Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 122 of 378
Found at i:34308859 original size:27 final size:26
Alignment explanation
Indices: 34308815--34308866 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
34308805 CTCGCTGCAA
* *
34308815 TCTGGTGGCTTTGCCACATATATTTGT
1 TCTGGTGACTTCGCCACA-ATATTTGT
*
34308842 TCTGGTGACTTCGTCACAATATTTG
1 TCTGGTGACTTCGCCACAATATTTG
34308867 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.42
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATTTGT
Found at i:34308994 original size:6 final size:6
Alignment explanation
Indices: 34308985--34309073 Score: 83
Period size: 6 Copynumber: 14.5 Consensus size: 6
34308975 TTGCATTCAC
* * *
34308985 ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
34309034 CCA-CCTG ATTTTG ATTCTG ATTCTG ATTCTG ATTCTG ATT
1 --ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT
34309074 TTAGTTATGA
Statistics
Matches: 67, Mismatches: 10, Indels: 12
0.75 0.11 0.13
Matches are distributed among these distances:
5 3 0.04
6 56 0.84
7 5 0.07
8 3 0.04
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:34309049 original size:37 final size:37
Alignment explanation
Indices: 34308985--34309070 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 37
34308975 TTGCATTCAC
** *
34308985 ATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGCCACCTAATTCTGATTCTGATTCTG
* * *
34309022 ATTTTGATTCTGCCACCTGATTTTGATTCTGATTCTG
1 ATTCTGATTCTGCCACCTAATTCTGATTCTGATTCTG
34309059 ATTCTGATTCTG
1 ATTCTGATTCTG
34309071 ATTTTAGTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (37 bp):
ATTCTGATTCTGCCACCTAATTCTGATTCTGATTCTG
Found at i:34310747 original size:27 final size:27
Alignment explanation
Indices: 34310717--34310778 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
34310707 CAAAATCGTC
* *
34310717 ATTTTACCCTACAAGGGTATTTCAGTA
1 ATTTTACACTACAAGAGTATTTCAGTA
*
34310744 ATTTTACACTACAAGAGTATTTCGGTA
1 ATTTTACACTACAAGAGTATTTCAGTA
34310771 ATTTTACA
1 ATTTTACA
34310779 AACTGGGGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAAGAGTATTTCAGTA
Found at i:34310790 original size:27 final size:27
Alignment explanation
Indices: 34310760--34311032 Score: 243
Period size: 27 Copynumber: 10.2 Consensus size: 27
34310750 CACTACAAGA
34310760 GTATTTCGGTAATTTTACAAACTGGGG
1 GTATTTCGGTAATTTTACAAACTGGGG
* *
34310787 GTATTTTGGTAATTTTACAAA-TTGGG
1 GTATTTCGGTAATTTTACAAACTGGGG
* *
34310813 GTCTTTCGGTAATTTTAC-AA-TGCAAGG
1 GTATTTCGGTAATTTTACAAACTG--GGG
** * **
34310840 GTATTTTAGAAATTTTACAAACCAGGG
1 GTATTTCGGTAATTTTACAAACTGGGG
* **
34310867 GTATTTCGATAATTTTACAAAC-CAGG
1 GTATTTCGGTAATTTTACAAACTGGGG
* *
34310893 GTATTTCGATAATTTTACAAACTGGGT
1 GTATTTCGGTAATTTTACAAACTGGGG
* * **
34310920 GTATTTCGATAATTTTACAATCTGAAG
1 GTATTTCGGTAATTTTACAAACTGGGG
* * *
34310947 GAATTTCAGAAATTTTACAAACTGGGG
1 GTATTTCGGTAATTTTACAAACTGGGG
* *
34310974 GTATTTTC-GTAATATTACAAA-TTGGG
1 GTA-TTTCGGTAATTTTACAAACTGGGG
* * *
34311000 GTATTTCGATAATTTTACAAATTAGGG
1 GTATTTCGGTAATTTTACAAACTGGGG
34311027 GTATTT
1 GTATTT
34311033 TGGTGTAATA
Statistics
Matches: 198, Mismatches: 40, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
25 7 0.04
26 62 0.31
27 123 0.62
28 6 0.03
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GTATTTCGGTAATTTTACAAACTGGGG
Found at i:34310844 original size:80 final size:80
Alignment explanation
Indices: 34310731--34311032 Score: 272
Period size: 80 Copynumber: 3.8 Consensus size: 80
34310721 TACCCTACAA
* * * * * *
34310731 GGGTATTTCAGTAATTTTACACTACAAGAGTATTTCGGTAATTTTACAAACTGGGGGTATTTTGG
1 GGGTATTTCGGTAATTTTACAATACAAGGGTATTTCGATAATTTTACAAACTAGGGGTATTTCGG
*
34310796 TAATTTTACAAATTG
66 TAATTTTACAAATCG
* * * *
34310811 GGGTCTTTCGGTAATTTTACAATGCAAGGGTATTTTAGA-AATTTTACAAACCAGGGGTATTTCG
1 GGGTATTTCGGTAATTTTACAATACAAGGGTA-TTTCGATAATTTTACAAACTAGGGGTATTTCG
* * *
34310875 ATAATTTTACAAACCA
65 GTAATTTTACAAATCG
* ** * * *
34310891 GGGTATTTCGATAATTTTACAA-ACTGGGTGTATTTCGATAATTTTACAATCT-GAAGGAATTTC
1 GGGTATTTCGGTAATTTTACAATACAAGG-GTATTTCGATAATTTTACAAACTAG-GGGTATTTC
* * *
34310954 AGAAATTTTACAAACTGG
64 GGTAATTTTACAAA-TCG
* *** *
34310972 GGGTATTTTC-GTAATATTACAA-ATTGGGGTATTTCGATAATTTTACAAATTAGGGGTATTT
1 GGGTA-TTTCGGTAATTTTACAATACAAGGGTATTTCGATAATTTTACAAACTAGGGGTATTT
34311033 TGGTGTAATA
Statistics
Matches: 178, Mismatches: 37, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
79 9 0.05
80 140 0.79
81 25 0.14
82 4 0.02
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (80 bp):
GGGTATTTCGGTAATTTTACAATACAAGGGTATTTCGATAATTTTACAAACTAGGGGTATTTCGG
TAATTTTACAAATCG
Found at i:34310880 original size:107 final size:105
Alignment explanation
Indices: 34310728--34311032 Score: 348
Period size: 107 Copynumber: 2.9 Consensus size: 105
34310718 TTTTACCCTA
* * * * *
34310728 CAAGGGTATTTCAGTAATTTTACACTA-CAAGAGTATTTCGGTAATTTTACAAACTGGGGGTATT
1 CAAGGGTATTTCAGAAATTTTACA-AACCAGGGGTATTTC-GTAATTTTACAAACTCGGGGTATT
* * * *
34310792 TTGGTAATTTTACAAATTGGGGTCTTTCGGTAATTTTACAAT
64 TCGATAATTTTACAAATTGGGGTATTTCGATAATTTTACAAT
* *
34310834 GCAAGGGTATTTTAGAAATTTTACAAACCAGGGGTATTTCGATAATTTTACAAAC-CAGGGTATT
1 -CAAGGGTATTTCAGAAATTTTACAAACCAGGGGTATTTCG-TAATTTTACAAACTCGGGGTATT
*
34310898 TCGATAATTTTACAAACTGGGTGTATTTCGATAATTTTACAAT
64 TCGATAATTTTACAAATTGGG-GTATTTCGATAATTTTACAAT
* ** * *
34310941 CTGAA-GGAATTTCAGAAATTTTACAAACTGGGGGTATTTTCGTAATATTACAAA-TTGGGGTAT
1 C--AAGGGTATTTCAGAAATTTTACAAACCAGGGGTA-TTTCGTAATTTTACAAACTCGGGGTAT
34311004 TTCGATAATTTTACAAATTAGGGGTATTT
63 TTCGATAATTTTACAAATT-GGGGTATTT
34311033 TGGTGTAATA
Statistics
Matches: 170, Mismatches: 20, Indels: 16
0.83 0.10 0.08
Matches are distributed among these distances:
106 28 0.16
107 132 0.78
108 10 0.06
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (105 bp):
CAAGGGTATTTCAGAAATTTTACAAACCAGGGGTATTTCGTAATTTTACAAACTCGGGGTATTTC
GATAATTTTACAAATTGGGGTATTTCGATAATTTTACAAT
Found at i:34311033 original size:53 final size:51
Alignment explanation
Indices: 34310760--34311032 Score: 232
Period size: 53 Copynumber: 5.1 Consensus size: 51
34310750 CACTACAAGA
* * * *
34310760 GTATTTCGGTAATTTTACAAACTGGGGGTATTTTGGTAATTTTACAAATTGGG
1 GTATTTC-GTAATTTTACAAA-TTGGGGTATTTCGATAATTTTACAAACTGGG
* * *
34310813 GTCTTTCGGTAATTTTAC-AA-TGCAAGGGTATTTTAGA-AATTTTACAAACCAGGG
1 GTATTTC-GTAATTTTACAAATTG---GGGTA-TTTCGATAATTTTACAAA-CTGGG
***
34310867 GTATTTCGATAATTTTACAAACCAGGGTATTTCGATAATTTTACAAACTGGG
1 GTATTTCG-TAATTTTACAAATTGGGGTATTTCGATAATTTTACAAACTGGG
* *
34310919 TGTATTTCGATAATTTTAC-AATCTGAAGGAATTTCAGA-AATTTTACAAACTGGGG
1 -GTATTTCG-TAATTTTACAAAT-TG-GGGTATTTC-GATAATTTTACAAACT-GGG
* *
34310974 GTATTTTCGTAATATTACAAATTGGGGTATTTCGATAATTTTACAAATTAGGG
1 GTA-TTTCGTAATTTTACAAATTGGGGTATTTCGATAATTTTACAAACT-GGG
34311027 GTATTT
1 GTATTT
34311033 TGGTGTAATA
Statistics
Matches: 182, Mismatches: 21, Indels: 35
0.76 0.09 0.15
Matches are distributed among these distances:
50 1 0.01
52 18 0.10
53 93 0.51
54 55 0.30
55 15 0.08
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (51 bp):
GTATTTCGTAATTTTACAAATTGGGGTATTTCGATAATTTTACAAACTGGG
Found at i:34312552 original size:28 final size:28
Alignment explanation
Indices: 34312512--34312593 Score: 128
Period size: 28 Copynumber: 2.9 Consensus size: 28
34312502 GCAATCAAAT
*
34312512 ATGGCACTCAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAGATATTGAGA
34312540 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAGATATTGAGA
* * *
34312568 ATGACACTTAGTGTGCAAAATATTGA
1 ATGGCACTTAGTGTGCGAGATATTGA
34312594 ATGATTCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAGATATTGAGA
Found at i:34313024 original size:21 final size:21
Alignment explanation
Indices: 34313000--34313039 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
34312990 GAACGTATTG
34313000 TGATGTATGTG-AAATGAAATA
1 TGAT-TATGTGCAAATGAAATA
*
34313021 TGATTATGTGCCAATGAAA
1 TGATTATGTGCAAATGAAA
34313040 CATAAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.33
Consensus pattern (21 bp):
TGATTATGTGCAAATGAAATA
Found at i:34320775 original size:40 final size:40
Alignment explanation
Indices: 34320709--34320852 Score: 132
Period size: 40 Copynumber: 3.6 Consensus size: 40
34320699 AAATTGAATG
* * **
34320709 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAATTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAGCT
* * **
34320748 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAGCT
* * * *
34320788 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTA-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAG-AAGCT
*
34320828 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
34320853 TTTGTGCACG
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
39 16 0.18
40 71 0.81
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAGCT
Found at i:34320853 original size:40 final size:39
Alignment explanation
Indices: 34320747--34320875 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
34320737 TGCTGGAATT
* * *
34320747 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
34320787 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
34320827 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
34320867 TATATCCGG
1 TATATCCGG
34320876 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:34325222 original size:28 final size:28
Alignment explanation
Indices: 34325188--34325246 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
34325178 GCAATCAAAT
34325188 ATGGCACTCACTGTACGAAATATTGAGA
1 ATGGCACTCACTGTACGAAATATTGAGA
* * * *
34325216 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTCACTGTACGAAATATTGAGA
34325244 ATG
1 ATG
34325247 ATACTTAGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (28 bp):
ATGGCACTCACTGTACGAAATATTGAGA
Found at i:34325252 original size:28 final size:28
Alignment explanation
Indices: 34325203--34325266 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
34325193 ACTCACTGTA
*
34325203 CGAAATATTGAGAATGGCACTTAGTGTG
1 CGAAATATTGAGAATGACACTTAGTGTG
* *
34325231 CGAGATATTGAGAATGATACTTAGTGTG
1 CGAAATATTGAGAATGACACTTAGTGTG
34325259 CGAAATAT
1 CGAAATAT
34325267 CGAATGATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (28 bp):
CGAAATATTGAGAATGACACTTAGTGTG
Found at i:34325432 original size:41 final size:40
Alignment explanation
Indices: 34325386--34325499 Score: 99
Period size: 40 Copynumber: 2.8 Consensus size: 40
34325376 GGTGATATTC
*
34325386 GGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTG-AATTAAATA
1 GGGCTTT-AGCCTAGCAAGCCTTGTGCTGGTGTAA-AAAATA
* *
34325427 GGGC-TTATGCCTAGC-AGGCTTGTTGCCGGTGTAAAAAATA
1 GGGCTTTA-GCCTAGCAAGCCTTG-TGCTGGTGTAAAAAATA
* * * *
34325467 AGACTTTAAGTCTAGCAGGCCTTGTGCTGGTGT
1 GGGCTTT-AGCCTAGCAAGCCTTGTGCTGGTGT
34325500 GAGATACAGG
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
39 7 0.12
40 23 0.40
41 22 0.38
42 6 0.10
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (40 bp):
GGGCTTTAGCCTAGCAAGCCTTGTGCTGGTGTAAAAAATA
Found at i:34325707 original size:21 final size:22
Alignment explanation
Indices: 34325676--34325716 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
34325666 GAATGTATTG
*
34325676 TGATGTATGTGGAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
*
34325698 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGCAAATGAAA
34325717 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGCAAATGAAATA
Found at i:34327363 original size:27 final size:27
Alignment explanation
Indices: 34327314--34327482 Score: 166
Period size: 27 Copynumber: 6.3 Consensus size: 27
34327304 TTACATTTGG
* *
34327314 TAATTTTACAAACTG-GGGGATTTCGA
1 TAATTTTACAATCTGAGGGTATTTCGA
* *
34327340 TAATTTTTCAATCTGATGGTATTTCGA
1 TAATTTTACAATCTGAGGGTATTTCGA
*
34327367 TAATTTTACAATCCT-AGGGTATTTCGG
1 TAATTTTACAAT-CTGAGGGTATTTCGA
* * *
34327394 TAATTTTACAATCTGGGGGTATTTTGG
1 TAATTTTACAATCTGAGGGTATTTCGA
*
34327421 TAATTTTACTAATC-GAGGGTATTT-TA
1 TAATTTTAC-AATCTGAGGGTATTTCGA
** * *
34327447 GTAATTTTACAATCAAAGGGTATTTTGG
1 -TAATTTTACAATCTGAGGGTATTTCGA
34327475 TAATTTTA
1 TAATTTTA
34327483 AAAATTGGGA
Statistics
Matches: 121, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
26 19 0.16
27 96 0.79
28 6 0.05
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.43
Consensus pattern (27 bp):
TAATTTTACAATCTGAGGGTATTTCGA
Found at i:34327453 original size:81 final size:79
Alignment explanation
Indices: 34327308--34327491 Score: 219
Period size: 81 Copynumber: 2.3 Consensus size: 79
34327298 GGGGTGTTAC
* * *
34327308 ATTTGGTAATTTTACAAACTGGGGGATTTCGATAATTTTTCAATCTGATGGTATTTCGATAATTT
1 ATTTGGTAATTTTACAAACTGGGGGATTTCGATAATTTTACAATCTGAGGGTATTTAGATAATTT
**
34327373 TACAATCCTAGGGT
66 TACAATCAAAGGGT
* * *
34327387 ATTTCGGTAATTTTACAATCTGGGGGTATTTTGGTAATTTTACTAATC-GAGGGTATTTTAG-TA
1 ATTT-GGTAATTTTACAAACTGGGGG-ATTTCGATAATTTTAC-AATCTGAGGGTA-TTTAGATA
34327450 ATTTTACAATCAAAGGGT
62 ATTTTACAATCAAAGGGT
* *
34327468 ATTTTGGTAATTTTAAAAATTGGG
1 A-TTTGGTAATTTTACAAACTGGG
34327492 ATCTTAACGA
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
79 4 0.04
80 20 0.22
81 54 0.61
82 11 0.12
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (79 bp):
ATTTGGTAATTTTACAAACTGGGGGATTTCGATAATTTTACAATCTGAGGGTATTTAGATAATTT
TACAATCAAAGGGT
Found at i:34330322 original size:40 final size:40
Alignment explanation
Indices: 34330189--34330374 Score: 175
Period size: 40 Copynumber: 4.7 Consensus size: 40
34330179 GCTACTCGTT
* * *
34330189 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAATAACTCGCA
** * *
34330229 CAAATGCCTTCGGGA-CTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATTTAATAACTCGCA
* *
34330269 CAAATGCCTTCGGATCTTAGTCTGGATTTATTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAATAACTCGCA
* * *
34330309 CAAATGCCTTCGGATCTTAGTCCGGATATAATCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAATAAC-TCGCA
*
34330350 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGTCCGGA
34330375 CATCATTCGA
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 112 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAATAACTCGCA
Found at i:34330368 original size:80 final size:80
Alignment explanation
Indices: 34330189--34330373 Score: 207
Period size: 80 Copynumber: 2.3 Consensus size: 80
34330179 GCTACTCGTT
*
34330189 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* * *
34330254 ATTTAGTAACTCGCA
66 ATATAATAACTAGCA
* * * **
34330269 CAAATGCCTTC-GGATCTTAGTCTGGATT-TATTAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* *
34330331 CGGATATAATCACTTAGCA
63 CAGATATAATAAC-TAGCA
34330350 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
34330374 ACATCATTCG
Statistics
Matches: 87, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
79 6 0.07
80 68 0.78
81 13 0.15
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAATAACTAGCA
Found at i:34337909 original size:36 final size:36
Alignment explanation
Indices: 34337865--34337934 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
34337855 TGACAACAAC
34337865 AAAGGGTAGTCCTATACATGCATTTCAAAGTTCACA
1 AAAGGGTAGTCCTATACATGCATTTCAAAGTTCACA
34337901 AAAGGGTAGTCCTATACATGCATTTCAAAGTTCA
1 AAAGGGTAGTCCTATACATGCATTTCAAAGTTCA
34337935 ACCAAAAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (36 bp):
AAAGGGTAGTCCTATACATGCATTTCAAAGTTCACA
Found at i:34338428 original size:40 final size:40
Alignment explanation
Indices: 34338384--34338568 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
34338374 GCTACTCTTT
*
34338384 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
34338424 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
34338464 C-AATGCCTTC-GGATCTTAGTCTGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* ** * * *
34338503 TAAATGCCTTC-GGATCTTATTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
34338544 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34338569 CATCATTCGA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 3 0.02
39 30 0.24
40 79 0.64
41 12 0.10
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:34340421 original size:29 final size:29
Alignment explanation
Indices: 34340388--34340518 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
34340378 TGACGAGATC
*
34340388 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
34340417 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
34340446 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
34340475 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
34340504 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
34340519 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:34348385 original size:29 final size:29
Alignment explanation
Indices: 34348351--34348481 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
34348341 TGACGAGATC
*
34348351 GGCACTAAGTGTGTGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
*
34348380 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
* *
34348409 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
* * ** * *
34348438 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
34348467 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
34348482 AGCTCGGAGG
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:34353505 original size:48 final size:47
Alignment explanation
Indices: 34353395--34353605 Score: 223
Period size: 46 Copynumber: 4.5 Consensus size: 47
34353385 TGATATGTGT
* *
34353395 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCAT--AG-TATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAGATAT-ATA
* *
34353441 GCTTGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATTTA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATATA
* * ** * * *
34353488 CGCCAGTGTAAGACATGTCTAGGACATGCATCGGTATTGAGACA-AGA
1 -GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATATA
* *
34353535 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-TA
* *
34353583 GCTAGTGTAAAACCTGTCTGGGA
1 GCTAGTGTAAGACATGTCTGGGA
34353606 TATGGCGTCA
Statistics
Matches: 136, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
45 1 0.01
46 68 0.50
47 6 0.04
48 61 0.45
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATATA
Found at i:34354969 original size:21 final size:20
Alignment explanation
Indices: 34354943--34354982 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
34354933 GTTATAATGA
*
34354943 CCACACGGGCGTGTTGCCCTT
1 CCACACAGGCGTG-TGCCCTT
*
34354964 CCACACAGGTGTGTGCCCT
1 CCACACAGGCGTGTGCCCT
34354983 ATTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.38, G:0.28, T:0.23
Consensus pattern (20 bp):
CCACACAGGCGTGTGCCCTT
Found at i:34356536 original size:20 final size:21
Alignment explanation
Indices: 34356511--34356549 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
34356501 TGCAACCTTG
34356511 GAAAAT-TTT-TGAAGTTTTTT
1 GAAAATCTTTATG-AGTTTTTT
34356531 GAAAATCTTTATGAGTTTT
1 GAAAATCTTTATGAGTTTT
34356550 CGATTAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 9 0.53
22 2 0.12
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51
Consensus pattern (21 bp):
GAAAATCTTTATGAGTTTTTT
Found at i:34358409 original size:21 final size:19
Alignment explanation
Indices: 34358372--34358410 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
34358362 GCAACTGGTT
*
34358372 TCTTTTTCTTGTTTTCTAG
1 TCTTTTTCTTGTCTTCTAG
34358391 TCTTTTTCTTTTGTCTTCTA
1 TCTTTTTC--TTGTCTTCTA
34358411 TGAGGCCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
21 9 0.53
ACGTcount: A:0.05, C:0.18, G:0.08, T:0.69
Consensus pattern (19 bp):
TCTTTTTCTTGTCTTCTAG
Found at i:34366756 original size:48 final size:49
Alignment explanation
Indices: 34366704--34366796 Score: 136
Period size: 49 Copynumber: 1.9 Consensus size: 49
34366694 GTGTAAGACA
34366704 TGTCTAGGACAT-GCATCGGCCTCGCGATAT-ACAAGCTAGTGTAAAATG
1 TGTCTAGGACATGGCATCGGCCTCGCGATATGA-AAGCTAGTGTAAAATG
* * *
34366752 TGTCTGGGACATGGCATCGGCCTCGCTATGTGAAAGCTAGTGTAA
1 TGTCTAGGACATGGCATCGGCCTCGCGATATGAAAGCTAGTGTAA
34366797 GACCATGTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
48 11 0.28
49 28 0.70
50 1 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (49 bp):
TGTCTAGGACATGGCATCGGCCTCGCGATATGAAAGCTAGTGTAAAATG
Found at i:34366789 original size:49 final size:50
Alignment explanation
Indices: 34366644--34366820 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 50
34366634 TAATAGGTGT
* * * * *
34366644 GCTAGTGTAAG-ACATGTCTGGGACAT-GTATCAGCCAC-AG-TATGA-GA
1 GCTAGTGTAAGAACATGTCTGGGACATGGCATCGGCCTCGCGATAT-ACAA
* *
34366690 GCCAGTGTAAG-ACATGTCTAGGACAT-GCATCGGCCTCGCGATATACAA
1 GCTAGTGTAAGAACATGTCTGGGACATGGCATCGGCCTCGCGATATACAA
** * *
34366738 GCTAGTGTAA-AATGTGTCTGGGACATGGCATCGGCCTCGCTATGTGA-AA
1 GCTAGTGTAAGAACATGTCTGGGACATGGCATCGGCCTCGCGATAT-ACAA
* *
34366787 GCTAGTGTAAGACCATGTCTGGGATATGGCATCG
1 GCTAGTGTAAGAACATGTCTGGGACATGGCATCG
34366821 ACATCTTAAC
Statistics
Matches: 107, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
46 32 0.30
47 2 0.02
48 25 0.23
49 28 0.26
50 20 0.19
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
GCTAGTGTAAGAACATGTCTGGGACATGGCATCGGCCTCGCGATATACAA
Found at i:34370916 original size:24 final size:24
Alignment explanation
Indices: 34370888--34370964 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 24
34370878 ACCTTGAGAG
34370888 ATAAGCAGTTATATGCCAAGTTCA
1 ATAAGCAGTTATATGCCAAGTTCA
*
34370912 ATAAGCAGTTATATGCCAAGTTTA
1 ATAAGCAGTTATATGCCAAGTTCA
* *
34370936 GTAAGCAATTATATGCCAAGTTCA
1 ATAAGCAGTTATATGCCAAGTTCA
*
34370960 GTAAG
1 ATAAG
34370965 AGCGAATTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (24 bp):
ATAAGCAGTTATATGCCAAGTTCA
Found at i:34373741 original size:27 final size:27
Alignment explanation
Indices: 34373707--34373905 Score: 269
Period size: 27 Copynumber: 7.4 Consensus size: 27
34373697 TGGATAAGTT
*
34373707 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCTTGTAGG
34373734 GTAGAATTACCGAAATACTCC-TGTAGG
1 GTAGAATTACCGAAATAC-CCTTGTAGG
** *
34373761 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
34373788 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
34373815 ATAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
34373842 GTAGAAATACCGAAATA-CCTCTGTAGG
1 GTAGAATTACCGAAATACCCT-TGTAGG
*
34373869 GTAGAATTACCGAGATACCCTTGT-GG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
34373895 GTAAAATTACC
1 GTAGAATTACC
34373906 ATTTTGCCCC
Statistics
Matches: 154, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
26 17 0.11
27 132 0.86
28 5 0.03
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:34377079 original size:48 final size:48
Alignment explanation
Indices: 34376936--34377098 Score: 172
Period size: 48 Copynumber: 3.4 Consensus size: 48
34376926 GTGTGCTAGC
* * * *
34376936 GTAAGACATGTCTGGGACATCCATCAGCCAC-AG-T-ATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCAAGATAATCA-AGCCAGT
* * *
34376982 GTAAGACATGTTTGGGACATGCATTGGCCTCAAGATAATTAAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCAAGATAATCAAGCCAGT
** *
34377030 GTAAGACATGTCTGGGACATGCATCGGCCTCGCGATACA-CAAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCAAGATA-ATCAAGCCAGT
* *
34377078 GTAAGACTTCTCTGGGACATG
1 GTAAGACATGTCTGGGACATG
34377099 GCGTCAGCTT
Statistics
Matches: 99, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
46 26 0.26
47 2 0.02
48 67 0.68
49 4 0.04
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.23
Consensus pattern (48 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTCAAGATAATCAAGCCAGT
Found at i:34377136 original size:44 final size:44
Alignment explanation
Indices: 34377074--34377188 Score: 185
Period size: 44 Copynumber: 2.6 Consensus size: 44
34377064 ATACACAAGC
*
34377074 TAGTGTAAGACTTCTCTGGGACATGGCGTCAGCTTGCAGTGTGT
1 TAGTGTAAGACTTGTCTGGGACATGGCGTCAGCTTGCAGTGTGT
* * *
34377118 TAGTGTAAGGCATGTCTGGGACATGGCGTCAGCTTGTAGTGTGT
1 TAGTGTAAGACTTGTCTGGGACATGGCGTCAGCTTGCAGTGTGT
*
34377162 CAGTGTAAGACTTGTCTGGGACATGGC
1 TAGTGTAAGACTTGTCTGGGACATGGC
34377189 ATCGGCCTTG
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.19, C:0.17, G:0.34, T:0.30
Consensus pattern (44 bp):
TAGTGTAAGACTTGTCTGGGACATGGCGTCAGCTTGCAGTGTGT
Found at i:34378180 original size:13 final size:13
Alignment explanation
Indices: 34378162--34378186 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34378152 CCTCTGGCCA
34378162 TGGTCGTGTGCCT
1 TGGTCGTGTGCCT
34378175 TGGTCGTGTGCC
1 TGGTCGTGTGCC
34378187 CCTTATTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.24, G:0.40, T:0.36
Consensus pattern (13 bp):
TGGTCGTGTGCCT
Found at i:34384869 original size:25 final size:25
Alignment explanation
Indices: 34384835--34384885 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
34384825 TTGTTATGAC
34384835 ATTGTGAACAATATCCATTTAATAT
1 ATTGTGAACAATATCCATTTAATAT
34384860 ATTGTGAACAATATCCATTTAATAT
1 ATTGTGAACAATATCCATTTAATAT
34384885 A
1 A
34384886 CCTTCTAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (25 bp):
ATTGTGAACAATATCCATTTAATAT
Found at i:34386556 original size:18 final size:19
Alignment explanation
Indices: 34386521--34386556 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
34386511 TAAAGGTTTG
*
34386521 ATTCTTAGGTTTTTATTTC
1 ATTCTTAGGTTTTCATTTC
34386540 ATTCTTA-GTTTTCATTT
1 ATTCTTAGGTTTTCATTT
34386557 AGGTTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.17, C:0.11, G:0.08, T:0.64
Consensus pattern (19 bp):
ATTCTTAGGTTTTCATTTC
Found at i:34389969 original size:31 final size:30
Alignment explanation
Indices: 34389908--34389987 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 30
34389898 CGTTTTTGTT
34389908 GTTGTTTAAGG-TTTATTAATTAGGGTTTTAG
1 GTTGTTT-AGGTTTTATT-ATTAGGGTTTTAG
* *
34389939 GTTTTTTAGGATTTTATTATTATGGTTTTAG
1 GTTGTTTAGG-TTTTATTATTAGGGTTTTAG
34389970 GTTGTTTAGGTTTT-TTAT
1 GTTGTTTAGGTTTTATTAT
34389988 GATTTTAGGG
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
29 4 0.09
30 7 0.16
31 27 0.61
32 6 0.14
ACGTcount: A:0.19, C:0.00, G:0.23, T:0.59
Consensus pattern (30 bp):
GTTGTTTAGGTTTTATTATTAGGGTTTTAG
Found at i:34390006 original size:40 final size:39
Alignment explanation
Indices: 34389927--34390022 Score: 97
Period size: 40 Copynumber: 2.5 Consensus size: 39
34389917 GGTTTATTAA
** * *
34389927 TTAGGG-TTTTAGGTTTTTTAGGATTTTATTATTATGGTT
1 TTAGGGTTTTTAGGTTTTTTAGGATTTTAGGATCA-GGGT
* *
34389966 TTA-GGTTGTTTAGGTTTTTTATGATTTTAGGGTCAGGGT
1 TTAGGGTT-TTTAGGTTTTTTAGGATTTTAGGATCAGGGT
*
34390005 TTAGGGTTTTAAGGTTTT
1 TTAGGGTTTTTAGGTTTT
34390023 AAATTAATAA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
38 2 0.04
39 19 0.40
40 26 0.55
ACGTcount: A:0.17, C:0.01, G:0.27, T:0.55
Consensus pattern (39 bp):
TTAGGGTTTTTAGGTTTTTTAGGATTTTAGGATCAGGGT
Found at i:34390968 original size:37 final size:37
Alignment explanation
Indices: 34390909--34391054 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
34390899 AGCTCAGATG
* * *
34390909 AAATCTCCACACGAAGTTATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
34390946 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
34390983 TAATCTCCACACGTAGTCATCGGGTCTTACCGGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
34391020 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
34391055 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:34391325 original size:48 final size:48
Alignment explanation
Indices: 34391201--34391492 Score: 460
Period size: 48 Copynumber: 6.0 Consensus size: 48
34391191 ACACATCGCC
*
34391201 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
34391251 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
34391299 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * *
34391351 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
34391399 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
34391447 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
34391493 TATGCATTAA
Statistics
Matches: 225, Mismatches: 11, Indels: 14
0.90 0.04 0.06
Matches are distributed among these distances:
48 136 0.60
49 2 0.01
50 42 0.19
52 45 0.20
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:34391406 original size:100 final size:98
Alignment explanation
Indices: 34391201--34391492 Score: 498
Period size: 100 Copynumber: 3.0 Consensus size: 98
34391191 ACACATCGCC
*
34391201 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
* *
34391266 GACCATTCGGCTTTACCACATATGCATATCTCA
66 AACCATTCGGCTTTACCACATATACATATCTCA
34391299 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATATATATTTCACA
*
34391364 TTAACCATTCAGCTTTACCACATATACATATCTCA
64 TTAACCATTCGGCTTTACCACATATACATATCTCA
*
34391399 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
*
34391462 AGCCATTCGGCTTTACCACATATACATATCT
66 AACCATTCGGCTTTACCACATATACATATCT
34391493 TATGCATTAA
Statistics
Matches: 185, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
96 44 0.24
98 46 0.25
100 95 0.51
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (98 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
AACCATTCGGCTTTACCACATATACATATCTCA
Found at i:34391445 original size:148 final size:149
Alignment explanation
Indices: 34391204--34391492 Score: 501
Period size: 148 Copynumber: 1.9 Consensus size: 149
34391194 CATCGCCTAC
* * *
34391204 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTGAC
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCA-ATACATATTTCACATTGAC
*
34391269 CATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
65 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
34391334 TATACATATCTCATATATAT
130 TATACATATCTCATATATAT
*
34391354 ATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTC-ATACATATTTCACATT-AGC
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTGA-C
34391417 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
65 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
34391482 TATACATATCT
130 TATACATATCT
34391493 TATGCATTAA
Statistics
Matches: 133, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
147 1 0.01
148 91 0.68
150 41 0.31
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (149 bp):
ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTGACC
ATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
ATACATATCTCATATATAT
Found at i:34398114 original size:46 final size:46
Alignment explanation
Indices: 34398064--34398236 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
34398054 TGGTTGAGCA
34398064 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
34398110 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
34398155 CATCTGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
34398203 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
34398237 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.57
47 26 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34398220 original size:93 final size:93
Alignment explanation
Indices: 34398061--34398231 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
34398051 GGATGGTTGA
* *
34398061 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
34398126 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
34398154 GCATCTGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
34398219 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
34398232 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:34399872 original size:33 final size:33
Alignment explanation
Indices: 34399835--34399923 Score: 101
Period size: 33 Copynumber: 2.7 Consensus size: 33
34399825 GCGCGGGTTC
* * *
34399835 TGTGAAATGATGACAAATATCAGCTGTTCA-TTT
1 TGTGAAATGATAACAAATATCA-ATGTTAATTTT
*
34399868 TGTGAAATTATAACAAAT-TACAATGTTAATTTT
1 TGTGAAATGATAACAAATAT-CAATGTTAATTTT
*
34399901 TGTAAAATGATAACAAATATCAA
1 TGTGAAATGATAACAAATATCAA
34399924 CTAGAAAATA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
32 6 0.13
33 40 0.85
34 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (33 bp):
TGTGAAATGATAACAAATATCAATGTTAATTTT
Found at i:34403686 original size:18 final size:18
Alignment explanation
Indices: 34403655--34403702 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
34403645 TATGTTTATT
34403655 AATTAAAAATTAAAA-AAA
1 AATTAAAAA-TAAAATAAA
34403673 AACTTAAAAATAAAATAAA
1 AA-TTAAAAATAAAATAAA
*
34403692 AATTATAAATA
1 AATTAAAAATA
34403703 TGTTTGGAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (18 bp):
AATTAAAAATAAAATAAA
Found at i:34403758 original size:30 final size:30
Alignment explanation
Indices: 34403722--34403782 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
34403712 GGAGGAAATT
34403722 GAGCTTGGTCTTAATGATAAAATCAACTAA
1 GAGCTTGGTCTTAATGATAAAATCAACTAA
34403752 GAGCTTGGTCTTAATGATAAAATCAACTAA
1 GAGCTTGGTCTTAATGATAAAATCAACTAA
34403782 G
1 G
34403783 GGAATTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (30 bp):
GAGCTTGGTCTTAATGATAAAATCAACTAA
Found at i:34408793 original size:2 final size:2
Alignment explanation
Indices: 34408788--34408818 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
34408778 ATATATGAAG
34408788 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
34408819 AGCTTACAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:34410855 original size:20 final size:20
Alignment explanation
Indices: 34410830--34410868 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
34410820 TGTAACATAT
34410830 ATCATGAACTCAGACCACAA
1 ATCATGAACTCAGACCACAA
* *
34410850 ATCATGAGCTCAGATCACA
1 ATCATGAACTCAGACCACA
34410869 TAGTTCCTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.28, G:0.13, T:0.18
Consensus pattern (20 bp):
ATCATGAACTCAGACCACAA
Found at i:34412846 original size:39 final size:40
Alignment explanation
Indices: 34412751--34412971 Score: 260
Period size: 39 Copynumber: 5.7 Consensus size: 40
34412741 TCGAATGATG
* *
34412751 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
34412790 ACCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
34412830 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
34412869 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-TTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
34412908 TCCGGGTTAAGT-CCGAAGGCA-TTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
34412945 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
34412972 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
37 9 0.06
38 23 0.14
39 87 0.55
40 40 0.25
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:34412924 original size:78 final size:78
Alignment explanation
Indices: 34412751--34412971 Score: 288
Period size: 78 Copynumber: 2.8 Consensus size: 78
34412741 TCGAATGATG
* * * *
34412751 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAT-ACCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATT
*
34412814 TGTGCGAGTTACTAAT
63 TGTGCGAGTTACTAAA
*
34412830 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATT-GTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTT
34412894 GTGCGA-TTACTAAA
64 GTGCGAGTTACTAAA
* * *
34412908 TCCGGGTTAAGTCCGAAGGCATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
34412972 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 36 0.28
78 50 0.39
79 41 0.32
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTAAA
Found at i:34421001 original size:79 final size:80
Alignment explanation
Indices: 34420866--34421089 Score: 305
Period size: 79 Copynumber: 2.8 Consensus size: 80
34420856 TCGAATGATG
* * * *
34420866 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCC-GACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
34420928 TTGTGCGAGTTACTAAT
64 TTGTGCGAGTTACTAAA
* *
34420945 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
34421009 GTGCGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
34421024 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
34421088 TG
65 TG
34421090 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
78 21 0.16
79 58 0.45
80 48 0.37
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:34421103 original size:40 final size:40
Alignment explanation
Indices: 34420866--34421089 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
34420856 TCGAATGATG
* * *
34420866 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
34420906 TCC-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34420945 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34420984 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34421024 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
34421065 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34421090 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
39 59 0.36
40 105 0.63
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:34426951 original size:40 final size:39
Alignment explanation
Indices: 34426907--34427035 Score: 111
Period size: 40 Copynumber: 3.3 Consensus size: 39
34426897 GACTCGCTCA
*
34426907 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
34426946 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
* * * * ** *
34426986 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
34427024 GAATGCCTTCGG
1 -AATGCCTTCGG
34427036 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 28 0.36
41 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:34427035 original size:78 final size:80
Alignment explanation
Indices: 34426942--34427088 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 80
34426932 ATAGCGACTT
* * *
34426942 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
34427004 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
34427020 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
34427085 CGGA
66 CGGA
34427089 CATCATTCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.50
79 17 0.28
80 10 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:34427072 original size:40 final size:37
Alignment explanation
Indices: 34426923--34427088 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 37
34426913 TTCGGGACGA
* ** *
34426923 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
34426963 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
34427001 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
34427041 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTC-GGA-TT
34427081 AGCCCGGA
1 AGCCCGGA
34427089 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 25 0.25
39 20 0.20
40 49 0.48
41 7 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:34429629 original size:51 final size:51
Alignment explanation
Indices: 34429532--34429630 Score: 119
Period size: 51 Copynumber: 1.9 Consensus size: 51
34429522 TCGGTTACTT
* * * *
34429532 ATTGGCACTAGGTGTGCTAAATTAAAATAGCTTCAGTTATAAATATTGTAC
1 ATTGGCACTAAGTGTGCGAAACTAAAATAGCTTCAGCTATAAATATTGTAC
* * *
34429583 ATTGGCACTAAGTGTGCGAGACTAAGATAGCTTCGGCTA-AATATATTG
1 ATTGGCACTAAGTGTGCGAAACTAAAATAGCTTCAGCTATAA-ATATTG
34429631 GCACTAAGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 2 0.05
51 38 0.95
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.32
Consensus pattern (51 bp):
ATTGGCACTAAGTGTGCGAAACTAAAATAGCTTCAGCTATAAATATTGTAC
Found at i:34429688 original size:47 final size:48
Alignment explanation
Indices: 34429623--34429739 Score: 137
Period size: 48 Copynumber: 2.5 Consensus size: 48
34429613 CTTCGGCTAA
* **
34429623 ATATATTGGCACTAAGTGTGCGTGA-CCAGATAACTTTGGCTATATAC
1 ATATATTGGCACTTAGTGTGCGTGATCCAGATAACTCCGGCTATATAC
** ** * *
34429670 ATATATTGGCACTTAGTGTATGTGATTGAGATAGCTCCGGCTATATAT
1 ATATATTGGCACTTAGTGTGCGTGATCCAGATAACTCCGGCTATATAC
*
34429718 ACATATTGGCACTTAGTGTGCG
1 ATATATTGGCACTTAGTGTGCG
34429740 AGATTGATAT
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
47 22 0.39
48 35 0.61
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.34
Consensus pattern (48 bp):
ATATATTGGCACTTAGTGTGCGTGATCCAGATAACTCCGGCTATATAC
Found at i:34429724 original size:48 final size:48
Alignment explanation
Indices: 34429660--34429761 Score: 141
Period size: 48 Copynumber: 2.1 Consensus size: 48
34429650 AGATAACTTT
* * *
34429660 GGCTATATACATATATTGGCACTTAGTGTATGTGATTGAGATAGCTCC
1 GGCTATATACACATATTGGCACTTAGTGTACGAGATTGAGATAGCTCC
* * * *
34429708 GGCTATATATACATATTGGCACTTAGTGTGCGAGATTGATATAGCTTC
1 GGCTATATACACATATTGGCACTTAGTGTACGAGATTGAGATAGCTCC
34429756 GGCTAT
1 GGCTAT
34429762 TTATTTGACA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (48 bp):
GGCTATATACACATATTGGCACTTAGTGTACGAGATTGAGATAGCTCC
Found at i:34430739 original size:18 final size:18
Alignment explanation
Indices: 34430716--34430754 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
34430706 GTGTATATTG
34430716 CTTTGTAAAATGACATAT
1 CTTTGTAAAATGACATAT
34430734 CTTTGTAAAATGACATAT
1 CTTTGTAAAATGACATAT
34430752 CTT
1 CTT
34430755 GGTATGATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (18 bp):
CTTTGTAAAATGACATAT
Found at i:34434617 original size:81 final size:81
Alignment explanation
Indices: 34434480--34434720 Score: 315
Period size: 81 Copynumber: 3.0 Consensus size: 81
34434470 GGCAAATAAG
* * * * *
34434480 TCATTTTACCTTACAGGGGTATTACAGTCATTTTAGCTTATAAGGGTATTTCAGTCATTTTACCC
1 TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTA-AAGGGTATTTCAGTCATTTTACCC
34434545 TATGAGGGTATTTCGAT
65 TATGAGGGTATTTCGAT
* * *
34434562 T-ATTTTACCCTATAGGGGTATTTCGGTGATTTTACCCTACAAGGGTATTACAGTCATTTTACCC
1 TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTA-AAGGGTATTTCAGTCATTTTACCC
** *
34434626 TACAAGGGTATTAC-AT
65 TATGAGGGTATTTCGAT
* ** *
34434642 TCATTTTACCTTATAGGGGTATTTTGGTCATTTTACCCTATGGGGAATTTCAGTCATTTTACCCT
1 TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTAAAGGGTATTTCAGTCATTTTACCCT
34434707 ATGAGGGTATTTCG
66 ATGAGGGTATTTCG
34434721 GCCATTTTTT
Statistics
Matches: 135, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
80 34 0.25
81 100 0.74
82 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (81 bp):
TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTAAAGGGTATTTCAGTCATTTTACCCT
ATGAGGGTATTTCGAT
Found at i:34434726 original size:27 final size:27
Alignment explanation
Indices: 34434478--34434728 Score: 254
Period size: 27 Copynumber: 9.3 Consensus size: 27
34434468 TAGGCAAATA
* * * *
34434478 AGTCATTTTACCTTACAGGGGTATTAC
1 AGTCATTTTACCCTATAAGGGTATTTC
* *
34434505 AGTCATTTTAGCTTATAAGGGTATTTC
1 AGTCATTTTACCCTATAAGGGTATTTC
*
34434532 AGTCATTTTACCCTATGAGGGTATTTC
1 AGTCATTTTACCCTATAAGGGTATTTC
* *
34434559 -GATTATTTTACCCTATAGGGGTATTTC
1 AG-TCATTTTACCCTATAAGGGTATTTC
* * * *
34434586 GGTGATTTTACCCTACAAGGGTATTAC
1 AGTCATTTTACCCTATAAGGGTATTTC
* *
34434613 AGTCATTTTACCCTACAAGGGTATTAC
1 AGTCATTTTACCCTATAAGGGTATTTC
* * * *
34434640 ATTCATTTTACCTTATAGGGGTATTTT
1 AGTCATTTTACCCTATAAGGGTATTTC
* * *
34434667 GGTCATTTTACCCTAT-GGGGAATTTC
1 AGTCATTTTACCCTATAAGGGTATTTC
*
34434693 AGTCATTTTACCCTATGAGGGTATTTC
1 AGTCATTTTACCCTATAAGGGTATTTC
* *
34434720 GGCCATTTT
1 AGTCATTTT
34434729 TTTCGGCCCA
Statistics
Matches: 189, Mismatches: 32, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
26 24 0.13
27 164 0.87
28 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (27 bp):
AGTCATTTTACCCTATAAGGGTATTTC
Found at i:34442515 original size:20 final size:20
Alignment explanation
Indices: 34442486--34442530 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
34442476 AGCACATGTA
* *
34442486 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
34442506 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
34442526 TTCAT
1 TTCAT
34442531 TTTAGCCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:34444900 original size:25 final size:25
Alignment explanation
Indices: 34444872--34444966 Score: 163
Period size: 25 Copynumber: 3.8 Consensus size: 25
34444862 CTCTTTTAAT
* * *
34444872 AACTGGGACAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
34444897 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
34444922 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
34444947 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
34444967 AGCACTTCCT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:34444902 original size:50 final size:50
Alignment explanation
Indices: 34444859--34444966 Score: 148
Period size: 50 Copynumber: 2.2 Consensus size: 50
34444849 CTGGAGGCCT
*
34444859 AGCCTCTTTT-AAT-AACTGGGACAAAGCCCTTTTTGATAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGACAAAGCCCTTTTCGATAAACTGGGGCAA
** * *
34444908 AGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGACAAAGCCCTTTTCGATAAACTGGGGCAA
34444958 AGCCCTTTT
1 AGCCCTTTT
34444967 AGCACTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
48 5 0.10
49 5 0.10
50 42 0.81
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (50 bp):
AGCCCTTTTCAATAAACTGGGACAAAGCCCTTTTCGATAAACTGGGGCAA
Found at i:34445201 original size:27 final size:27
Alignment explanation
Indices: 34445171--34445576 Score: 578
Period size: 27 Copynumber: 15.0 Consensus size: 27
34445161 GGGGCAAAAT
* * * *
34445171 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
34445198 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
34445225 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34445252 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
34445279 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
34445306 AGTAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34445333 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34445360 GGTAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34445387 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
34445414 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
34445441 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
34445468 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34445495 GGTAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34445522 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34445549 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
34445576 G
1 G
34445577 ATATTTTACA
Statistics
Matches: 342, Mismatches: 37, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 342 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:34445625 original size:27 final size:27
Alignment explanation
Indices: 34445540--34445708 Score: 148
Period size: 27 Copynumber: 6.3 Consensus size: 27
34445530 TACCCTACAA
* **
34445540 GGGTATTTCGATAATTCTACCCTA-CAG
1 GGGTATTTCGATAATTTTA-CAAACCAG
*
34445567 GGGTATTTCGAT-ATTTTACAAATC-G
1 GGGTATTTCGATAATTTTACAAACCAG
* * **
34445592 AGAGTATTTCGATAATTTCACAAATTAG
1 -GGGTATTTCGATAATTTTACAAACCAG
* * * *
34445620 GGGTATTTTGGTAATTTTACAAGCCAA
1 GGGTATTTCGATAATTTTACAAACCAG
* *
34445647 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTCGATAATTTTACAAACCAG
*
34445674 GGGTATTT-TAGTAATTTTACAAACCAG
1 GGGTATTTCGA-TAATTTTACAAACCAG
34445701 GGGTATTT
1 GGGTATTT
34445709 TACTGATCGA
Statistics
Matches: 119, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.03
26 17 0.14
27 98 0.82
28 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAACCAG
Found at i:34445662 original size:54 final size:54
Alignment explanation
Indices: 34445579--34445709 Score: 163
Period size: 54 Copynumber: 2.4 Consensus size: 54
34445569 GTATTTCGAT
* * * * ** *
34445579 ATTTTACAAATCGAGAGTATTTCGATAATTTCACAAATTAGGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGATAATTTCACAAACCAGGGGTATTTTAGTA
* * *
34445633 ATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGATAATTTCACAAACCAGGGGTATTTTAGTA
*
34445687 ATTTTACAAACCAGGGGTATTTT
1 ATTTTACAAACCAAGGGTATTTT
34445710 ACTGATCGAG
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (54 bp):
ATTTTACAAACCAAGGGTATTTTGATAATTTCACAAACCAGGGGTATTTTAGTA
Found at i:34445709 original size:27 final size:27
Alignment explanation
Indices: 34445604--34445710 Score: 151
Period size: 27 Copynumber: 4.0 Consensus size: 27
34445594 AGTATTTCGA
* ** *
34445604 TAATTTCACAAATTAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTAG
* * *
34445631 TAATTTTACAAGCCAAGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTAG
34445658 TAATTTTACAAACCAGGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTAG
34445685 TAATTTTACAAACCAGGGGTATTTTA
1 TAATTTTACAAACCAGGGGTATTTTA
34445711 CTGATCGAGG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAACCAGGGGTATTTTAG
Found at i:34445710 original size:45 final size:45
Alignment explanation
Indices: 34445660--34445754 Score: 104
Period size: 45 Copynumber: 2.1 Consensus size: 45
34445650 TATTTTGGTA
34445660 ATTTTACAAACC-AGGGGTATTTTAGTAATTTTACAAACC-AGGGGT
1 ATTTTACAAACCGA-GGGTATTTTAGTAATTTTACAAACCGA-GGGT
** * * **
34445705 ATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCGAGGGT
1 ATTTTACAAACCGAGGGTATTTTAGTAATTTTACAAACCGAGGGT
34445750 ATTTT
1 ATTTT
34445755 GGTAATTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
45 40 0.95
46 2 0.05
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (45 bp):
ATTTTACAAACCGAGGGTATTTTAGTAATTTTACAAACCGAGGGT
Found at i:34445735 original size:27 final size:27
Alignment explanation
Indices: 34445716--34445831 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 27
34445706 TTTTACTGAT
*
34445716 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CGAGGGTATTTTGGTAATTTTCTAAAC
*
34445743 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CGAGGGTATTTTGGTAATTTTCTAAAC
* * * *
34445770 CAAGGGTATTTTAGTAATTTTATAAAT
1 CGAGGGTATTTTGGTAATTTTCTAAAC
*** * *
34445797 CGAGGGTAAAATGGTAATTTTGTAAAT
1 CGAGGGTATTTTGGTAATTTTCTAAAC
34445824 CGAGGGTA
1 CGAGGGTA
34445832 AAATGGTAAT
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (27 bp):
CGAGGGTATTTTGGTAATTTTCTAAAC
Found at i:34445750 original size:72 final size:72
Alignment explanation
Indices: 34445646--34445782 Score: 204
Period size: 72 Copynumber: 1.9 Consensus size: 72
34445636 TTACAAGCCA
*
34445646 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTA
1 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTA
34445711 CTGATCG
66 CTGATCG
** * **
34445718 AGGGTATTTTGGTAATTTTGTAAACC-GAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTT
1 AGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
34445782 A
65 A
34445783 GTAATTTTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
71 1 0.02
72 57 0.98
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.39
Consensus pattern (72 bp):
AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTA
CTGATCG
Found at i:34445777 original size:54 final size:54
Alignment explanation
Indices: 34445718--34446318 Score: 293
Period size: 54 Copynumber: 11.1 Consensus size: 54
34445708 TTACTGATCG
* ***
34445718 AGGGTATTTTGGTAATTTTGTAAACCGAGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACCA
* * * *
34445772 AGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACCA
*** * * * * * *
34445826 AGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACCA
*** * * * * ***
34445880 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATTG
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACCA
*** * * * * *
34445934 AGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTTCTATAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTT-TGTAAACCA
*** * * * * * * * *
34445989 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGCAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACCA
*** * *** * * * *
34446043 AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACCA
**** * * * * * * *
34446097 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACCA
*** * * ** * * * *
34446151 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACCA
* *** * * * * * * * *
34446205 AGAGTAAAATGGTAATTCTATAAATCGAAGGTAAAACGATAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACCA
*** * * * * * *
34446259 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACCA
34446313 AGGGTA
1 AGGGTA
34446319 AAACGGTAAT
Statistics
Matches: 497, Mismatches: 49, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
54 449 0.90
55 48 0.10
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACCA
Found at i:34445832 original size:27 final size:27
Alignment explanation
Indices: 34445783--34446345 Score: 838
Period size: 27 Copynumber: 20.8 Consensus size: 27
34445773 GGGTATTTTA
*
34445783 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
34445810 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
34445837 GTAATTCTGTAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
34445864 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
34445891 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
34445918 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
34445945 GTAATTCTGTAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
34445972 GTAATTTCTATAAATCGAGGGTAAAATG
1 GTAA-TTCTATAAATCGAGGGTAAAATG
*
34446000 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* **
34446027 ATAATTCTGCAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* **
34446054 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
34446081 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
34446108 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
34446135 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
**
34446162 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
34446189 GTAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
34446216 GTAATTCTATAAATCGAAGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
34446243 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
34446270 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
34446297 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
34446324 GTAATTTTACAAATTGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
34446346 TTTCAATAAT
Statistics
Matches: 490, Mismatches: 45, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
27 465 0.95
28 25 0.05
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:34447988 original size:25 final size:25
Alignment explanation
Indices: 34447957--34448026 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
34447947 CTCTTTCAAT
*
34447957 AACTGGGGCAAAGCCATTTTTGA-TA
1 AACTGGGGCAAAGCC-TTTTTCAGTA
* *
34447982 AATTGGGGCAAAGCCCTTTTCAGTA
1 AACTGGGGCAAAGCCTTTTTCAGTA
*
34448007 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCTTTTT
34448027 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 5 0.12
25 35 0.88
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCTTTTTCAGTA
Found at i:34448264 original size:27 final size:27
Alignment explanation
Indices: 34448234--34448446 Score: 257
Period size: 27 Copynumber: 7.9 Consensus size: 27
34448224 GCAAAATGGC
* * * *
34448234 AATTTTACCCCACAAGGGTATCTCGGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* *
34448261 AATTCTACCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCAGT
*
34448288 ATTTCTACCCTACAAGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* *
34448315 AATTCTACGCTACAGGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* * * **
34448342 AATTCTACCTTATAGGGGTATTTTGGT
1 AATTCTACCCTACAAGGGTATTTCAGT
34448369 AATTCTACCCTAC-AGGGTTATTTCAGT
1 AATTCTACCCTACAAGGG-TATTTCAGT
* *
34448396 AATTCTACCCTACAGGGGTATTTTAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
*
34448423 AATTCTACCCTACAGGGGTATTTC
1 AATTCTACCCTACAAGGGTATTTC
34448447 GATATTTTAT
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 3 0.02
27 155 0.96
28 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
AATTCTACCCTACAAGGGTATTTCAGT
Found at i:34448391 original size:81 final size:81
Alignment explanation
Indices: 34448234--34448447 Score: 313
Period size: 81 Copynumber: 2.6 Consensus size: 81
34448224 GCAAAATGGC
* * * * * *
34448234 AATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
1 AATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCT
34448299 ACAAGGGTATTTCAGT
66 ACAAGGGTATTTCAGT
* * * *
34448315 AATTCTACGCTACAGGGGTATTTCAGTAATTCTACCTTATAGGGGTATTTTGGTAATTCTACCCT
1 AATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCT
34448380 AC-AGGGTTATTTCAGT
66 ACAAGGG-TATTTCAGT
*
34448396 AATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCG
1 AATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCG
34448448 ATATTTTATA
Statistics
Matches: 117, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
80 4 0.03
81 113 0.97
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (81 bp):
AATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCT
ACAAGGGTATTTCAGT
Found at i:34448445 original size:54 final size:54
Alignment explanation
Indices: 34448259--34448446 Score: 295
Period size: 54 Copynumber: 3.5 Consensus size: 54
34448249 GGGTATCTCG
* * * *
34448259 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTA
* * * *
34448313 GTAATTCTACGCTACAGGGGTATTTCAGTAATTCTACCTTATAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTA
*
34448367 GTAATTCTACCCTACAGGGTTATTTCAGTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTA
34448421 GTAATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
34448447 GATATTTTAT
Statistics
Matches: 120, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 120 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTA
Found at i:34448533 original size:54 final size:54
Alignment explanation
Indices: 34448435--34448642 Score: 197
Period size: 54 Copynumber: 3.9 Consensus size: 54
34448425 TTCTACCCTA
* * * * * * * * *
34448435 CAGGGGTATTTCGAT-ATTTTATAAATCGAGAGTATTTCGATAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAT
* **
34448488 CAGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAT
* * * ***
34448542 CAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAT
** *
34448596 C-GAGGGTA-TTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 CAG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT
34448643 GTAAATCGAG
Statistics
Matches: 126, Mismatches: 27, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
53 47 0.37
54 79 0.63
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAT
Found at i:34448573 original size:81 final size:80
Alignment explanation
Indices: 34448475--34448642 Score: 230
Period size: 81 Copynumber: 2.1 Consensus size: 80
34448465 AGTATTTCGA
* *
34448475 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAG-CCAAGGGTATTTTGGTAATTTTACA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTA-AAGACCAAGGGTA-TTTGGTAATTTTACA
*
34448539 AGCCAAGGGTATTTTAG
64 AACCAAGGGTATTTTAG
** * * **
34448556 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTGGTAATTTTGTAAA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTAAAGACCAAGGGTATTTGGTAATTTTACAAA
34448621 CCAAGGGTATTTTAG
66 CCAAGGGTATTTTAG
34448636 TAATTTT
1 TAATTTT
34448643 GTAAATCGAG
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
80 37 0.48
81 40 0.52
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (80 bp):
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTAAAGACCAAGGGTATTTGGTAATTTTACAAA
CCAAGGGTATTTTAG
Found at i:34448602 original size:27 final size:27
Alignment explanation
Indices: 34448450--34448818 Score: 172
Period size: 27 Copynumber: 13.7 Consensus size: 27
34448440 GTATTTCGAT
* *
34448450 ATTTTATAAATCGAGAGTA-TTTCGATA
1 ATTTTATAAATCGAGGGTATTTTAG-TA
* * *
34448477 ATTTCACAAATC-AGGGGTATTTTGGTA
1 ATTTTATAAATCGA-GGGTATTTTAGTA
* ** * *
34448504 ATTTTACAAGCCAAGGGTATTTTGGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* ** *
34448531 ATTTTACAAGCCAAGGGTATTTTAGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* * *
34448558 ATTTTACAAA-CCAGGGGTATTTTGGTA
1 ATTTTATAAATCGA-GGGTATTTTAGTA
** *
34448585 ATTTTATTGATCGAGGGTA-TTTGGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* * *
34448611 ATTTTGTAAACCAAGGGTATTTTAGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* **
34448638 ATTTTGTAAATCGAGGGTAAATTAGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* *****
34448665 ATTCTATAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* *****
34448692 ATTCTATAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* *** *
34448719 ATTCTATAAATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* * * ***
34448746 ATTCTGTAAATTGAGGGTAAAAT-GATA
1 ATTTTATAAATCGAGGGTATTTTAG-TA
* *** *
34448773 ATTCTATAAATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
*
34448800 ATTCTATAAATCGAGGGTA
1 ATTTTATAAATCGAGGGTA
34448819 AAACGATAAT
Statistics
Matches: 299, Mismatches: 35, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
26 25 0.08
27 266 0.89
28 8 0.03
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.35
Consensus pattern (27 bp):
ATTTTATAAATCGAGGGTATTTTAGTA
Found at i:34448639 original size:53 final size:54
Alignment explanation
Indices: 34448491--34448710 Score: 208
Period size: 54 Copynumber: 4.1 Consensus size: 54
34448481 CACAAATCAG
* * ** *
34448491 GGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAAGCCAA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCGA
* * **
34448545 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCGA
** * *
34448599 GGGTA-TTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCGA
** * * * * * **** *
34448652 GGGTAAATTAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCGA
34448706 GGGTA
1 GGGTA
34448711 AAACGGTAAT
Statistics
Matches: 135, Mismatches: 30, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
53 45 0.33
54 90 0.67
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.37
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCGA
Found at i:34448656 original size:80 final size:81
Alignment explanation
Indices: 34448475--34448683 Score: 233
Period size: 80 Copynumber: 2.6 Consensus size: 81
34448465 AGTATTTCGA
* * * ** *
34448475 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAA
*
34448540 GCCAAGGGTATTTTAG
66 ACCAAGGGTATTTTAG
** **
34448556 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCGAGGGTA-TTTGGTAATTTTGTAA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAA
34448620 ACCAAGGGTATTTTAG
66 ACCAAGGGTATTTTAG
** * ** * *
34448636 TAATTTTGTAAATC-GAGGGTAAATTAGTAATTCTATAAATCGAGGGTA
1 TAATTTTACAAACCAG-GGGTATTTTGGTAATTTTATAAATCGAGGGTA
34448684 AAACGGTAAT
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
79 1 0.01
80 66 0.62
81 40 0.37
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.38
Consensus pattern (81 bp):
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAA
ACCAAGGGTATTTTAG
Found at i:34449107 original size:27 final size:27
Alignment explanation
Indices: 34448635--34449099 Score: 669
Period size: 27 Copynumber: 17.2 Consensus size: 27
34448625 GGGTATTTTA
* * * *
34448635 GTAATTTTGTAAATCGAGGGTAAATTA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
34448662 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
34448689 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
34448716 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
34448743 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
34448770 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
34448797 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
34448824 ATAATTCTGTAAATCGAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
34448851 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
34448878 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
34448905 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
34448932 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
34448959 ATAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
34448986 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
34449013 ATAATTCTGTATATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
34449040 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
34449067 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
34449094 GTAATT
1 GTAATT
34449100 TTACAAATTA
Statistics
Matches: 390, Mismatches: 48, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 390 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:34450230 original size:18 final size:18
Alignment explanation
Indices: 34450209--34450259 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
34450199 ACAATTCTTT
34450209 TCTCTTCTTATTTTCTCC
1 TCTCTTCTTATTTTCTCC
*
34450227 TCTCTTCATCTA-TTTCTTC
1 TCTCTTC-T-TATTTTCTCC
*
34450246 T-TCTTCTTCTTTTC
1 TCTCTTCTTATTTTC
34450260 CTCTATAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
16 1 0.04
17 5 0.18
18 12 0.43
19 8 0.29
20 2 0.07
ACGTcount: A:0.06, C:0.31, G:0.00, T:0.63
Consensus pattern (18 bp):
TCTCTTCTTATTTTCTCC
Found at i:34451502 original size:28 final size:27
Alignment explanation
Indices: 34451461--34451577 Score: 128
Period size: 28 Copynumber: 4.3 Consensus size: 27
34451451 TGGAGGAAGC
34451461 GTTCTGGTGGCTTTGCCACAAATATCT
1 GTTCTGGTGGCTTTGCCACAAATATCT
34451488 GCTTCTGGTGGCTTTGCCACAAATATCT
1 G-TTCTGGTGGCTTTGCCACAAATATCT
* ** *
34451516 GTTTTTGGTGGCCCTGCCACAATTATCT
1 G-TTCTGGTGGCTTTGCCACAAATATCT
* * **
34451544 GTATCTGGTGACTCTATCAC-AATATCT
1 GT-TCTGGTGGCTTTGCCACAAATATCT
34451571 GTTCTGG
1 GTTCTGG
34451578 CAGCGATGCT
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.06
27 10 0.13
28 62 0.81
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
GTTCTGGTGGCTTTGCCACAAATATCT
Found at i:34457531 original size:40 final size:40
Alignment explanation
Indices: 34457404--34457533 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
34457394 ATGCTGGAAA
* *
34457404 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
34457444 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
34457484 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
34457524 TTATATCCGG
1 TTATATCCGG
34457534 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:34461920 original size:31 final size:31
Alignment explanation
Indices: 34461879--34461942 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
34461869 CCTTTTCATA
*
34461879 TTTCATATTTCACAACACTGGGCCGAAGCCT
1 TTTCAAATTTCACAACACTGGGCCGAAGCCT
* ** *
34461910 TTTCAAATTTCATATTACTGGGCTGAAGCCT
1 TTTCAAATTTCACAACACTGGGCCGAAGCCT
34461941 TT
1 TT
34461943 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCACAACACTGGGCCGAAGCCT
Found at i:34462225 original size:24 final size:24
Alignment explanation
Indices: 34462133--34462298 Score: 259
Period size: 23 Copynumber: 7.0 Consensus size: 24
34462123 GCTTTATCAT
*
34462133 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
34462158 ACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
34462181 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
34462204 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
34462227 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
34462251 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
34462275 ATAACTGGGGCATGAAGCCCTTTT
1 ATAACTGGGGCAT-AAGCCCTTTT
34462299 TGCATTTCCT
Statistics
Matches: 134, Mismatches: 3, Indels: 8
0.92 0.02 0.06
Matches are distributed among these distances:
23 63 0.47
24 54 0.40
25 17 0.13
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:34462244 original size:47 final size:48
Alignment explanation
Indices: 34462133--34462298 Score: 259
Period size: 47 Copynumber: 3.5 Consensus size: 48
34462123 GCTTTATCAT
* *
34462133 ATAACTGGAGGCCT-AGCCTCTTTTAACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
34462181 ATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
34462227 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
34462275 ATAACTGGGGCATGAAGCCCTTTT
1 ATAACTGGGGCAT-AAGCCCTTTT
34462299 TGCATTTCCT
Statistics
Matches: 111, Mismatches: 2, Indels: 9
0.91 0.02 0.07
Matches are distributed among these distances:
46 33 0.30
47 43 0.39
48 25 0.23
49 10 0.09
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:34462374 original size:20 final size:20
Alignment explanation
Indices: 34462349--34462415 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
34462339 TTATGATTAC
34462349 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
34462369 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
34462389 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
34462409 ACCATGT
1 ATCATGT
34462416 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:34462380 original size:11 final size:11
Alignment explanation
Indices: 34462349--34462404 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
34462339 TTATGATTAC
34462349 ATCATGTGCAT
1 ATCATGTGCAT
*
34462360 ATCA--TACAT
1 ATCATGTGCAT
34462369 ATCATGTGCAT
1 ATCATGTGCAT
*
34462380 ATCA--TACAT
1 ATCATGTGCAT
*
34462389 GTCATGTGCAT
1 ATCATGTGCAT
34462400 ATCAT
1 ATCAT
34462405 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:34463757 original size:27 final size:27
Alignment explanation
Indices: 34463737--34464055 Score: 392
Period size: 27 Copynumber: 11.9 Consensus size: 27
34463727 AGGGTATTTT
*
34463737 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
34463764 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
34463791 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
34463818 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
34463845 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
34463872 -GATAATTATGTAAATCGGGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * * *
34463899 GGTAATTATGTAAATTGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
34463926 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
34463953 AGTAATT-TGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
34463979 TGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
34464006 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
34464033 GGTAATTCTATAAATCAAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
34464056 CTTTGGTAAT
Statistics
Matches: 260, Mismatches: 27, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
25 1 0.00
26 22 0.08
27 235 0.90
28 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:34464063 original size:27 final size:27
Alignment explanation
Indices: 34464006--34464256 Score: 220
Period size: 27 Copynumber: 9.3 Consensus size: 27
34463996 AGGGTAAAAC
* ****
34464006 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCAAGGGTATTTT
* * *
34464033 GGTAATTCTATAAATCAAGGGTACTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
* *
34464060 GGTAATTTTACAAGTCAAGGGTATTTC
1 GGTAATTTTACAAATCAAGGGTATTTT
** ** * *
34464087 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCAAGGGTATTTT
* * * * *
34464114 AGTAATTTCACAAATTAGGGGTACTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
*
34464141 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATC-AAGGGTATTTT
*
34464168 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATC-AAGGGTATTTT
* *
34464195 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
* *
34464222 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
34464248 GGTAATTTT
1 GGTAATTTT
34464257 GTAAACCAAA
Statistics
Matches: 187, Mismatches: 35, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
26 18 0.10
27 168 0.90
28 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCAAGGGTATTTT
Found at i:34464094 original size:134 final size:134
Alignment explanation
Indices: 34463748--34464082 Score: 393
Period size: 134 Copynumber: 2.5 Consensus size: 134
34463738 GTAATTTTGT
* * * * * *
34463748 AAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGT
1 AAATCGAGGGTAAAACGGTAATTATATAAATCAAGGGTAAAACGGTAATTCTACAAATCAAGGGT
**
34463813 AAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAAT
66 AAAATAATAATT-TGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAAT
**
34463878 TATGT
130 TATAC
* * *** * *
34463883 AAATCGGGGGTAAAACGGTAATTATGTAAATTGGGGGTAAAACGGTAATTCTATAAATCGAGGGT
1 AAATCGAGGGTAAAACGGTAATTATATAAATCAAGGGTAAAACGGTAATTCTACAAATCAAGGGT
* * *
34463948 AAAATAGTAATTTGTAAA-CTGAGGGTAAAACTGTAATTCTGTAAATCGAGGGTAAAACGGTAAT
66 AAAATAATAATTTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAAT
*
34464012 TTTAC
130 TATAC
* **** * *
34464017 AAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTACTTTGGTAATTTTACAAGTCAAGGGT
1 AAATCGAGGGTAAAACGGTAATTATATAAATCAAGGGTAAAACGGTAATTCTACAAATCAAGGGT
34464082 A
66 A
34464083 TTTCAATAAT
Statistics
Matches: 172, Mismatches: 27, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
133 1 0.01
134 102 0.59
135 69 0.40
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (134 bp):
AAATCGAGGGTAAAACGGTAATTATATAAATCAAGGGTAAAACGGTAATTCTACAAATCAAGGGT
AAAATAATAATTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATT
ATAC
Found at i:34464270 original size:26 final size:26
Alignment explanation
Indices: 34464133--34464271 Score: 143
Period size: 27 Copynumber: 5.2 Consensus size: 26
34464123 ACAAATTAGG
* * *
34464133 GGTACTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
34464160 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
34464187 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* * *
34464213 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
**
34464240 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
34464266 AGTATT
1 GGTATT
34464272 CTAAATGGAT
Statistics
Matches: 97, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
26 26 0.27
27 71 0.73
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:34467087 original size:30 final size:31
Alignment explanation
Indices: 34467047--34467109 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
34467037 CCTTTTCATA
*
34467047 TTTCATATTTCATAACACT-GGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
34467077 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
34467108 TT
1 TT
34467110 ACTGTAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 16 0.55
31 13 0.45
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:34467353 original size:23 final size:24
Alignment explanation
Indices: 34467301--34467462 Score: 237
Period size: 23 Copynumber: 7.0 Consensus size: 24
34467291 GCTTTATCAT
* *
34467301 ATAACTGAGGCCT-AGCCTCTTTTA
1 ATAACTGGGGCATAAGCC-CTTTTA
*
34467325 ACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
34467348 ATAACTGGGGTA-AAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
34467370 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
34467393 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
34467417 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
34467441 ATAACTGGGGCAT-AGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
34467463 TGCACTTCCT
Statistics
Matches: 129, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
22 15 0.12
23 60 0.47
24 54 0.42
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:34467430 original size:47 final size:47
Alignment explanation
Indices: 34467301--34467462 Score: 240
Period size: 47 Copynumber: 3.5 Consensus size: 47
34467291 GCTTTATCAT
* * *
34467301 ATAACTGAGGCCTAGCCTCTTTTAACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
34467348 ATAACTGGGGTAAAGCCC-TTTAATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
34467393 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCAT-AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
34467441 ATAACTGGGGCATAGCCCTTTT
1 ATAACTGGGGCATAGCCCTTTT
34467463 TGCACTTCCT
Statistics
Matches: 104, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
45 30 0.29
46 12 0.12
47 45 0.43
48 17 0.16
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:34468882 original size:27 final size:27
Alignment explanation
Indices: 34468861--34469181 Score: 310
Period size: 27 Copynumber: 11.9 Consensus size: 27
34468851 AAGGGTATTT
*
34468861 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
34468888 CAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
34468915 CAGTAATTCTATAAATCGAAGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
34468942 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
34468969 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
34468996 -CGATAATTATGTAAATCG-GGGATAAAA
1 TAG-TAATTCTGTAAATCGAGGG-TAAAA
** * *
34469023 CGGTAATTATGTAAAT-TAGGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAA
** *
34469050 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
34469077 TAGTAATTCTATAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
*
34469104 -CGATAATTCTGTAAATCGAGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
** * **
34469131 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * *
34469158 CGGTAATTTTATAAATCGAGGGTA
1 TAGTAATTCTGTAAATCGAGGGTA
34469182 CTTTGGTAAT
Statistics
Matches: 258, Mismatches: 26, Indels: 20
0.85 0.09 0.07
Matches are distributed among these distances:
26 6 0.02
27 245 0.95
28 7 0.03
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:34469179 original size:81 final size:81
Alignment explanation
Indices: 34468863--34469181 Score: 412
Period size: 81 Copynumber: 3.9 Consensus size: 81
34468853 GGGTATTTTA
* * * *
34468863 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATA
* *
34468928 AATCGAAGGTAAAATG
66 AATCGAGGGTAAAACG
* * * *
34468944 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG-TAATTCTAT
34469008 AAATCG-GGGATAAAACG
65 AAATCGAGGG-TAAAACG
* * *
34469025 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTAT
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTAT
34469089 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAACG
* * * * *
34469106 ATAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATA
34469171 AATCGAGGGTA
66 AATCGAGGGTA
34469182 CTTTGGTAAT
Statistics
Matches: 207, Mismatches: 23, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
80 5 0.02
81 196 0.95
82 6 0.03
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATA
AATCGAGGGTAAAACG
Found at i:34469189 original size:27 final size:27
Alignment explanation
Indices: 34469132--34469409 Score: 242
Period size: 27 Copynumber: 10.3 Consensus size: 27
34469122 AGGGTAAAAC
* ****
34469132 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCTAGGGTATTTT
* * *
34469159 GGTAATTTTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCTAGGGTATTTT
* * *
34469186 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCTAGGGTATTTT
** ** * *
34469213 AATAATTTTACAGGTCAAGGGTATTTC
1 GGTAATTTTACAAATCTAGGGTATTTT
* *
34469240 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCTA-GGGTATTTT
* *
34469267 AGTAATTTTATAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCTA-GGGTATTTT
*
34469294 GATAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCTA-GGGTATTTT
34469321 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCTA-GGGTATTTT
* * *
34469348 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCTAGGGTATTTT
* *
34469375 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCTAGGGTATTTT
34469401 GGTAATTTT
1 GGTAATTTT
34469410 GTAAACCAAA
Statistics
Matches: 217, Mismatches: 31, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
26 19 0.09
27 196 0.90
28 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAATCTAGGGTATTTT
Found at i:34469190 original size:54 final size:54
Alignment explanation
Indices: 34468863--34469208 Score: 383
Period size: 54 Copynumber: 6.4 Consensus size: 54
34468853 GGGTATTTTA
* * * **
34468863 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* * *
34468917 GTAATTCTATAAATCGAAGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* * * * *
34468971 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCG-GGGATAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGG-TAAAATG
* * * * *
34469025 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTTTATAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* * *
34469079 GTAATTCTATAAA-CTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* * * ***
34469133 GTAATTTTACAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* *
34469187 GTAATTTTACAAGTCGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
34469209 TTTCAATAAT
Statistics
Matches: 248, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
53 4 0.02
54 239 0.96
55 5 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (54 bp):
GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
Found at i:34469423 original size:26 final size:26
Alignment explanation
Indices: 34469259--34469426 Score: 156
Period size: 27 Copynumber: 6.3 Consensus size: 26
34469249 ACAAATTAGG
* * * *
34469259 GGTATTTTAGTAATTTTATAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
34469286 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
34469313 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
34469340 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* * *
34469366 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
**
34469393 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
34469419 AGTATTTT
1 GGTATTTT
34469427 AAATAGGGAT
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 28 0.23
27 95 0.77
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:34471261 original size:20 final size:20
Alignment explanation
Indices: 34471220--34471261 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
34471210 AACACATGTA
*
34471220 TTCATAAAATTTTAGAAATT
1 TTCATAAAATTTTACAAATT
* *
34471240 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAAATT
34471260 TT
1 TT
34471262 TATTTTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (20 bp):
TTCATAAAATTTTACAAATT
Found at i:34476707 original size:48 final size:48
Alignment explanation
Indices: 34476593--34476731 Score: 190
Period size: 48 Copynumber: 2.9 Consensus size: 48
34476583 ACCACGTTAC
* * *
34476593 ATATTTAACCATGGTATATCCACTTAGCACCATGTTA-ATGAATCAAT
1 ATATGTAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
34476640 ATATGTAACCATGGCATATCCACCTAGCACCACGTTACATGTATCAAT
1 ATATGTAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * * *
34476688 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 ATATGTAACCATGGTATATCCACTTAGCACCACGTTACATGTAT
34476732 AACTGTGGTA
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 33 0.41
48 47 0.59
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (48 bp):
ATATGTAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:34479487 original size:27 final size:27
Alignment explanation
Indices: 34479468--34479623 Score: 186
Period size: 27 Copynumber: 5.8 Consensus size: 27
34479458 ATTACCAAAG
*
34479468 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
34479495 TACCCTTGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
34479522 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* ***
34479549 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
34479576 TACTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
34479603 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
34479624 ATAAAATACC
Statistics
Matches: 114, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:34479506 original size:54 final size:54
Alignment explanation
Indices: 34479443--34479652 Score: 159
Period size: 54 Copynumber: 3.9 Consensus size: 54
34479433 TACAGAAATG
**
34479443 CCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTA
* * **** *
34479497 CCCTTGACTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACCGTTTTA
1 CCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTA
* * * ****** * * **
34479551 CCCTCGATTTATAGAATTATTGTTTTACTCTTGATTTACAGAATTACTATTTTA
1 CCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTA
* ** * * * *
34479605 CCCTCGATTTACAAAATTAATAAAATACCCTTGGTTTACAAAATTACC
1 CCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACC
34479653 AAAATACCCT
Statistics
Matches: 128, Mismatches: 28, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 128 1.00
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.38
Consensus pattern (54 bp):
CCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTA
Found at i:34479567 original size:81 final size:81
Alignment explanation
Indices: 34479468--34479623 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
34479458 ATTACCAAAG
* *
34479468 TACCCTCGATTTACAGAATTACCGTTTTACCCTTGACTTACAGAATTACCGTTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTTGACTTACAGAATTACCATTTTACCCTCGATT
*
34479533 TACAGAATTACCGTTT
66 TACAAAATTACCGTTT
* ** * * *
34479549 TACCCTCGATTTATAGAATTATTGTTTTACTCTTGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTTGACTTACAGAATTACCATTTTACCCTCGATT
34479614 TACAAAATTA
66 TACAAAATTA
34479624 ATAAAATACC
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTTGACTTACAGAATTACCATTTTACCCTCGATT
TACAAAATTACCGTTT
Found at i:34479633 original size:27 final size:27
Alignment explanation
Indices: 34479603--34479689 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 27
34479593 ATTACTATTT
*
34479603 TACCCTCGATTTACAAAATTAATAAAA
1 TACCCTCGATTTACAAAATTAACAAAA
* * *
34479630 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTAACAAAA
* ** * *
34479657 TACCCTCTATCAATAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTAACAAAA
34479684 TACCCT
1 TACCCT
34479690 GGTTTGTAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.44, C:0.24, G:0.03, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTAACAAAA
Found at i:34479634 original size:81 final size:81
Alignment explanation
Indices: 34479455--34479652 Score: 216
Period size: 81 Copynumber: 2.4 Consensus size: 81
34479445 CTCGACTTGT
* * *
34479455 AAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCCTTGACTTACAGAATTACCGT
1 AAAATTAACAAAATACCCTCGATTTACAGAATTACCGTTTTACCCTTGACTTACAGAATTACCAT
*
34479520 TTTACCCTTGATTTAC
66 TTTACCCTCGATTTAC
* * **** * ** * * *
34479536 AGAATTACCGTTTTACCCTCGATTTATAGAATTATTGTTTTACTCTTGATTTACAGAATTACTAT
1 AAAATTAACAAAATACCCTCGATTTACAGAATTACCGTTTTACCCTTGACTTACAGAATTACCAT
34479601 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* * * *
34479617 AAAATTAATAAAATACCCTTGGTTTACAAAATTACC
1 AAAATTAACAAAATACCCTCGATTTACAGAATTACC
34479653 AAAATACCCT
Statistics
Matches: 91, Mismatches: 26, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
81 91 1.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (81 bp):
AAAATTAACAAAATACCCTCGATTTACAGAATTACCGTTTTACCCTTGACTTACAGAATTACCAT
TTTACCCTCGATTTAC
Found at i:34479724 original size:27 final size:27
Alignment explanation
Indices: 34479617--34479829 Score: 198
Period size: 27 Copynumber: 7.9 Consensus size: 27
34479607 CTCGATTTAC
** * * **
34479617 AAAATTAATAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTAGTTTGT
***
34479644 AAAATTACCAAAATACCCTCTA-TCAAT
1 AAAATTACCAAAATACCC-CTAGTTTGT
*
34479671 AAAATTACCAAAATA-CCCTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
34479697 AAAATTGCTAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
34479724 AAAATTACCAAAATGCCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
34479751 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * * *
34479778 GAAACTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-AGTTTGT
*
34479805 AAAATTACCAAAATAGCCCTGAGTT
1 AAAATTACCAAAATACCCCT-AGTT
34479830 ATAAAGTTAC
Statistics
Matches: 150, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
25 2 0.01
26 20 0.13
27 120 0.80
28 8 0.05
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:34479728 original size:80 final size:82
Alignment explanation
Indices: 34479625--34479824 Score: 228
Period size: 80 Copynumber: 2.5 Consensus size: 82
34479615 ACAAAATTAA
* * **
34479625 TAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCTA-TCAATAAAATTACCAAAATACC-
1 TAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCTAGTCAATAAAATTACCAAAATACCA
* *
34479688 CTGGTTTGTAAAATTGC
66 CTGGTTTGTAAAACTAC
* ***
34479705 TAAAATACCCCTAGTTTGTAAAATTACCAAAATGCCC-CTAGTTTGTAAAATTACCAAAATACCA
1 TAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCTAGTCAATAAAATTACCAAAATACCA
*
34479769 CTGGTTTGTGAAACTAC
66 CTGGTTTGTAAAACTAC
** *
34479786 CGAAATA-CCCTCAATTTGTAAAATTACCAAAATAGCCCT
1 TAAAATACCCCT-AGTTTGTAAAATTACCAAAATA-CCCT
34479825 GAGTTATAAA
Statistics
Matches: 100, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
79 3 0.03
80 55 0.55
81 39 0.39
82 3 0.03
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (82 bp):
TAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCTAGTCAATAAAATTACCAAAATACCA
CTGGTTTGTAAAACTAC
Found at i:34479834 original size:27 final size:27
Alignment explanation
Indices: 34479617--34479933 Score: 188
Period size: 27 Copynumber: 11.7 Consensus size: 27
34479607 CTCGATTTAC
** **
34479617 AAAATTAATAAAATACCCTTG-GTTTAC
1 AAAATTACCAAAATACCC-TGAGTTTGT
* ***
34479644 AAAATTACCAAAATACCCTCTA-TCAAT
1 AAAATTACCAAAATACCCT-GAGTTTGT
34479671 AAAATTACCAAAATACCCTG-GTTTGT
1 AAAATTACCAAAATACCCTGAGTTTGT
* *
34479697 AAAATTGCTAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATA-CCCTGAGTTTGT
*
34479724 AAAATTACCAAAATGCCCCT-AGTTTGT
1 AAAATTACCAAAAT-ACCCTGAGTTTGT
34479751 AAAATTACCAAAATACCACTG-GTTTGT
1 AAAATTACCAAAATACC-CTGAGTTTGT
* * * * *
34479778 GAAACTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTGAGTTTGT
*
34479805 AAAATTACCAAAATAGCCCTGAG-TTAT
1 AAAATTACCAAAATA-CCCTGAGTTTGT
* * *
34479832 AAAGTTA-CAGAAACACCCTTGAGTTTCT
1 AAAATTACCA-AAATACCC-TGAGTTTGT
* * **
34479860 AAAAATTA-TAGAAATACCATTG-GTTTAC
1 -AAAATTACCA-AAATACC-CTGAGTTTGT
**
34479888 AAAATTACTGAAATACCCTTG-GTTTGT
1 AAAATTACCAAAATACCC-TGAGTTTGT
* * *
34479915 AGATTTACCAAAACACCCT
1 AAAATTACCAAAATACCCT
34479934 TGTAGGATGA
Statistics
Matches: 228, Mismatches: 45, Indels: 35
0.74 0.15 0.11
Matches are distributed among these distances:
26 26 0.11
27 173 0.76
28 13 0.06
29 16 0.07
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTGAGTTTGT
Found at i:34480057 original size:27 final size:27
Alignment explanation
Indices: 34479966--34480057 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
34479956 ACCCTTATTA
* *
34479966 GGTAAAAAGACTGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
34479993 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
34480020 GGTAAAGTGACCGTAATA-CCCATGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
34480047 GGTAAAATGAC
1 GGTAAAATGAC
34480058 GAATATGCCC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:34480906 original size:25 final size:25
Alignment explanation
Indices: 34480866--34481010 Score: 218
Period size: 25 Copynumber: 5.8 Consensus size: 25
34480856 AGGAAGTGCT
* *
34480866 AAAAAGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
34480891 AAAAGGGCTTTACCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
34480916 AAAAGGGCTTCGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
34480941 AAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
34480966 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
34480991 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
34481011 ATTAAAAGAG
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 108 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:34481034 original size:50 final size:50
Alignment explanation
Indices: 34480866--34481035 Score: 220
Period size: 50 Copynumber: 3.4 Consensus size: 50
34480856 AGGAAGTGCT
* * * *
34480866 AAAAAGGCTATGCCCCAGTTTACCGAAAAGGGCTTTACCCCAGTTTACCG
1 AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACTG
34480916 AAAAGGGCT-TCGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTAT-GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACTG
* * *
34480966 AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTA-TT
1 AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACTG
*
34481014 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
34481036 ATATGATAAA
Statistics
Matches: 108, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
48 6 0.06
49 11 0.10
50 90 0.83
51 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACTG
Found at i:34481034 original size:75 final size:74
Alignment explanation
Indices: 34480864--34481035 Score: 229
Period size: 75 Copynumber: 2.3 Consensus size: 74
34480854 GGAGGAAGTG
*
34480864 CTAAAAAGGCTATGCCCCAGTTTACCGAAAAGGGCTTTACCCCAGTTTACCGAAAAGGGCTTCGC
1 CTAAAAAGGCTATGCCCCAGTTTACCGAAAAGGGCTTTACCCCAGTTTACCAAAAAGGGCTTCGC
34480929 CCCAGTTTA
66 CCCAGTTTA
* * * * * *
34480938 CCAAAAAGGGCTTTGCCCCAGTTTACTGAAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTG
1 CTAAAAA-GGCTATGCCCCAGTTTACCGAAAAGGGCTTTACCCCAGTTTACCAAAAAGGGCTTCG
34481003 CCCCAG-TTA
65 CCCCAGTTTA
* *
34481012 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAA-AGGCTATGCC-CCAGTT
34481036 ATATGATAAA
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
74 20 0.24
75 64 0.76
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (74 bp):
CTAAAAAGGCTATGCCCCAGTTTACCGAAAAGGGCTTTACCCCAGTTTACCAAAAAGGGCTTCGC
CCCAGTTTA
Found at i:34481216 original size:42 final size:42
Alignment explanation
Indices: 34481157--34481244 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
34481147 TAGTCTCCCC
* *
34481157 AAATGGGCTTGTATACATTCATTGGTATTTCATGTAATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTAATATTG
**
34481199 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTAATATTG
34481241 AAAT
1 AAAT
34481245 AGGCCTATGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTAATATTG
Done.