Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 128 of 378
Found at i:36016483 original size:40 final size:40
Alignment explanation
Indices: 36016383--36016560 Score: 144
Period size: 40 Copynumber: 4.5 Consensus size: 40
36016373 AAATTATAAT
* * * * **
36016383 CGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGCTATATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATC
* *
36016423 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATC
* * *
36016463 CGGGCTAAGACCCGAAGGCATTTGTGC-AATC-GTGATATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT-ATATC
* * * * * * * *
36016502 CGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTACCATATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATC
* *
36016542 CGGGCTATGTCCCGAAGGC
1 CGGGCTAAGACCCGAAGGC
36016561 GTTTGAACGA
Statistics
Matches: 110, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.26
40 80 0.73
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATC
Found at i:36024454 original size:40 final size:40
Alignment explanation
Indices: 36024348--36024531 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
36024338 TGCTGGAAAT
* * * * * **
36024348 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
36024388 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
36024428 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
36024466 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
36024507 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
36024532 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:36029420 original size:40 final size:40
Alignment explanation
Indices: 36029308--36029460 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
36029298 GGATATAGCG
* * * * ***
36029308 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
36029348 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
36029388 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
36029428 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
36029461 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:36037315 original size:39 final size:39
Alignment explanation
Indices: 36037261--36037410 Score: 205
Period size: 39 Copynumber: 3.8 Consensus size: 39
36037251 GTTATAATAG
36037261 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGAA
1 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGAA
36037300 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGAA
1 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGAA
** * *
36037339 CTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTGG-AA
* *
36037379 CTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 C-TCGCACAAATGCCTTCGGGACTTAACCCGGA
36037411 CATCATTCGA
Statistics
Matches: 101, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
38 3 0.03
39 69 0.68
40 18 0.18
41 11 0.11
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGAA
Found at i:36037330 original size:79 final size:78
Alignment explanation
Indices: 36037194--36037410 Score: 210
Period size: 79 Copynumber: 2.8 Consensus size: 78
36037184 GAATCACGTA
* * * ** * *
36037194 CCTTCGGAT-TTTATCCGGATATAGCGACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTAT-
1 CCTTCGGATCTTAACCCGGATATGGTAACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATT-TG
36037256 AATAGCTCGCACAAATG
64 AA-A-CTCGCACAAATG
* *
36037273 CCTTCGGGA-CTTAACCCGGATTTGG-AACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
1 CCTTC-GGATCTTAACCCGGATATGGTAACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATTTG
*
36037336 GAACTCGCACAAATG
64 AAACTCGCACAAATG
** * *
36037351 CCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATGGTAAC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
36037411 CATCATTCGA
Statistics
Matches: 115, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
77 3 0.03
78 33 0.29
79 54 0.47
80 25 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (78 bp):
CCTTCGGATCTTAACCCGGATATGGTAACTCGCACAAAGCCTTCGGGACTTAGCCCGGATTTGAA
ACTCGCACAAATG
Found at i:36041960 original size:43 final size:43
Alignment explanation
Indices: 36041894--36042023 Score: 156
Period size: 43 Copynumber: 3.0 Consensus size: 43
36041884 AGCTCGTACA
* *
36041894 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACATGAAATCACATATCG
* * * *
36041937 ATGCCACTGTCCCAGACAG-GGTCTTTCACGCAAATCACAAATCA
1 ATGCCACTGTCCCAGAC-GTGGTCTTACATG-AAATCACATATCG
*
36041981 ATGCCAAC-ATCCCAGACGTGGTCTTACATGAAATCACATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACATGAAATCACATATCG
36042024 GAATCCTATG
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
43 37 0.51
44 33 0.46
45 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACATGAAATCACATATCG
Found at i:36045194 original size:42 final size:43
Alignment explanation
Indices: 36045090--36045227 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 43
36045080 TGAGACATCG
* * *
36045090 TGTAAGACCGTGTCTGGGACACAAGCCTCGATTTAGATTTACA
1 TGTAAGACCATGTCTGGGACACAAGCATCGATCTAGATTTACA
* * *
36045133 TATAAGAACATGTCTGGGACATC-AGCATCGTATCT-GATTT-CC
1 TGTAAGACCATGTCTGGGACA-CAAGCATCG-ATCTAGATTTACA
* * * * * * * *
36045175 TGTAAGACCCTGTCTGGGACAGAGGTATTGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACACAAGCATCGATCTAGATTTACA
36045218 TGTAAGACCA
1 TGTAAGACCA
36045228 CATCCGGGAC
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
41 3 0.04
42 27 0.37
43 39 0.53
44 4 0.05
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACACAAGCATCGATCTAGATTTACA
Found at i:36054530 original size:17 final size:18
Alignment explanation
Indices: 36054508--36054541 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
36054498 TCAAAATTCA
36054508 CCAGAA-ATCCCAAAAAC
1 CCAGAAGATCCCAAAAAC
36054525 CCAGAAGATCCCAAAAA
1 CCAGAAGATCCCAAAAA
36054542 TCAGGGCGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.53, C:0.32, G:0.09, T:0.06
Consensus pattern (18 bp):
CCAGAAGATCCCAAAAAC
Found at i:36064373 original size:43 final size:42
Alignment explanation
Indices: 36064310--36064458 Score: 167
Period size: 43 Copynumber: 3.5 Consensus size: 42
36064300 TCAGACATCG
* *
36064310 TGTAAGACCGTGTCTGGGACACAGGCTTCGATTTAGATTTACA
1 TGTAAGACCATGTCTGGGACACAGGCATCGATTT-GATTTACA
* * *
36064353 TATAAGACCATGTCTGGGACATC-GGCATCGTATCTGATTT-CG
1 TGTAAGACCATGTCTGGGACA-CAGGCATCG-ATTTGATTTACA
* * *
36064395 TGTAAGACCCTGTCTGGGACAAAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACACAGGCATCGAT-TTGATTTACA
*
36064438 TGTAAGACCATATCTGGGACA
1 TGTAAGACCATGTCTGGGACA
36064459 TTGGCATTAT
Statistics
Matches: 88, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 32 0.36
43 50 0.57
44 4 0.05
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACACAGGCATCGATTTGATTTACA
Found at i:36064454 original size:85 final size:85
Alignment explanation
Indices: 36064307--36064465 Score: 239
Period size: 85 Copynumber: 1.9 Consensus size: 85
36064297 GTCTCAGACA
* * * * *
36064307 TCGTGTAAGACCGTGTCTGGGACACAGGCTTCGATTTAGATTTACATATAAGACCATGTCTGGGA
1 TCGTGTAAGACCCTGTCTGGGACAAAGGCATCGATTTAGAATTACATATAAGACCATATCTGGGA
36064372 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
*
36064392 TCGTGTAAGACCCTGTCTGGGACAAAGGCATCGATATT-GAATTACATGTAAGACCATATCTGGG
1 TCGTGTAAGACCCTGTCTGGGACAAAGGCATCGAT-TTAGAATTACATATAAGACCATATCTGGG
*
36064456 ACATTGGCAT
65 ACATCGGCAT
36064466 TATACTTGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
85 64 0.97
86 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACAAAGGCATCGATTTAGAATTACATATAAGACCATATCTGGGA
CATCGGCATCGTATCTGATT
Found at i:36065834 original size:24 final size:24
Alignment explanation
Indices: 36065801--36065898 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
36065791 AAGGCTGTCA
* *
36065801 GGAGAAGATTTAGGAGCTAACAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
36065825 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
36065849 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
36065873 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
36065898 G
1 G
36065899 AGCAGGAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 64 0.96
25 3 0.04
ACGTcount: A:0.37, C:0.06, G:0.38, T:0.19
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:36067596 original size:33 final size:33
Alignment explanation
Indices: 36067519--36067611 Score: 86
Period size: 33 Copynumber: 2.8 Consensus size: 33
36067509 TATAGGCCAT
* *
36067519 ACTGTTATCTGAATAAGGGGTTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGCTT-AGGCCCAGTTC
* *
36067553 AATGTAATCTGAA-AAGGGCTCT-GGCCCAGTATC
1 ACTGTTATCTGAATAAGGGCT-TAGGCCCAGT-TC
*
36067586 ACTGTTATCTGAAT--GAGCTTAGGCCC
1 ACTGTTATCTGAATAAGGGCTTAGGCCC
36067612 GATGGGCTTG
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
31 1 0.02
32 17 0.35
33 18 0.38
34 12 0.25
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (33 bp):
ACTGTTATCTGAATAAGGGCTTAGGCCCAGTTC
Found at i:36073742 original size:24 final size:24
Alignment explanation
Indices: 36073709--36073806 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
36073699 AAGGCTGTCA
*
36073709 GGAGAAGATTTAGGAGCTAATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
36073733 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
36073757 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
*
36073781 GGAGAAGATTTTGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
36073806 G
1 G
36073807 AGCAGGAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 64 0.96
25 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.38, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:36075709 original size:29 final size:29
Alignment explanation
Indices: 36075676--36075749 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
36075666 GTGACGAGAT
36075676 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
36075705 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
36075734 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36075750 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:36075765 original size:29 final size:29
Alignment explanation
Indices: 36075733--36075808 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
36075723 CTGGAAATAT
* *
36075733 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
36075762 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
36075791 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
36075809 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:36075776 original size:58 final size:58
Alignment explanation
Indices: 36075676--36075808 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
36075666 GTGACGAGAT
* * * * * *
36075676 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
36075734 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
36075792 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
36075809 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:36083589 original size:29 final size:29
Alignment explanation
Indices: 36083556--36083629 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
36083546 GTGACGAGAT
36083556 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
36083585 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
36083614 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36083630 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:36083645 original size:29 final size:29
Alignment explanation
Indices: 36083613--36083687 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
36083603 CTGGAAATAT
* *
36083613 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
36083642 ATGGCACT-TGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
36083670 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
36083688 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 22 0.59
29 15 0.41
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.23
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:36091459 original size:29 final size:29
Alignment explanation
Indices: 36091426--36091499 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
36091416 GTGACGAGAT
36091426 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
36091455 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
36091484 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36091500 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:36091515 original size:29 final size:29
Alignment explanation
Indices: 36091483--36091558 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
36091473 CTGGAAATAT
* *
36091483 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
36091512 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
36091541 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
36091559 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:36091526 original size:58 final size:58
Alignment explanation
Indices: 36091426--36091558 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
36091416 GTGACGAGAT
* * * * * *
36091426 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
36091484 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
36091542 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
36091559 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:36094279 original size:12 final size:12
Alignment explanation
Indices: 36094265--36094321 Score: 51
Period size: 12 Copynumber: 4.5 Consensus size: 12
36094255 TTATTTTTAT
*
36094265 TATTATACATTT
1 TATTATACATTA
*
36094277 TATTTATAAATTA
1 TA-TTATACATTA
*
36094290 TATCATACATTA
1 TATTATACATTA
*
36094302 TATTTTACTATATA
1 TATTATAC-AT-TA
36094316 TATTAT
1 TATTAT
36094322 TGCTTACATT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
12 16 0.46
13 12 0.34
14 7 0.20
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (12 bp):
TATTATACATTA
Found at i:36094499 original size:23 final size:21
Alignment explanation
Indices: 36094458--36094510 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
36094448 TATATGATAG
*
36094458 TATTTATATTTCATTATATTT
1 TATTTATATTTCATTATATTA
36094479 TATTTATATATT-ATTACATATTA
1 TATTTATAT-TTCATT--ATATTA
36094502 TATTT-TATT
1 TATTTATATT
36094511 ATATATTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 13 0.46
22 5 0.18
23 10 0.36
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (21 bp):
TATTTATATTTCATTATATTA
Found at i:36094504 original size:17 final size:17
Alignment explanation
Indices: 36094482--36094519 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
36094472 TATATTTTAT
36094482 TTATATATTATTACATA
1 TTATATATTATTACATA
* *
36094499 TTATATTTTATTATATA
1 TTATATATTATTACATA
36094516 TTAT
1 TTAT
36094520 TCCTTATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATATATTATTACATA
Found at i:36094510 original size:10 final size:10
Alignment explanation
Indices: 36094461--36094520 Score: 54
Period size: 10 Copynumber: 6.2 Consensus size: 10
36094451 ATGATAGTAT
*
36094461 TTATATTTCA
1 TTATATTTTA
36094471 TTATATTTTA
1 TTATATTTTA
*
36094481 TTTATATATTA
1 -TTATATTTTA
*
36094492 TTACA---TA
1 TTATATTTTA
36094499 TTATATTTTA
1 TTATATTTTA
*
36094509 TTATATATTA
1 TTATATTTTA
36094519 TT
1 TT
36094521 CCTTATAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
7 6 0.15
10 26 0.63
11 9 0.22
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (10 bp):
TTATATTTTA
Found at i:36094531 original size:27 final size:28
Alignment explanation
Indices: 36094473--36094531 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
36094463 ATATTTCATT
*
36094473 ATATTTTATTTATATATTATTACATATT
1 ATATTTTATTTATATATTATTACATATA
* *
36094501 ATATTTTA-TTATATATTATTCCTTATA
1 ATATTTTATTTATATATTATTACATATA
36094528 ATAT
1 ATAT
36094532 CTTCCTCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 20 0.71
28 8 0.29
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (28 bp):
ATATTTTATTTATATATTATTACATATA
Found at i:36106937 original size:66 final size:68
Alignment explanation
Indices: 36106861--36107047 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
36106851 TAGTACCACT
*
36106861 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
36106923 CACG
65 CACG
36106927 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
36106992 ATCACG
63 ATCACG
36106998 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
36107048 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:36106972 original size:71 final size:71
Alignment explanation
Indices: 36106884--36107047 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
36106874 CGATTTGTCT
36106884 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36106949 CTTTCA
66 CTTTCA
36106955 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36107020 CTTTCA
66 CTTTCA
36107026 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36107048 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36116213 original size:66 final size:68
Alignment explanation
Indices: 36116137--36116323 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
36116127 TAGTACCACT
*
36116137 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
36116199 CACG
65 CACG
36116203 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
36116268 ATCACG
63 ATCACG
36116274 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
36116324 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:36116248 original size:71 final size:71
Alignment explanation
Indices: 36116160--36116323 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
36116150 CGATTTGTCT
36116160 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36116225 CTTTCA
66 CTTTCA
36116231 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36116296 CTTTCA
66 CTTTCA
36116302 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36116324 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36116361 original size:71 final size:70
Alignment explanation
Indices: 36116160--36116357 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
36116150 CGATTTGTCT
* * *
36116160 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
36116225 CTTTCA
65 CTTTCA
* * *
36116231 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
36116296 CTTTCA
65 CTTTCA
* *
36116302 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
36116358 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:36118959 original size:44 final size:44
Alignment explanation
Indices: 36118910--36119272 Score: 237
Period size: 44 Copynumber: 8.2 Consensus size: 44
36118900 GCGTTTACAA
* *
36118910 GGAGCAGATCGAAGATAGTAGATTTGACGTCTCTATATTGTCAG
1 GGAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAG
*
36118954 GGAGCAGATCGAAGATAGCT-GTTTTGGCGTCTCTGTATTGTCAG
1 GGAGCAGATCGAAGATAG-TAGATTTGGCGTCTCTGTATTGTCAG
* * * * * * ** *
36118998 AGAACAAATCGAAGA-AATATATTTGGCATCTCCATATTCGAC-G
1 GGAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATT-GTCAG
* * ** * * *
36119041 GAGAGCAGATCGAAGACATAGCAGATCTAACCT-TCGGATGCTTTTG-CATT
1 G-GAGCAGATCGAAG--ATAGTAGATTTGGCGTCTC---TG-TATTGTCA-G
* * * * *
36119091 GAAGCAGATCCAAG--A-T-GATTTGGCATC-CTTGTGTT-TACAA
1 GGAGCAGATCGAAGATAGTAGATTTGGCGTCTC-TGTATTGT-CAG
* * * *
36119131 GGAGCAAATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAA
1 GGAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAG
* * *
36119175 GGAGCAGATTGAAGATAGCT-GATTTGGCATCTCTGTATTGTTAG
1 GGAGCAGATCGAAGATAG-TAGATTTGGCGTCTCTGTATTGTCAG
*
36119219 GGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAG
1 GGAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAG
36119263 GGAGCAGATC
1 GGAGCAGATC
36119273 AGAGATAACT
Statistics
Matches: 241, Mismatches: 54, Indels: 48
0.70 0.16 0.14
Matches are distributed among these distances:
40 14 0.06
41 4 0.02
42 2 0.01
43 23 0.10
44 167 0.69
45 4 0.02
46 3 0.01
47 7 0.03
48 1 0.00
49 12 0.05
50 4 0.02
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (44 bp):
GGAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAG
Found at i:36119272 original size:221 final size:222
Alignment explanation
Indices: 36118748--36119251 Score: 722
Period size: 221 Copynumber: 2.3 Consensus size: 222
36118738 AGATCAAAGA
* *
36118748 TGATTTGGCATCTCTATATTGTCAGAGAATAAATCGAAGAAACAGATTTGGCATCTCCATATTCG
1 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCG
* * **
36118813 ACGGAGAGCAGATTGAAGGCATAACAGATCTAACCTTCAGATTTTTTTTTTTGCATCGAAGCAGA
66 ACGGAGAGCAGATCGAAGACATAACAGATCTAACCTTCAGA---TTGCTTTTGCATCGAAGCAGA
* * *
36118878 TCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCGAAGATAGTAGATTTGACGTCTC
128 TCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAAATCAAAGATAGCAGATTTGACGTCTC
*
36118943 TATATTGTCAGGGAGCAGATCGAAGATAGC
193 TATATTGTCAAGGAGCAGATCGAAGATAGC
* * * *
36118973 TGTTTTGGCGTCTCTGTATTGTCAGAGAACAAATCGAAGAAATATATTTGGCATCTCCATATTCG
1 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCG
* * *
36119038 ACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGA-TGCTTTTGCATTGAAGCAGATCC
66 ACGGAGAGCAGATCGAAGACATAACAGATCTAACCTTCAGATTGCTTTTGCATCGAAGCAGATCC
* * *
36119102 AAGATGATTTGGCATCCTTGTGTTTACAAGGAGCAAATCAAAGATAGCAGATTTGGCGTCTCTGT
131 AAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAAATCAAAGATAGCAGATTTGACGTCTCTAT
*
36119167 ATTGTCAAGGAGCAGATTGAAGATAGC
196 ATTGTCAAGGAGCAGATCGAAGATAGC
* * * * * *
36119194 TGATTTGGCATCTCTGTATTGTTAGGGAGCAGATCGAAGATAGCAGATTTGGCGTCTC
1 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGA-AACAGATTTGGCATCTC
36119252 TGTATTGTCA
Statistics
Matches: 247, Mismatches: 31, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
221 138 0.56
222 13 0.05
225 96 0.39
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (222 bp):
TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCG
ACGGAGAGCAGATCGAAGACATAACAGATCTAACCTTCAGATTGCTTTTGCATCGAAGCAGATCC
AAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAAATCAAAGATAGCAGATTTGACGTCTCTAT
ATTGTCAAGGAGCAGATCGAAGATAGC
Found at i:36119279 original size:44 final size:45
Alignment explanation
Indices: 36119131--36119292 Score: 224
Period size: 44 Copynumber: 3.7 Consensus size: 45
36119121 GTGTTTACAA
* *
36119131 GGAGCAAATCA-AAGATAGCAGATTTGGCGTCTCTGTATTGTCAA
1 GGAGCAGATCAGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAG
* * * *
36119175 GGAGCAGAT-TGAAGATAGCTGATTTGGCATCTCTGTATTGTTAG
1 GGAGCAGATCAGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAG
36119219 GGAGCAGATC-GAAGATAGCAGATTTGGCGTCTCTGTATTGTCAG
1 GGAGCAGATCAGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAG
* *
36119263 GGAGCAGATCAG-AGATAACTGATTTGGCGT
1 GGAGCAGATCAGAAGATAGCAGATTTGGCGT
36119293 TCTTGAATTT
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
44 103 0.99
45 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (45 bp):
GGAGCAGATCAGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAG
Found at i:36119313 original size:88 final size:88
Alignment explanation
Indices: 36119133--36119325 Score: 230
Period size: 88 Copynumber: 2.2 Consensus size: 88
36119123 GTTTACAAGG
* * * *
36119133 AGCAAATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAAGGAGCAGATTGAAGATAGCTGAT
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAAGGAGCAGATAGAAGATAACTGAT
* * **
36119198 TTGGCATCTCTGTATTGTTAGGG
66 TTGGCATCTCTGAATTGTGAGAA
*
36119221 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAG-AGATAACTGA
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAAGGAGCAGAT-AGAAGATAACTGA
*
36119285 TTTGGCGT-TCTTGAATTTGTGA-AA
65 TTTGGCATCTC-TGAA-TTGTGAGAA
* *
36119309 AGCAGGTTGAAGATAGC
1 AGCAGATCGAAGATAGC
36119326 TAGTTTGCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
87 2 0.02
88 82 0.91
89 6 0.07
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.29
Consensus pattern (88 bp):
AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAAGGAGCAGATAGAAGATAACTGAT
TTGGCATCTCTGAATTGTGAGAA
Found at i:36119474 original size:14 final size:14
Alignment explanation
Indices: 36119455--36119490 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
36119445 ACAGTCCCGT
36119455 AAATAAATAAAAAC
1 AAATAAATAAAAAC
36119469 AAATAAA-AAAAAC
1 AAATAAATAAAAAC
*
36119482 AAAAAAATA
1 AAATAAATA
36119491 TAACAGTCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.11
Consensus pattern (14 bp):
AAATAAATAAAAAC
Found at i:36120916 original size:12 final size:12
Alignment explanation
Indices: 36120902--36120957 Score: 51
Period size: 12 Copynumber: 4.5 Consensus size: 12
36120892 TTATTTTTAT
*
36120902 TATTATACATTT
1 TATTATACATTA
36120914 TATTTATA-ATTA
1 TA-TTATACATTA
*
36120926 TATCATACATTA
1 TATTATACATTA
*
36120938 TATTTTACTATATA
1 TATTATAC-AT-TA
36120952 TATTAT
1 TATTAT
36120958 TCCTTACATT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
11 4 0.11
12 17 0.49
13 7 0.20
14 7 0.20
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (12 bp):
TATTATACATTA
Found at i:36120951 original size:24 final size:24
Alignment explanation
Indices: 36120873--36120957 Score: 75
Period size: 24 Copynumber: 3.5 Consensus size: 24
36120863 TATTTTTATT
* *
36120873 ATATATATTATCCATTATATTATTT
1 ATATATATTATACATTATATT-TTA
* *
36120898 TTAT-TATTATACATTTTATTTATA
1 ATATATATTATACATTATATTT-TA
*
36120922 AT-TATATCATACATTATATTTTA
1 ATATATATTATACATTATATTTTA
36120945 CTATATATATTAT
1 --ATATATATTAT
36120958 TCCTTACATT
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
23 4 0.09
24 31 0.66
25 5 0.11
26 7 0.15
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.56
Consensus pattern (24 bp):
ATATATATTATACATTATATTTTA
Found at i:36121141 original size:17 final size:17
Alignment explanation
Indices: 36121119--36121156 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
36121109 TATATTTTTT
36121119 TTATATATTATTACATA
1 TTATATATTATTACATA
* *
36121136 TTATATTTTATTATATA
1 TTATATATTATTACATA
36121153 TTAT
1 TTAT
36121157 TCCTTATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATATATTATTACATA
Found at i:36121168 original size:27 final size:27
Alignment explanation
Indices: 36121114--36121168 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
36121104 TTCATTATAT
* *
36121114 TTTTTTTATATATTATTACATATTATA
1 TTTTATTATATATTATTACATATAATA
* *
36121141 TTTTATTATATATTATTCCTTATAATA
1 TTTTATTATATATTATTACATATAATA
36121168 T
1 T
36121169 CTTCCTCTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (27 bp):
TTTTATTATATATTATTACATATAATA
Found at i:36125581 original size:28 final size:30
Alignment explanation
Indices: 36125520--36125581 Score: 76
Period size: 28 Copynumber: 2.1 Consensus size: 30
36125510 AATAAACATT
* *
36125520 GTTGAATTTGAATTTGTATGATTTTTATAT
1 GTTGAATTTGAATTTGTATGATTTCTATAG
36125550 GTTGAATTT-AA-TTGTATGGATTTCTAT-G
1 GTTGAATTTGAATTTGTAT-GATTTCTATAG
36125578 GTTG
1 GTTG
36125582 GAGCCGAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 10 0.34
29 10 0.34
30 9 0.31
ACGTcount: A:0.24, C:0.02, G:0.21, T:0.53
Consensus pattern (30 bp):
GTTGAATTTGAATTTGTATGATTTCTATAG
Found at i:36125721 original size:42 final size:43
Alignment explanation
Indices: 36125674--36125785 Score: 176
Period size: 41 Copynumber: 2.7 Consensus size: 43
36125664 TAACAGTGAT
36125674 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTA-TG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATTG
36125716 ATATCAGGCTTATTGCCTAGCAGGCTTT-ATGCCGGTGTATTG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATTG
* * *
36125758 A-ATCAAGTTTATTACCTAGCAGGCTTTG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTG
36125786 TACGGTGTTT
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
41 34 0.52
42 31 0.48
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (43 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATTG
Found at i:36127781 original size:47 final size:46
Alignment explanation
Indices: 36127727--36127838 Score: 170
Period size: 47 Copynumber: 2.4 Consensus size: 46
36127717 GCACTAAGGT
36127727 AAGGATACCATGTAAGATCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGA-CATGTTTGGAACATGGCATTTGGTAAGAC
* *
36127774 AAGGATACCATGTAAGACTATGTTTGGAACATGGCATTTGGTAATAT
1 AAGGATACCATGTAAGAC-ATGTTTGGAACATGGCATTTGGTAAGAC
* *
36127821 GAGGATATCATGTAAGAC
1 AAGGATACCATGTAAGAC
36127839 CATGCCAAGG
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.02
47 59 0.98
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.29
Consensus pattern (46 bp):
AAGGATACCATGTAAGACATGTTTGGAACATGGCATTTGGTAAGAC
Found at i:36127948 original size:55 final size:54
Alignment explanation
Indices: 36127822--36128015 Score: 234
Period size: 53 Copynumber: 3.6 Consensus size: 54
36127812 TGGTAATATG
* * *
36127822 AGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTAT-AGGCA
1 AGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
* * *
36127875 AGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAA
1 AGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-A
* * * *
36127931 AGG-TCCCATGTAAGACCATACCAAGGCATGGCATTGGTGAGTTC-ATAAGGCA
1 AGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
* *
36127983 AGGATACCACGTAAGACCAT-TCAAGACATGGCA
1 AGGATACCATGTAAGACCATGCCAAGACATGGCA
36128016 ATGGTAAGTT
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
52 15 0.12
53 61 0.50
54 5 0.04
55 37 0.30
56 4 0.03
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.22
Consensus pattern (54 bp):
AGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
Found at i:36129774 original size:24 final size:24
Alignment explanation
Indices: 36129747--36129844 Score: 160
Period size: 24 Copynumber: 4.0 Consensus size: 24
36129737 AAGGCTGTCA
36129747 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
36129771 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
36129795 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
36129819 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
36129844 G
1 G
36129845 AGCAGGAGTT
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
24 66 0.96
25 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.39, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:36129989 original size:21 final size:21
Alignment explanation
Indices: 36129956--36130003 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
36129946 ACCATTCTCC
36129956 TCTTCTTT--CTTTTCTCCTTT
1 TCTTCTTTAACTTTT-TCCTTT
*
36129976 TC-TCTTTAACTTTTTCTTTT
1 TCTTCTTTAACTTTTTCCTTT
36129996 TCTTCTTT
1 TCTTCTTT
36130004 TCCTCCATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 5 0.21
20 9 0.38
21 10 0.42
ACGTcount: A:0.04, C:0.25, G:0.00, T:0.71
Consensus pattern (21 bp):
TCTTCTTTAACTTTTTCCTTT
Found at i:36131538 original size:33 final size:34
Alignment explanation
Indices: 36131461--36131541 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 34
36131451 TATGGGCCGT
*
36131461 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
36131495 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
36131528 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
36131542 GGGCTTAGGC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 13 0.34
33 14 0.37
34 11 0.29
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:36131546 original size:32 final size:31
Alignment explanation
Indices: 36131461--36131551 Score: 74
Period size: 32 Copynumber: 2.8 Consensus size: 31
36131451 TATGGGCCGT
*
36131461 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAAT---GGGCTAAGGCCCAGTTC
* * * **
36131495 AATGTAATCTGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCTAAGGCCCAGT-TC
*
36131528 ACTGTTATCTGAATGGGCTTAGGC
1 ACTGTTATCTGAATGGGCTAAGGC
36131552 TCGATGGGCT
Statistics
Matches: 44, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
32 23 0.52
33 10 0.23
34 9 0.20
35 2 0.05
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (31 bp):
ACTGTTATCTGAATGGGCTAAGGCCCAGTTC
Found at i:36137712 original size:24 final size:25
Alignment explanation
Indices: 36137679--36137776 Score: 121
Period size: 24 Copynumber: 4.0 Consensus size: 25
36137669 AAGGCTATCA
36137679 GGAGAAGATTTAGGAGCTGAT-AAG
1 GGAGAAGATTTAGGAGCTGATAAAG
* *
36137703 GGAGAGGATTTAGGAGTTGAT-AAG
1 GGAGAAGATTTAGGAGCTGATAAAG
* *
36137727 GGAGAGGATTTAGGAGCTAATAAAG
1 GGAGAAGATTTAGGAGCTGATAAAG
* *
36137752 GG-GAAGATTTAGGAGTTGATCAAG
1 GGAGAAGATTTAGGAGCTGATAAAG
36137776 G
1 G
36137777 AGCAGGAGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
24 60 0.92
25 5 0.08
ACGTcount: A:0.36, C:0.03, G:0.39, T:0.22
Consensus pattern (25 bp):
GGAGAAGATTTAGGAGCTGATAAAG
Found at i:36137761 original size:48 final size:49
Alignment explanation
Indices: 36137679--36137776 Score: 146
Period size: 48 Copynumber: 2.0 Consensus size: 49
36137669 AAGGCTATCA
* *
36137679 GGAGAAGATTTAGGAGCTGATAAGGGAGAGGATTTAGGAGTTGAT-AAG
1 GGAGAAGATTTAGGAGCTAATAAGGGAGAAGATTTAGGAGTTGATCAAG
*
36137727 GGAGAGGATTTAGGAGCTAATAAAGGG-GAAGATTTAGGAGTTGATCAAG
1 GGAGAAGATTTAGGAGCTAAT-AAGGGAGAAGATTTAGGAGTTGATCAAG
36137776 G
1 G
36137777 AGCAGGAGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
48 36 0.80
49 9 0.20
ACGTcount: A:0.36, C:0.03, G:0.39, T:0.22
Consensus pattern (49 bp):
GGAGAAGATTTAGGAGCTAATAAGGGAGAAGATTTAGGAGTTGATCAAG
Found at i:36140266 original size:24 final size:25
Alignment explanation
Indices: 36140233--36140282 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 25
36140223 TGAATGGATG
36140233 TAAACAAATTAATTTTAAAAGAAAA
1 TAAACAAATTAATTTTAAAAGAAAA
*
36140258 TAAA-AAATTAATTTTAAAAGCAAA
1 TAAACAAATTAATTTTAAAAGAAAA
36140282 T
1 T
36140283 TTTATGCCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (25 bp):
TAAACAAATTAATTTTAAAAGAAAA
Found at i:36142166 original size:55 final size:55
Alignment explanation
Indices: 36142095--36142221 Score: 164
Period size: 55 Copynumber: 2.3 Consensus size: 55
36142085 AGCCCGTGTG
* ** * * * *
36142095 CAACACTGACTTTAAAACATGGCCATGTGACACGCCTGTGTGGCCTTCTCGTCTA
1 CAACACTGACTTTAAAACATGACCATGACACACGCCCGTGTGGCCTGCCCATCTA
* *
36142150 CAACACTGACTTTAAAACATGACCATGACACACTCCCGTGTGGCCTGCCCATGTA
1 CAACACTGACTTTAAAACATGACCATGACACACGCCCGTGTGGCCTGCCCATCTA
*
36142205 CAGCACTGACTTTAAAA
1 CAACACTGACTTTAAAA
36142222 TTTTAAGTGC
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 62 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (55 bp):
CAACACTGACTTTAAAACATGACCATGACACACGCCCGTGTGGCCTGCCCATCTA
Found at i:36143100 original size:47 final size:47
Alignment explanation
Indices: 36142983--36143207 Score: 228
Period size: 47 Copynumber: 4.7 Consensus size: 47
36142973 GGATAAGTTA
* * * *
36142983 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTAT-ATACG-TG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCAC-T-CATCAT-CGAGG
*
36143033 CTGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCATCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCATCGAGG
* * * *
36143080 CCGATGCATGTCCCAAACATGTCTTACACT-ACACTCATC-TCTACG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCATCGAGG
* *
36143125 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-GTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCATCGAGG
*
36143173 CCGATACATGTCCCAGACATGTCTTACACTGGCAC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCAC
36143208 ACTAGTAATC
Statistics
Matches: 150, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
45 11 0.07
46 38 0.25
47 56 0.37
48 25 0.17
49 15 0.10
50 5 0.03
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCATCGAGG
Found at i:36143145 original size:93 final size:92
Alignment explanation
Indices: 36143035--36143202 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 92
36143025 TATACGTGCT
* *
36143035 GATGCATGTCCCAGACAT-GTCTTACACTGGCTA-TCATCATCGAGGCCGATGCATGTCCCAAAC
1 GATGCATGTCCCAGACATGGTCTTACACTGGC-ACTCATAAT-GAGGCCGATACATGTCCCAAAC
36143098 ATGTCTTACACTACACTCATCTCTACGCC
64 ATGTCTTACACTACACTCATCTCTACGCC
* *
36143127 GATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATACATGTCCCAGACA
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCACTCATAATGAGGCCGATACATGTCCCAAACA
36143192 TGTCTTACACT
65 TGTCTTACACT
36143203 GGCACACTAG
Statistics
Matches: 69, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
92 4 0.06
93 46 0.67
94 19 0.28
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGAGGCCGATACATGTCCCAAACAT
GTCTTACACTACACTCATCTCTACGCC
Found at i:36159200 original size:113 final size:114
Alignment explanation
Indices: 36158997--36159247 Score: 324
Period size: 113 Copynumber: 2.2 Consensus size: 114
36158987 ACACCTAGCC
* * * *
36158997 AGCTTTGTGCCTAGCAGGCTTTGTGCTGGAGATATTTAGGCTCCGTGCCTAGCAGGCTTTATGCC
1 AGCTCTGTGCCTAGCAGGCTTTGTGCCGGAGATATTCAGGCTCCGTGCCTAGCAAGCTTTATGCC
* * * * * **
36159062 GGTGTTATTCTGGCTCTATGCCTAGTAGG-TTTGTTCCGGTGTTATTCG
66 GGTGATATTCGGGCTCTATGCCTAGTAGGCTCTATGCCGGTGACATTCG
* * * *
36159110 AGCTCTGTGCCTAGCAGGCTTTGTGCCGGTGTTATTCCGGCTCTGTGCCTAGCAAGCTTTATGCC
1 AGCTCTGTGCCTAGCAGGCTTTGTGCCGGAGATATTCAGGCTCCGTGCCTAGCAAGCTTTATGCC
* *
36159175 GGTGATATTCGGGCTCTGTGCCTAGTAGGCTCTATGCTGGTGACATTCG
66 GGTGATATTCGGGCTCTATGCCTAGTAGGCTCTATGCCGGTGACATTCG
* *
36159224 AGCTCTGTGCCTAGTAAGCTTTGT
1 AGCTCTGTGCCTAGCAGGCTTTGT
36159248 TCCAATATTA
Statistics
Matches: 118, Mismatches: 19, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
113 83 0.70
114 35 0.30
ACGTcount: A:0.14, C:0.22, G:0.29, T:0.35
Consensus pattern (114 bp):
AGCTCTGTGCCTAGCAGGCTTTGTGCCGGAGATATTCAGGCTCCGTGCCTAGCAAGCTTTATGCC
GGTGATATTCGGGCTCTATGCCTAGTAGGCTCTATGCCGGTGACATTCG
Found at i:36159229 original size:76 final size:75
Alignment explanation
Indices: 36159002--36159247 Score: 278
Period size: 76 Copynumber: 3.3 Consensus size: 75
36158992 TAGCCAGCTT
* * * ** *
36159002 TGTGCCTAGCAGGCTTTGTGCTGGAGATATTTAGGCTCCGTGCCTAGCAGGCTTTATGCCGGTGT
1 TGTGCCTAGCAAGCTTTGTGCCGGTGATATTCGGGCTCTGTGCCTAGCAGGCTTTATGCCGGTGT
36159067 TATTCTGGCTC
66 TATTC-GGCTC
* * * * * * *
36159078 TATGCCTAG-TAGGTTTGTTCCGGTGTTATTCGAGCTCTGTGCCTAGCAGGCTTTGTGCCGGTGT
1 TGTGCCTAGCAAGCTTTGTGCCGGTGATATTCGGGCTCTGTGCCTAGCAGGCTTTATGCCGGTGT
36159142 TATTCCGGCTC
66 TATT-CGGCTC
* * * * *
36159153 TGTGCCTAGCAAGCTTTATGCCGGTGATATTCGGGCTCTGTGCCTAGTAGGCTCTATGCTGGTGA
1 TGTGCCTAGCAAGCTTTGTGCCGGTGATATTCGGGCTCTGTGCCTAGCAGGCTTTATGCCGGTGT
*
36159218 CATTCGAGCTC
66 TATTCG-GCTC
*
36159229 TGTGCCTAGTAAGCTTTGT
1 TGTGCCTAGCAAGCTTTGT
36159248 TCCAATATTA
Statistics
Matches: 139, Mismatches: 28, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
75 62 0.45
76 77 0.55
ACGTcount: A:0.13, C:0.22, G:0.29, T:0.35
Consensus pattern (75 bp):
TGTGCCTAGCAAGCTTTGTGCCGGTGATATTCGGGCTCTGTGCCTAGCAGGCTTTATGCCGGTGT
TATTCGGCTC
Found at i:36159239 original size:38 final size:38
Alignment explanation
Indices: 36158997--36159237 Score: 247
Period size: 38 Copynumber: 6.4 Consensus size: 38
36158987 ACACCTAGCC
* * * * *
36158997 AGCTTTGTGCCTAGCAGGCTTTGTGCTGGAGATATT-T
1 AGCTCTGTGCCTAGCAGGCTTTATGCCGGTGATATTCG
* *
36159034 AGGCTCCGTGCCTAGCAGGCTTTATGCCGGTGTTATTCTG
1 A-GCTCTGTGCCTAGCAGGCTTTATGCCGGTGATATTC-G
* * * * *
36159074 -GCTCTATGCCTAGTAGG-TTTGTTCCGGTGTTATTCG
1 AGCTCTGTGCCTAGCAGGCTTTATGCCGGTGATATTCG
* *
36159110 AGCTCTGTGCCTAGCAGGCTTTGTGCCGGTGTTATTCCG
1 AGCTCTGTGCCTAGCAGGCTTTATGCCGGTGATATT-CG
*
36159149 -GCTCTGTGCCTAGCAAGCTTTATGCCGGTGATATTCG
1 AGCTCTGTGCCTAGCAGGCTTTATGCCGGTGATATTCG
* * * * *
36159186 GGCTCTGTGCCTAGTAGGCTCTATGCTGGTGACATTCG
1 AGCTCTGTGCCTAGCAGGCTTTATGCCGGTGATATTCG
36159224 AGCTCTGTGCCTAG
1 AGCTCTGTGCCTAG
36159238 TAAGCTTTGT
Statistics
Matches: 173, Mismatches: 24, Indels: 13
0.82 0.11 0.06
Matches are distributed among these distances:
36 1 0.01
37 34 0.20
38 136 0.79
39 2 0.01
ACGTcount: A:0.13, C:0.23, G:0.29, T:0.34
Consensus pattern (38 bp):
AGCTCTGTGCCTAGCAGGCTTTATGCCGGTGATATTCG
Found at i:36159271 original size:76 final size:75
Alignment explanation
Indices: 36159029--36159279 Score: 256
Period size: 76 Copynumber: 3.3 Consensus size: 75
36159019 GTGCTGGAGA
* * *
36159029 TATTTAGGCTCCGTGCCTAGCAGGCTTTATGCCGGTGTTATTCTGGCTCTATGCCTAGT-AGGTT
1 TATTTAGGCTCTGTGCCTAGCAGGCTTTATGCCGGTGTTATTC-GGCTCTGTGCCTAGTAAGCTT
*
36159093 TGTTCCGGTGT
65 TGTTCCGGTAT
* * *
36159104 TA-TTCGAGCTCTGTGCCTAGCAGGCTTTGTGCCGGTGTTATTCCGGCTCTGTGCCTAGCAAGCT
1 TATTTAG-GCTCTGTGCCTAGCAGGCTTTATGCCGGTGTTATT-CGGCTCTGTGCCTAGTAAGCT
* *
36159168 TTATGCCGGTGA-
64 TTGTTCCGGT-AT
** * * * **
36159180 TATTCGGGCTCTGTGCCTAGTAGGCTCTATGCTGGTGACATTCGAGCTCTGTGCCTAGTAAGCTT
1 TATTTAGGCTCTGTGCCTAGCAGGCTTTATGCCGGTGTTATTCG-GCTCTGTGCCTAGTAAGCTT
**
36159245 TGTTCCAATAT
65 TGTTCCGGTAT
* *
36159256 TATTTAGGCTATGTGCCTAACAGG
1 TATTTAGGCTCTGTGCCTAGCAGG
36159280 TTTCTTATCA
Statistics
Matches: 142, Mismatches: 27, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
74 3 0.02
75 51 0.36
76 86 0.61
77 2 0.01
ACGTcount: A:0.15, C:0.22, G:0.27, T:0.35
Consensus pattern (75 bp):
TATTTAGGCTCTGTGCCTAGCAGGCTTTATGCCGGTGTTATTCGGCTCTGTGCCTAGTAAGCTTT
GTTCCGGTAT
Found at i:36164899 original size:17 final size:18
Alignment explanation
Indices: 36164877--36164911 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
36164867 AATCTGTGTA
*
36164877 GGGCCCACGA-GCCCATT
1 GGGCCCACAAGGCCCATT
36164894 GGGCCCACAAGGCCCATT
1 GGGCCCACAAGGCCCATT
36164912 TCAGTCCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.20, C:0.40, G:0.29, T:0.11
Consensus pattern (18 bp):
GGGCCCACAAGGCCCATT
Found at i:36165756 original size:3 final size:3
Alignment explanation
Indices: 36165748--36165797 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
36165738 TCCAGGCTAC
36165748 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
36165796 AA
1 AA
36165798 ACGATGGAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36167189 original size:28 final size:28
Alignment explanation
Indices: 36167158--36167213 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
36167148 TGTAAAAATG
36167158 ACCAAATTGCATGAAATAAATAATTTTA
1 ACCAAATTGCATGAAATAAATAATTTTA
36167186 ACCAAATTGCATGAAATAAATAATTTTA
1 ACCAAATTGCATGAAATAAATAATTTTA
36167214 CTCTATAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.32
Consensus pattern (28 bp):
ACCAAATTGCATGAAATAAATAATTTTA
Found at i:36167694 original size:38 final size:38
Alignment explanation
Indices: 36167546--36167715 Score: 114
Period size: 38 Copynumber: 4.5 Consensus size: 38
36167536 TTTATTCAAG
* * * *
36167546 CTCTGTGCCTAGTAGGCTCTGTTTC-GATGTTATT-TGA
1 CTCTGTGCCTAGCAGGCTCTGTGTCAG-TGATATTCGGA
* * ** * *
36167583 GCTCTGTGCCTAGCAAGCTATGTGTGGGTGATATCCGGG
1 -CTCTGTGCCTAGCAGGCTCTGTGTCAGTGATATTCGGA
* *
36167622 CTCTGTGCCTAGCAGGCT-TCGTGCCAAT-ATTATTCGGA
1 CTCTGTGCCTAGCAGGCTCT-GTGTCAGTGA-TATTCGGA
* * * *
36167660 TTCTGTGCCTAGTAGGCTCTGTTTCAGTGATATTCGGG
1 CTCTGTGCCTAGCAGGCTCTGTGTCAGTGATATTCGGA
* *
36167698 CTCTGTACTTAGCAGGCT
1 CTCTGTGCCTAGCAGGCT
36167716 TCGTGCTGGT
Statistics
Matches: 100, Mismatches: 26, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
37 2 0.02
38 94 0.94
39 4 0.04
ACGTcount: A:0.15, C:0.22, G:0.28, T:0.35
Consensus pattern (38 bp):
CTCTGTGCCTAGCAGGCTCTGTGTCAGTGATATTCGGA
Found at i:36168498 original size:142 final size:143
Alignment explanation
Indices: 36168241--36168525 Score: 554
Period size: 142 Copynumber: 2.0 Consensus size: 143
36168231 TACCCATTTT
36168241 TTAGTTAATGGTTATAAAGTTGATAAACTTTATGAGATGGGTTAGATTTATAATTACCCCATAAA
1 TTAGTTAATGGTTATAAAGTTGATAAACTTTATGAGATGGGTTAGATTTATAATTACCCCATAAA
*
36168306 TTTCTTTATTAAAATGAAATGTTATCTTTAAAGTTTATATGAGCTTACTAAGCATTCATTGTAAC
66 TTTCTTTATTAAAATGAAATGTTATCTTTAAAGTTTATATGAGCTTACTAAGCATTCATTGCAAC
36168371 ACCCCAAACCCGG
131 ACCCCAAACCCGG
36168384 TTAGTTAATGGTTATAAAGTTGATAAACTTTATGAGATGGGTTAGATTTATAATTA-CCCATAAA
1 TTAGTTAATGGTTATAAAGTTGATAAACTTTATGAGATGGGTTAGATTTATAATTACCCCATAAA
36168448 TTTCTTTATTAAAATGAAATGTTATCTTTAAAGTTTATATGAGCTTACTAAGCATTCATTGCAAC
66 TTTCTTTATTAAAATGAAATGTTATCTTTAAAGTTTATATGAGCTTACTAAGCATTCATTGCAAC
36168513 ACCCCAAACCCGG
131 ACCCCAAACCCGG
36168526 CCTGGAAGTT
Statistics
Matches: 141, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
142 85 0.60
143 56 0.40
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (143 bp):
TTAGTTAATGGTTATAAAGTTGATAAACTTTATGAGATGGGTTAGATTTATAATTACCCCATAAA
TTTCTTTATTAAAATGAAATGTTATCTTTAAAGTTTATATGAGCTTACTAAGCATTCATTGCAAC
ACCCCAAACCCGG
Found at i:36169665 original size:27 final size:27
Alignment explanation
Indices: 36169635--36169776 Score: 169
Period size: 27 Copynumber: 5.3 Consensus size: 27
36169625 GGGGCAAAAT
* * *
36169635 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
36169662 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
36169689 GATGATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
36169716 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
36169743 AGTAATTCTACCCTAC-AGAGGTCTTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
36169770 GGTAATT
1 GGTAATT
36169777 TCACAAATCA
Statistics
Matches: 100, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.02
27 98 0.98
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:36169682 original size:54 final size:54
Alignment explanation
Indices: 36169624--36169732 Score: 121
Period size: 54 Copynumber: 2.0 Consensus size: 54
36169614 TTAACACCCT
* *
36169624 AGGGGCAAAAT-GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTAC
1 AGGGG-AAAATCGATAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTAC
* ** * * * *
36169678 AGGGGTATTTCGATGATTTTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
1 AGGGGAAAATCGATAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTAC
36169732 A
1 A
36169733 AGGGTATTTC
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
53 2 0.04
54 43 0.96
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (54 bp):
AGGGGAAAATCGATAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTAC
Found at i:36169788 original size:27 final size:27
Alignment explanation
Indices: 36169758--36169831 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
36169748 TTCTACCCTA
* * *
36169758 CAGAGGTCTTTCGGTAATTTCACAAAT
1 CAGAGGTATTTTGGTAATTTCACAAAC
*
36169785 CAGAGGTATTTTGGTAATTTTACAAAC
1 CAGAGGTATTTTGGTAATTTCACAAAC
*
36169812 CAGGGGTATTTTGGTAATTT
1 CAGAGGTATTTTGGTAATTT
36169832 TATTGATCGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (27 bp):
CAGAGGTATTTTGGTAATTTCACAAAC
Found at i:36169802 original size:81 final size:81
Alignment explanation
Indices: 36169634--36169803 Score: 198
Period size: 81 Copynumber: 2.1 Consensus size: 81
36169624 AGGGGCAAAA
* * * * *
36169634 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGATGATTTTA
1 TGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGAGGTATTTCGATAATTTCA
** *
36169699 CCCTACAGGGGTATTT
66 CAATACAGAGGTATTT
** * * * *
36169715 CAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGAGGTCTTTCGGTAATTTCA
1 TGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGAGGTATTTCGATAATTTCA
36169780 CAA-ATCAGAGGTATTT
66 CAATA-CAGAGGTATTT
36169796 TGGTAATT
1 TGGTAATT
36169804 TTACAAACCA
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 1 0.01
81 71 0.99
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (81 bp):
TGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGAGGTATTTCGATAATTTCA
CAATACAGAGGTATTT
Found at i:36169828 original size:54 final size:54
Alignment explanation
Indices: 36169770--36169876 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
36169760 GAGGTCTTTC
*
36169770 GGTAATTTCACAAATC-AGAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTCACAAATCGAG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
* *** **
36169824 GGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
1 GGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
36169877 CAATAATTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 43 0.96
55 2 0.04
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (54 bp):
GGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
Found at i:36169832 original size:27 final size:27
Alignment explanation
Indices: 36169770--36169876 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 27
36169760 GAGGTCTTTC
* * *
36169770 GGTAATTTCACAAATCAGAGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
36169797 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*** *
36169824 GGTAATTTTATTGATC-GAGGGTATTTT
1 GGTAATTTTACAAACCAG-GGGTATTTT
** *
36169851 GGTAATTTTGTAAACCAAGGGTATTT
1 GGTAATTTTACAAACCAGGGGTATTT
36169877 CAATAATTTT
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.02
27 65 0.98
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGTAATTTTACAAACCAGGGGTATTTT
Found at i:36169899 original size:54 final size:53
Alignment explanation
Indices: 36169772--36169900 Score: 132
Period size: 54 Copynumber: 2.4 Consensus size: 53
36169762 GGTCTTTCGG
* * * ***
36169772 TAATTTCACAAATCAGAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTATAAATCAG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAA
** **
36169826 TAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAA
1 TAATTTTATAAATC-AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAA
*
36169880 TAATTTTGTAAATCAAGGGTA
1 TAATTTTATAAATC-AGGGTA
36169901 AAATGGTAAT
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
54 58 0.97
55 2 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (53 bp):
TAATTTTATAAATCAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAA
Found at i:36169948 original size:27 final size:27
Alignment explanation
Indices: 36169918--36170012 Score: 111
Period size: 27 Copynumber: 3.5 Consensus size: 27
36169908 AATTCTATCT
* *
36169918 TATTTCGGTAATTTTACAAATAGAGGA
1 TATTTCGGTAATTTTACAAATCGAGGG
* * *
36169945 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
*
36169972 TACTTT-GGTAATTTTACAAGTCGAGGG
1 TA-TTTCGGTAATTTTACAAATCGAGGG
*
36169999 TATTTCAGTAATTT
1 TATTTCGGTAATTT
36170013 GGTAAACTAA
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.05
27 51 0.89
28 3 0.05
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATCGAGGG
Found at i:36171983 original size:6 final size:6
Alignment explanation
Indices: 36171963--36172056 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
36171953 AAGAAACATT
* * *
36171963 ATCAGA A-CTAGA ATCAAA ATCAGA ATCATA ATCAGA ATCAGGTG AT-AGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * *
36172012 ATTAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
36172057 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 5 0.07
6 55 0.80
7 6 0.09
8 3 0.04
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:36172044 original size:31 final size:31
Alignment explanation
Indices: 36171980--36172056 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
36171970 CTAGAATCAA
* * *
36171980 AATCAGAATCATAATCAGAATCAGGTGATAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAG
* *
36172011 AATTAGAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAG
*
36172042 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
36172057 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.22
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAG
Found at i:36172482 original size:27 final size:27
Alignment explanation
Indices: 36172452--36172592 Score: 185
Period size: 27 Copynumber: 5.2 Consensus size: 27
36172442 GGGCAAAATG
* * * *
36172452 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36172479 GTAATTCTACCCTACAGGGGTCTTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36172505 GATAATTTTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
36172533 GTAATTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36172560 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
36172587 GTAATT
1 GTAATT
36172593 TCACAAACTA
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 97 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:36172608 original size:54 final size:54
Alignment explanation
Indices: 36172453--36172611 Score: 162
Period size: 54 Copynumber: 2.9 Consensus size: 54
36172443 GGCAAAATGG
* * * * ** *
36172453 TAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTCTTTCGA
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCAAACAGGGGTATTTCGA
* ** *
36172507 TAATTTTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAAGGGTATTTC-A
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCAAACAGGGGTATTTCGA
*
36172560 GTAATTCTACCCTACAGGGGTATTTCGGTAATT-T-CACAAACTAGGGGTATTT
1 -TAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC-CAAAC-AGGGGTATTT
36172612 TGGTAATTTT
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
52 1 0.01
53 5 0.05
54 85 0.93
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (54 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCAAACAGGGGTATTTCGA
Found at i:36172618 original size:81 final size:81
Alignment explanation
Indices: 36172450--36172619 Score: 225
Period size: 81 Copynumber: 2.1 Consensus size: 81
36172440 AGGGGCAAAA
* * *
36172450 TGGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTCTTTCGATAATTTTA
1 TGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTTCA
**
36172515 CCCTACAGGGGTATTT
66 CCAAACAGGGGTATTT
** ** * *
36172531 CAGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTTCA
1 TGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTTCA
36172596 -CAAACTAGGGGTATTT
66 CCAAAC-AGGGGTATTT
36172612 TGGTAATT
1 TGGTAATT
36172620 TTATTGATCG
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
80 3 0.04
81 72 0.96
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (81 bp):
TGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTTCA
CCAAACAGGGGTATTT
Found at i:36172711 original size:27 final size:27
Alignment explanation
Indices: 36172669--36172782 Score: 203
Period size: 27 Copynumber: 4.3 Consensus size: 27
36172659 GGTATTTCAA
36172669 TAATT-TGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
36172695 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
36172722 TAAATCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
36172749 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
36172776 TAATTCT
1 TAATTCT
36172783 ATCTTATTTC
Statistics
Matches: 83, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
26 5 0.06
27 78 0.94
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAATGG
Found at i:36172817 original size:27 final size:27
Alignment explanation
Indices: 36172787--36172881 Score: 120
Period size: 27 Copynumber: 3.5 Consensus size: 27
36172777 AATTCTATCT
*
36172787 TATTTCGGTAATTTTACAAATTGAGGA
1 TATTTCGGTAATTTTACAAATTGAGGG
* * *
36172814 TATTTGGGTAATTTTATAAATTGGGGG
1 TATTTCGGTAATTTTACAAATTGAGGG
*
36172841 TACTTT-GGTAATTTTACAAGTTGAGGG
1 TA-TTTCGGTAATTTTACAAATTGAGGG
*
36172868 TATTTCAGTAATTT
1 TATTTCGGTAATTT
36172882 GGTAAACTAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.05
27 52 0.90
28 3 0.05
ACGTcount: A:0.28, C:0.05, G:0.22, T:0.44
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATTGAGGG
Found at i:36182954 original size:40 final size:40
Alignment explanation
Indices: 36182855--36183085 Score: 322
Period size: 40 Copynumber: 5.8 Consensus size: 40
36182845 TGGATGATAA
* * * * * **
36182855 CCGGGCTAAGTCCTGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
36182895 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
36182934 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
36182974 CCGGGCTAAGTCTCGAAGGCATTTGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
36183014 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCAAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* * *
36183054 CAGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
36183086 AGCTATATCT
Statistics
Matches: 173, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 32 0.18
40 138 0.80
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:36185285 original size:68 final size:70
Alignment explanation
Indices: 36185213--36185410 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
36185203 ACACCCTGTA
* * * *
36185213 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
36185275 ATAAAT
65 ATAAAT
*
36185281 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
36185346 ATAAAT
65 ATAAAT
*
36185352 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
36185411 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:36185324 original size:41 final size:41
Alignment explanation
Indices: 36185279--36185396 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
36185269 TGAAAGATAA
36185279 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
36185320 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
36185350 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
36185391 ATGTAG
1 ATGTAG
36185397 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:36185336 original size:71 final size:71
Alignment explanation
Indices: 36185247--36185410 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
36185237 GAGATGTATC
36185247 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
36185312 AGGACA
66 AGGACA
36185318 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
36185383 AGGACA
66 AGGACA
36185389 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
36185411 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:36192854 original size:68 final size:70
Alignment explanation
Indices: 36192782--36192979 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
36192772 ACACCCTGTA
* * * *
36192782 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
36192844 ATAAAT
65 ATAAAT
*
36192850 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
36192915 ATAAAT
65 ATAAAT
*
36192921 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
36192980 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:36192893 original size:41 final size:41
Alignment explanation
Indices: 36192848--36192965 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
36192838 TGAAAGATAA
36192848 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
36192889 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
36192919 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
36192960 ATGTAG
1 ATGTAG
36192966 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:36192905 original size:71 final size:71
Alignment explanation
Indices: 36192816--36192979 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
36192806 GAGATGTATC
36192816 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
36192881 AGGACA
66 AGGACA
36192887 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
36192952 AGGACA
66 AGGACA
36192958 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
36192980 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:36200157 original size:40 final size:40
Alignment explanation
Indices: 36200049--36200258 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
36200039 CGGGATTTAA
* * * * *
36200049 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
36200089 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36200129 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36200169 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36200209 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36200249 CCGGATATAT
1 CCGGATATAT
36200259 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:36208689 original size:21 final size:21
Alignment explanation
Indices: 36208665--36208708 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
36208655 GTTAAAACAA
36208665 AAAATACTAATCAAATGT-CCT
1 AAAATAC-AATCAAATGTACCT
* *
36208686 AAAATGCAATTAAATGTACCT
1 AAAATACAATCAAATGTACCT
36208707 AA
1 AA
36208709 GTATAGGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.50, C:0.16, G:0.07, T:0.27
Consensus pattern (21 bp):
AAAATACAATCAAATGTACCT
Found at i:36211018 original size:45 final size:45
Alignment explanation
Indices: 36210954--36211039 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
36210944 ATTGACGGTT
*
36210954 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATCGGTAAGGC
* *
36210999 AAGGATCCCGTGTAAGACCATGTCAAGACATGGCATCGGTA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATCGGTA
36211040 TTGATTAAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.34, C:0.20, G:0.27, T:0.20
Consensus pattern (45 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATCGGTAAGGC
Found at i:36211956 original size:27 final size:27
Alignment explanation
Indices: 36211925--36212535 Score: 169
Period size: 27 Copynumber: 22.6 Consensus size: 27
36211915 TTAGTTTACC
* *
36211925 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
36211952 AAATT-CCCAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
** *
36211979 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
36212006 AAATTA-TAGAAATACCCTC-AGTTTGCA
1 AAATTACT-GAAATACCCTCGA-TTTGTA
36212033 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
**
36212060 AAATTACTGAAATACTCCT-G-TAAGATA
1 AAATTACTGAAATAC-CCTCGATTTG-TA
* * ** **
36212087 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* *** *
36212114 GAATTA-TCGTTTTACCCTCGATTTATA
1 AAATTACT-GAAATACCCTCGATTTGTA
* ** *
36212141 GAATTACT-ATTTTTACCCTCGATTTATA
1 AAATTACTGA--AATACCCTCGATTTGTA
* * *** *
36212169 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
* ** **
36212196 GAATTACT-ATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* * *** *
36212223 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
* * ** *
36212250 GAATTAC-CATTTTACCCTCGATTTATA
1 AAATTACTGA-AATACCCTCGATTTGTA
* * *** **
36212277 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACTGAAATACCCTCGATTTGTA
* ** * **
36212304 GAATTACT-ATTTTATCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* * **
36212331 AAATTATTGAAATACCCT-TAGTTTACA
1 AAATTACTGAAATACCCTCGA-TTTGTA
** **
36212358 AAATTACCAAAATACCCTCGATCAGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
36212385 AAATTACCAAAATGCCC-CTGGTTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
36212412 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* * *
36212439 AAATTACTAAAATACCCTTGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
36212466 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
36212493 AAATTA-TCAAAATACTCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
36212520 TAA-TA-TCGAAATACCC
1 AAATTACT-GAAATACCC
36212536 CTGTAGGGTA
Statistics
Matches: 477, Mismatches: 77, Indels: 61
0.78 0.13 0.10
Matches are distributed among these distances:
26 24 0.05
27 413 0.87
28 40 0.08
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:36212073 original size:81 final size:82
Alignment explanation
Indices: 36211925--36212078 Score: 188
Period size: 81 Copynumber: 1.9 Consensus size: 82
36211915 TTAGTTTACC
*
36211925 AAATTACTGAAATACCCTCAACTTGTAAAATTCCCAAAGTACCCCCGATTTATAAAATTACCCAA
1 AAATTACTGAAATACCCTCAACTTGCAAAATTCCCAAAGTACCCCCGATTTATAAAATTACCCAA
36211990 ATA-TCCTCGATTTGTA
66 ATACTCCTCGATTTGTA
** ** * * **
36212006 AAATTA-TAGAAATACCCTCAGTTTGCAAAATTACTGAAA-TACCCTCGATTTGTAAAATTACTG
1 AAATTACT-GAAATACCCTCAACTTGCAAAATT-CCCAAAGTACCCCCGATTTATAAAATTACCC
36212069 AAATACTCCT
64 AAATACTCCT
36212079 GTAAGATAGA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
80 1 0.02
81 52 0.85
82 8 0.13
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (82 bp):
AAATTACTGAAATACCCTCAACTTGCAAAATTCCCAAAGTACCCCCGATTTATAAAATTACCCAA
ATACTCCTCGATTTGTA
Found at i:36212336 original size:54 final size:54
Alignment explanation
Indices: 36212084--36212336 Score: 425
Period size: 54 Copynumber: 4.7 Consensus size: 54
36212074 CTCCTGTAAG
* *
36212084 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
*
36212138 ATAGAATTACTATTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACTA-TTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
36212193 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
* *
36212247 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
* * *
36212301 ACAGAATTACTATTTTATCCTCGATTTACAAAATTA
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTA
36212337 TTGAAATACC
Statistics
Matches: 187, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
54 135 0.72
55 52 0.28
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (54 bp):
ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
Found at i:36212336 original size:81 final size:81
Alignment explanation
Indices: 36212084--36212328 Score: 400
Period size: 81 Copynumber: 3.0 Consensus size: 81
36212074 CTCCTGTAAG
* * *
36212084 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACT
36212149 ATTTTTACCCTCGATTT
66 A-TTTTACCCTCGATTT
* ** *
36212166 ATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACT
*
36212231 GTTTTACCCTCGATTT
66 ATTTTACCCTCGATTT
36212247 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACT
*
36212312 ATTTTATCCTCGATTT
66 ATTTTACCCTCGATTT
36212328 A
1 A
36212329 CAAAATTATT
Statistics
Matches: 149, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
81 91 0.61
82 58 0.39
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (81 bp):
ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACT
ATTTTACCCTCGATTT
Found at i:36212415 original size:81 final size:81
Alignment explanation
Indices: 36212330--36212507 Score: 223
Period size: 81 Copynumber: 2.2 Consensus size: 81
36212320 CTCGATTTAC
* *
36212330 AAAATTATTGAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTATTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTCGACT-AGTAAAATTACCA
* *
36212394 AAATGCCCCTGGTTTGT
65 AAATACCCCTGATTTGT
* * ** * * *
36212411 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGACTTGTAAAATTACCAA
1 AAAATTATTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTCGACTAGTAAAATTACCAA
36212476 AATACCCCTGATTTGT
66 AATACCCCTGATTTGT
* *
36212492 GAAATTATCAAAATAC
1 AAAATTATTAAAATAC
36212508 TCTCGATTTG
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 81 0.99
82 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTATTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTCGACTAGTAAAATTACCAA
AATACCCCTGATTTGT
Found at i:36212491 original size:54 final size:54
Alignment explanation
Indices: 36212330--36212538 Score: 192
Period size: 54 Copynumber: 3.9 Consensus size: 54
36212320 CTCGATTTAC
* * ** **
36212330 AAAATTATTGAAATACCCTT-AGTTTACAAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACTAAAATACCCTTGA-TTTGTAAAATTACCAAAATACCCCT-GATTTGT
* * * * * *
36212384 AAAATTACCAAAATGCCCCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGT
*
36212438 AAAATTACTAAAATACCCTTGACTTGTAAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGT
* * * * * *
36212492 GAAATTA-TCAAAATACTCTCGATTTGTATAA-TATCGAAATACCCCTG
1 AAAATTACT-AAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTG
36212539 TAGGGTAGAA
Statistics
Matches: 126, Mismatches: 26, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
53 15 0.12
54 107 0.85
55 4 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGT
Found at i:36212570 original size:27 final size:27
Alignment explanation
Indices: 36212526--36212669 Score: 207
Period size: 27 Copynumber: 5.3 Consensus size: 27
36212516 TGTATAATAT
36212526 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* **
36212553 TGAAATACCCCTAAAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
36212580 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
36212607 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
36212634 TGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
36212661 CGAGATACC
1 CGAAATACC
36212670 TTGTGAGGTA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:36212632 original size:81 final size:80
Alignment explanation
Indices: 36212521--36212673 Score: 243
Period size: 81 Copynumber: 1.9 Consensus size: 80
36212511 CGATTTGTAT
*
36212521 AATATCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTAAAGGGTAGAATTACCGAAAT
1 AATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTAAAGGGTAGAATTACCGAAAT
36212586 ACCCTTGTAGGGTAGA
66 A-CCTTGTAGGGTAGA
* ** * *
36212602 AATACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAGAT
1 AATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTAAAGGGTAGAATTACCGAAAT
36212667 ACCTTGT
66 ACCTTGT
36212674 GAGGTAAAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
80 6 0.09
81 60 0.91
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (80 bp):
AATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTAAAGGGTAGAATTACCGAAAT
ACCTTGTAGGGTAGA
Found at i:36213151 original size:25 final size:25
Alignment explanation
Indices: 36213123--36213183 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
36213113 ATACCAATTT
* *
36213123 TGATTTTGATTCTGTTACCTAATAC
1 TGATTCTGATTCTGTCACCTAATAC
*
36213148 TGATTCTGATTCTGTCACCTAATTC
1 TGATTCTGATTCTGTCACCTAATAC
36213173 TGATTCTGATT
1 TGATTCTGATT
36213184 TTGATTCTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (25 bp):
TGATTCTGATTCTGTCACCTAATAC
Found at i:36213158 original size:31 final size:31
Alignment explanation
Indices: 36213088--36213191 Score: 112
Period size: 31 Copynumber: 3.5 Consensus size: 31
36213078 TTGCATTCAC
* **
36213088 ATTCTGATTTTGATTCTGTTACCTGATACCA
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
*
36213119 ATTTTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* *
36213150 ATTC------TGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
36213175 ATTCTGATTTTGATTCT
1 ATTCTGATTTTGATTCT
36213192 AGTTCTGATA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
25 23 0.38
31 37 0.62
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTAATACTG
Found at i:36214065 original size:55 final size:54
Alignment explanation
Indices: 36213940--36214244 Score: 339
Period size: 55 Copynumber: 5.6 Consensus size: 54
36213930 TTGGTAAGAT
* * * *
36213940 AAGGATATCATGTAAGACAATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * * * *
36213994 TAGGAAATCATGTAAGACCATGTCAAGACATGGCATTAATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
36214049 AAAGG-TTCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
36214102 AAGGATACAATGTAAGACGATGTCAAGACATGGAATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
36214157 AAATG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
36214210 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
36214245 ATGGTAAGTT
Statistics
Matches: 209, Mismatches: 35, Indels: 15
0.81 0.14 0.06
Matches are distributed among these distances:
52 7 0.03
53 73 0.35
54 42 0.20
55 81 0.39
56 6 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:36214147 original size:108 final size:107
Alignment explanation
Indices: 36213948--36214242 Score: 446
Period size: 108 Copynumber: 2.7 Consensus size: 107
36213938 ATAAGGATAT
* * * * *
36213948 CATGTAAGACAATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCTAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATA-CATGTAAGACC
* *
36214013 ATGTCAAGACATGGCATTAATAAGTTACTATAAGGCAAAGGTTC
64 ATGTCAAGACATGGAATTAATAAGTTACTATAAGGCAAAGGTCC
*
36214057 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACAATGTAAGACGA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATAC-ATGTAAGACCA
* * *
36214122 TGTCAAGACATGGAATTGATGAGTTACTATAAGGCAAATGTCC
65 TGTCAAGACATGGAATTAATAAGTTACTATAAGGCAAAGGTCC
*
36214165 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATA-CATGTAAGACCA
36214230 TGTCAAGACATGG
65 TGTCAAGACATGG
36214243 CAATGGTAAG
Statistics
Matches: 171, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
107 1 0.01
108 134 0.78
109 36 0.21
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (107 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACATGTAAGACCAT
GTCAAGACATGGAATTAATAAGTTACTATAAGGCAAAGGTCC
Found at i:36214256 original size:53 final size:54
Alignment explanation
Indices: 36213940--36214255 Score: 334
Period size: 53 Copynumber: 5.9 Consensus size: 54
36213930 TTGGTAAGAT
* * *
36213940 AAGGATATCATGTAAGACAATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
36213994 TAGGAAATCATGTAAGACCATGTCAAGACATGGCATTAATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
36214049 AAAGG-TTCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
36214102 AAGGATACAATGTAAGACGATGTCAAGACATGGAATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * * *
36214157 AAATG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
36214210 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
36214256 AAAAAGGAAA
Statistics
Matches: 218, Mismatches: 37, Indels: 15
0.81 0.14 0.06
Matches are distributed among these distances:
52 7 0.03
53 82 0.38
54 42 0.19
55 81 0.37
56 6 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:36215605 original size:6 final size:6
Alignment explanation
Indices: 36215587--36215674 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
36215577 AAGAAACATT
*
36215587 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGGTA A-CAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
36215636 ATCAGA ATCAGT ATCAGGTA A-CAAA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
36215675 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
5 5 0.07
6 53 0.78
7 7 0.10
8 3 0.04
ACGTcount: A:0.51, C:0.16, G:0.15, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:36215608 original size:18 final size:18
Alignment explanation
Indices: 36215587--36215674 Score: 74
Period size: 19 Copynumber: 4.8 Consensus size: 18
36215577 AAGAAACATT
36215587 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
36215605 ATCAGAATCAGAATCAGGTA
1 ATCAGAATCAGAATCA-G-A
*
36215625 A-CAGAATCAAAATCAGA
1 ATCAGAATCAGAATCAGA
* *
36215642 ATCAGTATCAGGTAA-CAAA
1 ATCAGAATCA-G-AATCAGA
*
36215661 ATCAAAATCAGAAT
1 ATCAGAATCAGAAT
36215675 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
17 4 0.07
18 23 0.40
19 26 0.46
20 4 0.07
ACGTcount: A:0.51, C:0.16, G:0.15, T:0.18
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:36215639 original size:31 final size:31
Alignment explanation
Indices: 36215596--36215674 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
36215586 TATCAGAACT
*
36215596 AGAATCAGAATCAGAATCAGAATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
36215627 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
36215658 AAAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
36215675 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:36215660 original size:25 final size:24
Alignment explanation
Indices: 36215601--36215671 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 24
36215591 GAACTAGAAT
*
36215601 CAGAATCAGAATCAGAATCAGGTAA
1 CAGAATCAAAATCAGAATCA-GTAA
*
36215626 CAGAATCAAAATCAGAATCAGTAT
1 CAGAATCAAAATCAGAATCAGTAA
*
36215650 CAGGTAA-CAAAATCAAAATCAG
1 CA-G-AATCAAAATCAGAATCAG
36215672 AATGTGAATG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
24 5 0.12
25 34 0.83
26 2 0.05
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (24 bp):
CAGAATCAAAATCAGAATCAGTAA
Found at i:36215834 original size:27 final size:26
Alignment explanation
Indices: 36215794--36215879 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 26
36215784 AGCATGGCTG
* *
36215794 CCAGAACAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
36215820 CCAGATACAAATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
36215847 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
*
36215874 ACAGAA
1 CCAGAA
36215880 ATAGATAATG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 11 0.22
27 40 0.78
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:36215891 original size:27 final size:27
Alignment explanation
Indices: 36215795--36215900 Score: 74
Period size: 27 Copynumber: 4.0 Consensus size: 27
36215785 GCATGGCTGC
** * * *
36215795 CAGAACAGATAT-TGTGATAGAGTCAC
1 CAGAACAGATATATGTGGCAAAGCCAA
* * *
36215821 CAGATACAAATAT-TGTGGCAGAGCCAC
1 CAGA-ACAGATATATGTGGCAAAGCCAA
* *
36215848 CAGAACAGATATTTGTGGCATAGCCAA
1 CAGAACAGATATATGTGGCAAAGCCAA
*
36215875 CAGAAATAGATA-ATGTGGCAAAGCCA
1 CAG-AACAGATATATGTGGCAAAGCCA
36215901 CGTAACAGAA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 11 0.16
27 49 0.73
28 7 0.10
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.20
Consensus pattern (27 bp):
CAGAACAGATATATGTGGCAAAGCCAA
Found at i:36216097 original size:22 final size:22
Alignment explanation
Indices: 36216060--36216123 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
36216050 GCAAATACGT
* *
36216060 TTGGCACATAGACATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
36216082 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
36216104 TTGGTGCAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
36216124 AAATAATTGG
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:36217006 original size:27 final size:27
Alignment explanation
Indices: 36216514--36216997 Score: 628
Period size: 27 Copynumber: 17.9 Consensus size: 27
36216504 GGCAAAATAA
* * * *
36216514 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
36216541 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
36216568 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * * * * * *
36216595 TATTTTTACCCTATAAGGGTATATAGA
1 TAATTCTACCCTACAGGGGTATTTCGG
* **
36216622 TAATTCTACCCTATAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
36216649 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGG
*
36216676 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGG
36216703 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
36216730 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGG
36216757 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
36216784 TAATTCTACCCTACAGGGGTA-TTCTAG
1 TAATTCTACCCTACAGGGGTATTTC-GG
36216811 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
36216838 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
36216865 TAATTCTACCCTATAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
* ** *
36216892 TAATTCTACCTTGTAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * * **
36216919 TAATTCTATCCTACAAGGGTTTTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
36216946 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
36216973 TAATTTTACCCTACAAGGGTATTTC
1 TAATTCTACCCTACAGGGGTATTTC
36216998 AATAATTTTG
Statistics
Matches: 409, Mismatches: 46, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 3 0.01
27 403 0.99
28 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGG
Found at i:36217047 original size:81 final size:81
Alignment explanation
Indices: 36216961--36217174 Score: 216
Period size: 81 Copynumber: 2.6 Consensus size: 81
36216951 CTACCCTACA
* **
36216961 AGGGTATTTCGATAATTTTAC-CCTACAAGGGTATTTCAATAATTTTGTAAATCGAGGGTAAAAC
1 AGGGTATTTCGATAATTTTACAACT-CAAGGGTATTTCAATAATTTTACAAATCGAGGGTAAAAC
* *
36217025 GGTAATTCTGTAAATTG
65 AGTAATTCTGCAAATTG
* * * * * ***
36217042 GGGGTACTTT-GGTAATTTTACAAGTCAAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTC
1 AGGGTA-TTTCGATAATTTTACAACTCAAGGGTATTTCAATAATTTTACAAATCGAGGGTAAAAC
*
36217106 AGTAATTTTGCAAATTG
65 AGTAATTCTGCAAATTG
* * * * * *
36217123 AGGGCATTTCAATAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAAT
1 AGGGTATTTCGATAATTTTACAACTCAAGGGTATTTCAATAATTTTACAAAT
36217175 TGGGCTATTT
Statistics
Matches: 110, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 3 0.03
81 103 0.94
82 4 0.04
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.38
Consensus pattern (81 bp):
AGGGTATTTCGATAATTTTACAACTCAAGGGTATTTCAATAATTTTACAAATCGAGGGTAAAACA
GTAATTCTGCAAATTG
Found at i:36217073 original size:27 final size:27
Alignment explanation
Indices: 36217043--36217293 Score: 236
Period size: 27 Copynumber: 9.3 Consensus size: 27
36217033 TGTAAATTGG
* * *
36217043 GGGTACTTTGGTAATTTTACAAGTCAA
1 GGGTATTTTAGTAATTTTACAAATCAA
*
36217070 GGGTATTTTAGTAATTTTACAAATCGA
1 GGGTATTTTAGTAATTTTACAAATCAA
* * **
36217097 GGGTATTTCAGTAATTTTGCAAATTGA
1 GGGTATTTTAGTAATTTTACAAATCAA
* * * *
36217124 GGGCATTTCAATAATTTTACAAATCGA
1 GGGTATTTTAGTAATTTTACAAATCAA
*
36217151 GGGTATTTTAGTAATTTTACAAAT--T
1 GGGTATTTTAGTAATTTTACAAATCAA
* * * *
36217176 GGGCTATTTTGGTGATTTTATAAACCAA
1 GGG-TATTTTAGTAATTTTACAAATCAA
* * *
36217204 GGGTATTCTAGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAATCAA
* ** *
36217231 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAATCAA
* * *
36217258 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAATCAA
36217285 GGGTATTTT
1 GGGTATTTT
36217294 GGTGATTTGG
Statistics
Matches: 188, Mismatches: 33, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
25 3 0.02
26 17 0.09
27 165 0.88
28 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAATCAA
Found at i:36217273 original size:134 final size:134
Alignment explanation
Indices: 36217049--36217293 Score: 305
Period size: 134 Copynumber: 1.8 Consensus size: 134
36217039 TTGGGGGTAC
** * *
36217049 TTTGGTAATTTTACAAGTCAAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
1 TTTGGTAATTTTACAAACCAAGGGTATTCTAGTAATTTTACAAACCGAGGGTATTTCAGTAATTT
*** *
36217114 TGCAAATTGAGGGCATTTCAATAATTTTACAAATC-GAGGGTATTTTAGTAATTTTACAAATTGG
66 TGCAAACCAAGGGCATTTCAATAATTTTACAAACCAG-GGGTATTTTAGTAATTTTACAAATTGG
36217178 GCTAT
130 GCTAT
* * **
36217183 TTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACC-AGGGGTATTTTGGTAATT
1 TTTGGTAATTTTACAAACCAAGGGTATTCTAGTAATTTTACAAACCGA-GGGTATTTCAGTAATT
* * ***
36217247 TTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
65 TTGCAAACCAAGGGCATTTCAATAATTTTACAAACCAGGGGTATTTT
36217294 GGTGATTTGG
Statistics
Matches: 92, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
133 1 0.01
134 90 0.98
135 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (134 bp):
TTTGGTAATTTTACAAACCAAGGGTATTCTAGTAATTTTACAAACCGAGGGTATTTCAGTAATTT
TGCAAACCAAGGGCATTTCAATAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAATTGGG
CTAT
Found at i:36220265 original size:27 final size:28
Alignment explanation
Indices: 36220235--36220334 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
36220225 ATAGTGAGTC
36220235 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
36220262 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
36220290 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
36220321 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36220335 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:36221188 original size:7 final size:7
Alignment explanation
Indices: 36221178--36221202 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36221168 TCATCACCAC
36221178 AACATCA
1 AACATCA
36221185 AACATCA
1 AACATCA
36221192 AACATCA
1 AACATCA
36221199 AACA
1 AACA
36221203 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:36228130 original size:27 final size:28
Alignment explanation
Indices: 36228100--36228199 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
36228090 ATAGTGAGTC
36228100 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
36228127 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
36228155 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
36228186 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36228200 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:36229053 original size:7 final size:7
Alignment explanation
Indices: 36229043--36229067 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36229033 TCATCACCAC
36229043 AACATCA
1 AACATCA
36229050 AACATCA
1 AACATCA
36229057 AACATCA
1 AACATCA
36229064 AACA
1 AACA
36229068 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:36236080 original size:38 final size:38
Alignment explanation
Indices: 36236038--36236115 Score: 120
Period size: 38 Copynumber: 2.1 Consensus size: 38
36236028 TGTAATGTTG
* *
36236038 TTCGGGATATGTGCCTAACAGGCTTTGTGTTGGTGATA
1 TTCGGGATATGTGCCTAACAGGCTGTGTGCTGGTGATA
* *
36236076 TTCGGGCTCTGTGCCTAACAGGCTGTGTGCTGGTGATA
1 TTCGGGATATGTGCCTAACAGGCTGTGTGCTGGTGATA
36236114 TT
1 TT
36236116 GGGTTTGTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.15, C:0.17, G:0.32, T:0.36
Consensus pattern (38 bp):
TTCGGGATATGTGCCTAACAGGCTGTGTGCTGGTGATA
Found at i:36238543 original size:22 final size:23
Alignment explanation
Indices: 36238515--36238569 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
36238505 TAACTCGTTT
* *
36238515 GAGCTTACTG-TTCATCTTGATA
1 GAGCTTACTGTTTCAGCTTAATA
*
36238537 GAGCTTACCGTTTCAGCTTAATA
1 GAGCTTACTGTTTCAGCTTAATA
36238560 GAGCTTACTG
1 GAGCTTACTG
36238570 CTCAAGAGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 9 0.32
23 19 0.68
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTTAATA
Found at i:36240407 original size:40 final size:39
Alignment explanation
Indices: 36240287--36240480 Score: 228
Period size: 40 Copynumber: 4.9 Consensus size: 39
36240277 TGTGTATGAA
*
36240287 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
36240326 TGTTG-GAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TG-TGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * * *
36240365 TGTGCGAGCTATGATATCCGGGATAAACTCCAAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGC-CCGAAGGCAAT
* *
36240405 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* * * * *
36240445 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGG
36240481 TGTTTGAACA
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
38 2 0.02
39 56 0.42
40 74 0.56
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:36240417 original size:79 final size:79
Alignment explanation
Indices: 36240298--36240450 Score: 229
Period size: 79 Copynumber: 1.9 Consensus size: 79
36240288 GTGCGAATTG
* * *
36240298 TGATATCCGGGCTAAGCCCGAAGGCAATTGTTGGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGATAAACCCAAAGGCAATTGTTGGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
36240362 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
*
36240376 TGATATCCGGGATAAACTCCAAAGGCAATTG-TGCGAGTTGTGATATCCGGGTTAAGTCCCGAAG
1 TGATATCCGGGATAAAC-CCAAAGGCAATTGTTG-GAGTTGTGATATCCGGGCTAAGTCCCGAAG
*
36240440 GCATTTGTGCG
64 GCAATTGTGCG
36240451 GGTTATCATA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
78 17 0.25
79 33 0.49
80 17 0.25
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (79 bp):
TGATATCCGGGATAAACCCAAAGGCAATTGTTGGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Done.