--31942073 Score: 156
Period size: 53 Copynumber: 2.6 Consensus size: 54
31941925 GCTGTCACAG
* * * * *
31941935 GTATTACAGTCATTT-ACCCTACAGGGGTATTTCAATCATTTTACCCTATGGGG
1 GTATTTCAGTCATTTAACCCTATAAGGGTATTTCAATCATTTTACCCTATAGGA
* * * ** *
31941988 GTATTTCGGTCATTTTACTCT-TAAGGGTATTTCGGTCATTTTACCTTATAGGA
1 GTATTTCAGTCATTTAACCCTATAAGGGTATTTCAATCATTTTACCCTATAGGA
*
31942041 GTATTTCAGTCATTTAACCCTATGAGGGTATTT
1 GTATTTCAGTCATTTAACCCTATAAGGGTATTT
31942074 TGGTCATTTT
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
53 56 0.80
54 14 0.20
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (54 bp):
GTATTTCAGTCATTTAACCCTATAAGGGTATTTCAATCATTTTACCCTATAGGA
Found at i:31942048 original size:80 final size:79
Alignment explanation
Indices: 31941934--31942084 Score: 212
Period size: 80 Copynumber: 1.9 Consensus size: 79
31941924 GGCTGTCACA
* * *
31941934 GGTATTACAGTCATTTACCCTACAGGGGTATTTCAATCATTTTACCCTATGGGGGTATTTCGGTC
1 GGTATTACAGTCATTTACCCTACAGGAGTATTTCAATCATTTAACCCTATGAGGGTATTTCGGTC
31941999 ATTTTACTCTTAAG
66 ATTTTACTCTTAAG
* * * * * *
31942013 GGTATTTCGGTCATTTTACCTTATAGGAGTATTTCAGTCATTTAACCCTATGAGGGTATTTTGGT
1 GGTATTACAGTCA-TTTACCCTACAGGAGTATTTCAATCATTTAACCCTATGAGGGTATTTCGGT
31942078 CATTTTA
65 CATTTTA
31942085 TCACAGAAGG
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
79 11 0.18
80 51 0.82
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.42
Consensus pattern (79 bp):
GGTATTACAGTCATTTACCCTACAGGAGTATTTCAATCATTTAACCCTATGAGGGTATTTCGGTC
ATTTTACTCTTAAG
Found at i:31942106 original size:27 final size:27
Alignment explanation
Indices: 31942076--31942203 Score: 123
Period size: 27 Copynumber: 4.7 Consensus size: 27
31942066 GGGTATTTTG
* *
31942076 GTCATTTTATCACAGAAGGGAAAAATC
1 GTCATTTTATCACAAAAGGGCAAAATC
* * * *
31942103 GTCATTTTATCAGAAAATGGTAAATTC
1 GTCATTTTATCACAAAAGGGCAAAATC
* * * *
31942130 ATCATTTTATTATAAAAAGGCAAAATC
1 GTCATTTTATCACAAAAGGGCAAAATC
*
31942157 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACAAAAGGGCAAAATC
* *
31942184 AT-ATTTTTATCACATAAGGG
1 GTCA-TTTTATCACAAAAGGG
31942204 TTCAGGTATG
Statistics
Matches: 83, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 1 0.01
27 82 0.99
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (27 bp):
GTCATTTTATCACAAAAGGGCAAAATC
Found at i:31942135 original size:54 final size:54
Alignment explanation
Indices: 31942077--31942203 Score: 139
Period size: 54 Copynumber: 2.4 Consensus size: 54
31942067 GGTATTTTGG
* * * * *
31942077 TCATTTTATCACAGAAGGGAAAAATCGTCATTTTATCAGAAAATGGTAAATTCA
1 TCATTTTATCACAAAAGGGAAAAATCGTCATTTTATCACAAAAGGGCAAAATCA
* * * * *
31942131 TCATTTTATTATAAAAAGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCA
1 TCATTTTATCACAAAAGGGAAAAATCGTCATTTTATCACAAAAGGGCAAAATCA
*
31942185 T-ATTTTTATCACATAAGGG
1 TCA-TTTTATCACAAAAGGG
31942204 TTCAGGTATG
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
53 1 0.02
54 57 0.98
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (54 bp):
TCATTTTATCACAAAAGGGAAAAATCGTCATTTTATCACAAAAGGGCAAAATCA
Found at i:31942347 original size:18 final size:18
Alignment explanation
Indices: 31942307--31942348 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
31942297 CCATAATGCG
31942307 AGCCCATGTAGGCCCACA
1 AGCCCATGTAGGCCCACA
* *
31942325 CGCCCGTGT-GGCCCACGA
1 AGCCCATGTAGGCCCAC-A
31942343 AGCCCA
1 AGCCCA
31942349 ATTATGGCCT
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.21, C:0.43, G:0.26, T:0.10
Consensus pattern (18 bp):
AGCCCATGTAGGCCCACA
Found at i:31944950 original size:23 final size:23
Alignment explanation
Indices: 31944924--31944967 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
31944914 TATATCCATA
* *
31944924 CCAAAATCATGCCAAATCATAAC
1 CCAAAATCATACCAAAACATAAC
*
31944947 CCAAAGTCATACCAAAACATA
1 CCAAAATCATACCAAAACATA
31944968 TGTTTCATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.50, C:0.30, G:0.05, T:0.16
Consensus pattern (23 bp):
CCAAAATCATACCAAAACATAAC
Found at i:31945735 original size:43 final size:42
Alignment explanation
Indices: 31945669--31945769 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 42
31945659 AACTCGTACA
*
31945669 ATGCCAATGTCCCAGATGTGGTCTTACATG-TAATCAAATATCG
1 ATGCCAATGTCCCAGATGTGGTCTTACACGAT-ATCAAATA-CG
* *
31945712 ATGCCACTGTCCCAGATAG-GGTCTTATACGATATCAAATACG
1 ATGCCAATGTCCCAGAT-GTGGTCTTACACGATATCAAATACG
* *
31945754 ATGCCGATGTCTCAGA
1 ATGCCAATGTCCCAGA
31945770 CATTGTCTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
42 15 0.30
43 33 0.66
44 2 0.04
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (42 bp):
ATGCCAATGTCCCAGATGTGGTCTTACACGATATCAAATACG
Found at i:31950400 original size:49 final size:50
Alignment explanation
Indices: 31950328--31950554 Score: 233
Period size: 49 Copynumber: 4.6 Consensus size: 50
31950318 CTGGTACGCA
* *
31950328 TAGTAGCCTGCACTTAGTACTACACATGCGA-CTAATCATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATCATCCGGTACACG
* * * * ** *
31950377 TAGTAGCTTGCACTTAGTACTACATACGTGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATCATCCGGTACACG
* * * * * * *
31950427 TAGTAGCCTGCACTTAGAACTACACACGTGATCGAAGTTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-TCATCCGGTACACG
** * *
31950478 TAGTAGCCTATACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATCATCCGGTACACG
* *
31950527 TAGTAGCCTGCACTTAATACCACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
31950555 TGACGTCACA
Statistics
Matches: 143, Mismatches: 33, Indels: 4
0.79 0.18 0.02
Matches are distributed among these distances:
49 62 0.43
50 46 0.32
51 35 0.24
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATCATCCGGTACACG
Found at i:31950837 original size:27 final size:27
Alignment explanation
Indices: 31950807--31950859 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
31950797 CATACAACCT
* *
31950807 ATGTAATAGTAATTTAACATTCAATTC
1 ATGTAACAATAATTTAACATTCAATTC
**
31950834 ATGTAACAATAATTTGCCATTCAATT
1 ATGTAACAATAATTTAACATTCAATT
31950860 TCACATGACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.40
Consensus pattern (27 bp):
ATGTAACAATAATTTAACATTCAATTC
Found at i:31956251 original size:25 final size:25
Alignment explanation
Indices: 31956203--31956253 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
31956193 TACCCTTATA
* * *
31956203 ATGTGAAAATGACCTTTTTGCCCCT
1 ATGTGAAAATGACCATTATACCCCT
31956228 ATGTGAAAATGACCATTATACCCCT
1 ATGTGAAAATGACCATTATACCCCT
31956253 A
1 A
31956254 AGTTTATGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (25 bp):
ATGTGAAAATGACCATTATACCCCT
Found at i:31956311 original size:10 final size:10
Alignment explanation
Indices: 31956296--31956334 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
31956286 TGCTTTTGTA
31956296 CATGATATGC
1 CATGATATGC
31956306 CATGATATGC
1 CATGATATGC
31956316 ACATGATATGC
1 -CATGATATGC
31956327 CATGATAT
1 CATGATAT
31956335 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:31956320 original size:21 final size:21
Alignment explanation
Indices: 31956295--31956334 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
31956285 CTGCTTTTGT
31956295 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
31956316 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
31956335 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:31962850 original size:25 final size:25
Alignment explanation
Indices: 31962822--31962872 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
31962812 CCCTTATAAT
* * *
31962822 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
31962847 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
31962872 G
1 G
31962873 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCCCTAG
Found at i:31962939 original size:11 final size:11
Alignment explanation
Indices: 31962912--31962944 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
31962902 CTGCTTTTGT
31962912 ACATGATATGC
1 ACATGATATGC
31962923 -CATGATATGC
1 ACATGATATGC
31962933 ACATGATATGC
1 ACATGATATGC
31962944 A
1 A
31962945 TGGGTTGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (11 bp):
ACATGATATGC
Found at i:31965730 original size:49 final size:49
Alignment explanation
Indices: 31965671--31965908 Score: 237
Period size: 49 Copynumber: 4.8 Consensus size: 49
31965661 GTAGACAAGG
* * * *
31965671 TTATCTAGTACACATAGTAGCCTACACTTAGTACAACACATGCGACCAA
1 TTATCCAGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
** ***
31965720 TTATCCAGTACACGTAGTATTCTGCACTTAGTACTACACACATGACCTAA
1 TTATCCAGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
** * * * * *
31965770 CCAT-CTG-ATCACGTAGTAGCCTACACTTAGTACTACACAAGTGATCGAA
1 TTATCCAGTA-CACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
** * *
31965819 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -TTATCCAGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
*
31965869 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TTATCCAGTACACGTAGTAGCCTGCACTTAGTACTACACA
31965909 CGTGATCTCA
Statistics
Matches: 152, Mismatches: 31, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
48 1 0.01
49 109 0.72
50 10 0.07
51 31 0.20
52 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (49 bp):
TTATCCAGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:31965856 original size:100 final size:99
Alignment explanation
Indices: 31965679--31965915 Score: 262
Period size: 100 Copynumber: 2.4 Consensus size: 99
31965669 GGTTATCTAG
* * * * * **
31965679 TACACATAGTAGCCTACACTTAGTACAACACATGCGA-CCAATTATCCAGTACACGTAGTATTCT
1 TACACGTAGTAGCCTACACTTAGTACTACACAAGTGATCCAATTATCCAGTACACATAGTAGCCT
* *
31965743 GCACTTAGTACTACACACATGACCTAACCATCTGA
66 GCACTTAGTACTACACACACGACC-AACCATCCGA
* ** *
31965778 T-CACGTAGTAGCCTACACTTAGTACTACACAAGTGATCGAAGTTATCGGGTACGCATAGTAGCC
1 TACACGTAGTAGCCTACACTTAGTACTACACAAGTGATCCAA-TTATCCAGTACACATAGTAGCC
** ** *
31965842 TGCACTTAGTACTACACATGCGACCAATTATCCGG
65 TGCACTTAGTACTACACACACGACCAACCATCCGA
* *
31965877 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC
1 TACACGTAGTAGCCTACACTTAGTACTACACAAGTGATC
31965916 TCACAATAGA
Statistics
Matches: 115, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
98 31 0.27
99 11 0.10
100 73 0.63
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (99 bp):
TACACGTAGTAGCCTACACTTAGTACTACACAAGTGATCCAATTATCCAGTACACATAGTAGCCT
GCACTTAGTACTACACACACGACCAACCATCCGA
Found at i:31968438 original size:31 final size:31
Alignment explanation
Indices: 31968400--31968462 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
31968390 GCTAAACCTA
31968400 ATTTAACAAGAACTGAGTCAAGTATAGTTAG
1 ATTTAACAAGAACTGAGTCAAGTATAGTTAG
31968431 ATTTAACAAGAACTGAGTCAAGTATAGTTAG
1 ATTTAACAAGAACTGAGTCAAGTATAGTTAG
31968462 A
1 A
31968463 CCTACTATTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (31 bp):
ATTTAACAAGAACTGAGTCAAGTATAGTTAG
Found at i:31988209 original size:22 final size:22
Alignment explanation
Indices: 31988184--31988232 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
31988174 GCTCAACGTT
*
31988184 GTAGACAGGAC-GACTCAAAGCC
1 GTAGACAAGACAG-CTCAAAGCC
* *
31988206 GTAGGCAAGACAGCTCAATGCC
1 GTAGACAAGACAGCTCAAAGCC
31988228 GTAGA
1 GTAGA
31988233 TATCACAGCA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.35, C:0.24, G:0.29, T:0.12
Consensus pattern (22 bp):
GTAGACAAGACAGCTCAAAGCC
Found at i:31994665 original size:43 final size:42
Alignment explanation
Indices: 31994617--31994784 Score: 142
Period size: 43 Copynumber: 4.0 Consensus size: 42
31994607 ATCGAGATAC
31994617 GATTACATGTAAGACCATGTCTGGGAAATTGGCATTGTATTGT
1 GATTACATGTAAGACCATGTCTGGGAAATTGGCATTGTA-TGT
* ** * *
31994660 GATTACGTGTAAGACCATGTCTGGGGCATTGCCATTGCTATAT
1 GATTACATGTAAGACCATGTCTGGGAAATTGGCATTG-TATGT
*** * * * *
31994703 GATTTTGTTTAAGACCCTGTCTGGGATAGTT-GCATCAGTATGT
1 GATTACATGTAAGACCATGTCTGGGA-AATTGGCAT-TGTATGT
* * * *
31994746 GATAACATGTAAGACCATATCTGGGATA-TGGCATGGTAT
1 GATTACATGTAAGACCATGTCTGGGAAATTGGCATTGTAT
31994785 TAACTTTATG
Statistics
Matches: 96, Mismatches: 25, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
41 5 0.05
42 4 0.04
43 82 0.85
44 5 0.05
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGAAATTGGCATTGTATGT
Found at i:32000916 original size:80 final size:80
Alignment explanation
Indices: 32000832--32000980 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
32000822 TATGGTAACC
* * * *
32000832 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
32000896 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
32000912 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
32000977 CCGG
66 CCGG
32000981 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:32000922 original size:40 final size:38
Alignment explanation
Indices: 32000873--32000980 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
32000863 ATCACGATTT
*
32000873 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
32000913 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
32000953 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
32000981 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:32005150 original size:6 final size:6
Alignment explanation
Indices: 32005129--32005238 Score: 91
Period size: 6 Copynumber: 17.8 Consensus size: 6
32005119 TATTAGAACT
* * *
32005129 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
32005178 AGAATC AGAATC AG-GTGAC AGAATC AGAATC AGTATC AGGTAA-C AAAATC
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC AGAATC
32005228 AGAATC AGAAT
1 AGAATC AGAAT
32005239 GTGAATGCAA
Statistics
Matches: 83, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.05
6 67 0.81
7 9 0.11
8 3 0.04
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:32005174 original size:25 final size:25
Alignment explanation
Indices: 32005141--32005238 Score: 115
Period size: 25 Copynumber: 3.7 Consensus size: 25
32005131 AATCAAAATG
32005141 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGT----G-A-C
32005172 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* *
32005197 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
32005222 AAAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
32005239 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
25 39 0.62
26 1 0.02
27 1 0.02
31 22 0.35
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.17
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:32005179 original size:31 final size:31
Alignment explanation
Indices: 32005141--32005216 Score: 143
Period size: 31 Copynumber: 2.5 Consensus size: 31
32005131 AATCAAAATG
32005141 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
32005172 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
*
32005203 AGAATCAGTATCAG
1 AGAATCAGAATCAG
32005217 GTAACAAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.45, C:0.16, G:0.22, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTGACAGAATC
Found at i:32005231 original size:31 final size:30
Alignment explanation
Indices: 32005134--32005238 Score: 121
Period size: 31 Copynumber: 3.6 Consensus size: 30
32005124 GAACTAGAAT
*
32005134 CAAAATGAGAATCAGAATCAGAATCAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGGT-A
*
32005165 CAGAATCAGAATCAGAATCAGAATCAGGT-
1 CAAAATCAGAATCAGAATCAGAATCAGGTA
* *
32005194 ---GA-CAGAATCAGAATCAGTATCAGGTAA
1 CAAAATCAGAATCAGAATCAGAATCAGGT-A
32005221 CAAAATCAGAATCAGAAT
1 CAAAATCAGAATCAGAAT
32005239 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
25 22 0.35
26 1 0.02
30 1 0.02
31 39 0.62
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (30 bp):
CAAAATCAGAATCAGAATCAGAATCAGGTA
Found at i:32005945 original size:27 final size:27
Alignment explanation
Indices: 32005905--32005963 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
32005895 ACAATCACAG
32005905 TAATTCTACACTACAGGGGTATTTCAA
1 TAATTCTACACTACAGGGGTATTTCAA
* *
32005932 TAATTCTACCCTACAGGGGTATTTTAA
1 TAATTCTACACTACAGGGGTATTTCAA
32005959 TAATT
1 TAATT
32005964 TTGTAAATCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (27 bp):
TAATTCTACACTACAGGGGTATTTCAA
Found at i:32005978 original size:27 final size:27
Alignment explanation
Indices: 32005948--32006232 Score: 202
Period size: 27 Copynumber: 10.6 Consensus size: 27
32005938 TACCCTACAG
** *
32005948 GGGTATTTTAATAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGCAAATCGA
**** * * * *
32005975 GGGTAAAACGGTAATTCTGTAGATCGG
1 GGGTATTTTGGTAATTTTGCAAATCGA
* * *
32006002 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTGCAAATCGA
* ** * *
32006029 GGGCATTTCAGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTGCAAATCGA
*
32006056 -GGTATTTTGGTAATTTTACAAATC-A
1 GGGTATTTTGGTAATTTTGCAAATCGA
* *
32006081 GAGGTATTTCGGTAATTTTGCAAATCGG
1 G-GGTATTTTGGTAATTTTGCAAATCGA
* *
32006109 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTTGGTAATTTTGCAAATCGA
*
32006135 TGGGTATTTTGGTAATTTTGCTAAT-GTA
1 -GGGTATTTTGGTAATTTTGCAAATCG-A
* *
32006163 GGGTATTTTGATAATTTTGCTAATCGA
1 GGGTATTTTGGTAATTTTGCAAATCGA
** * * *
32006190 GGGTA-TTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTGCAAATCGA
* *
32006216 GGATATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
32006233 GGAAAACCAA
Statistics
Matches: 201, Mismatches: 49, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
25 1 0.00
26 39 0.19
27 158 0.79
28 3 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGCAAATCGA
Found at i:32006073 original size:53 final size:54
Alignment explanation
Indices: 32005997--32006131 Score: 175
Period size: 53 Copynumber: 2.5 Consensus size: 54
32005987 AATTCTGTAG
* * *
32005997 ATCGGGGGTACTTTGGTAATTTTACAAGTC-GAGGGCATTTCAGTAATTTTACAA
1 ATCGGAGGTATTTTGGTAATTTTACAAATCAGA-GGCATTTCAGTAATTTTACAA
* * * *
32006051 AT-TGAGGTATTTTGGTAATTTTACAAATCAGAGGTATTTCGGTAATTTTGCAA
1 ATCGGAGGTATTTTGGTAATTTTACAAATCAGAGGCATTTCAGTAATTTTACAA
*
32006104 ATCGGGGGTATTTTGGTAATTTTACAAA
1 ATCGGAGGTATTTTGGTAATTTTACAAA
32006132 CCATGGGTAT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 43 0.61
54 27 0.39
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (54 bp):
ATCGGAGGTATTTTGGTAATTTTACAAATCAGAGGCATTTCAGTAATTTTACAA
Found at i:32006131 original size:54 final size:53
Alignment explanation
Indices: 32005947--32006207 Score: 231
Period size: 54 Copynumber: 4.9 Consensus size: 53
32005937 CTACCCTACA
** ** *** * * *
32005947 GGGGTATTTTAATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAGATCG
1 GGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTGCAAAT-G
* * * * * *
32006001 GGGGTACTTTGGTAATTTTACAAGTCGAGGGCATTTCAGTAATTTTACAAATT
1 GGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTGCAAATG
*
32006054 GAGGTATTTTGGTAATTTTACAAATC-AGAGGTATTTCGGTAATTTTGCAAATCG
1 GGGGTATTTTGGTAATTTTACAAATCGAG-GGTATTTCGGTAATTTTGCAAAT-G
* * *
32006108 GGGGTATTTTGGTAATTTTACAAA-CCATGGGTATTTTGGTAATTTTGCTAATG
1 GGGGTATTTTGGTAATTTTACAAATCGA-GGGTATTTCGGTAATTTTGCAAATG
* * * * *
32006161 TAGGGTATTTTGATAATTTTGCTAATCGAGGGTA-TTCAGTAATTTTG
1 -GGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTG
32006208 TAAACCAAGG
Statistics
Matches: 168, Mismatches: 33, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
52 2 0.01
53 56 0.33
54 107 0.64
55 3 0.02
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (53 bp):
GGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTGCAAATG
Found at i:32006150 original size:107 final size:107
Alignment explanation
Indices: 32005948--32006207 Score: 267
Period size: 107 Copynumber: 2.4 Consensus size: 107
32005938 TACCCTACAG
* ** ** * * *
32005948 GGGTATTTTAATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAGATCGGGGGTACTTTGG
1 GGGTATTTTGATAATTTTACAAATCGAGGGT-ATTCGGTAATTTTGCAAATCGGGGGTACTTTGG
* *
32006013 TAATTTTACAAGTCGAGGGCATTTCAGTAATTTTACAAAT-T-
65 TAATTTTACAAGACCAGGGCATTTCAGTAATTTTACAAATGTA
* *
32006054 GAGGTATTTTGGTAATTTTACAAATC-AGAGGTATTTCGGTAATTTTGCAAATCGGGGGTATTTT
1 G-GGTATTTTGATAATTTTACAAATCGAG-GGTA-TTCGGTAATTTTGCAAATCGGGGGTACTTT
* ** * *
32006118 GGTAATTTTACAA-ACCATGGGTATTTTGGTAATTTTGCTAATGTA
63 GGTAATTTTACAAGACCA-GGGCATTTCAGTAATTTTACAAATGTA
* * *
32006163 GGGTATTTTGATAATTTTGCTAATCGAGGGTATTCAGTAATTTTG
1 GGGTATTTTGATAATTTTACAAATCGAGGGTATTCGGTAATTTTG
32006208 TAAACCAAGG
Statistics
Matches: 126, Mismatches: 21, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
106 6 0.05
107 91 0.72
108 26 0.21
109 3 0.02
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.40
Consensus pattern (107 bp):
GGGTATTTTGATAATTTTACAAATCGAGGGTATTCGGTAATTTTGCAAATCGGGGGTACTTTGGT
AATTTTACAAGACCAGGGCATTTCAGTAATTTTACAAATGTA
Found at i:32006248 original size:26 final size:27
Alignment explanation
Indices: 32006198--32006248 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
32006188 GAGGGTATTC
* * *
32006198 AGTAATTTTGTAAACCAAGGATATTTT
1 AGTAATTTGGAAAACCAAAGATATTTT
32006225 AGTAATTTGGAAAACCAAAG-TATT
1 AGTAATTTGGAAAACCAAAGATATT
32006249 CTAAACAAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.19
27 17 0.81
ACGTcount: A:0.41, C:0.08, G:0.16, T:0.35
Consensus pattern (27 bp):
AGTAATTTGGAAAACCAAAGATATTTT
Found at i:32009968 original size:31 final size:31
Alignment explanation
Indices: 32009927--32009990 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
32009917 CCTTTTCATA
*
32009927 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
32009958 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
32009989 TT
1 TT
32009991 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:32010236 original size:24 final size:24
Alignment explanation
Indices: 32010198--32010349 Score: 236
Period size: 24 Copynumber: 6.4 Consensus size: 24
32010188 CTGGAGGACT
* *
32010198 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTGATAACTGGGGCATA
*
32010223 AGCCCTTTTTATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
*
32010247 AGCCC-TTTGATAACTGGGGCGTA
1 AGCCCTTTTGATAACTGGGGCATA
32010270 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
32010294 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
*
32010318 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
32010341 AGCCCTTTT
1 AGCCCTTTT
32010350 TCACTTCCTC
Statistics
Matches: 119, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
23 43 0.36
24 72 0.61
25 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTGATAACTGGGGCATA
Found at i:32010285 original size:71 final size:71
Alignment explanation
Indices: 32010198--32010349 Score: 250
Period size: 71 Copynumber: 2.1 Consensus size: 71
32010188 CTGGAGGACT
* *
32010198 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTGATAACTG
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTG
*
32010263 GGGCGTA
65 GGGCATA
* *
32010270 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
32010335 GGCATA
66 GGCATA
32010341 AGCCCTTTT
1 AGCCCTTTT
32010350 TCACTTCCTC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 71 0.95
72 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
GGCATA
Found at i:32010349 original size:47 final size:48
Alignment explanation
Indices: 32010198--32010349 Score: 236
Period size: 47 Copynumber: 3.2 Consensus size: 48
32010188 CTGGAGGACT
* * *
32010198 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATA
1 AGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
* *
32010247 AGCCC-TTTGATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
32010294 AGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
32010341 AGCCCTTTT
1 AGCCCTTTT
32010350 TCACTTCCTC
Statistics
Matches: 96, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
47 69 0.72
48 23 0.24
49 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:32010422 original size:9 final size:9
Alignment explanation
Indices: 32010408--32010464 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
32010398 ATCTCGTGTG
32010408 CATATCATA
1 CATATCATA
*
32010417 CATATCATGTG
1 CATATCA--TA
32010428 CATATCATA
1 CATATCATA
* *
32010437 CATGTCATGTG
1 CATATCA--TA
32010448 CATATCATA
1 CATATCATA
32010457 CATATCAT
1 CATATCAT
32010465 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:32010427 original size:20 final size:20
Alignment explanation
Indices: 32010404--32010466 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
32010394 GAACATCTCG
32010404 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
32010424 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
32010444 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
32010464 TGT
1 TGT
32010467 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:32011800 original size:27 final size:27
Alignment explanation
Indices: 32011709--32011792 Score: 132
Period size: 27 Copynumber: 3.1 Consensus size: 27
32011699 GGGCATATTC
* *
32011709 GTCATTTTACCATACAGGGGCATTACG
1 GTCACTTTACCATACAGGGGCTTTACG
*
32011736 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
*
32011763 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
32011790 GTC
1 GTC
32011793 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:32011809 original size:27 final size:26
Alignment explanation
Indices: 32011709--32011802 Score: 125
Period size: 27 Copynumber: 3.5 Consensus size: 26
32011699 GGGCATATTC
* *
32011709 GTCATTTTACCATACAGGGGCATTACG
1 GTCACTTTACC-TACAGGGGCTTTACG
32011736 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACC-TACAGGGGCTTTACG
32011763 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
**
32011790 GTCTTTTTACCTA
1 GTCACTTTACCTA
32011803 ATAGGGGTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
26 4 0.07
27 55 0.90
28 2 0.03
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:32011884 original size:27 final size:27
Alignment explanation
Indices: 32011831--32012083 Score: 150
Period size: 27 Copynumber: 9.3 Consensus size: 27
32011821 TTTCATCCTA
* * * * * *
32011831 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * *
32011858 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAT
* ** *
32011885 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-T
* * *
32011914 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * *
32011941 CAGGGGTATTTTGGTAATTTTAAAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** * *
32011968 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * *
32011994 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTCGGTAATTTTATAAAT
* * *
32012021 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTCGGTAATTTTATAAAT
** * *
32012049 TGAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
*
32012076 CGAGGGTA
1 CAAGGGTA
32012084 AAATAGTAAT
Statistics
Matches: 177, Mismatches: 44, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
26 2 0.01
27 146 0.82
28 14 0.08
29 15 0.08
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAT
Found at i:32012092 original size:27 final size:27
Alignment explanation
Indices: 32012062--32012336 Score: 212
Period size: 27 Copynumber: 9.8 Consensus size: 27
32012052 GGGTATTTCT
* *
32012062 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
32012089 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
32012116 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
32012142 GATAATTTTGTAAATCGAGGGTAAAACG
1 G-TAATTCTGTAAATCGAGGGTAAAACA
* **
32012170 GTAATTCTGTAAGTTAAGGGTAAAACGGGGGTAAAA
1 GTAATTCTGTAAATCGAGGGTAAAAC---------A
* * **
32012206 TGGTAATTATGTAAATCGGGGGTAAAATG
1 --GTAATTCTGTAAATCGAGGGTAAAACA
* *
32012235 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
32012262 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
32012289 GTACTTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
32012316 GTAATTATGTAAATCG-GGGTA
1 GTAATTCTGTAAATCGAGGGTA
32012337 CTTTGGTAAT
Statistics
Matches: 201, Mismatches: 34, Indels: 27
0.77 0.13 0.10
Matches are distributed among these distances:
26 6 0.03
27 174 0.87
28 1 0.00
38 20 0.10
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:32012110 original size:81 final size:80
Alignment explanation
Indices: 32011934--32012191 Score: 207
Period size: 81 Copynumber: 3.2 Consensus size: 80
32011924 TCTGTAACTT
* *** *
32011934 TGTAAATCAGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCGGTAATTTCACAAA-CCAG
1 TGTAAATCAAGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTC-GTAATTTTGTAAATCGAG
***
32011998 TGGTATTTTGGTAATT-
65 -GGTAAAATGGTAATTC
* * *
32012014 T-TACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCG
1 TGTA-AATC-AAGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTC-GTAATTTTGTAAATCG
*
32012078 AGGGTAAAATAGTAATTC
63 AGGGTAAAATGGTAATTC
*** * * * * * ***
32012096 TGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAG
1 TGTAAATCAAGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCG-TAATTTTGTAAATCGAG
*
32012161 GGTAAAACGGTAATTC
65 GGTAAAATGGTAATTC
* *
32012177 TGTAAGTTAAGGGTA
1 TGTAAATCAAGGGTA
32012192 AAACGGGGGT
Statistics
Matches: 144, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
79 2 0.01
80 5 0.03
81 128 0.89
82 7 0.05
83 2 0.01
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.36
Consensus pattern (80 bp):
TGTAAATCAAGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCGTAATTTTGTAAATCGAGG
GTAAAATGGTAATTC
Found at i:32012213 original size:65 final size:65
Alignment explanation
Indices: 32012134--32012260 Score: 182
Period size: 65 Copynumber: 2.0 Consensus size: 65
32012124 ATAAATCGAC
* * *
32012134 GGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTTAAGGGTAAAACGGG
1 GGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGGG
* * * * *
32012199 GGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAAC
1 GGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAC
32012261 AGTAATTCTA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
65 54 1.00
ACGTcount: A:0.39, C:0.06, G:0.27, T:0.28
Consensus pattern (65 bp):
GGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGGG
Found at i:32012221 original size:92 final size:92
Alignment explanation
Indices: 32012106--32012289 Score: 260
Period size: 92 Copynumber: 2.0 Consensus size: 92
32012096 TGTAAATCAA
* * *
32012106 GGGTAAAATAGTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGG
1 GGGTAAAATAGTAATTATATAAATCGACGGTAAAACGATAATTTTGTAAATCAAGGGTAAAACAG
* * *
32012171 TAATTCTGTAAGTTAAGGGTAAAACGG
66 TAATTCTATAAATCAAGGGTAAAACGG
* * ** * *
32012198 GGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAACAG
1 GGGTAAAATAGTAATTATATAAATCGACGGTAAAACGATAATTTTGTAAATCAAGGGTAAAACAG
32012263 TAATTCTATAAATCAAGGGTAAAACGG
66 TAATTCTATAAATCAAGGGTAAAACGG
32012290 TACTTCTATA
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
92 80 1.00
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (92 bp):
GGGTAAAATAGTAATTATATAAATCGACGGTAAAACGATAATTTTGTAAATCAAGGGTAAAACAG
TAATTCTATAAATCAAGGGTAAAACGG
Found at i:32012229 original size:38 final size:38
Alignment explanation
Indices: 32012151--32012232 Score: 92
Period size: 38 Copynumber: 2.2 Consensus size: 38
32012141 CGATAATTTT
* * * *
32012151 GTAAATCGAGGGTAAAACGGTAATTCTGTAAGTTAAGG
1 GTAAAACGAGGGTAAAACGGTAATTATGTAAATCAAGG
* * **
32012189 GTAAAACGGGGGTAAAATGGTAATTATGTAAATCGGGG
1 GTAAAACGAGGGTAAAACGGTAATTATGTAAATCAAGG
32012227 GTAAAA
1 GTAAAA
32012233 TGGTAATTTT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.39, C:0.06, G:0.30, T:0.24
Consensus pattern (38 bp):
GTAAAACGAGGGTAAAACGGTAATTATGTAAATCAAGG
Found at i:32012229 original size:146 final size:146
Alignment explanation
Indices: 32012062--32012327 Score: 424
Period size: 146 Copynumber: 1.8 Consensus size: 146
32012052 GGGTATTTCT
* *
32012062 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
* * * *
32012127 AATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTTAAGGGTA
66 AATCAACGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAGTTAAGGGTA
32012192 AAACGGGGGTAAAATG
131 AAACGGGGGTAAAATG
* * *
32012208 GTAATTATGTAAATCGGGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
* * *
32012273 AATCAAGGGTAAAACGGTACTTCTATAAATCGAGGGTAAAACGGTAATTATGTAA
66 AATCAACGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAA
32012328 ATCGGGGTAC
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
146 108 1.00
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.29
Consensus pattern (146 bp):
GTAATTATGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
AATCAACGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAGTTAAGGGTA
AAACGGGGGTAAAATG
Found at i:32012282 original size:119 final size:119
Alignment explanation
Indices: 32012070--32012316 Score: 307
Period size: 119 Copynumber: 2.1 Consensus size: 119
32012060 CTGTAATTTT
* * * *
32012070 GTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGACG
1 GTAAAACGGGGGTAAAATAGTAATTATGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG
* * * * * *
32012135 GTAAAACGATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTTAAGG
66 GTAAAACGATAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCAAGG
* ** * * * *
32012189 GTAAAACGGGGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTTTGTAAATCAAGG
1 GTAAAACGGGGGTAAAATAGTAATTATGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG
* *
32012254 GTAAAAC-AGTAATTCTATAAATCAAGGGTAAAACGGTACTTCTATAAATCGAGG
66 GTAAAACGA-TAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCAAGG
32012308 GTAAAACGG
1 GTAAAACGG
32012317 TAATTATGTA
Statistics
Matches: 108, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
118 1 0.01
119 107 0.99
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (119 bp):
GTAAAACGGGGGTAAAATAGTAATTATGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG
GTAAAACGATAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCAAGG
Found at i:32013839 original size:93 final size:93
Alignment explanation
Indices: 32013725--32013896 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
32013715 GCCCATAAGT
* *
32013725 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGCGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGCGAACTCAGACTCAACTCAA
32013790 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
32013818 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGCGAACTCAGACTCAACTCAA
*
32013883 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
32013897 CAAATATCCA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGCGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:32013892 original size:46 final size:46
Alignment explanation
Indices: 32013717--32013892 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
32013707 TGTAACCCGC
* *
32013717 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * * * *
32013763 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* *** *
32013809 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
32013856 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
32013893 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 71 0.67
47 35 0.33
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:32020544 original size:57 final size:58
Alignment explanation
Indices: 32020454--32020576 Score: 140
Period size: 57 Copynumber: 2.1 Consensus size: 58
32020444 TACCGGTCTA
* * * * * * *
32020454 GGCTAAATCCTATCCGTAGCATATGCTCTAGAGAACTTA-ATTTGGATTACCCATCCG
1 GGCTAAATCCAATCCATAACATAAGCTCAAGAGAACTTACATTAGAATTACCCATCCG
* * *
32020511 GGCTAAATCCAATCTATAACATAAGCTCAAGAGAGCTTACATTAGAATTACCCATTCG
1 GGCTAAATCCAATCCATAACATAAGCTCAAGAGAACTTACATTAGAATTACCCATCCG
*
32020569 CGCTAAAT
1 GGCTAAAT
32020577 TCTATCTGCA
Statistics
Matches: 54, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
57 32 0.59
58 22 0.41
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (58 bp):
GGCTAAATCCAATCCATAACATAAGCTCAAGAGAACTTACATTAGAATTACCCATCCG
Found at i:32020590 original size:58 final size:57
Alignment explanation
Indices: 32020455--32020591 Score: 148
Period size: 58 Copynumber: 2.4 Consensus size: 57
32020445 ACCGGTCTAG
* * * * * * *
32020455 GCTAAATCCTATCCGTAGCATATGCTCTAGAGAACTTAATTTGGATTACCCATCCGG
1 GCTAAATCCTATCTGTAACATAAGCTCAAGAGAACTTAATTAGAATTACCCATCCGC
* * * *
32020512 GCTAAATCCAATCTATAACATAAGCTCAAGAGAGCTTACATTAGAATTACCCATTCGC
1 GCTAAATCCTATCTGTAACATAAGCTCAAGAGAACTTA-ATTAGAATTACCCATCCGC
* *
32020570 GCTAAATTCTATCTGCAACATA
1 GCTAAATCCTATCTGTAACATA
32020592 TGCAATATTA
Statistics
Matches: 64, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
57 31 0.48
58 33 0.52
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (57 bp):
GCTAAATCCTATCTGTAACATAAGCTCAAGAGAACTTAATTAGAATTACCCATCCGC
Found at i:32027247 original size:47 final size:47
Alignment explanation
Indices: 32027178--32027347 Score: 304
Period size: 47 Copynumber: 3.6 Consensus size: 47
32027168 AACAGCTCGT
32027178 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32027225 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32027272 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
32027319 AGTGTATACATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
32027348 TAATGTGAAA
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 119 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:32027354 original size:47 final size:46
Alignment explanation
Indices: 32027178--32027544 Score: 265
Period size: 48 Copynumber: 7.7 Consensus size: 46
32027168 AACAGCTCGT
* * * **
32027178 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAT-AATGTGAA
* * * **
32027225 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAT-AATGTGAA
* * * **
32027272 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAT-AATGTGAA
* **
32027319 AGTGTATACATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG--ATA-ATGTGAA
* * **
32027368 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG--ATA-ATGTGAA
* * * * *
32027416 A-TATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG--ATA-ATGTGAA
* * * * *
32027464 A-TGTGTATATGTCGTAAAGCCGAATGGCGAATGTGA-AATGCGTA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGATAATGTGAA
* *
32027508 TGAGATATGAATATGTGGTAAAGCCGAATGGCTAATG
1 AGTG-TAT--ATATGTGGTAAAGCCGAATGGCTAATG
32027545 AGAATGTTGT
Statistics
Matches: 285, Mismatches: 28, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
44 3 0.01
45 2 0.01
46 3 0.01
47 124 0.44
48 145 0.51
49 8 0.03
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (46 bp):
AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGATAATGTGAA
Found at i:32027387 original size:48 final size:48
Alignment explanation
Indices: 32027328--32027544 Score: 326
Period size: 48 Copynumber: 4.5 Consensus size: 48
32027318 AAGTGTATAC
* *
32027328 ATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATGTAT
* *
32027376 ATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATGTAT
* * *
32027424 ACGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATGTAT
* * * * *
32027472 ATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATGTAT
32027520 ATGTGGTAAAGCCGAATGGCTAATG
1 ATGTGGTAAAGCCGAATGGCTAATG
32027545 AGAATGTTGT
Statistics
Matches: 154, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 154 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (48 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATGTAT
Found at i:32027642 original size:37 final size:37
Alignment explanation
Indices: 32027582--32027678 Score: 133
Period size: 37 Copynumber: 2.6 Consensus size: 37
32027572 ACATGAAACT
*
32027582 TGGAAATATAT-TCCGGGTGAGACCCGATGACTACATG
1 TGGAAAT-TATGTCCGGGTAAGACCCGATGACTACATG
* *
32027619 TGGAAATTATGTCCAGGTAAGACCCGATGACTACGTG
1 TGGAAATTATGTCCGGGTAAGACCCGATGACTACATG
* *
32027656 TGGAGATTATGTCTGGGTAAGAC
1 TGGAAATTATGTCCGGGTAAGAC
32027679 TTCGTAATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
36 3 0.06
37 50 0.94
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (37 bp):
TGGAAATTATGTCCGGGTAAGACCCGATGACTACATG
Found at i:32030869 original size:41 final size:43
Alignment explanation
Indices: 32030810--32031019 Score: 169
Period size: 41 Copynumber: 4.8 Consensus size: 43
32030800 ATATTGATAA
* * * *
32030810 ATCGATGCCACTGTCCCAGGCAGGGTTTTACACG-AATCAAAT
1 ATCGATGTCAATGTCCCAGACAGGGTCTTACACGTAATCAAAT
* * *
32030852 A-CGATGTCGATGTCCCAGACATGGTCTTACACGTAATCACAT
1 ATCGATGTCAATGTCCCAGACAGGGTCTTACACGTAATCAAAT
* *
32030894 ATCGATAAATCAGTGCCACTATCCCAGACAGGGTCTTACACG-AATCAAAT
1 ATCG----AT--GT--CAATGTCCCAGACAGGGTCTTACACGTAATCAAAT
* * *
32030944 A-CGATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
1 ATCGATGTCAATGTCCCAGACAGGGTCTTACACGTAATCAAAT
* * *
32030986 ATCGATGCCAACGTTCCAGAC-GTGGTCTTACACG
1 ATCGATGTCAATGTCCCAGACAG-GGTCTTACACG
32031020 AGAACACATA
Statistics
Matches: 135, Mismatches: 20, Indels: 25
0.75 0.11 0.14
Matches are distributed among these distances:
41 49 0.36
42 17 0.13
43 31 0.23
45 2 0.01
47 2 0.01
49 4 0.03
50 8 0.06
51 22 0.16
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
ATCGATGTCAATGTCCCAGACAGGGTCTTACACGTAATCAAAT
Found at i:32030933 original size:92 final size:92
Alignment explanation
Indices: 32030758--32030991 Score: 353
Period size: 92 Copynumber: 2.5 Consensus size: 92
32030748 CACATATATC
* * * * * * *
32030758 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGCAATCACATATTGATAAATCGATGCCACTG
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGATAAATCGATGCCACTA
* *
32030823 TCCCAGGCAGGGTTTTACACGAATCAA
66 TCCCAGACAGGGTCTTACACGAATCAA
* *
32030850 ATACGATGTCGATGTCCCAGACATGGTCTTACACGTAATCACATATCGATAAATC-AGTGCCACT
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGATAAATCGA-TGCCACT
32030914 ATCCCAGACAGGGTCTTACACGAATCAA
65 ATCCCAGACAGGGTCTTACACGAATCAA
32030942 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGAT
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGAT
32030992 GCCAACGTTC
Statistics
Matches: 128, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
91 1 0.01
92 127 0.99
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (92 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGATAAATCGATGCCACTA
TCCCAGACAGGGTCTTACACGAATCAA
Found at i:32031005 original size:43 final size:41
Alignment explanation
Indices: 32030915--32031020 Score: 149
Period size: 43 Copynumber: 2.5 Consensus size: 41
32030905 AGTGCCACTA
* *
32030915 TCCCAGACAGGGTCTTACACGAATCAAATACGATGCCAATG
1 TCCCAGACATGGTCTTACACGAATCAAATACGATGCCAACG
*
32030956 TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACG
1 TCCCAGACATGGTCTTACACG-AATCAAATA-CGATGCCAACG
* *
32030999 TTCCAGACGTGGTCTTACACGA
1 TCCCAGACATGGTCTTACACGA
32031021 GAACACATAT
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
41 20 0.34
42 9 0.16
43 29 0.50
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACGAATCAAATACGATGCCAACG
Found at i:32041838 original size:6 final size:6
Alignment explanation
Indices: 32041820--32041931 Score: 131
Period size: 6 Copynumber: 18.3 Consensus size: 6
32041810 AAGAAGCATT
32041820 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* *
32041868 ATCAGA ATCAG- GTGACAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
32041918 ATCAAA ATCAGA AT
1 ATCAGA ATCAGA AT
32041932 GTGAATGCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
5 4 0.04
6 79 0.86
7 7 0.08
8 2 0.02
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:32041890 original size:31 final size:31
Alignment explanation
Indices: 32041829--32041931 Score: 156
Period size: 31 Copynumber: 3.4 Consensus size: 31
32041819 TATCAGAACT
32041829 AGAATCAGAATCAGAATCA-G-AATCAGAATC
1 AGAATCAGAATCAGAATCAGGTAA-CAGAATC
*
32041859 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
32041890 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
32041921 AAAATCAGAAT
1 AGAATCAGAAT
32041932 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
30 19 0.28
31 47 0.70
32 1 0.01
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:32042418 original size:27 final size:27
Alignment explanation
Indices: 32042397--32042581 Score: 244
Period size: 27 Copynumber: 6.9 Consensus size: 27
32042387 AGGTAAATTG
* **
32042397 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
32042424 GTAGTTCTGTAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
32042451 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
32042478 ATAATTTTGTAAATAGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * *
32042505 GTAATTCTGTCAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
32042532 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * *
32042559 GAAATTCTGTAAATCGAGTGTAA
1 GTAATTTTGTAAATCGAGGGTAA
32042582 CACCCCAATC
Statistics
Matches: 136, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAACA
Found at i:32044225 original size:29 final size:29
Alignment explanation
Indices: 32044191--32044293 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
32044181 TAATCAGCCG
** *
32044191 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
32044220 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
32044249 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
32044278 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
32044294 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:32052300 original size:29 final size:29
Alignment explanation
Indices: 32052266--32052368 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
32052256 TAATCAGCCG
** *
32052266 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
32052295 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
32052324 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
32052353 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
32052369 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:32055454 original size:40 final size:40
Alignment explanation
Indices: 32055409--32055575 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
32055399 CGGAATATAA
32055409 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
32055449 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
32055489 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
32055529 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
32055568 CCGGATAT
1 CCGGATAT
32055576 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32055559 original size:80 final size:79
Alignment explanation
Indices: 32055409--32055575 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
32055399 CGGAATATAA
* *
32055409 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
32055474 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
32055489 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
32055551 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
32055568 CCGGATAT
1 CCGGATAT
32055576 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:32056423 original size:17 final size:19
Alignment explanation
Indices: 32056400--32056445 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
32056390 AAGAAGCATG
32056400 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
32056418 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
32056436 AATCATGCTC
1 AATCATGCTC
32056446 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:32063450 original size:40 final size:40
Alignment explanation
Indices: 32063405--32063571 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
32063395 CGGAATATAA
32063405 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
32063445 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
32063485 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
32063525 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
32063564 CCGGATAT
1 CCGGATAT
32063572 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32063555 original size:80 final size:79
Alignment explanation
Indices: 32063405--32063571 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
32063395 CGGAATATAA
* *
32063405 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
32063470 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
32063485 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
32063547 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
32063564 CCGGATAT
1 CCGGATAT
32063572 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:32064419 original size:17 final size:19
Alignment explanation
Indices: 32064396--32064441 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
32064386 AAGAAGCATG
32064396 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
32064414 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
32064432 AATCATGCTC
1 AATCATGCTC
32064442 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:32065812 original size:43 final size:43
Alignment explanation
Indices: 32065743--32065853 Score: 152
Period size: 43 Copynumber: 2.6 Consensus size: 43
32065733 TTCAGGGGTC
* *
32065743 ACACGCCAATGTGAACAGACCATGTGCCTCACATGGCCATCAG
1 ACACGCCAGTGTGAACAGACCGTGTGCCTCACATGGCCATCAG
* *
32065786 ACACGCCTGTGTGAACAGGCCGTGTGCCTCACATGGCCATCAG
1 ACACGCCAGTGTGAACAGACCGTGTGCCTCACATGGCCATCAG
* * *
32065829 ACATGCCCGTGT-TACAGACCGTGTG
1 ACACGCCAGTGTGAACAGACCGTGTG
32065854 AAAACAGAGC
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 11 0.18
43 49 0.82
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (43 bp):
ACACGCCAGTGTGAACAGACCGTGTGCCTCACATGGCCATCAG
Found at i:32067086 original size:47 final size:47
Alignment explanation
Indices: 32066984--32067111 Score: 141
Period size: 47 Copynumber: 2.7 Consensus size: 47
32066974 AACCAATAAG
* * *
32066984 TACCTATACCATGGCCCGTAG-TCAAATCATGGTAACTTATCCCGGAG
1 TACCTATACCATGGCCCGTAGCT-AAATCAAGGTAACTCATCCCGGAA
* * * *
32067031 TACCTATACCATGGCCCATAGCTAAATCAAGGTAACTCCTCTCTGAA
1 TACCTATACCATGGCCCGTAGCTAAATCAAGGTAACTCATCCCGGAA
* * * *
32067078 TACTTATACCATTGCCCGTAGCCAAATAAAGGTA
1 TACCTATACCATGGCCCGTAGCTAAATCAAGGTA
32067112 TTATTCACAC
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 67 0.99
48 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCTAAATCAAGGTAACTCATCCCGGAA
Done.