Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 117 of 378
Found at i:32609460 original size:43 final size:43
Alignment explanation
Indices: 32609393--32609556 Score: 203
Period size: 42 Copynumber: 3.9 Consensus size: 43
32609383 TAAGATGCCA
* *
32609393 ATGCCATATCCCAGA-TATGGTCTTACATGGGATCACATATCG
1 ATGCCATATCCCAGACTATGGTCTTACACGAGATCACATATCG
* *
32609435 ATGCCGATAACCCA-ACTATGGTCTTACACGATG-TCTCATATCG
1 ATGCC-ATATCCCAGACTATGGTCTTACACGA-GATCACATATCG
* *
32609478 ATGCCATGTCCCAGAC-ATGGTCTTACACGAAATCACATATCG
1 ATGCCATATCCCAGACTATGGTCTTACACGAGATCACATATCG
* *
32609520 ATGCCATATCTCAGA-TATGGTCTTACACGAAATCACA
1 ATGCCATATCCCAGACTATGGTCTTACACGAGATCACA
32609557 CATAACCCTG
Statistics
Matches: 106, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
42 69 0.65
43 36 0.34
44 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCATATCCCAGACTATGGTCTTACACGAGATCACATATCG
Found at i:32609502 original size:85 final size:84
Alignment explanation
Indices: 32609393--32609549 Score: 226
Period size: 85 Copynumber: 1.9 Consensus size: 84
32609383 TAAGATGCCA
* * **
32609393 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCGATAACCCA-ACTATGGT
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCGATGCC-ATAACCCAGA-TATGGT
32609457 CTTACACGATGTCTCATATCG
64 CTTACACGATGTCTCATATCG
* * *
32609478 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCATATCTCAGATATGGTCT
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCGATGCCATAACCCAGATATGGTCT
32609543 TACACGA
66 TACACGA
32609550 AATCACACAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
84 21 0.33
85 43 0.67
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (84 bp):
ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCGATGCCATAACCCAGATATGGTCT
TACACGATGTCTCATATCG
Found at i:32613308 original size:47 final size:48
Alignment explanation
Indices: 32613230--32613495 Score: 239
Period size: 46 Copynumber: 5.7 Consensus size: 48
32613220 TGGGTAAAGT
*
32613230 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAT-ATCTC-AA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
** * ** *
32613277 GTAGATACGATGTCCCAGACATGGTCTTACACTAACT-ATCATCTCGTA
1 GCCGATGC-ATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
* * * *
32613325 GCCGGTGCATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCGAG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
* * *
32613371 GCCGATGCATGTCCCAAACAT-GTCTTACACTAGCTC-TCGTCTC-AA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
* * **
32613416 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAAT-GTG
1 -GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCGAA
*
32613465 GCCGATGCATGTCCCAGACCT-GTCTTACACT
1 GCCGATGCATGTCCCAGACATGGTCTTACACT
32613496 AGCCTACAAA
Statistics
Matches: 179, Mismatches: 30, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 75 0.42
47 74 0.41
48 28 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
Found at i:32613490 original size:140 final size:141
Alignment explanation
Indices: 32613230--32613495 Score: 369
Period size: 140 Copynumber: 1.9 Consensus size: 141
32613220 TGGGTAAAGT
* *
32613230 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATCTCAAGTAGATACGATGTCCCAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATCTCAAGTAGATACCATGTCCCAG
* *
32613295 ACATGGTCTTACACTAACTATCATCTCGTAGCCGGTGCATGTCCCAGACATGTCTTACACTGGCT
66 ACATGGTCTTACACTAACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
32613360 TACGTCTCGAG
131 TACGTCTCGAG
* * *
32613371 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTC-TCGTCTCAATGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCAT-ATCTCAA-GTAGATACCATGTCCC
** * * *
32613433 AGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACCTGTCTTACACT
64 AGACATGGTCTTACACTAACTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTACACT
32613496 AGCCTACAAA
Statistics
Matches: 110, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
138 1 0.01
139 20 0.18
140 81 0.74
141 8 0.07
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATCTCAAGTAGATACCATGTCCCAG
ACATGGTCTTACACTAACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
TACGTCTCGAG
Found at i:32620982 original size:47 final size:49
Alignment explanation
Indices: 32620909--32621174 Score: 236
Period size: 47 Copynumber: 5.7 Consensus size: 49
32620899 TGGGTAAGGT
*
32620909 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-TTCTCAA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCGTCTCAAG
* * * ** *
32620956 GTCTATGCCATGTCCCAGACATGGTCTTATACTGGCT-ATCACCTCGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCGTCTC-AAG
* * *
32621004 GCCAATG-CATGTCCCAGAC-TTGTCTTACACTGGCTTA-CGTCTCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCGTCTCAAG
* * *
32621050 GACGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCGTCTCAAG
* * * * **
32621096 GCCGATGCCATATCCCAGACATGATCTTACACTGGCTC-TCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCGT-CTCAAG
*
32621144 GCCGATG-AATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
32621175 AGCCCATAAA
Statistics
Matches: 180, Mismatches: 30, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 73 0.41
47 76 0.42
48 29 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCGTCTCAAG
Found at i:32621058 original size:46 final size:47
Alignment explanation
Indices: 32620909--32621132 Score: 194
Period size: 46 Copynumber: 4.8 Consensus size: 47
32620899 TGGGTAAGGT
* *
32620909 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT--TTCTCAA
1 GCCGATGCCATGTCCCAGAC-TTGTCTTACACTGGCT-ATACGTCTCAA
* * * * *
32620956 GTCTATGCCATGTCCCAGACATGGTCTTATACTGGCTATCAC--CTCGTA
1 GCCGATGCCATGTCCCAGAC-TTGTCTTACACTGGCTAT-ACGTCTC-AA
*
32621004 GCCAATG-CATGTCCCAGACTTGTCTTACACTGGCT-TACGTCTCAA
1 GCCGATGCCATGTCCCAGACTTGTCTTACACTGGCTATACGTCTCAA
* * * *
32621049 GGACGATG-CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAA
1 -GCCGATGCCATGTCCCAGACTTGTCTTACACTGGCTATACGTCTCAA
* *
32621095 TGCCGATGCCATATCCCAGACATGATCTTACACTGGCT
1 -GCCGATGCCATGTCCCAGACTTG-TCTTACACTGGCT
32621133 CTCATAATGT
Statistics
Matches: 150, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
44 2 0.01
45 2 0.01
46 64 0.43
47 64 0.43
48 18 0.12
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACTTGTCTTACACTGGCTATACGTCTCAA
Found at i:32621169 original size:140 final size:141
Alignment explanation
Indices: 32620911--32621174 Score: 347
Period size: 140 Copynumber: 1.9 Consensus size: 141
32620901 GGTAAGGTGC
* * * * *
32620911 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATTTCTCAAGTCTATGCCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATGTCTCAAGCCGATGCCATATCCCAGAC
* * ** * *
32620976 ATGGTCTTATACTGGCTATCACCTCGTAGCCAATGCATGTCCCAGACTTGTCTTACACTGGCTTA
66 ATGATCTTACACTGGCTATCAAATCGTAGCCAATGAATGTCCCAGACATGTCTTACACTGGCTTA
32621041 CGTCTCAAGGA
131 CGTCTCAAGGA
32621052 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGCCGATGCCATATCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-GTCTCAA-GCCGATGCCATATCCCAG
* * *
32621114 ACATGATCTTACACTGGCTCTCATAAT-GTGGCCGATGAATGTCCCAGACATGTCTTACACT
64 ACATGATCTTACACTGGCTATCA-AATCGTAGCCAATGAATGTCCCAGACATGTCTTACACT
32621175 AGCCCATAAA
Statistics
Matches: 106, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
138 1 0.01
139 20 0.19
140 79 0.75
141 6 0.06
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATGTCTCAAGCCGATGCCATATCCCAGAC
ATGATCTTACACTGGCTATCAAATCGTAGCCAATGAATGTCCCAGACATGTCTTACACTGGCTTA
CGTCTCAAGGA
Found at i:32622758 original size:42 final size:43
Alignment explanation
Indices: 32622660--32622779 Score: 120
Period size: 42 Copynumber: 2.8 Consensus size: 43
32622650 AACAAGTACA
* * * *
32622660 ATGCCGACGTCCCGGAC-GTGGTCTTACATGTAATTCAGTATCG
1 ATGCCGATGTCCCAGACAG-GGTCTTACACGTAAATCAGTATCG
**
32622703 ATGCCTCTGTCCCAGACAGGGTCTTACACG-AAATCAG-ATACG
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCAGTAT-CG
* * *
32622745 ATGCCGATGTCCCAAACATGGTCTTATACGTAAAT
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAAT
32622780 ATCAATTGAG
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
41 2 0.03
42 33 0.52
43 27 0.43
44 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCAGTATCG
Found at i:32625130 original size:28 final size:28
Alignment explanation
Indices: 32625098--32625185 Score: 115
Period size: 29 Copynumber: 3.1 Consensus size: 28
32625088 TCAAATACGT
**
32625098 AATAGAATAAAATTGATACCTTTATGAA
1 AATAGAACCAAATTGATACCTTTATGAA
*
32625126 AATAGGCACCAAATTGATACCTTTATGAA
1 AATA-GAACCAAATTGATACCTTTATGAA
*
32625155 AATCGACACCAAATTGATACC-TTATGAA
1 AATAGA-ACCAAATTGATACCTTTATGAA
32625183 AAT
1 AAT
32625186 CGGTACCAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
28 15 0.28
29 38 0.72
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.28
Consensus pattern (28 bp):
AATAGAACCAAATTGATACCTTTATGAA
Found at i:32625193 original size:28 final size:29
Alignment explanation
Indices: 32625107--32625198 Score: 150
Period size: 29 Copynumber: 3.2 Consensus size: 29
32625097 TAATAGAATA
*
32625107 AAATTGATACCTTTATGAAAATAGGCACC
1 AAATTGATACCTTTATGAAAATCGGCACC
*
32625136 AAATTGATACCTTTATGAAAATCGACACC
1 AAATTGATACCTTTATGAAAATCGGCACC
*
32625165 AAATTGATACC-TTATGAAAATCGGTACC
1 AAATTGATACCTTTATGAAAATCGGCACC
32625193 AAATTG
1 AAATTG
32625199 CTTTATTGTT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 21 0.36
29 38 0.64
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.28
Consensus pattern (29 bp):
AAATTGATACCTTTATGAAAATCGGCACC
Found at i:32633951 original size:39 final size:39
Alignment explanation
Indices: 32633897--32634088 Score: 285
Period size: 39 Copynumber: 4.9 Consensus size: 39
32633887 GAATGTTCGA
32633897 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
*
32633936 GTGATATCCGGGCTAAGCCTGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* *
32633975 GTGATATCCGGGCTAAGCTCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* * *
32634014 ATGATATTCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* * **
32634053 GTGATACCCGGGTTAAGTCCCGAAGGCCTTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
32634089 GGTTACCATA
Statistics
Matches: 139, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 123 0.88
40 16 0.12
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
Found at i:32634104 original size:78 final size:78
Alignment explanation
Indices: 32633897--32634117 Score: 255
Period size: 78 Copynumber: 2.8 Consensus size: 78
32633887 GAATGTTCGA
* * *** * *
32633897 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCTGAAGGC
1 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATATACGGGCTAAGCCCGAAGGC
32633962 AATTGTGCGAATT
66 AATTGTGCGAATT
* * ** *
32633975 GTGATATCCGGGCTAAGCTCGAAGGCAATTGTGCGAGTTATGATATTCGGGCTAAGCCCGAAGGC
1 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATATACGGGCTAAGCCCGAAGGC
*
32634040 AATTGTGCGAGTT
66 AATTGTGCGAATT
* ** * *
32634053 GTGATACCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTACCATA-ACGGGCTATGTCCCGAAG
1 GTGATACCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATATACGGGCTAAG-CCCGAAG
32634117 G
64 G
32634118 TGTTTGAACG
Statistics
Matches: 125, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
78 95 0.76
79 30 0.24
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (78 bp):
GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATATACGGGCTAAGCCCGAAGGC
AATTGTGCGAATT
Found at i:32642893 original size:13 final size:13
Alignment explanation
Indices: 32642875--32642900 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32642865 AAAAAAACAC
32642875 AATCTGATTCCTA
1 AATCTGATTCCTA
32642888 AATCTGATTCCTA
1 AATCTGATTCCTA
32642901 TTATATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
AATCTGATTCCTA
Found at i:32650759 original size:14 final size:14
Alignment explanation
Indices: 32650740--32650768 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32650730 AATCGGCCAG
32650740 ACGAGATGTATCTA
1 ACGAGATGTATCTA
32650754 ACGAGATGTATCTA
1 ACGAGATGTATCTA
32650768 A
1 A
32650769 GTTACAACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (14 bp):
ACGAGATGTATCTA
Found at i:32653990 original size:27 final size:26
Alignment explanation
Indices: 32653923--32654029 Score: 81
Period size: 27 Copynumber: 4.0 Consensus size: 26
32653913 AATACTATAT
* *
32653923 ATGTGGAAGTCCGT-AAGGACTATTTGAA
1 ATGTGAAAGTCCGTCAA-GACTATCT--A
* *
32653951 ATGTGGGAAGTCCATCAAGACTATCTA
1 ATGT-GAAAGTCCGTCAAGACTATCTA
* * *
32653978 ATGTGAAAGGTCCGCCAAGGCTATCTT
1 ATGTGAAA-GTCCGTCAAGACTATCTA
* *
32654005 TTGTGGAAGTCCGTCAAGACTATCT
1 ATGTGAAAGTCCGTCAAGACTATCT
32654030 TTTATGGAAG
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
26 18 0.28
27 25 0.38
28 4 0.06
29 16 0.25
30 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
ATGTGAAAGTCCGTCAAGACTATCTA
Found at i:32654027 original size:26 final size:26
Alignment explanation
Indices: 32653956--32654041 Score: 100
Period size: 26 Copynumber: 3.3 Consensus size: 26
32653946 TTGAAATGTG
* **
32653956 GGAAGTCCATCAAGACTATCTAATGT
1 GGAAGTCCGTCAAGACTATCTTTTGT
* * *
32653982 GAAAGGTCCGCCAAGGCTATCTTTTGT
1 GGAA-GTCCGTCAAGACTATCTTTTGT
*
32654009 GGAAGTCCGTCAAGACTATCTTTTAT
1 GGAAGTCCGTCAAGACTATCTTTTGT
32654035 GGAAGTC
1 GGAAGTC
32654042 TGTTAGGACT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
26 29 0.59
27 20 0.41
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
GGAAGTCCGTCAAGACTATCTTTTGT
Found at i:32654097 original size:27 final size:27
Alignment explanation
Indices: 32654065--32654121 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
32654055 TGAAATACGA
* *
32654065 AAGGTCGATCAAGACTATCTTATGTGG
1 AAGGTCGACCAAGACTATCTTATATGG
* * *
32654092 AAGGTCTACCAGGACTATCTTTTATGG
1 AAGGTCGACCAAGACTATCTTATATGG
32654119 AAG
1 AAG
32654122 ACCATGAGGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (27 bp):
AAGGTCGACCAAGACTATCTTATATGG
Found at i:32654120 original size:108 final size:108
Alignment explanation
Indices: 32653926--32654121 Score: 261
Period size: 108 Copynumber: 1.8 Consensus size: 108
32653916 ACTATATATG
** *
32653926 TGGAAGTCCGTAAGGACTATTTGAAATGTGGGAAGTCCATCAAGACTATCTAATGTGAAAGGTCC
1 TGGAAGTCCGTAAGGACTATTTGAAATGACGAAAGTCCATCAAGACTATCTAATGTGAAAGGTCC
* *
32653991 GCCAAGGCTATCTTTTGTGGAAGTCCGTCAAGACTATCTTTTA
66 ACCAAGGCTATCTTTTATGGAAGTCCGTCAAGACTATCTTTTA
* * * * *
32654034 TGGAAGTCTGTTAGGACTATTTGAAAT-ACGAAAGGTCGATCAAGACTATCTTATGTGGAAGGTC
1 TGGAAGTCCGTAAGGACTATTTGAAATGACGAAA-GTCCATCAAGACTATCTAATGTGAAAGGTC
*
32654098 TACC-AGGACTATCTTTTATGGAAG
65 CACCAAGG-CTATCTTTTATGGAAG
32654122 ACCATGAGGA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
107 6 0.08
108 69 0.92
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (108 bp):
TGGAAGTCCGTAAGGACTATTTGAAATGACGAAAGTCCATCAAGACTATCTAATGTGAAAGGTCC
ACCAAGGCTATCTTTTATGGAAGTCCGTCAAGACTATCTTTTA
Found at i:32659001 original size:38 final size:38
Alignment explanation
Indices: 32658948--32659362 Score: 400
Period size: 38 Copynumber: 11.1 Consensus size: 38
32658938 AATAACACCA
* * * *
32658948 GCACAGAGCCCGAATAACACCGACACAAAGCTTGCTAG
1 GCACAGAGCCTGAATATCACCGGCACAAAGCCTGCTAG
* *
32658986 GCACAGAGCCTGAATATCACCAGTACAAAGCCTGCTAG
1 GCACAGAGCCTGAATATCACCGGCACAAAGCCTGCTAG
* * * * *
32659024 GCATAGAGCCCGAATAACACCAGCACAAAGCCTGCTAA
1 GCACAGAGCCTGAATATCACCGGCACAAAGCCTGCTAG
* * * * *
32659062 GCATAGAGCCCGAATATCACTGGCACACAGCCTGGTAG
1 GCACAGAGCCTGAATATCACCGGCACAAAGCCTGCTAG
* *
32659100 GCAAAGAGCCTGAATATCACCGGCACAAAACCTGCT--
1 GCACAGAGCCTGAATATCACCGGCACAAAGCCTGCTAG
* * * *
32659136 -CATAAAGGCC--AA-AT-AAC-AC-CAAAGCCTGCTAG
1 GCACAGA-GCCTGAATATCACCGGCACAAAGCCTGCTAG
** * *
32659168 GCACAGAGCCCAAATATCACCGGCACATAGCCTACTAG
1 GCACAGAGCCTGAATATCACCGGCACAAAGCCTGCTAG
* *
32659206 GCACAAAGCCCT-AATATCACCTGCACAAAGCCTGCTAG
1 GCACAGAG-CCTGAATATCACCGGCACAAAGCCTGCTAG
* * * *
32659244 GCACAGAGCCTGAATAACACTGGCACAAACCCTGCAAG
1 GCACAGAGCCTGAATATCACCGGCACAAAGCCTGCTAG
* * * *
32659282 GCATAGAGCCTGAATATCACCGGCACACAGCTTGTTAG
1 GCACAGAGCCTGAATATCACCGGCACAAAGCCTGCTAG
* *
32659320 GCATAGAGCCTAAATATCACCGGCACAAAGCCTGCTAG
1 GCACAGAGCCTGAATATCACCGGCACAAAGCCTGCTAG
32659358 GCACA
1 GCACA
32659363 TGGCCCAAAT
Statistics
Matches: 307, Mismatches: 58, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
30 10 0.03
31 1 0.00
32 5 0.02
33 6 0.02
34 4 0.01
35 6 0.02
36 5 0.02
37 4 0.01
38 264 0.86
39 2 0.01
ACGTcount: A:0.35, C:0.31, G:0.20, T:0.14
Consensus pattern (38 bp):
GCACAGAGCCTGAATATCACCGGCACAAAGCCTGCTAG
Found at i:32659222 original size:144 final size:144
Alignment explanation
Indices: 32659011--32659278 Score: 376
Period size: 144 Copynumber: 1.9 Consensus size: 144
32659001 ATCACCAGTA
* * * * *
32659011 CAAAGCCTGCTAGGCATAGAGCCCGAATAACACCAGCACAAAGCCTGCTAAGCATAGAGCCCGAA
1 CAAAGCCTGCTAGGCACAGAGCCCAAATAACACCAGCACAAAGCCTACTAAGCACAAAGCCCGAA
* * *
32659076 TATCA-CTGGCACACAGCCTGGTAGGCAAAGAGCCTGAATATCACCGGCACAAAACCTGCTCATA
66 TATCACCT-GCACAAAGCCTGCTAGGCAAAGAGCCTGAATAACACCGGCACAAAACCTGCTCATA
32659140 AAGGCCAAATAACAC
130 AAGGCCAAATAACAC
* * * * *
32659155 CAAAGCCTGCTAGGCACAGAGCCCAAATATCACCGGCACATAGCCTACTAGGCACAAAGCCCTAA
1 CAAAGCCTGCTAGGCACAGAGCCCAAATAACACCAGCACAAAGCCTACTAAGCACAAAGCCCGAA
* * *
32659220 TATCACCTGCACAAAGCCTGCTAGGCACAGAGCCTGAATAACACTGGCACAAACCCTGC
66 TATCACCTGCACAAAGCCTGCTAGGCAAAGAGCCTGAATAACACCGGCACAAAACCTGC
32659279 AAGGCATAGA
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
144 105 0.98
145 2 0.02
ACGTcount: A:0.35, C:0.32, G:0.19, T:0.13
Consensus pattern (144 bp):
CAAAGCCTGCTAGGCACAGAGCCCAAATAACACCAGCACAAAGCCTACTAAGCACAAAGCCCGAA
TATCACCTGCACAAAGCCTGCTAGGCAAAGAGCCTGAATAACACCGGCACAAAACCTGCTCATAA
AGGCCAAATAACAC
Found at i:32659234 original size:106 final size:106
Alignment explanation
Indices: 32659049--32659355 Score: 280
Period size: 106 Copynumber: 2.8 Consensus size: 106
32659039 AACACCAGCA
* * * **
32659049 CAAAGCCTGCTAAGCATAGAGCCCGAATATCACTGGCACACAGCCTGGTAGGCAAAGAGCCTGAA
1 CAAAGCCTGCTAAGCACAGAGCCCAAATATCACCGGCACACAGCCTACTAGGCAAAGAGCCTGAA
32659114 TATCACCGGCACAAAACCTGCTCATAAAGGCCAAATAACAC
66 TATCACCGGCACAAAACCTGCTCATAAAGGCCAAATAACAC
* *
32659155 CAAAGCCTGCTAGGCACAGAGCCCAAATATCACCGGCACATAGCCTACTAGGCACAA-AGCCCT-
1 CAAAGCCTGCTAAGCACAGAGCCCAAATATCACCGGCACACAGCCTACTAGGCA-AAGAG-CCTG
* * * * *
32659218 AATATCACCTGCACAAAGCCTGCT-AGGCACAGAGCCTGAATAACACTGGC
64 AATATCACCGGCACAAAACCTGCTCA--TAAAG-GCC-AAATAACA----C
* * ** * ** * *
32659268 ACAAACCCTGC-AAGGCATAGAGCCTGAATATCACCGGCACACAGCTTGTTAGGCATAGAGCCTA
1 -CAAAGCCTGCTAA-GCACAGAGCCCAAATATCACCGGCACACAGCCTACTAGGCAAAGAGCCTG
*
32659332 AATATCACCGGCACAAAGCCTGCT
64 AATATCACCGGCACAAAACCTGCT
32659356 AGGCACATGG
Statistics
Matches: 164, Mismatches: 23, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
105 1 0.01
106 71 0.43
107 8 0.05
108 3 0.02
109 7 0.04
113 6 0.04
114 68 0.41
ACGTcount: A:0.35, C:0.31, G:0.20, T:0.15
Consensus pattern (106 bp):
CAAAGCCTGCTAAGCACAGAGCCCAAATATCACCGGCACACAGCCTACTAGGCAAAGAGCCTGAA
TATCACCGGCACAAAACCTGCTCATAAAGGCCAAATAACAC
Found at i:32659292 original size:182 final size:182
Alignment explanation
Indices: 32658973--32659308 Score: 483
Period size: 182 Copynumber: 1.8 Consensus size: 182
32658963 AACACCGACA
* ** * * * *
32658973 CAAAGCTTGCTAGGCACAGAGCCTGAATATCACCAGTACAAAGCCTGCTAGGCATAGAGCCCGAA
1 CAAAGCCTGCTAGGCACAGAGCCCAAATATCACCAGCACAAAGCCTACTAGGCACAAAGCCCGAA
* * * * **
32659038 TAACACCAGCACAAAGCCTGCTAAGCATAGAGCCCGAATATCACTGGCACACAGCCTGGTAGGCA
66 TAACACCAGCACAAAGCCTGCTAAGCACAGAGCCCGAATAACACTGGCACAAACCCTGCAAGGCA
32659103 AAGAGCCTGAATATCACCGGCACAAAACCTGCTCATAAAGGCCAAATAACAC
131 AAGAGCCTGAATATCACCGGCACAAAACCTGCTCATAAAGGCCAAATAACAC
* * *
32659155 CAAAGCCTGCTAGGCACAGAGCCCAAATATCACCGGCACATAGCCTACTAGGCACAAAGCCCTAA
1 CAAAGCCTGCTAGGCACAGAGCCCAAATATCACCAGCACAAAGCCTACTAGGCACAAAGCCCGAA
* * * *
32659220 TATCACCTGCACAAAGCCTGCTAGGCACAGAGCCTGAATAACACTGGCACAAACCCTGCAAGGCA
66 TAACACCAGCACAAAGCCTGCTAAGCACAGAGCCCGAATAACACTGGCACAAACCCTGCAAGGCA
*
32659285 TAGAGCCTGAATATCACCGGCACA
131 AAGAGCCTGAATATCACCGGCACA
32659309 CAGCTTGTTA
Statistics
Matches: 133, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
182 133 1.00
ACGTcount: A:0.35, C:0.31, G:0.20, T:0.14
Consensus pattern (182 bp):
CAAAGCCTGCTAGGCACAGAGCCCAAATATCACCAGCACAAAGCCTACTAGGCACAAAGCCCGAA
TAACACCAGCACAAAGCCTGCTAAGCACAGAGCCCGAATAACACTGGCACAAACCCTGCAAGGCA
AAGAGCCTGAATATCACCGGCACAAAACCTGCTCATAAAGGCCAAATAACAC
Found at i:32659330 original size:220 final size:220
Alignment explanation
Indices: 32658948--32659355 Score: 595
Period size: 220 Copynumber: 1.9 Consensus size: 220
32658938 AATAACACCA
* * * * *
32658948 GCACAGAGCCCGAATAACACCGACACAAAGCTTGCTAGGCACAGAGCCTGAATATCACCAGTACA
1 GCACAGAGCCCAAATAACACCGACACAAAGCCTACTAGGCACAAAGCCTGAATATCACCAGCACA
* *
32659013 AAGCCTGCTAGGCATAGAGCCCGAATAACACCAGCACAAAGCCTGCTAAGCATAGAGCCCGAATA
66 AAGCCTGCTAGGCACAGAGCCCGAATAACACCAGCACAAACCCTGCTAAGCATAGAGCCCGAATA
* *
32659078 TCACTGGCACACAGCCTGGTAGGCAAAGAGCCTGAATATCACCGGCACAAAACCTGCTCATAAAG
131 TCACCGGCACACAGCCTGGTAGGCAAAGAGCCTAAATATCACCGGCACAAAACCTGCTCATAAAG
32659143 GCCAAATAACACCAAAGCCTGCTAG
196 GCCAAATAACACCAAAGCCTGCTAG
* * * *
32659168 GCACAGAGCCCAAATATCACCGGCACATAGCCTACTAGGCACAAAGCCCT-AATATCACCTGCAC
1 GCACAGAGCCCAAATAACACCGACACAAAGCCTACTAGGCACAAAG-CCTGAATATCACCAGCAC
* ** *
32659232 AAAGCCTGCTAGGCACAGAGCCTGAATAACACTGGCACAAACCCTGC-AAGGCATAGAGCCTGAA
65 AAAGCCTGCTAGGCACAGAGCCCGAATAACACCAGCACAAACCCTGCTAA-GCATAGAGCCCGAA
* * * *
32659296 TATCACCGGCACACAGCTTGTTAGGCATAGAGCCTAAATATCACCGGCACAAAGCCTGCT
129 TATCACCGGCACACAGCCTGGTAGGCAAAGAGCCTAAATATCACCGGCACAAAACCTGCT
32659356 AGGCACATGG
Statistics
Matches: 165, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
219 2 0.01
220 160 0.97
221 3 0.02
ACGTcount: A:0.35, C:0.31, G:0.20, T:0.14
Consensus pattern (220 bp):
GCACAGAGCCCAAATAACACCGACACAAAGCCTACTAGGCACAAAGCCTGAATATCACCAGCACA
AAGCCTGCTAGGCACAGAGCCCGAATAACACCAGCACAAACCCTGCTAAGCATAGAGCCCGAATA
TCACCGGCACACAGCCTGGTAGGCAAAGAGCCTAAATATCACCGGCACAAAACCTGCTCATAAAG
GCCAAATAACACCAAAGCCTGCTAG
Found at i:32661458 original size:2 final size:2
Alignment explanation
Indices: 32661451--32661486 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
32661441 AGTTGTAAAG
32661451 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32661487 GATGCCGTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32661810 original size:43 final size:43
Alignment explanation
Indices: 32661650--32661808 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
32661640 TATGTGTTAT
* * *
32661650 CGTGTAAGATCACGTCTTGGATGTTGGCATCGAT-TTGTGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTA
* * * *
32661694 CGTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
*
32661736 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATTGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTA
*
32661779 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
32661809 TGTATGAGCT
Statistics
Matches: 96, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
42 30 0.31
43 37 0.39
44 29 0.30
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:32666259 original size:63 final size:64
Alignment explanation
Indices: 32666179--32666361 Score: 194
Period size: 66 Copynumber: 2.8 Consensus size: 64
32666169 AGACATTATG
*
32666179 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
32666242 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
32666307 AA
63 AA
* * * *
32666309 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
32666362 CGAACTATAT
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 39 0.40
64 5 0.05
65 6 0.06
66 40 0.41
67 5 0.05
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:32667448 original size:2 final size:2
Alignment explanation
Indices: 32667441--32667465 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32667431 TCATGACATG
32667441 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
32667466 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32669996 original size:40 final size:39
Alignment explanation
Indices: 32669937--32670105 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 39
32669927 GGAATTTAGT
* * * *
32669937 CGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATGACAACACGCACAA-TGCCTTCGGGTCTTAGCC
* ** * **
32669977 CGGATTTGGTATCTTGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATGACAACACGCAC-AATGCCTTCGGGTCTTAGCC
32670017 CGGATATGACAACACGCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATGACAACACGCAC-AATGCCTTCGGGTCTTAGCC
* * *
32670057 CGGATAT-A-ATCACTAGCATAAATGCCTTCGGGACTTAGCC
1 CGGATATGACAACAC--GCA-CAATGCCTTCGGGTCTTAGCC
32670097 CGGATATGA
1 CGGATATGA
32670106 TTCAAATGCT
Statistics
Matches: 105, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
38 4 0.04
39 1 0.01
40 97 0.92
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CGGATATGACAACACGCACAATGCCTTCGGGTCTTAGCC
Found at i:32670080 original size:80 final size:80
Alignment explanation
Indices: 32669937--32670105 Score: 216
Period size: 80 Copynumber: 2.1 Consensus size: 80
32669927 GGAATTTAGT
* * * ** *
32669937 CGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTATCTTGCACAAATGC
1 CGGATATGACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATATCTAGCACAAATGC
*
32670002 CTTCGGGTCTTAGCC
66 CTTCGGGACTTAGCC
* * *
32670017 CGGATATGACAACACGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCA-CTAGCATAAAT
1 CGGATATGACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAAT-ATCTAGCACAAAT
32670080 GCCTTCGGGACTTAGCC
64 GCCTTCGGGACTTAGCC
32670097 CGGATATGA
1 CGGATATGA
32670106 TTCAAATGCT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 74 0.96
81 3 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CGGATATGACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATATCTAGCACAAATGC
CTTCGGGACTTAGCC
Found at i:32671952 original size:43 final size:42
Alignment explanation
Indices: 32671874--32672045 Score: 129
Period size: 43 Copynumber: 4.0 Consensus size: 42
32671864 AGCTCGTACA
* * *
32671874 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ATGTCCTAGACAG-GGTCTTACACGAAATCAAATATCG
*
32671917 ATGCCATTGTCCTAGACAGGGTCCTACACGAAATCAAATA-C-
1 ATGCCA-TGTCCTAGACAGGGTCTTACACGAAATCAAATATCG
* *
32671958 AGTGCCGATGTCCTAGACATGGTCTTACACGTAAATCATAA-GTCG
1 A-TGCC-ATGTCCTAGACAGGGTCTTACACG-AAATCA-AATATCG
* * * * *
32672003 ATGCCAACGTCCCAGAC-GTGGTCTTACATGAAAACACATATCG
1 ATGCC-ATGTCCTAGACAG-GGTCTTACACGAAATCAAATATCG
32672046 GATCCTATGT
Statistics
Matches: 104, Mismatches: 15, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
41 1 0.01
42 28 0.27
43 47 0.45
44 27 0.26
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCATGTCCTAGACAGGGTCTTACACGAAATCAAATATCG
Found at i:32686169 original size:43 final size:42
Alignment explanation
Indices: 32686122--32686213 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
32686112 TCCCAGACGT
*
32686122 GGTCTTAAATGTAATCAAATATCGATGCC-ACTGTCCTAGACAG
1 GGTCTTAAATGAAATCAAATA-CGATGCCGA-TGTCCTAGACAG
** *
32686165 GGTCTTTCATGAAATCAAATACGATGCCGATGTCCTAGACAT
1 GGTCTTAAATGAAATCAAATACGATGCCGATGTCCTAGACAG
32686207 GGTCTTA
1 GGTCTTA
32686214 CACGTAAATC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 24 0.56
43 19 0.44
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (42 bp):
GGTCTTAAATGAAATCAAATACGATGCCGATGTCCTAGACAG
Found at i:32686223 original size:43 final size:42
Alignment explanation
Indices: 32686111--32686261 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 42
32686101 CAATGCCAAC
* * *
32686111 GTCCCAGACGTGGTCTTAAATGT-AATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATA-CGATGCCA-T
* * * *
32686154 GTCCTAGACAGGGTCTTTCATG-AAATCAAATACGATGCCGAT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATACGATGCC-AT
* * *
32686196 GTCCTAGACATGGTCTTACACGTAAATCATAAGT-CAATGCCAAC
1 GTCCCAGACATGGTCTTACACGTAAATCA-AA-TACGATGCC-AT
32686240 GTCCCAGACATGGTCTTACACG
1 GTCCCAGACATGGTCTTACACG
32686262 AAAACACATA
Statistics
Matches: 91, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 27 0.30
43 33 0.36
44 30 0.33
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAAATCAAATACGATGCCAT
Found at i:32690144 original size:17 final size:18
Alignment explanation
Indices: 32690122--32690157 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
32690112 GGTTTACCCG
32690122 TGTGGGGCCCACA-GGCC
1 TGTGGGGCCCACACGGCC
*
32690139 TGTGGGTCCCACACGGCC
1 TGTGGGGCCCACACGGCC
32690157 T
1 T
32690158 ATTTCGGCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.11, C:0.36, G:0.36, T:0.17
Consensus pattern (18 bp):
TGTGGGGCCCACACGGCC
Found at i:32695066 original size:40 final size:40
Alignment explanation
Indices: 32694748--32695065 Score: 458
Period size: 40 Copynumber: 8.0 Consensus size: 40
32694738 AATTTCACAT
* * *
32694748 CACCAGCATGATTGCTCTTC-GGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
32694787 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * * *
32694827 CTCTAGCACAAATGCTCTTTGAGACGTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
32694867 CACCAGCACAAATGCTCTTCGGGACTTAGCCCGAATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
32694907 CACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
32694947 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
32694987 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
32695027 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
32695066 TATAACTCTC
Statistics
Matches: 249, Mismatches: 29, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
39 18 0.07
40 231 0.93
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:32696386 original size:37 final size:37
Alignment explanation
Indices: 32696327--32696435 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
32696317 AGATCAGATG
* *
32696327 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
32696364 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
32696401 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
32696436 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:32696706 original size:48 final size:48
Alignment explanation
Indices: 32696582--32697263 Score: 1132
Period size: 48 Copynumber: 14.0 Consensus size: 48
32696572 ACACATCGCC
*
32696582 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
32696632 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
32696680 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
*
32696732 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32696780 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
32696828 TACATATTTCACATTAGCCATTCGGCTTTACCGCATATCCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
32696876 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
32696924 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC------A
*
32696978 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
32697026 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32697074 TACATATTTCACCTTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
32697122 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
32697170 TACATACTTCACGTTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32697218 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
32697264 TATGCATCAA
Statistics
Matches: 598, Mismatches: 22, Indels: 26
0.93 0.03 0.04
Matches are distributed among these distances:
48 460 0.77
49 2 0.00
50 42 0.07
52 47 0.08
54 47 0.08
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:32697016 original size:246 final size:244
Alignment explanation
Indices: 32696582--32697263 Score: 1185
Period size: 246 Copynumber: 2.8 Consensus size: 244
32696572 ACACATCGCC
* *
32696582 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
*
32696647 -GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
64 AG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
32696711 CACATATACATATCTCATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
128 CACATATACATATCTCATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
*
32696776 CTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
193 CTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
32696828 TACATATTTCACATTAGCCATTCGGCTTTACCGCATATCCATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
32696893 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
32696958 ATATACATATCTCATATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
131 ATATACATATCTC--ATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
32697023 TCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
194 TCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32697074 TACATATTTCACCTTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* *
32697139 CCATTCGGCTTTACCACATATACATATCTCATACATACTTCACGTTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
32697204 ATATACATATCTC----ATACATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCT
131 ATATACATATCTCATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
32697264 TATGCATCAA
Statistics
Matches: 420, Mismatches: 13, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
240 45 0.11
244 92 0.22
245 1 0.00
246 282 0.67
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (244 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
ATATACATATCTCATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:32704692 original size:29 final size:29
Alignment explanation
Indices: 32704660--32704794 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
32704650 ATACCCTTCG
** * *
32704660 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * *
32704689 AGCTTGCACACATAGTGTCATAT-TTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
32704717 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
32704746 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
32704775 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
32704795 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
28 23 0.25
29 70 0.75
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:32704745 original size:57 final size:58
Alignment explanation
Indices: 32704635--32704793 Score: 176
Period size: 57 Copynumber: 2.8 Consensus size: 58
32704625 AATTTAAGCC
* *** * * ** * *
32704635 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * *
32704693 TGCACACATAGTGTCATAT-TTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
32704750 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
32704794 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
57 45 0.54
58 38 0.46
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:32712701 original size:25 final size:25
Alignment explanation
Indices: 32712668--32712719 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
32712658 TGATAAGAAT
32712668 GAAAATGAATGAGTGATACTTATGA
1 GAAAATGAATGAGTGATACTTATGA
32712693 GAAAATGAATGAGTGATACTTATGA
1 GAAAATGAATGAGTGATACTTATGA
32712718 GA
1 GA
32712720 GTAACTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.44, C:0.04, G:0.25, T:0.27
Consensus pattern (25 bp):
GAAAATGAATGAGTGATACTTATGA
Found at i:32716123 original size:23 final size:23
Alignment explanation
Indices: 32716097--32716255 Score: 187
Period size: 23 Copynumber: 6.9 Consensus size: 23
32716087 ATATAGTCGC
* *
32716097 AGCTATCACTGTAACGTAGCCAA
1 AGCTACCACTGTAATGTAGCCAA
*
32716120 AGCTACCACTGTATTGTAGCCAA
1 AGCTACCACTGTAATGTAGCCAA
* *
32716143 AGCTACCACTGTATTGTAGCCGA
1 AGCTACCACTGTAATGTAGCCAA
*
32716166 AGCTACCACTG-AGATGTAGCCGA
1 AGCTACCACTGTA-ATGTAGCCAA
* * *
32716189 AGTTACCACTGTATTGTAGCCGA
1 AGCTACCACTGTAATGTAGCCAA
32716212 AGCTACCACTG-AGATGTAGCCAA
1 AGCTACCACTGTA-ATGTAGCCAA
* *
32716235 AGCTACCACTATATTGTAGCC
1 AGCTACCACTGTAATGTAGCC
32716256 TATAGATTCC
Statistics
Matches: 120, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
22 2 0.02
23 116 0.97
24 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (23 bp):
AGCTACCACTGTAATGTAGCCAA
Found at i:32716147 original size:46 final size:46
Alignment explanation
Indices: 32716097--32716255 Score: 230
Period size: 46 Copynumber: 3.5 Consensus size: 46
32716087 ATATAGTCGC
* ** * *
32716097 AGCTATCACTGTAACGTAGCCAAAGCTACCACTGTA-TTGTAGCCAA
1 AGCTACCACTGTATTGTAGCCGAAGCTACCACTG-AGATGTAGCCAA
*
32716143 AGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGA
1 AGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCAA
*
32716189 AGTTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCAA
1 AGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCAA
*
32716235 AGCTACCACTATATTGTAGCC
1 AGCTACCACTGTATTGTAGCC
32716256 TATAGATTCC
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 101 0.99
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
AGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCAA
Found at i:32724936 original size:27 final size:27
Alignment explanation
Indices: 32724905--32725574 Score: 823
Period size: 27 Copynumber: 24.8 Consensus size: 27
32724895 TTAGTTTACC
* *
32724905 AATTACTGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
** ** *
32724932 AATTACCGTTTTACCCTTAATTTGTAA
1 AATTACCGTTTTACCCTCGATTTACAG
* *
32724959 AATTACCGTTTTACCCTCGATTTATAT
1 AATTACCGTTTTACCCTCGATTTACAG
* ** *
32724986 AATTACTGTTTTACCCTCGATTTGTAA
1 AATTACCGTTTTACCCTCGATTTACAG
*
32725013 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
32725040 AATTACCGTTTTACCCTC-ACTTTACAG
1 AATTACCGTTTTACCCTCGA-TTTACAG
32725067 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
32725094 AATTACCGTTTTACCCT-TAGTTTACAG
1 AATTACCGTTTTACCCTCGA-TTTACAG
32725121 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
32725148 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCGTTTTACCCTCGA-TTTACAG
** *
32725175 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
32725202 AATTATCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
32725229 AATTACCGTTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAG
*
32725256 AATTACCGTTTTACCCTCGCTTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
** *
32725283 AATTACTATTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAG
*
32725310 AATTACCATTTTACCCTC-AGTTTACAG
1 AATTACCGTTTTACCCTCGA-TTTACAG
*
32725337 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
** *
32725364 AATTACCGTTTTACCCTCGATTTGTAA
1 AATTACCGTTTTACCCTCGATTTACAG
* *
32725391 AATTACTGTTTTACCCTTGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
* * *
32725418 AATTACTGGTTTACCCTC-AGTTTACAA
1 AATTACCGTTTTACCCTCGA-TTTACAG
* ** *
32725445 AATTATCGTTTTACCCTCGATTTGTAA
1 AATTACCGTTTTACCCTCGATTTACAG
* * *
32725472 AATTACTGTTTTACCCTTGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
* *
32725499 AATTACTAG-TTTACCCTC-AGTTTACAA
1 AATTAC-CGTTTTACCCTCGA-TTTACAG
*
32725526 AATTATCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
32725553 AATTACCGTTTTACCCTTGATT
1 AATTACCGTTTTACCCTCGATT
32725575 GTGAAATTAC
Statistics
Matches: 561, Mismatches: 68, Indels: 28
0.85 0.10 0.04
Matches are distributed among these distances:
26 7 0.01
27 547 0.98
28 7 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTACAG
Found at i:32725616 original size:27 final size:27
Alignment explanation
Indices: 32725579--32725774 Score: 257
Period size: 27 Copynumber: 7.3 Consensus size: 27
32725569 TTGATTGTGA
*
32725579 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
32725606 AGTTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
32725633 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32725660 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32725687 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32725714 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
32725741 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
32725768 AATTACC
1 AATTACC
32725775 ATTTTGCCCC
Statistics
Matches: 145, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:32726010 original size:27 final size:26
Alignment explanation
Indices: 32725972--32726054 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
32725962 ACGGAGAAGC
*
32725972 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
32725999 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
32726025 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
32726052 GTT
1 GTT
32726055 GACCGATCGA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:32726174 original size:22 final size:22
Alignment explanation
Indices: 32726142--32726200 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
32726132 CCCGTTATTA
*
32726142 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
32726164 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
32726186 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
32726201 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:32726403 original size:27 final size:26
Alignment explanation
Indices: 32726373--32726437 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
32726363 TTTGTGACAT
*
32726373 TATCTGATTCTGGTGGCTCTGCCACAA
1 TATCTG-TTCTGGTGACTCTGCCACAA
* *
32726400 TATCTGTATCTGGTGACTCTGTCACGA
1 TATCTGT-TCTGGTGACTCTGCCACAA
32726427 TAT-TGTTCTGG
1 TATCTGTTCTGG
32726438 CAGCATGCTG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.15
26 4 0.12
27 25 0.74
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
TATCTGTTCTGGTGACTCTGCCACAA
Found at i:32726563 original size:6 final size:6
Alignment explanation
Indices: 32726554--32726655 Score: 104
Period size: 6 Copynumber: 16.8 Consensus size: 6
32726544 TTGCATTCAC
* *
32726554 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
32726603 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
32726651 ATTCT
1 ATTCT
32726656 CATTTTGTTC
Statistics
Matches: 81, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
5 6 0.07
6 68 0.84
7 5 0.06
8 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:32726617 original size:30 final size:30
Alignment explanation
Indices: 32726554--32726675 Score: 167
Period size: 30 Copynumber: 4.1 Consensus size: 30
32726544 TTGCATTCAC
*
32726554 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
32726585 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
32726615 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* * *
32726645 ATTCTGATTCTCATTTTGTT-CCAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
32726674 AT
1 AT
32726676 AATGTTTCTT
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
29 10 0.12
30 52 0.63
31 21 0.25
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:32728623 original size:27 final size:27
Alignment explanation
Indices: 32728592--32729125 Score: 702
Period size: 27 Copynumber: 19.8 Consensus size: 27
32728582 TTAGTTTACC
* *
32728592 AATTACTGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
** ** *
32728619 AATTACCGTTTTACCCTTAATTTGTAA
1 AATTACCGTTTTACCCTCGATTTACAG
*
32728646 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
* ** *
32728673 AATTACTGTTTTACCCTCGATTTGTAA
1 AATTACCGTTTTACCCTCGATTTACAG
*
32728700 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
32728727 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCGTTTTACCCTCGA-TTTACAG
32728754 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
32728781 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCGTTTTACCCTCGA-TTTACAG
** *
32728808 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
32728835 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
32728862 AATTACCGTTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAG
32728889 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
**
32728916 AATTACTATTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
32728943 AATTACCATTTTACCCTC-AGTTTACAG
1 AATTACCGTTTTACCCTCGA-TTTACAG
*
32728970 AATTACTGTTTTACCCTCGATTTACA-
1 AATTACCGTTTTACCCTCGATTTACAG
** *
32728996 AATTACCGTTTTACCCTCGATTTGTAA
1 AATTACCGTTTTACCCTCGATTTACAG
* *
32729023 AATTACTGTTTTACCCTTGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
** *
32729050 AATTATTAG-TTTACCCTC-AGTTTACAA
1 AATTA-CCGTTTTACCCTCGA-TTTACAG
*
32729077 AATTATCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
32729104 AATTACCGTTTTACCCTTGATT
1 AATTACCGTTTTACCCTCGATT
32729126 GTGAAATTAC
Statistics
Matches: 451, Mismatches: 45, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
26 29 0.06
27 417 0.92
28 5 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTACAG
Found at i:32729167 original size:27 final size:27
Alignment explanation
Indices: 32729130--32729325 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
32729120 TTGATTGTGA
*
32729130 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
32729157 AGTTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
32729184 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32729211 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32729238 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32729265 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
32729292 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
32729319 AATTACC
1 AATTACC
32729326 ATTTTGCCCC
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:32729562 original size:27 final size:26
Alignment explanation
Indices: 32729524--32729606 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
32729514 CGGAGGAAGC
*
32729524 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
32729551 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
32729577 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
32729604 GTT
1 GTT
32729607 GACCGATCGA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:32729937 original size:27 final size:27
Alignment explanation
Indices: 32729923--32729988 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
32729913 TTTGCGACAT
32729923 TATCTG-ATTCTGGTGGCTCTGCCACAA
1 TATCTGTA-TCTGGTGGCTCTGCCACAA
* * *
32729950 TATCTGTATCTGGTGACTCTGTCACGA
1 TATCTGTATCTGGTGGCTCTGCCACAA
32729977 TATCTGT-TCTGG
1 TATCTGTATCTGG
32729989 CAGCCATGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 5 0.14
27 29 0.83
28 1 0.03
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
TATCTGTATCTGGTGGCTCTGCCACAA
Found at i:32730115 original size:6 final size:6
Alignment explanation
Indices: 32730106--32730267 Score: 142
Period size: 6 Copynumber: 26.8 Consensus size: 6
32730096 TTGCATTCAC
* *
32730106 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
32730155 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG
*
32730203 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
32730251 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
32730268 CATTTTGGTT
Statistics
Matches: 129, Mismatches: 10, Indels: 34
0.75 0.06 0.20
Matches are distributed among these distances:
5 12 0.09
6 106 0.82
7 7 0.05
8 4 0.03
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:32730288 original size:30 final size:30
Alignment explanation
Indices: 32730106--32730267 Score: 265
Period size: 30 Copynumber: 5.4 Consensus size: 30
32730096 TTGCATTCAC
*
32730106 ATTCTGATTCTGATTCTGTCACCTAAT-TCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATAT-TG
32730137 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATATTG
32730167 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATATTG
32730197 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATATTG
*
32730227 ATTCTGATTCTGATTCTGTTACTGAT-TCTG
1 ATTCTGATTCTGATTCTGTTACTAATAT-TG
32730257 ATTCTGATTCT
1 ATTCTGATTCT
32730268 CATTTTGGTT
Statistics
Matches: 127, Mismatches: 2, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
29 1 0.01
30 105 0.83
31 21 0.17
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATATTG
Found at i:32731449 original size:11 final size:11
Alignment explanation
Indices: 32731433--32731460 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
32731423 GGAATTAGTA
32731433 TGTTTTAAGTG
1 TGTTTTAAGTG
32731444 TGTTTTAAGTG
1 TGTTTTAAGTG
32731455 TGTTTT
1 TGTTTT
32731461 GGCCATATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.25, T:0.61
Consensus pattern (11 bp):
TGTTTTAAGTG
Found at i:32735452 original size:40 final size:40
Alignment explanation
Indices: 32735359--32735576 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
32735349 AAGCCAAGTA
* * *
32735359 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
32735397 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32735437 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
32735477 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
32735517 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGTGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
32735558 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32735577 TTATCATCCA
Statistics
Matches: 164, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
38 12 0.07
39 18 0.11
40 107 0.65
41 24 0.15
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32741232 original size:27 final size:27
Alignment explanation
Indices: 32741068--32741220 Score: 245
Period size: 27 Copynumber: 5.7 Consensus size: 27
32741058 ACATCACTAG
*
32741068 GGGCAAAATAGTCATCTTACCATATAA
1 GGGCAAAATAGTCATTTTACCATATAA
32741095 GGGCAAAATAGTCATTTTACCATATAA
1 GGGCAAAATAGTCATTTTACCATATAA
* *
32741122 GGGCAAAACAATCATTTTACCATATAA
1 GGGCAAAATAGTCATTTTACCATATAA
32741149 GGGCAAAATAGTCATTTTACCATATAA
1 GGGCAAAATAGTCATTTTACCATATAA
* *
32741176 GGGCAAAA-AATCATTTTACCACATAA
1 GGGCAAAATAGTCATTTTACCATATAA
*
32741202 GGGTAAAATAGTCATTTTA
1 GGGCAAAATAGTCATTTTA
32741221 TCGATTAAGG
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
26 23 0.20
27 93 0.80
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (27 bp):
GGGCAAAATAGTCATTTTACCATATAA
Found at i:32745973 original size:40 final size:39
Alignment explanation
Indices: 32745910--32746128 Score: 287
Period size: 40 Copynumber: 5.5 Consensus size: 39
32745900 CGAGCCTACA
* * *
32745910 GGTCTTT-AACCCGAATTCCATTCCAGCACGAAGCCTGCG
1 GGTCTTTAAACCCGGATACAATTCCAGCA-GAAGCCTGCG
*
32745949 GGTCTTTAAACCCGGATACAATTCCAGCATATAGCCTGCG
1 GGTCTTTAAACCCGGATACAATTCCAGCAGA-AGCCTGCG
* *
32745989 GGTCTTTAAACCCGGATACCATTCCAGCATGAAGCCTGCA
1 GGTCTTTAAACCCGGATACAATTCCAGCA-GAAGCCTGCG
*
32746029 GGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCG
1 GGTCTTTAAACCCGGATACAATTCCAGCA-GAAGCCTGCG
* * * *
32746069 AGTCTTTAAGCCCGGATACAATTCCAGCATATAGCCTGTG
1 GGTCTTTAAACCCGGATACAATTCCAGCAGA-AGCCTGCG
32746109 GGTCTTTAAACCCGGATACA
1 GGTCTTTAAACCCGGATACA
32746129 CACATTAAAT
Statistics
Matches: 161, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 9 0.06
40 151 0.94
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
GGTCTTTAAACCCGGATACAATTCCAGCAGAAGCCTGCG
Found at i:32746023 original size:80 final size:80
Alignment explanation
Indices: 32745910--32746128 Score: 318
Period size: 80 Copynumber: 2.8 Consensus size: 80
32745900 CGAGCCTACA
* * *
32745910 GGTCTTT-AACCCGAATTCCATTCCAGCACGAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
1 GGTCTTTAAACCCGGATACCATTCCAGCATGAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
32745974 AGCAT-ATAGCCTGCG
66 AGCATGA-AGCCTGCG
* *
32745989 GGTCTTTAAACCCGGATACCATTCCAGCATGAAGCCTGCAGGTCTTTAAGCCCGGATACAATTCC
1 GGTCTTTAAACCCGGATACCATTCCAGCATGAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
32746054 AGCATGAAGCCTGCG
66 AGCATGAAGCCTGCG
* * * *
32746069 AGTCTTTAAGCCCGGATACAATTCCAGCAT-ATAGCCTGTGGGTCTTTAAACCCGGATACA
1 GGTCTTTAAACCCGGATACCATTCCAGCATGA-AGCCTGCGGGTCTTTAAACCCGGATACA
32746129 CACATTAAAT
Statistics
Matches: 126, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
79 8 0.06
80 117 0.93
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GGTCTTTAAACCCGGATACCATTCCAGCATGAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
AGCATGAAGCCTGCG
Found at i:32746083 original size:120 final size:119
Alignment explanation
Indices: 32745902--32746127 Score: 371
Period size: 120 Copynumber: 1.9 Consensus size: 119
32745892 TTCTAACACG
* * *
32745902 AGCCTACAGGTCTTTAACCCGAATTCCATTCCAGCACGAAGCCTGCGGGTCTTTAAACCCGGATA
1 AGCCTACAGGTCTTTAACCCGAATACAATTCCAGCACGAAGCCTGCGAGTCTTTAAACCCGGATA
32745967 CAATTCCAGCATATAGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCATGA
66 CAATTCCAGCATATAGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCATGA
* * * *
32746021 AGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGAGTCTTTAAGCCCGGAT
1 AGCCTACAGGTCTTTAA-CCCGAATACAATTCCAGCACGAAGCCTGCGAGTCTTTAAACCCGGAT
*
32746086 ACAATTCCAGCATATAGCCTGTGGGTCTTTAAACCCGGATAC
65 ACAATTCCAGCATATAGCCTGCGGGTCTTTAAACCCGGATAC
32746128 ACACATTAAA
Statistics
Matches: 98, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
119 16 0.16
120 82 0.84
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (119 bp):
AGCCTACAGGTCTTTAACCCGAATACAATTCCAGCACGAAGCCTGCGAGTCTTTAAACCCGGATA
CAATTCCAGCATATAGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCATGA
Found at i:32749370 original size:38 final size:38
Alignment explanation
Indices: 32749319--32749401 Score: 157
Period size: 38 Copynumber: 2.2 Consensus size: 38
32749309 GGGTTTTAGG
32749319 TTTTCTTTATGTTTTGTATTCATTATTCTTCTGAGATA
1 TTTTCTTTATGTTTTGTATTCATTATTCTTCTGAGATA
*
32749357 TTTTCTTTATGTTTTGTATTCATTATTCTTCTGAGATG
1 TTTTCTTTATGTTTTGTATTCATTATTCTTCTGAGATA
32749395 TTTTCTT
1 TTTTCTT
32749402 CTATAATTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.16, C:0.11, G:0.11, T:0.63
Consensus pattern (38 bp):
TTTTCTTTATGTTTTGTATTCATTATTCTTCTGAGATA
Found at i:32754750 original size:9 final size:9
Alignment explanation
Indices: 32754736--32754762 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
32754726 ATTGCACAAA
32754736 ACACAAAAT
1 ACACAAAAT
32754745 ACACAAAAT
1 ACACAAAAT
32754754 ACACAAAAT
1 ACACAAAAT
32754763 TTCAAAGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.67, C:0.22, G:0.00, T:0.11
Consensus pattern (9 bp):
ACACAAAAT
Found at i:32759287 original size:22 final size:22
Alignment explanation
Indices: 32759259--32759300 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32759249 ATGATAAACA
32759259 GTAAGCTCCAAAGAGCTGAACG
1 GTAAGCTCCAAAGAGCTGAACG
**
32759281 GTAAGCTCCGTAGAGCTGAA
1 GTAAGCTCCAAAGAGCTGAA
32759301 ACAGAAATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (22 bp):
GTAAGCTCCAAAGAGCTGAACG
Found at i:32761117 original size:17 final size:18
Alignment explanation
Indices: 32761087--32761123 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
32761077 CTTGGCCCAT
32761087 TACAGTAACAGTAAA-AG
1 TACAGTAACAGTAAACAG
32761104 TACAGTAA-ACGTAAACAG
1 TACAGTAACA-GTAAACAG
32761122 TA
1 TA
32761124 TGCAAGTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.06
17 13 0.72
18 4 0.22
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (18 bp):
TACAGTAACAGTAAACAG
Found at i:32774547 original size:22 final size:22
Alignment explanation
Indices: 32774505--32774549 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
32774495 TCTGAGCTGA
*
32774505 TAAATGGTAAGCTCTGAAGAGC
1 TAAATGGTAAGCTCCGAAGAGC
*
32774527 TAAATGGTAAGCTCCGTAGAGC
1 TAAATGGTAAGCTCCGAAGAGC
32774549 T
1 T
32774550 GAAACAGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (22 bp):
TAAATGGTAAGCTCCGAAGAGC
Found at i:32774567 original size:29 final size:30
Alignment explanation
Indices: 32774534--32774590 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
32774524 AGCTAAATGG
* * *
32774534 TAAGCTCCGTAGAGCTGAAACAG-AAGCAA
1 TAAGCCCCGAAGAGCTAAAACAGTAAGCAA
*
32774563 TAAGCCCCGAATAGCTAAAACAGTAAGC
1 TAAGCCCCGAAGAGCTAAAACAGTAAGC
32774591 TCATACGAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 19 0.83
30 4 0.17
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.14
Consensus pattern (30 bp):
TAAGCCCCGAAGAGCTAAAACAGTAAGCAA
Found at i:32779461 original size:40 final size:40
Alignment explanation
Indices: 32779412--32779579 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
32779402 TCTTCGGAAT
* * *
32779412 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
32779451 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
32779491 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
32779531 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
32779571 TTAGCCCGG
1 TTAGCCCGG
32779580 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:32787760 original size:40 final size:40
Alignment explanation
Indices: 32787600--32787762 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 40
32787590 TCTTCGGAAT
* * *
32787600 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * * ** * *
32787639 TTAACCCGAATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
*
32787679 TTAGCCCGGATATAA-CAACTCG-A-AAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
32787717 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
32787757 TTAGCC
1 TTAGCC
32787763 TGGGTATCAT
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
38 34 0.34
39 6 0.06
40 60 0.60
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:32808914 original size:40 final size:40
Alignment explanation
Indices: 32808859--32809113 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
32808849 GATTGATAAT
32808859 CGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATATC
*
32808899 CGGGCTAAGTCCCGAAGGCATTTGT-CGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATATC
* *
32808938 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATATC
* *
32808978 CGGGCCAAGTCCCGAAGGCAA-TTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGG-AATTTGTGCGAGTTACTATATC
*
32809018 CGGGCTAAGTCCCGAAGGCAA-TTGTGCGAGTTACTATA-A
1 CGGGCTAAGTCCCGAAGG-AATTTGTGCGAGTTACTATATC
* * *
32809057 CGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTA-CTATATC
**
32809097 C-GGCTAAACCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
32809114 TACTTGGTTT
Statistics
Matches: 198, Mismatches: 12, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
38 3 0.02
39 83 0.42
40 111 0.56
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATATC
Found at i:32808990 original size:79 final size:80
Alignment explanation
Indices: 32808854--32809080 Score: 377
Period size: 79 Copynumber: 2.9 Consensus size: 80
32808844 ATTCGGATTG
* * *
32808854 ATAATCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
32808919 TTTGT-CGAGTTACT
66 TTTGTGCGAGTTACT
* *
32808933 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
32808998 ATTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
*
32809013 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA-CGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
32809077 TTTG
66 TTTG
32809081 AGCAAGTAGC
Statistics
Matches: 137, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
79 86 0.63
80 51 0.37
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:32809070 original size:119 final size:119
Alignment explanation
Indices: 32808854--32809080 Score: 377
Period size: 119 Copynumber: 1.9 Consensus size: 119
32808844 ATTCGGATTG
* * *
32808854 ATAATCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCCAAGTCCCGAAGGAATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
* *
32808919 TTTGTCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 ATTGTCGAGTTACTATATACGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
32808973 ATAACCGGGCCAAGTCCCGAAGGCAA-TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCCAAGTCCCGAAGG-AATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGC
32809037 AATTGTGCGAGTTACTATA-ACGGGCTAAGTCCCGAAGGCATTTG
65 AATTGT-CGAGTTACTATATACGGGCTAAGTCCCGAAGGCATTTG
32809081 AGCAAGTAGC
Statistics
Matches: 101, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
119 87 0.86
120 14 0.14
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
ATAACCGGGCCAAGTCCCGAAGGAATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
ATTGTCGAGTTACTATATACGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:32817229 original size:40 final size:40
Alignment explanation
Indices: 32816987--32817215 Score: 395
Period size: 40 Copynumber: 5.7 Consensus size: 40
32816977 ATTCGGATTG
32816987 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
32817027 ATATCCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
32817067 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
32817107 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
32817147 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
32817187 ATAACTGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
32817216 AGCAAGTAGC
Statistics
Matches: 180, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 180 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:32819569 original size:5 final size:6
Alignment explanation
Indices: 32819554--32819583 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
32819544 AAATCTGCTA
32819554 AAAAAT AAAAAT AAAAAT AAAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT -AAAAAT AAAAA
32819584 GTAGTTTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:32819570 original size:13 final size:12
Alignment explanation
Indices: 32819554--32819583 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
32819544 AAATCTGCTA
32819554 AAAAATAAAAAT
1 AAAAATAAAAAT
32819566 AAAAATAAAAAAT
1 AAAAAT-AAAAAT
32819579 AAAAA
1 AAAAA
32819584 GTAGTTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:32833767 original size:21 final size:20
Alignment explanation
Indices: 32833743--32833790 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
32833733 AAAGATTAAA
32833743 TTAAAATCAATAA-ATATATTT
1 TTAAAATC-ATAATATAT-TTT
*
32833764 TTAAATATCATAATTTATTTT
1 TTAAA-ATCATAATATATTTT
32833785 TTAAAA
1 TTAAAA
32833791 AATAAAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 17 0.71
22 6 0.25
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAAAATCATAATATATTTT
Found at i:32836475 original size:48 final size:48
Alignment explanation
Indices: 32836423--32836546 Score: 205
Period size: 48 Copynumber: 2.6 Consensus size: 48
32836413 GTCAGTGCCA
* *
32836423 ATGCCATGTCTCAGACATGGTTTTACACTAGCA-CACATATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GCATCACATATCAACGCCG
*
32836471 ATGCCATGTCCCAGACATGGTCTTACACTGGATCACATATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGCATCACATATCAACGCCG
32836519 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
32836547 AGGCTCTCAT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
47 2 0.03
48 70 0.97
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGCATCACATATCAACGCCG
Found at i:32839484 original size:22 final size:22
Alignment explanation
Indices: 32839459--32839511 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
32839449 GCACACACAA
*
32839459 CCATAATCAAGTTGGCACAGAG
1 CCATAATCAAGTTGGCACAAAG
* * *
32839481 CCAT-ATGTAGGTTGGCGCAAAG
1 CCATAAT-CAAGTTGGCACAAAG
32839503 CCATAATCA
1 CCATAATCA
32839512 GAATAATTGG
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
21 2 0.08
22 20 0.83
23 2 0.08
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (22 bp):
CCATAATCAAGTTGGCACAAAG
Found at i:32839712 original size:41 final size:41
Alignment explanation
Indices: 32839655--32839777 Score: 192
Period size: 41 Copynumber: 3.0 Consensus size: 41
32839645 AAAAGCCACC
32839655 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
* * *
32839696 GGTGGATCCCCGGTCGTCAAGCAACCACGCGATCCTCAATC
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
* * *
32839737 GGTGGATCCACAGTCATCAAGTAACCATGCGATCCTCAATT
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
32839778 TCTTCCTCTG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (41 bp):
GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
Found at i:32840066 original size:27 final size:27
Alignment explanation
Indices: 32840036--32840141 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 27
32840026 GGTAAATCTA
32840036 CAAACCAAGGGTATTTTAGTAATTTTG
1 CAAACCAAGGGTATTTTAGTAATTTTG
* *
32840063 CAAACCAATGGTATTTCT-GTAATTTTT
1 CAAACCAAGGGTATTT-TAGTAATTTTG
* * *
32840090 AAAAGTCAAGGGTATTTTTGTAATTTTG
1 CAAA-CCAAGGGTATTTTAGTAATTTTG
* * * *
32840118 TAAGCCAAAGGTATTTCAGTAATT
1 CAAACCAAGGGTATTTTAGTAATT
32840142 CTACCCTACA
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
27 43 0.67
28 21 0.33
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
CAAACCAAGGGTATTTTAGTAATTTTG
Found at i:32840160 original size:27 final size:26
Alignment explanation
Indices: 32840127--32840230 Score: 136
Period size: 27 Copynumber: 3.9 Consensus size: 26
32840117 GTAAGCCAAA
32840127 GGTATTTCAGTAATTCTACCCTACAG
1 GGTATTTCAGTAATTCTACCCTACAG
* *
32840153 GGACATTTCAGTAATTCTATCCTACAGG
1 GG-TATTTCAGTAATTCTACCCTACA-G
* *
32840181 GGTATTTCAATAATTCTACCCTAAAG
1 GGTATTTCAGTAATTCTACCCTACAG
* *
32840207 GGTATTTCAGTAATACTAGCCTAC
1 GGTATTTCAGTAATTCTACCCTAC
32840231 CGATATGAGA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 23 0.35
27 40 0.61
28 3 0.05
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (26 bp):
GGTATTTCAGTAATTCTACCCTACAG
Found at i:32840188 original size:54 final size:53
Alignment explanation
Indices: 32840127--32840230 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 53
32840117 GTAAGCCAAA
* * * *
32840127 GGTATTTCAGTAATTCTACCCTACAGGGACATTTCAGTAATTCTATCCTACAGG
1 GGTATTTCAATAATTCTACCCTAAAGGG-CATTTCAGTAATACTAGCCTACAGG
*
32840181 GGTATTTCAATAATTCTACCCTAAAGGGTATTTCAGTAATACTAGCCTAC
1 GGTATTTCAATAATTCTACCCTAAAGGGCATTTCAGTAATACTAGCCTAC
32840231 CGATATGAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 19 0.42
54 26 0.58
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (53 bp):
GGTATTTCAATAATTCTACCCTAAAGGGCATTTCAGTAATACTAGCCTACAGG
Found at i:32844576 original size:40 final size:39
Alignment explanation
Indices: 32844511--32844678 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 39
32844501 TCTTCGGAAT
* **
32844511 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * * *** *
32844550 TTAACCCGGTTTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
32844590 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
* * *
32844630 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGCC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
32844670 TTAGCCCGG
1 TTAGCCCGG
32844679 GTATCATTCA
Statistics
Matches: 105, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 99 0.94
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Found at i:32844638 original size:80 final size:80
Alignment explanation
Indices: 32844511--32844678 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 80
32844501 TCTTCGGAAT
* * * ** *
32844511 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGTTTTGGTAACTTGCAC
1 TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCAC
*
32844575 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGCC
** * *
32844590 TTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCA
1 TTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCA
*
32844654 TAAATGCCTTCGGGCC
65 CAAATGCCTTCGGGCC
32844670 TTAGCCCGG
1 TTAGCCCGG
32844679 GTATCATTCA
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
79 4 0.05
80 69 0.92
81 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCAC
AAATGCCTTCGGGCC
Found at i:32851326 original size:93 final size:93
Alignment explanation
Indices: 32851214--32851385 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32851204 GCCCATAAGT
* *
32851214 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32851279 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32851307 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32851372 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
32851386 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32851381 original size:46 final size:46
Alignment explanation
Indices: 32851206--32851381 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
32851196 TGTAACCCGC
* * *
32851206 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
32851252 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
32851302 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
32851345 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32851382 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:32855560 original size:40 final size:40
Alignment explanation
Indices: 32855441--32855606 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
32855431 TCTTCGGAAT
* * *
32855441 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
32855480 TTAACCCGG-TTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
32855519 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
32855559 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTC-GGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
32855598 TTAGCCCGG
1 TTAGCCCGG
32855607 GTATCATTCA
Statistics
Matches: 104, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 45 0.43
40 58 0.56
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:32855601 original size:79 final size:78
Alignment explanation
Indices: 32855432--32855606 Score: 192
Period size: 79 Copynumber: 2.2 Consensus size: 78
32855422 AACCGAGTCT
* * * **
32855432 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGTTTGGTA
1 CTTCGG-ACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGTATAATA
*
32855496 ACTTGCACAAATGC
65 ACTAGCACAAATGC
* ** *
32855510 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTC-GGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGG-TATAA
* *
32855574 TCACTAGCATAAATGC
63 TAACTAGCACAAATGC
32855590 CTTCGGACTTAGCCCGG
1 CTTCGGACTTAGCCCGG
32855607 GTATCATTCA
Statistics
Matches: 80, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
78 8 0.10
79 51 0.64
80 21 0.26
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CTTCGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGTATAATAA
CTAGCACAAATGC
Found at i:32858426 original size:21 final size:21
Alignment explanation
Indices: 32858372--32858420 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
32858362 GAAACAGGGC
32858372 ACACGCCCGTGTGGAAAGGTA
1 ACACGCCCGTGTGGAAAGGTA
32858393 ACACGCCCGTGTGGAAAGGTA
1 ACACGCCCGTGTGGAAAGGTA
32858414 ACACGCC
1 ACACGCC
32858421 TCTGTGTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.29, C:0.29, G:0.31, T:0.12
Consensus pattern (21 bp):
ACACGCCCGTGTGGAAAGGTA
Found at i:32863106 original size:46 final size:46
Alignment explanation
Indices: 32862978--32863236 Score: 169
Period size: 46 Copynumber: 5.5 Consensus size: 46
32862968 AGGCTGACGC
*
32862978 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGCCGATGA
1 CATGTCCCAGACATGGTCTTACACT-GCT-T-ACATCT-CGTGCCGATGA
*
32863028 CATGTCCCAGACATGGTCTTACACTG-TCACATCTCGTAGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGCTTACATCTCGT-GCCGATGA
* * **
32863073 CATGTACCAGAC-TTGTCTTACACTGGCTTACATCTCAAG-GTTGATG-
1 CATGTCCCAGACATGGTCTTACACT-GCTTACATCTC--GTGCCGATGA
* * ** * * * *
32863119 CATGTCCCTGACAT-GTCTTACACTAACTCT-TGTGTCAATGCTGATGC
1 CATGTCCCAGACATGGTCTTACACT-GCT-TACATCTC-GTGCCGATGA
* * *
32863166 CATGTCCCAGACATGGTCTTACACTGGTTCTCATAAT-GTGGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGCTT-ACAT-CTCGT-GCCGATGA
32863213 CATGTCCCAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
32863237 AGCACAAAAA
Statistics
Matches: 171, Mismatches: 24, Indels: 32
0.75 0.11 0.14
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 67 0.39
47 31 0.18
48 19 0.11
49 2 0.01
50 25 0.15
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGCTTACATCTCGTGCCGATGA
Found at i:32864861 original size:27 final size:26
Alignment explanation
Indices: 32864813--32864871 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
32864803 GCGAAGCTGC
*
32864813 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
32864840 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
32864866 CAGATA
1 CAGATA
32864872 CATATATGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:32864891 original size:31 final size:32
Alignment explanation
Indices: 32864834--32864895 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
32864824 ACAAAGTCAC
* *
32864834 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
*
32864866 CAGATACATATA-TGTGGCGAAGCCACCAGA
1 CAGATACAGATATTGTGGCGAAGCCACCAGA
32864896 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:32864968 original size:67 final size:70
Alignment explanation
Indices: 32864840--32864981 Score: 209
Period size: 67 Copynumber: 2.1 Consensus size: 70
32864830 TCACCAGATA
* * *
32864840 CAGATATTGTGGCTAGGCCACCAGAACAGATACATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAGATACATATA-GTGGCGAAGCCACCAGATTGCAGCGA
32864905 GGCTGC
65 GGCTGC
* *
32864911 CAGATATTGTGACGAAGTCACCAGAACA-A-ACATATA-TGGCGAGGCCACCAGATTGCAGCGAG
1 CAGATATTGTGACGAAGCCACCAGAACAGATACATATAGTGGCGAAGCCACCAGATTGCAGCGAG
32864973 GCTGC
66 GCTGC
32864978 CAGA
1 CAGA
32864982 ACGTTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
67 34 0.52
69 7 0.11
70 1 0.02
71 24 0.36
ACGTcount: A:0.32, C:0.24, G:0.27, T:0.17
Consensus pattern (70 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATACATATAGTGGCGAAGCCACCAGATTGCAGCGAG
GCTGC
Found at i:32865644 original size:27 final size:27
Alignment explanation
Indices: 32865614--32865759 Score: 202
Period size: 27 Copynumber: 5.4 Consensus size: 27
32865604 GGGGCAAAAT
* * *
32865614 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32865641 GGTAATTCTACCCTACAGGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
32865668 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32865695 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32865722 GGTAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
32865749 GGTAATTCTAC
1 GGTAATTCTAC
32865760 AACTTATCCA
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:32872430 original size:27 final size:26
Alignment explanation
Indices: 32872382--32872441 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
32872372 GCGAAGCTAC
*
32872382 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
32872409 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
32872435 CAGATAT
1 CAGATAT
32872442 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:32872454 original size:33 final size:32
Alignment explanation
Indices: 32872403--32872466 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 32
32872393 ACGAAGTCAC
32872403 CAGATACAGATATTGTGGC-TAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGTA-GCCACCAGAA
* *
32872435 CAGATATATATATATGTGGCGTAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGTAGCCACCAGA
32872467 TTGTAGTGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 11 0.39
33 15 0.54
34 2 0.07
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.22
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGTAGCCACCAGAA
Found at i:32872530 original size:27 final size:26
Alignment explanation
Indices: 32872482--32872533 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
32872472 GTGAGGCTGC
*
32872482 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
32872508 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
32872534 TTGCAGTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:32873259 original size:54 final size:54
Alignment explanation
Indices: 32873190--32873304 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
32873180 CAAAATGGTA
*
32873190 ATTT-TACCCCACAAGGGTATCTCAGTAATTTTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGT
* * **
32873243 ATTTCTACCCTACAAGGGTATCTCGGTAATTCTATTCTACAGGGGTATTTCGGT
1 ATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGT
*
32873297 AATTCTAC
1 ATTTCTAC
32873305 AACTTTTCCA
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
53 4 0.07
54 51 0.93
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (54 bp):
ATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGT
Found at i:32873301 original size:27 final size:27
Alignment explanation
Indices: 32873186--32873304 Score: 139
Period size: 27 Copynumber: 4.4 Consensus size: 27
32873176 GGGGCAAAAT
* * * *
32873186 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32873213 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32873240 GGTATTTCTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
32873267 GGTAATTCTATTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32873294 GGTAATTCTAC
1 GGTAATTCTAC
32873305 AACTTTTCCA
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:32876902 original size:14 final size:13
Alignment explanation
Indices: 32876886--32876910 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32876876 CTAAATGATT
32876886 TTTTGAAAATTTA
1 TTTTGAAAATTTA
32876899 TTTTGAAAATTT
1 TTTTGAAAATTT
32876911 TGACGTTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
TTTTGAAAATTTA
Found at i:32878068 original size:48 final size:48
Alignment explanation
Indices: 32878003--32878227 Score: 236
Period size: 48 Copynumber: 4.7 Consensus size: 48
32877993 GAGTTTTGAA
* * * ** * *
32878003 ATCCCATATAATACCATACCTGGGATATGGCATCAGCATCAATATGAG
1 ATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGACATGAG
* * * *
32878051 ATCCCTTGTAAGCCCATATCTGGGATATGGCATTGGCATTGACATAAG
1 ATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGACATGAG
32878099 ATCCCATGTAAGACCATAGT-TGGGATATGGCATTGGCATCGACATGAG
1 ATCCCATGTAAGACCATA-TCTGGGATATGGCATTGGCATCGACATGAG
* * * * *
32878147 ATTCGATGTAAAACCATATTTGGGATATGGCATTGGCATCGATATGAG
1 ATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGACATGAG
* * * * * *
32878195 GTCCCATATAAGATCATGTTTGGGACATGGCAT
1 ATCCCATGTAAGACCATATCTGGGATATGGCAT
32878228 CGACACTGTT
Statistics
Matches: 148, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
47 1 0.01
48 146 0.99
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (48 bp):
ATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGACATGAG
Found at i:32878644 original size:36 final size:36
Alignment explanation
Indices: 32878604--32878674 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
32878594 TGATGATCAT
*
32878604 GTGTGAAGCTTTTAAGCCAAATCGAATTGAGATACA
1 GTGTGAAGCTTCTAAGCCAAATCGAATTGAGATACA
32878640 GTGTGAAGCTTCTAAGCCAAATCGAATTGAGATAC
1 GTGTGAAGCTTCTAAGCCAAATCGAATTGAGATAC
32878675 TATGTATTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (36 bp):
GTGTGAAGCTTCTAAGCCAAATCGAATTGAGATACA
Found at i:32880937 original size:160 final size:160
Alignment explanation
Indices: 32880673--32880997 Score: 533
Period size: 160 Copynumber: 2.0 Consensus size: 160
32880663 TCCCGACGCG
* *
32880673 GATGAGATCTATCTCGCTTAGATGAAGGTACTCTCTAACCGAGCTACATCTGACCATGTTGATAT
1 GATGAGATCTATCTCGCTTAGATGAAGATACTCTCCAACCGAGCTACATCTGACCATGTTGATAT
* * *
32880738 TGATACTAACGTATTTGAGTAAAGTACACTTATGATGGATTGAGGCTTATAAAGGTATGAATAAA
66 TGATACTAAAGTATCTGAATAAAGTACACTTATGATGGATTGAGGCTTATAAAGGTATGAATAAA
*
32880803 GGTTTATGAGGTGTATGTGATGATGTACGA
131 GGTTTATGAGGTGTATGCGATGATGTACGA
* * * **
32880833 GATGAGATCTATCTTGCTTAGATGGAGATACTCTCCAACTGAGCTATGTCTGACCATGTTGATAT
1 GATGAGATCTATCTCGCTTAGATGAAGATACTCTCCAACCGAGCTACATCTGACCATGTTGATAT
* *
32880898 TGATACTAAAGTATCTGAATAAAGTACACTTATGATGGATTGAGGCTTATAGAGGTATGAATGAA
66 TGATACTAAAGTATCTGAATAAAGTACACTTATGATGGATTGAGGCTTATAAAGGTATGAATAAA
32880963 GGTTTATGAGGTGTATGCGATGATGTACGA
131 GGTTTATGAGGTGTATGCGATGATGTACGA
32880993 GATGA
1 GATGA
32880998 AAGTTTATGT
Statistics
Matches: 152, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
160 152 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (160 bp):
GATGAGATCTATCTCGCTTAGATGAAGATACTCTCCAACCGAGCTACATCTGACCATGTTGATAT
TGATACTAAAGTATCTGAATAAAGTACACTTATGATGGATTGAGGCTTATAAAGGTATGAATAAA
GGTTTATGAGGTGTATGCGATGATGTACGA
Found at i:32885187 original size:48 final size:48
Alignment explanation
Indices: 32885087--32885198 Score: 118
Period size: 48 Copynumber: 2.3 Consensus size: 48
32885077 GACACTTTGT
* * **
32885087 AAGACCGTATCAGGGATATGACATTGGCATCGAAATGAGATCCCATGT
1 AAGACCATATCTGGGATATGACATTGGCATCGAAATGAGATCCCATAC
* * * *
32885135 AAGACCATATCTGGGATATTG-CATTGGCATCGATATGGGGTCCCGTAC
1 AAGACCATATCTGGGATA-TGACATTGGCATCGAAATGAGATCCCATAC
* *
32885183 AAGACGATGTCTGGGA
1 AAGACCATATCTGGGA
32885199 CATGGCATCA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 51 0.96
49 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
AAGACCATATCTGGGATATGACATTGGCATCGAAATGAGATCCCATAC
Found at i:32891373 original size:16 final size:15
Alignment explanation
Indices: 32891346--32891379 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
32891336 AGAACTAGAA
*
32891346 TATAATTATATTTAT
1 TATAATTATATTAAT
32891361 TATAATATATATTAAT
1 TATAAT-TATATTAAT
32891377 TAT
1 TAT
32891380 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:32894428 original size:15 final size:14
Alignment explanation
Indices: 32894405--32894439 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
32894395 AAATGCTTAT
32894405 GAAAAAAAAAGAAA
1 GAAAAAAAAAGAAA
32894419 GAAAAGAAAAAGAAA
1 GAAAA-AAAAAGAAA
32894434 -AAAAAA
1 GAAAAAA
32894440 GAGAAGAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 2 0.10
14 9 0.45
15 9 0.45
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (14 bp):
GAAAAAAAAAGAAA
Found at i:32896514 original size:40 final size:40
Alignment explanation
Indices: 32896456--32896532 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
32896446 ACATACTATG
** *
32896456 TGGGGATAAAATTGACCCACCCAGCCCTACACACCAAGTA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
* *
32896496 TGGGGATAAAATCAACCCATCTAACCCTACACACCAA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAA
32896533 ATGGTACCGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.38, C:0.32, G:0.14, T:0.16
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:32901611 original size:12 final size:12
Alignment explanation
Indices: 32901594--32901621 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32901584 AAAGTTATTT
32901594 CAAATCATTTTA
1 CAAATCATTTTA
32901606 CAAATCATTTTA
1 CAAATCATTTTA
32901618 CAAA
1 CAAA
32901622 AACCAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (12 bp):
CAAATCATTTTA
Found at i:32902381 original size:40 final size:40
Alignment explanation
Indices: 32902334--32902410 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
32902324 ACACACCATG
*
32902334 TGGGGATAAAATCGACCCA-CCTAACCCTACACACCAAGTA
1 TGGGGATAAAATCAACCCATCC-AACCCTACACACCAAGTA
*
32902374 TGGGGATAAAATCAACCTATCCAACCCTACACACCAA
1 TGGGGATAAAATCAACCCATCCAACCCTACACACCAA
32902411 ATGTTACTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 32 0.94
41 2 0.06
ACGTcount: A:0.39, C:0.32, G:0.13, T:0.16
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCATCCAACCCTACACACCAAGTA
Found at i:32902886 original size:17 final size:17
Alignment explanation
Indices: 32902864--32902897 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
32902854 ATGTGGTTCA
*
32902864 CCTGTGTGGCCTACACG
1 CCTGTGTGGCCCACACG
32902881 CCTGTGTGGCCCACACG
1 CCTGTGTGGCCCACACG
32902898 GCCCAATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.38, G:0.29, T:0.21
Consensus pattern (17 bp):
CCTGTGTGGCCCACACG
Found at i:32913149 original size:28 final size:28
Alignment explanation
Indices: 32913091--32913170 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
32913081 TGGGAAGTAG
* * **
32913091 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTAATGGGCCATATGAACGACA
*
32913119 TTGGGCCTAATGGGCCATGTGAACGACA
1 TTGGGCCTAATGGGCCATATGAACGACA
* * *
32913147 TTGGGCTTAAAGGGGCCAAATGAA
1 TTGGGCCT-AATGGGCCATATGAA
32913171 TGAGTGTGGA
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 30 0.71
29 12 0.29
ACGTcount: A:0.26, C:0.16, G:0.34, T:0.24
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAACGACA
Found at i:32913508 original size:27 final size:27
Alignment explanation
Indices: 32913470--32913754 Score: 366
Period size: 27 Copynumber: 10.7 Consensus size: 27
32913460 TAATAAAGAG
*
32913470 AAATTA-CTGAAATACCTTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
*
32913497 AAATTA-CTGAAATACTCTCGA-TTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
*
32913523 AAATTATCGAAATACCCTCGATTT-TG
1 AAATTATCGAAATACCCTCGATTTGTA
*
32913549 CAATTATCGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
32913576 AAATTATCGAAACACCCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
32913603 AAATTATTGAAACACCCTCGACTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
32913630 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
32913657 AAATTATCAAAATACCCTTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
32913684 AAATTA-CTGAAATACCTTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* *
32913711 AAATTACCGAAACACCC-CGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
32913737 AAATTATCAAAATACCCT
1 AAATTATCGAAATACCCT
32913755 TGTAGTGTAA
Statistics
Matches: 227, Mismatches: 25, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
26 71 0.31
27 155 0.68
28 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:32913778 original size:27 final size:27
Alignment explanation
Indices: 32913733--32913796 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
32913723 CACCCCGATT
* *
32913733 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATGACCAAAATACCCTTGTAG
*
32913760 TGTAAAATGACCAACATACCCTTGTAG
1 TGTAAAATGACCAAAATACCCTTGTAG
*
32913787 GGTAAAATGA
1 TGTAAAATGA
32913797 TTGTTTTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (27 bp):
TGTAAAATGACCAAAATACCCTTGTAG
Found at i:32913794 original size:107 final size:104
Alignment explanation
Indices: 32913470--32913783 Score: 378
Period size: 107 Copynumber: 2.9 Consensus size: 104
32913460 TAATAAAGAG
* *
32913470 AAATTACTGAAATACCTTCGATTTGTAAAATTACTGAAATACTCTCGATTGTAAAATTATCGAAA
1 AAATTACTGAAATACCTTCGATTTGTAAAATTACTGAAACAC-CCCGATTGTAAAATTATCGAAA
* ** * *
32913535 TACCCTCGATTTTGCAATTATCGAAATACCCTCGATTTGTA
65 TACCCTCGATTGTAAAATTA-CCAAATACCCTTGATTTGTA
* * * *
32913576 AAATTA-TCGAAACACCCTCAATTTGTAAAATTATTGAAACACCCTCGACTTGTAAAATTATCGA
1 AAATTACT-GAAATACCTTCGATTTGTAAAATTACTGAAACACCC-CGA-TTGTAAAATTATCGA
*
32913640 AATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTTGTA
63 AATACCCTCGA-TTGTAAAATTA-CCAAATACCCTTGATTTGTA
* *
32913684 AAATTACTGAAATACCTTCGATTTGTAAAATTACCGAAACACCCCGATTTGTAAAATTATCAAAA
1 AAATTACTGAAATACCTTCGATTTGTAAAATTACTGAAACACCCCGA-TTGTAAAATTATCGAAA
* * *
32913749 TACCCTTGTAGTGTAAAATGACCAACATACCCTTG
65 TACCCTCG-ATTGTAAAATTACCAA-ATACCCTTG
32913784 TAGGGTAAAA
Statistics
Matches: 179, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
105 2 0.01
106 41 0.23
107 70 0.39
108 65 0.36
109 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (104 bp):
AAATTACTGAAATACCTTCGATTTGTAAAATTACTGAAACACCCCGATTGTAAAATTATCGAAAT
ACCCTCGATTGTAAAATTACCAAATACCCTTGATTTGTA
Found at i:32916657 original size:28 final size:28
Alignment explanation
Indices: 32916617--32916697 Score: 90
Period size: 28 Copynumber: 2.9 Consensus size: 28
32916607 TGGGAAGTAG
* *
32916617 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTAATGGGCCATATGAATGAGA
* *
32916645 TTGGGCCTAATGGGCCATGTGAACGAGA
1 TTGGGCCTAATGGGCCATATGAATGAGA
* * *
32916673 TTGGACCTAAAGGGGCCAAATGAAT
1 TTGGGCCT-AATGGGCCATATGAAT
32916698 AAGTGTGGAT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 31 0.72
29 12 0.28
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.23
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATGAGA
Found at i:32917055 original size:26 final size:27
Alignment explanation
Indices: 32916997--32917077 Score: 137
Period size: 27 Copynumber: 3.0 Consensus size: 27
32916987 TAATAAAGAA
*
32916997 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTG
*
32917024 AAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTG
32917050 AAATTACTGAAATACCCTCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTG
32917077 A
1 A
32917078 TAAACCGTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
26 24 0.48
27 26 0.52
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTG
Found at i:32917089 original size:27 final size:26
Alignment explanation
Indices: 32917005--32917077 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
32916995 AAAAATTACT
*
32917005 GAAATACCCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTGAAA-TACC
*
32917032 GAAATACCCTCGA-TTGTGAAATTACT
1 GAAATACCCTCGATTTGTGAAA-TACC
32917058 GAAATACCCTCGATTTGTGA
1 GAAATACCCTCGATTTGTGA
32917078 TAAACCGTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
26 24 0.56
27 19 0.44
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (26 bp):
GAAATACCCTCGATTTGTGAAATACC
Found at i:32921663 original size:48 final size:48
Alignment explanation
Indices: 32921604--32922265 Score: 1072
Period size: 48 Copynumber: 13.8 Consensus size: 48
32921594 ATACATATGA
*
32921604 GATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
* * * *
32921652 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
32921700 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
32921748 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
*
32921796 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
*
32921844 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
* * * * *
32921892 GATATGTATATGTGGTAAAGCCAAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
32921940 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
* * * * *
32921988 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTAAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
32922036 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
* * *
32922084 GATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
*
32922132 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
* ** * * *
32922180 GATATGTATATGTGGTAAAGTCGAATGGAAAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
*
32922228 GATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32922266 TGTTGTAACA
Statistics
Matches: 568, Mismatches: 46, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 568 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
Found at i:32922365 original size:37 final size:37
Alignment explanation
Indices: 32922310--32922417 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
32922300 GGAAATGTAT
32922310 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
32922347 TCCGAGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
32922384 TCCGGGTAAGACCCGATAACTTCGTATGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
32922418 TCGTCTGAGC
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:32930980 original size:54 final size:54
Alignment explanation
Indices: 32930811--32930997 Score: 241
Period size: 54 Copynumber: 3.5 Consensus size: 54
32930801 CACGCGATCA
** * *
32930811 ATTTGTAAAATTACTTAAATACCCCCGATTTGTAAAATTATCGAAACACCCTCG
1 ATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCG
* * *
32930865 ATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTATCGAAATACCATCG
1 ATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCG
* * *
32930919 ATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTATCGAAATACCCT-T
1 ATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCG
* * *
32930972 ATAGTGTAAAATGACCGACATACCCT
1 AT-TTGTAAAATTACCGAAATACCCT
32930998 TGTAGGGTAA
Statistics
Matches: 115, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
53 2 0.02
54 113 0.98
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
ATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCG
Done.