Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 130 of 378
Found at i:36698808 original size:30 final size:28
Alignment explanation
Indices: 36698740--36698805 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
36698730 GTTTATAGCA
* *
36698740 TGAG-AATATATATGTGTGAAAATTGTG
1 TGAGTAATTTATATCTGTGAAAATTGTG
36698767 TGAGTAATTTATATCTGTGAAAATTGTG
1 TGAGTAATTTATATCTGTGAAAATTGTG
36698795 TGAGCTAATTT
1 TGAG-TAATTT
36698806 TATTGTTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 4 0.11
28 25 0.71
29 6 0.17
ACGTcount: A:0.33, C:0.03, G:0.23, T:0.41
Consensus pattern (28 bp):
TGAGTAATTTATATCTGTGAAAATTGTG
Found at i:36699932 original size:43 final size:43
Alignment explanation
Indices: 36699884--36700074 Score: 213
Period size: 43 Copynumber: 4.4 Consensus size: 43
36699874 TGCCGAGATG
* *
36699884 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTT
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTA-TT
* *
36699927 TGATTATGTGTAAGACCATGTCTGGGACATTGGCATGGTTATT
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATT
** * *
36699970 CAATTACGTGTAAGACCATGTCTAGGACATTGGCAGCGTTATT
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATT
* * * * * *
36700013 CGATTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGATATG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATT
** *
36700056 TGACGACATGTAAGACCAT
1 TGATTACGTGTAAGACCAT
36700075 ATTTGGGATA
Statistics
Matches: 124, Mismatches: 23, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
43 122 0.98
44 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATT
Found at i:36705581 original size:40 final size:40
Alignment explanation
Indices: 36705525--36705727 Score: 214
Period size: 40 Copynumber: 5.1 Consensus size: 40
36705515 CGGAATTCAA
** ** *
36705525 CCGGATATAGCTACTCGCTTGAATGCCTTCGGGACATAGC
1 CCGGATATAGGAACTCGCACGAATGCCTTCGGGACTTAGC
* * *
36705565 CTGGTTATAGGAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGGAACTCGCACGAATGCCTTCGGGACTTAGC
* *
36705605 CCGGATATAGTAACTCGCACGAATGCCTTCCGGACTTAGC
1 CCGGATATAGGAACTCGCACGAATGCCTTCGGGACTTAGC
**
36705645 CCGGATATAATAACTCGCAC-AATTGCCTTCGGG-CTTAGC
1 CCGGATATAGGAACTCGCACGAA-TGCCTTCGGGACTTAGC
** * * *
36705684 CCGGA-ATTAGTCACTAGCACAAATGCCTTTGGGACTTAGC
1 CCGGATA-TAGGAACTCGCACGAATGCCTTCGGGACTTAGC
36705724 CCGG
1 CCGG
36705728 TTATCATCCG
Statistics
Matches: 140, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 32 0.23
40 107 0.76
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAGGAACTCGCACGAATGCCTTCGGGACTTAGC
Found at i:36705660 original size:80 final size:78
Alignment explanation
Indices: 36705525--36705727 Score: 246
Period size: 80 Copynumber: 2.6 Consensus size: 78
36705515 CGGAATTCAA
** * * * *
36705525 CCGGATATAGCTACTCGCTTGAATGCCTTCGGGACATAGCCTGGTTATAGGAACTCGCACAAATG
1 CCGGATATAG-TACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAAGAACTCGCACAAATG
36705590 CCTTCGGGACTTAGC
65 CCTTCGGG-CTTAGC
* * *
36705605 CCGGATATAGTAACTCGCACGAATGCCTTCCGGACTTAGCCCGGATATAATAACTCGCACAATTG
1 CCGGATATAGT-ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAAGAACTCGCACAAATG
36705670 CCTTCGGGCTTAGC
65 CCTTCGGGCTTAGC
* * *
36705684 CCGGA-ATTAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGG
1 CCGGATA-TAGT-ACTCGCACGAATGCCTTCGGGACTTAGCCCGG
36705728 TTATCATCCG
Statistics
Matches: 107, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 44 0.41
80 62 0.58
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (78 bp):
CCGGATATAGTACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAAGAACTCGCACAAATGC
CTTCGGGCTTAGC
Found at i:36705704 original size:39 final size:40
Alignment explanation
Indices: 36705546--36705727 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
36705536 TACTCGCTTG
* * * *
36705546 AATGCCTTCGGGACATAGCCTGGTTATAGGAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
*
36705586 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
36705626 AATGCCTTCCGGACTTAGCCCGGATATAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
36705666 ATTGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
*
36705705 AATGCCTTTGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
36705728 TTATCATCCG
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.26
40 92 0.74
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:36708676 original size:29 final size:29
Alignment explanation
Indices: 36708652--36708745 Score: 143
Period size: 29 Copynumber: 3.2 Consensus size: 29
36708642 TCGCACACCC
* * *
36708652 AGTGCCGTATTTTTCCAGTATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
36708681 AGTGCCATATATTTCTAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
36708710 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
36708739 AGTGCCA
1 AGTGCCA
36708746 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.32
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:36709214 original size:2 final size:2
Alignment explanation
Indices: 36709201--36709234 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
36709191 CATACTTATG
*
36709201 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
36709235 CACTTCCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:36711799 original size:46 final size:46
Alignment explanation
Indices: 36711746--36711920 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 46
36711736 TGGTATGTGT
36711746 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
*
36711792 GCCAGTGTAAGACATGTCTGGGACATGCATCA---ACATTGAGACGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATT---ATGAGA
* *
36711838 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGACA-TAT-ACAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAG-C-C-ACATTATGA-GA
* * *
36711886 GCTAGTGTAAGACCTGTCTGGGACAAGGCATCAGC
1 GCCAGTGTAAGACATGTCTGGGAC-ATGCATCAGC
36711921 TTGTTGAGTG
Statistics
Matches: 112, Mismatches: 6, Indels: 20
0.81 0.04 0.14
Matches are distributed among these distances:
43 5 0.04
46 68 0.61
47 1 0.01
48 26 0.23
49 8 0.07
51 1 0.01
52 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
Found at i:36711934 original size:92 final size:91
Alignment explanation
Indices: 36711744--36711918 Score: 228
Period size: 92 Copynumber: 1.9 Consensus size: 91
36711734 GGTGGTATGT
* *
36711744 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACATGT
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAAAGCCAGTGTAAGACATGT
*
36711809 CTGGGACATGCATCAACATTGAGACGA
66 CTGGGACAGGCATCAACATT-AGACGA
* *
36711836 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGACA-TAT-ACAAGCTAGTGTAAGAC
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAG-C-C-ACATTATGA-AAGCCAGTGTAAGAC
*
36711899 CTGTCTGGGACAAGGCATCA
62 ATGTCTGGGAC-AGGCATCA
36711919 GCTTGTTGAG
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
92 33 0.46
93 2 0.03
94 27 0.38
95 10 0.14
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (91 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAAAGCCAGTGTAAGACATGT
CTGGGACAGGCATCAACATTAGACGA
Found at i:36728336 original size:40 final size:40
Alignment explanation
Indices: 36728281--36728484 Score: 313
Period size: 40 Copynumber: 5.1 Consensus size: 40
36728271 CGGATGATAA
* * * *
36728281 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
36728321 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36728361 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36728401 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36728441 CCGGGCTAAGTCTCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
36728481 CCGG
1 CCGG
36728485 AAAAATCCTG
Statistics
Matches: 154, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 2 0.01
40 151 0.98
41 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36734649 original size:78 final size:80
Alignment explanation
Indices: 36734554--36734705 Score: 211
Period size: 78 Copynumber: 1.9 Consensus size: 80
36734544 GGTTATAGCG
* * * *
36734554 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
36734616 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
36734632 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
36734697 AGCCCGGAT
66 AGCCCGGAT
36734706 ATCATTCGAA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.53
79 15 0.23
80 12 0.19
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:36734704 original size:40 final size:39
Alignment explanation
Indices: 36734502--36734707 Score: 182
Period size: 40 Copynumber: 5.2 Consensus size: 39
36734492 CGGAATTTAA
* * * **
36734502 CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAGTAACTCGCAC-AATGCCTTCGGGACTTAGC
* ** *
36734542 CCGGTTATAGCGACTCGCACGAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCAC-AATGCCTTCGGGACTTAGC
* * *
36734582 CCGGGTTTAGTAACTTGCACAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGC
* * * *
36734620 CCGGATTTATTAACTCGCACGAATGCCTTC-GGATCCTAGT
1 CCGGATATAGTAACTCGCAC-AATGCCTTCGGGA-CTTAGC
* * *
36734660 CCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAGC
36734700 CCGGATAT
1 CCGGATAT
36734708 CATTCGAATA
Statistics
Matches: 135, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
38 24 0.18
39 21 0.16
40 82 0.61
41 8 0.06
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGC
Found at i:36739102 original size:40 final size:39
Alignment explanation
Indices: 36739058--36739210 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 39
36739048 AAGTGACTAT
* *
36739058 ATCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAA
1 ATCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAA
* * *
36739098 ATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAA
* * *
36739137 ACCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA
1 ATCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-A
** *
36739178 A-CCGGGCTTTGTCCCGAAGGCATTCGAGCGAGT
1 ATCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
36739211 CATTATATCC
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
39 33 0.34
40 63 0.64
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.23
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAA
Found at i:36739158 original size:79 final size:81
Alignment explanation
Indices: 36739019--36739210 Score: 214
Period size: 79 Copynumber: 2.4 Consensus size: 81
36739009 TTGAATGATG
** * * *
36739019 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-CGAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
36739083 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
36739099 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
36739162 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
** * *
36739179 -CCGGGCTTTGTCCCGAAGGCATTCGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
36739211 CATTATATCC
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.59
80 38 0.40
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:36739225 original size:79 final size:77
Alignment explanation
Indices: 36739053--36739235 Score: 188
Period size: 79 Copynumber: 2.3 Consensus size: 77
36739043 GTGTTAAGTG
* *
36739053 ACTATATCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGG
* * *
36739118 CATTTGTGCGAGTT
64 CATTCGAGCGAGTC
* * * **
36739132 ACTAAACCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGCTTTGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AATCCGGGCTAAG-CCCGAA
36739196 GGCATTCGAGCGAGTC
62 GGCATTCGAGCGAGTC
* *
36739212 ATTATATCCGGTTAAATTCCGAAG
1 ACTATATCCGGTT-AAGTCCGAAG
36739236 ATACGTGATT
Statistics
Matches: 85, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
78 1 0.01
79 52 0.61
80 32 0.38
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCA
TTCGAGCGAGTC
Found at i:36742779 original size:40 final size:40
Alignment explanation
Indices: 36742722--36742923 Score: 282
Period size: 40 Copynumber: 5.0 Consensus size: 40
36742712 GATGATAACT
* * * * *
36742722 GGGCTAGGTCCCAAAGGCCTTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
36742762 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
36742802 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
36742842 GGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
36742882 GGGCTAAGTCCCGAATGCATTTGAGTGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
36742922 GG
1 GG
36742924 AAAAATCCCG
Statistics
Matches: 148, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 145 0.98
41 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:36745063 original size:9 final size:9
Alignment explanation
Indices: 36745049--36745076 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
36745039 TAGACCTTCC
36745049 AAAAATGCA
1 AAAAATGCA
36745058 AAAAATGCA
1 AAAAATGCA
36745067 AAAAATGCA
1 AAAAATGCA
36745076 A
1 A
36745077 GTAGTGGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.68, C:0.11, G:0.11, T:0.11
Consensus pattern (9 bp):
AAAAATGCA
Found at i:36745551 original size:25 final size:25
Alignment explanation
Indices: 36745517--36745564 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
36745507 TTTAAGGTGT
36745517 AAGAATAATGAGATAATATGAATAC
1 AAGAATAATGAGATAATATGAATAC
*
36745542 AAGAATAATGAGATAATCTGAAT
1 AAGAATAATGAGATAATATGAAT
36745565 TGAGTCTAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.54, C:0.04, G:0.17, T:0.25
Consensus pattern (25 bp):
AAGAATAATGAGATAATATGAATAC
Found at i:36757160 original size:46 final size:44
Alignment explanation
Indices: 36757109--36757228 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 44
36757099 TATATGTGCC
* * *
36757109 AGTGTAAGACATGTCTGGGACATGCATTGGCCACATT-ATGAGAGCT
1 AGTGTAAAACATGTCTGGGACATGCATCGG---CATTGACGAGAGCT
*
36757155 AGTGTAAAACACGTCTGGGACATGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAAACATGTCTGGGACATGCATCGGCATT--GACGAGAGCT
36757201 AGTGTAAAACATGTCTAGGG-CATGCATC
1 AGTGTAAAACATGTCT-GGGACATGCATC
36757229 AGCCTCGAGA
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
43 4 0.06
46 58 0.89
47 3 0.05
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (44 bp):
AGTGTAAAACATGTCTGGGACATGCATCGGCATTGACGAGAGCT
Found at i:36763896 original size:45 final size:45
Alignment explanation
Indices: 36763846--36763933 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
36763836 AAACATGTAA
36763846 CACATACATCATGAAATCAGACCACAACTCAATGAGTTCAGATGT
1 CACATACATCATGAAATCAGACCACAACTCAATGAGTTCAGATGT
* *
36763891 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
1 CACATACATCATGAAATCAGACCACAACTCAATGAGTTCAGAT
36763934 CACATAATTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.40, C:0.25, G:0.12, T:0.23
Consensus pattern (45 bp):
CACATACATCATGAAATCAGACCACAACTCAATGAGTTCAGATGT
Found at i:36763931 original size:21 final size:21
Alignment explanation
Indices: 36763862--36763937 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 21
36763852 CATCATGAAA
36763862 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* * **
36763883 TCAGATGTCACATATATC-ATGAAC
1 TCAGA--CCACA-A-CTCAATGAGT
36763907 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
*
36763928 TCAGATCACA
1 TCAGACCACA
36763938 TAATTCCTAT
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
20 2 0.05
21 19 0.46
22 4 0.10
23 4 0.10
24 10 0.24
25 2 0.05
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.22
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:36765708 original size:31 final size:31
Alignment explanation
Indices: 36765671--36765865 Score: 126
Period size: 31 Copynumber: 6.5 Consensus size: 31
36765661 TAAAAATGAA
*
36765671 AATCAAAATCAGAATCAAAATCAGGTGACAG
1 AATCAAAATCAGAATCAAAATCAGGTAACAG
* *
36765702 AATCAAAATCAGAATCAGAATCA-G-AATTAGG
1 AATCAAAATCAGAATCAAAATCAGGTAA-CA-G
* *
36765733 TAA-CAGAATCAGAATCAATATCAGGTAACAG
1 -AATCAAAATCAGAATCAAAATCAGGTAACAG
* * * *
36765764 AATCAGAATCAGAACCAGAATCA-G-AATTAGG
1 AATCAAAATCAGAATCAAAATCAGGTAA-CA-G
* * *
36765795 TAA-CAGAATCAGAATTAGAATCAGGTAACAG
1 -AATCAAAATCAGAATCAAAATCAGGTAACAG
*
36765826 AATCAGAATCAG--T----ATCAGGTAACAG
1 AATCAAAATCAGAATCAAAATCAGGTAACAG
*
36765851 AATCAGAATCAGAAT
1 AATCAAAATCAGAAT
36765866 GTGAATGCAA
Statistics
Matches: 136, Mismatches: 14, Indels: 32
0.75 0.08 0.18
Matches are distributed among these distances:
25 24 0.18
27 1 0.01
29 4 0.03
30 8 0.06
31 87 0.64
32 8 0.06
33 4 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.18
Consensus pattern (31 bp):
AATCAAAATCAGAATCAAAATCAGGTAACAG
Found at i:36765717 original size:6 final size:6
Alignment explanation
Indices: 36765671--36765865 Score: 143
Period size: 6 Copynumber: 31.5 Consensus size: 6
36765661 TAAAAATGAA
* * * *
36765671 AATCAA AATCAG AATCAA AATCAG -GTGACAG AATCAA AATCAG AATCAG
1 AATCAG AATCAG AATCAG AATCAG AAT--CAG AATCAG AATCAG AATCAG
*
36765720 AATCAG AATTAGG TAA-CAG AATCAG AATCA- ATATCAGG TAA-CAG AATCAG
1 AATCAG AATCA-G -AATCAG AATCAG AATCAG A-ATCA-G -AATCAG AATCAG
* * *
36765770 AATCAG AACCAG AATCAG AATTAGG TAA-CAG AATCAG AATTAG AATCAGG
1 AATCAG AATCAG AATCAG AATCA-G -AATCAG AATCAG AATCAG AATCA-G
*
36765820 TAA-CAG AATCAG AATCAG TATCAGG TAA-CAG AATCAG AATCAG AAT
1 -AATCAG AATCAG AATCAG AATCA-G -AATCAG AATCAG AATCAG AAT
36765866 GTGAATGCAA
Statistics
Matches: 152, Mismatches: 17, Indels: 40
0.73 0.08 0.19
Matches are distributed among these distances:
5 12 0.08
6 115 0.76
7 15 0.10
8 9 0.06
9 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
AATCAG
Found at i:36765719 original size:37 final size:37
Alignment explanation
Indices: 36765669--36765756 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 37
36765659 AATAAAAATG
*
36765669 AAAATCAAAATCAGAATCAAAATCAGGTGACAGAATC
1 AAAATCAAAATCAGAATCAAAATCAGGTAACAGAATC
* * *
36765706 AAAATCAGAATCAGAATCAGAATTAGGTAACAGAATC
1 AAAATCAAAATCAGAATCAAAATCAGGTAACAGAATC
* *
36765743 AGAATCAATATCAG
1 AAAATCAAAATCAG
36765757 GTAACAGAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.18
Consensus pattern (37 bp):
AAAATCAAAATCAGAATCAAAATCAGGTAACAGAATC
Found at i:36765750 original size:62 final size:62
Alignment explanation
Indices: 36765677--36765843 Score: 271
Period size: 62 Copynumber: 2.7 Consensus size: 62
36765667 TGAAAATCAA
* *
36765677 AATCAGAATCAAAATCAGGTGACAGAATCAAAATCAGAATCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAAAATCAGGTAACAGAATCAGAATCAGAATCAGAATCAGAATTAGGTAACAG
* *
36765739 AATCAGAATCAATATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAAAATCAGGTAACAGAATCAGAATCAGAATCAGAATCAGAATTAGGTAACAG
* * *
36765801 AATCAGAATTAGAATCAGGTAACAGAATCAGAATCAGTATCAG
1 AATCAGAATCAAAATCAGGTAACAGAATCAGAATCAGAATCAG
36765844 GTAACAGAAT
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 96 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (62 bp):
AATCAGAATCAAAATCAGGTAACAGAATCAGAATCAGAATCAGAATCAGAATTAGGTAACAG
Found at i:36765777 original size:37 final size:37
Alignment explanation
Indices: 36765700--36765865 Score: 141
Period size: 37 Copynumber: 4.5 Consensus size: 37
36765690 ATCAGGTGAC
* *
36765700 AGAATCAAAATCAGAATCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTAAC
36765737 AGAATCAGAATCA-ATATCAGGTAA-CAGAATCA-G-AATC
1 AGAATCAGAATCAGA-ATCA-G-AATCAGAATCAGGTAA-C
* * *
36765774 AGAACCAGAATCAGAATTAGGTAA-CAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCA-G-AATCAGAATCAGGTAA-C
*
36765811 AGAATCAGGTAA-CAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCA-G-AATCAGAATCAGAATCAGAATCAGGTAAC
36765849 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
36765866 GTGAATGCAA
Statistics
Matches: 109, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
36 7 0.06
37 71 0.65
38 25 0.23
39 6 0.06
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:36765807 original size:25 final size:25
Alignment explanation
Indices: 36765677--36765865 Score: 171
Period size: 25 Copynumber: 7.6 Consensus size: 25
36765667 TGAAAATCAA
* *
36765677 AATCAGAATCAAAATCAGGTGACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
36765702 AATCAAAATCAGAATCA-G-AATCAG
1 AATCAGAATCAGAATCAGGTAA-CAG
*
36765726 AATTAGGTAA-CAGAATCA-G-AATCA-
1 AATCA-G-AATCAGAATCAGGTAA-CAG
36765750 ATATCAGGTAA-CAGAATCA-G-AATCAG
1 A-ATCA-G-AATCAGAATCAGGTAA-CAG
* *
36765776 AACCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
36765801 AATCAGAATTAGAATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
36765826 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
36765851 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
36765866 GTGAATGCAA
Statistics
Matches: 142, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
23 3 0.02
24 17 0.12
25 117 0.82
26 5 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:36765854 original size:19 final size:19
Alignment explanation
Indices: 36765680--36765837 Score: 117
Period size: 19 Copynumber: 7.8 Consensus size: 19
36765670 AAATCAAAAT
* *
36765680 CAGAATCAAAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
*
36765699 CAGAATCAAAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
36765716 TCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
36765736 CAGAATCAGAATCAATATCAGGTAA
1 CAGAATCAG-----A-ATCAGGTAA
36765761 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
36765778 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
36765798 CAGAATCAGAATTAGAATCAGGTAA
1 CAGAATC------AGAATCAGGTAA
36765823 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
36765838 TATCAGGTAA
Statistics
Matches: 115, Mismatches: 6, Indels: 36
0.73 0.04 0.23
Matches are distributed among these distances:
17 3 0.03
18 27 0.23
19 44 0.38
20 5 0.04
24 1 0.01
25 35 0.30
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:36766310 original size:27 final size:27
Alignment explanation
Indices: 36766280--36766423 Score: 161
Period size: 27 Copynumber: 5.3 Consensus size: 27
36766270 GGGGTAAAAT
36766280 GGTAATTTTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* **
36766307 GGTAATTCTACTTTAC-AGGAGTATTTC
1 GGTAATTTTACCCTACAAGG-GTATTTC
* * *
36766334 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
36766361 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
36766388 -G-ACATTTCTACCCTACAAGGGTATTTC
1 GGTA-ATTT-TACCCTACAAGGGTATTTC
36766415 GGTAATTTT
1 GGTAATTTT
36766424 GTAAATCGAG
Statistics
Matches: 98, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
26 6 0.06
27 84 0.86
28 7 0.07
29 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:36766340 original size:54 final size:53
Alignment explanation
Indices: 36766281--36766421 Score: 178
Period size: 54 Copynumber: 2.6 Consensus size: 53
36766271 GGGTAAAATG
**
36766281 GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACTTTAC-AGGAGTATTTC
1 GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTC
* * * *
36766334 AGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTC
1 -GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
36766388 G-ACATTTCTACCCTACAAGGGTATTTCGGTAATT
1 GTA-ATTT-TACCCTACAAGGGTATTTCGGTAATT
36766422 TTGTAAATCG
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
52 1 0.01
53 4 0.05
54 66 0.89
55 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (53 bp):
GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
Found at i:36766501 original size:27 final size:27
Alignment explanation
Indices: 36766471--36766535 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
36766461 GGTACTTTGG
*
36766471 TAATTTTACAAGTTGAGTGTATTTCAA
1 TAATTTTACAAGTCGAGTGTATTTCAA
* *
36766498 TAATTTTACAGGTCGAGTGTATTTCAG
1 TAATTTTACAAGTCGAGTGTATTTCAA
*
36766525 TAATTTCACAA
1 TAATTTTACAA
36766536 ATCAGGGGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGTGTATTTCAA
Found at i:36766627 original size:54 final size:54
Alignment explanation
Indices: 36766516--36766995 Score: 705
Period size: 54 Copynumber: 8.9 Consensus size: 54
36766506 CAGGTCGAGT
* * * * *
36766516 GTATTTCAGTAATTTCACAAA-TCAGGGGT-TTTTGGTAATTTTACAAACTAGGG
1 GTATTTTAGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTATAAACCAAGG
*
36766569 GTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGG
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGG
* *
36766623 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAATG
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGG
* * *
36766677 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGG
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGG
* *
36766731 GTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGG
* * * * *
36766785 GTATTTTGGTAATTTTATAAACCAGGGTTATTTTGGTGATTTTATAAACCAAGG
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGG
* *
36766839 GTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGG
* *
36766893 GTATTTTGGTAATTTTACAAA-TCAGGGGTATTTTGGTGATTTTATAAACCAAGG
1 GTATTTTAGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTATAAACCAAGG
* *
36766947 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGATAAAC
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAC
36766996 TAAAGTATTC
Statistics
Matches: 382, Mismatches: 41, Indels: 7
0.89 0.10 0.02
Matches are distributed among these distances:
53 25 0.07
54 357 0.93
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGG
Found at i:36766995 original size:27 final size:27
Alignment explanation
Indices: 36766524--36766988 Score: 590
Period size: 27 Copynumber: 17.3 Consensus size: 27
36766514 GTGTATTTCA
* *
36766524 GTAATTTCACAAATCAGGGGT-TTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
36766550 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
36766577 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* * *
36766604 GTAATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTG
*
36766631 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
** **
36766658 GTAATTTTGTAAACCAATGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
36766685 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* * * * *
36766712 GTGATTTTATAAACCAAGGGTATTCTA
1 GTAATTTTACAAACCAGGGGTATTTTG
*
36766739 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
** *
36766766 GTAATTTTGTAAACCAAGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* *
36766793 GTAATTTTATAAACCAGGGTTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* * * * *
36766820 GTGATTTTATAAACCAAGGGTATTCTA
1 GTAATTTTACAAACCAGGGGTATTTTG
*
36766847 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
** *
36766874 GTAATTTTGTAAACCAAGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
36766901 GTAATTTTACAAATCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* * * *
36766928 GTGATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTG
36766955 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
36766982 GTAATTT
1 GTAATTT
36766989 GATAAACTAA
Statistics
Matches: 372, Mismatches: 66, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
26 18 0.05
27 354 0.95
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACCAGGGGTATTTTG
Found at i:36766995 original size:108 final size:108
Alignment explanation
Indices: 36766516--36766988 Score: 788
Period size: 108 Copynumber: 4.4 Consensus size: 108
36766506 CAGGTCGAGT
* * ** * *
36766516 GTATTTCAGTAATTTCACAAA-TCAGGGGT-TTTTGGTAATTTTACAAACTAGGGGTATTTTGGT
1 GTATTTTAGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGT
* *
36766579 AATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGG
65 AATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGG
*
36766623 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGTA
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTA
36766688 ATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGG
66 ATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGG
*
36766731 GTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTA
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTA
* *
36766796 ATTTTATAAACCAGGGTTATTTTGGTGATTTTATAAACCAAGG
66 ATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGG
*
36766839 GTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTA
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTA
*
36766904 ATTTTACAAATCAGGGGTATTTTGGTGATTTTATAAACCAAGG
66 ATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGG
*
36766947 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTT
36766989 GATAAACTAA
Statistics
Matches: 346, Mismatches: 18, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
107 25 0.07
108 321 0.93
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (108 bp):
GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTA
ATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGG
Found at i:36787028 original size:34 final size:34
Alignment explanation
Indices: 36786985--36787073 Score: 124
Period size: 34 Copynumber: 2.6 Consensus size: 34
36786975 TGTACTGAAT
*
36786985 TGGGCTAAGGCCCACATTGATATTGCTATTGATA
1 TGGGCTAAGGCCCACACTGATATTGCTATTGATA
*
36787019 TGGGCTAAGGCCCACACTGATATTTCTATTGATA
1 TGGGCTAAGGCCCACACTGATATTGCTATTGATA
* * * *
36787053 AGAGCTTAGGCCCAGACTGAT
1 TGGGCTAAGGCCCACACTGAT
36787074 CAACAATGCA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (34 bp):
TGGGCTAAGGCCCACACTGATATTGCTATTGATA
Found at i:36799265 original size:20 final size:20
Alignment explanation
Indices: 36799240--36799279 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
36799230 CACATTTTCA
36799240 AATGTCAGAAGTCATCACAC
1 AATGTCAGAAGTCATCACAC
*
36799260 AATGTCAGAGGTCATCACAC
1 AATGTCAGAAGTCATCACAC
36799280 TATCACAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (20 bp):
AATGTCAGAAGTCATCACAC
Found at i:36810939 original size:40 final size:39
Alignment explanation
Indices: 36810902--36811087 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 39
36810892 GCTACTCGTT
*
36810902 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCG-GACTTAGCCCGGATT-TAGTAACTCGCA
* * *
36810942 CCAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
* *
36810982 CAAATGCCTTCGGATCTTAGTCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
36811022 CAAATGCCTTCGGATCTTAGTCCGAATATAATCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
36811063 CAAA-GCCTTCGGGACTTAGCTCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
36811088 CATCATTCGA
Statistics
Matches: 124, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 3 0.02
40 107 0.86
41 14 0.11
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36811017 original size:80 final size:79
Alignment explanation
Indices: 36810869--36811040 Score: 206
Period size: 80 Copynumber: 2.2 Consensus size: 79
36810859 GAATCACGTA
* *
36810869 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGAGACATAGCCCGGTTATAGT
1 CCTTCGGAACTTAACCGGATATAGCTACTCGTACAAATGCCTTCGAGACATAGCCCGGTTATAGT
*
36810934 AACTCGCACCAATG
66 AACTCGCACAAATG
* * * *
36810948 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGTACAAATGCCTTCG-GATCTTAGTCCGGATT-
1 CCTTCGGAACTTAA-CCGGATATAGCT-ACTCGTACAAATGCCTTCGAGA-CATAGCCCGG-TTA
*
36811010 TATTAACTCGCACAAATG
62 TAGTAACTCGCACAAATG
*
36811028 CCTTCGGATCTTA
1 CCTTCGGAACTTA
36811041 GTCCGAATAT
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
79 15 0.19
80 62 0.78
81 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (79 bp):
CCTTCGGAACTTAACCGGATATAGCTACTCGTACAAATGCCTTCGAGACATAGCCCGGTTATAGT
AACTCGCACAAATG
Found at i:36813929 original size:27 final size:27
Alignment explanation
Indices: 36813899--36814068 Score: 81
Period size: 27 Copynumber: 6.3 Consensus size: 27
36813889 CGACTTGTAA
*
36813899 AATTACCAAAGTACTCTCAATTTACAG
1 AATTACCAAAGTACCCTCAATTTACAG
****
36813926 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAGTACCCTCAATTTACAG
** *** * *
36813953 AATTATTATTTTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCAATTTACAG
**** *
36813980 AATTACCGTTTTACCC-CTAATTTACAT
1 AATTACCAAAGTACCCTC-AATTTACAG
*** * *
36814007 AATTACCATTTTACCCCCGATTTACAG
1 AATTACCAAAGTACCCTCAATTTACAG
**** *
36814034 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCAATTTACAG
36814061 AATTACCA
1 AATTACCA
36814069 TTTTACCCTT
Statistics
Matches: 119, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 117 0.98
28 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCAATTTACAG
Found at i:36814011 original size:81 final size:81
Alignment explanation
Indices: 36813917--36814147 Score: 327
Period size: 81 Copynumber: 2.9 Consensus size: 81
36813907 AAGTACTCTC
* * * * *
36813917 AATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTATTATTTTACCCTCGATTTATAGAA
1 AATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAA
*
36813982 TTACCGTTTTACCCCT
66 TTACCATTTTACCCCT
* * *
36813998 AATTTACATAATTACCATTTTACCCCCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAA
1 AATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAA
*
36814063 TTACCATTTTACCCTT
66 TTACCATTTTACCCCT
* * * * *
36814079 GATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAA
1 AATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAA
36814144 TTAC
66 TTAC
36814148 TAAAATACCC
Statistics
Matches: 132, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 132 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.40
Consensus pattern (81 bp):
AATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAA
TTACCATTTTACCCCT
Found at i:36814148 original size:27 final size:27
Alignment explanation
Indices: 36813918--36814147 Score: 291
Period size: 27 Copynumber: 8.5 Consensus size: 27
36813908 AGTACTCTCA
* *
36813918 ATTTACAGAATTACCGTTTTACCCTCA
1 ATTTACAGAATTACCATTTTACCCTCG
**
36813945 ATTTACAGAATTATTATTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCG
* * *
36813972 ATTTATAGAATTACCGTTTTACCC-CTA
1 ATTTACAGAATTACCATTTTACCCTC-G
* *
36813999 ATTTACATAATTACCATTTTACCCCCG
1 ATTTACAGAATTACCATTTTACCCTCG
*
36814026 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCG
*
36814053 ATTTACAGAATTACCATTTTACCCTTG
1 ATTTACAGAATTACCATTTTACCCTCG
* * *
36814080 ATTTATAGAATTACTATTTTACCCTTG
1 ATTTACAGAATTACCATTTTACCCTCG
**
36814107 ATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAGAATTACCATTTTACCCTCG
*
36814134 ATTTACAAAATTAC
1 ATTTACAGAATTAC
36814148 TAAAATACCC
Statistics
Matches: 177, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 175 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
ATTTACAGAATTACCATTTTACCCTCG
Found at i:36814174 original size:81 final size:81
Alignment explanation
Indices: 36813897--36814160 Score: 258
Period size: 81 Copynumber: 3.3 Consensus size: 81
36813887 CTCGACTTGT
* * ** * * * * ***
36813897 AAAATTACCAAAGTACTCTCAATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTATTAT
1 AAAATTACCAAAATACCCTTGATTTATAGAATTACCATTTTACCCCCGATTTACAGAATTACCGT
*
36813962 TTTACCCTCGATTTAT
66 TTTACCCTCGATTTAC
* **** * * * *
36813978 AGAATTACCGTTTTACCCCTAATTTACATAATTACCATTTTACCCCCGATTTACAGAATTACCGT
1 AAAATTACCAAAATACCCTTGATTTATAGAATTACCATTTTACCCCCGATTTACAGAATTACCGT
36814043 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* *** * ** *
36814059 AGAATTACCATTTTACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGT
1 AAAATTACCAAAATACCCTTGATTTATAGAATTACCATTTTACCCCCGATTTACAGAATTACCGT
36814124 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
*
36814140 AAAATTACTAAAATACCCTTG
1 AAAATTACCAAAATACCCTTG
36814161 GTTTGTGAAA
Statistics
Matches: 153, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 153 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGATTTATAGAATTACCATTTTACCCCCGATTTACAGAATTACCGT
TTTACCCTCGATTTAC
Found at i:36814184 original size:81 final size:81
Alignment explanation
Indices: 36814025--36814185 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 81
36814015 TTTTACCCCC
* ***
36814025 GATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTATAGAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATAGAA
* ***
36814090 TTACTATTTTACCCTT
66 TTACCACAATACCCTT
* * * *
36814106 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGT-GAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATAG-A
*
36814170 ATTACCGCAATACCCT
65 ATTACCACAATACCCT
36814186 CAATTTGTAA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
80 1 0.02
81 65 0.98
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (81 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATAGAA
TTACCACAATACCCTT
Found at i:36815416 original size:25 final size:25
Alignment explanation
Indices: 36815387--36815434 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36815377 TTATACCATG
* * *
36815387 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
36815412 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
36815435 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:36815537 original size:20 final size:20
Alignment explanation
Indices: 36815477--36815537 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
36815467 ATAAATATGG
*
36815477 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
36815497 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
36815517 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
36815537 T
1 T
36815538 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:36815614 original size:24 final size:24
Alignment explanation
Indices: 36815587--36815715 Score: 206
Period size: 24 Copynumber: 5.4 Consensus size: 24
36815577 GAGGAAGTGA
36815587 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
36815611 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
36815635 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
36815658 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
36815682 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
36815706 AAAAGAGGCT
1 AAAAG-GGCT
36815716 AGGCCTCCAG
Statistics
Matches: 100, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
23 23 0.23
24 73 0.73
25 4 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:36815680 original size:47 final size:47
Alignment explanation
Indices: 36815587--36815715 Score: 204
Period size: 47 Copynumber: 2.7 Consensus size: 47
36815577 GAGGAAGTGA
36815587 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
36815635 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* *
36815682 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCT
36815716 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
47 43 0.57
48 29 0.38
49 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:36815956 original size:31 final size:31
Alignment explanation
Indices: 36815921--36816015 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
36815911 CGTTTACAGT
36815921 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
36815952 AAAGGCATCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
36815983 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36816014 AA
1 AA
36816016 TATGAAAAAG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36823993 original size:13 final size:13
Alignment explanation
Indices: 36823970--36823996 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36823960 AAGAAATCAT
36823970 TTCATAAAATTTC
1 TTCATAAAATTTC
36823983 TTCATAAAATTTC
1 TTCATAAAATTTC
36823996 T
1 T
36823997 AGAGATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.00, T:0.48
Consensus pattern (13 bp):
TTCATAAAATTTC
Found at i:36826359 original size:42 final size:42
Alignment explanation
Indices: 36826300--36826451 Score: 123
Period size: 42 Copynumber: 3.5 Consensus size: 42
36826290 TTTTATCAAA
* *
36826300 TCACCCGCA-TTCAGCCTGCTAGGTTTAAAAACCCGAAT-TCAT
1 TCACCGGCATTTC-GCCTGCTAGG-TTAAAAGCCCGAATATCAT
* **
36826342 TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCG-ATATCATT
1 TCACCGGCATTTCGCCTGCTAGGTTAAAAGCCCGAATATCA-T
* * * *
36826384 TCACCGGCATTATAGCCTGCTAGGCTTGAAAGCTCTAATAGT-AT
1 TCACCGGCATT-TCGCCTGCTAGG-TTAAAAGCCCGAATA-TCAT
*
36826428 CTCACCGACATTTCGCCTGCTAGG
1 -TCACCGGCATTTCGCCTGCTAGG
36826452 CTCGAAGCCT
Statistics
Matches: 89, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
40 2 0.02
41 10 0.11
42 30 0.34
43 14 0.16
44 18 0.20
45 14 0.16
46 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (42 bp):
TCACCGGCATTTCGCCTGCTAGGTTAAAAGCCCGAATATCAT
Found at i:36826409 original size:43 final size:42
Alignment explanation
Indices: 36826341--36826516 Score: 174
Period size: 43 Copynumber: 4.0 Consensus size: 42
36826331 CCCGAATTCA
* *
36826341 TTCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCGATA-TCAT
1 TTCACCGACATTTAGCCTGCTAGGCTCGAAGCCCGATAGT-AT
* * **
36826383 TTCACCGGCATTATAGCCTGCTAGGCTTGAAAGCTCTAATAGTAT
1 TTCACCGACATT-TAGCCTGCTAGGCTCG-AAGC-CCGATAGTAT
* * *
36826428 CTCACCGACATTTCGCCTGCTAGGCTCGAAGCCTGAATAGTAT
1 TTCACCGACATTTAGCCTGCTAGGCTCGAAGCCCG-ATAGTAT
* *
36826471 TTCACCGACATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTAT
1 TTCACCGACATT-TAGCCTGCTAGGCTCGAA-GCCCG-ATAGTAT
36826516 T
1 T
36826517 GAGCGATATT
Statistics
Matches: 113, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
42 14 0.12
43 36 0.32
44 33 0.29
45 29 0.26
46 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (42 bp):
TTCACCGACATTTAGCCTGCTAGGCTCGAAGCCCGATAGTAT
Found at i:36826512 original size:88 final size:87
Alignment explanation
Indices: 36826342--36826515 Score: 244
Period size: 88 Copynumber: 2.0 Consensus size: 87
36826332 CCGAATTCAT
* * *
36826342 TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCGATATCATTTCACCGGCATTATAGCCTGCTAG
1 TCACCGACATTTCGCCTGCTAGGCTCGAAGCCCGATATCATTTCACCGACATTATAGCCTACTAG
* * *
36826407 GCTTGAAAGCTCTAATAGTATC
66 GCTTCAAAGCCCGAATAGTATC
*
36826429 TCACCGACATTTCGCCTGCTAGGCTCGAAGCCTGAATAGT-ATTTCACCGACATTATAGCCTACT
1 TCACCGACATTTCGCCTGCTAGGCTCGAAGCCCG-ATA-TCATTTCACCGACATTATAGCCTACT
36826493 AGGC-TCAAAGGCCCGAATAGTAT
64 AGGCTTCAAA-GCCCGAATAGTAT
36826516 TGAGCGATAT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
87 36 0.47
88 40 0.52
89 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (87 bp):
TCACCGACATTTCGCCTGCTAGGCTCGAAGCCCGATATCATTTCACCGACATTATAGCCTACTAG
GCTTCAAAGCCCGAATAGTATC
Found at i:36827369 original size:47 final size:46
Alignment explanation
Indices: 36827314--36827455 Score: 230
Period size: 47 Copynumber: 3.0 Consensus size: 46
36827304 AAAATTTTTT
* *
36827314 TTAACTAAGTAACTTATCCGGAAATAATAAGGGAAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAG-AAATTTAACAAGC
*
36827361 TTAACTAAGTAACTTATCCAGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAG-AAATTTAACAAGC
*
36827408 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGAAATTTAACAAGC
36827454 TT
1 TT
36827456 TAAATTCAAC
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 14 0.16
47 75 0.84
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.28
Consensus pattern (46 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGAGAAATTTAACAAGC
Found at i:36828657 original size:316 final size:316
Alignment explanation
Indices: 36828084--36828717 Score: 1232
Period size: 316 Copynumber: 2.0 Consensus size: 316
36828074 TTTATCACCA
36828084 TCATTATGGCCGGCCACTATACATTAAAGTGGGAATTTTGACACGCAAATCCACCTATTTTACAC
1 TCATTATGGCCGGCCACTATACATTAAAGTGGGAATTTTGACACGCAAATCCACCTATTTTACAC
36828149 CATAAAATTATTTGGCCACTACAAAATAACCTATAGCATTTTCAAAAATTTTCACATAAGTCCTA
66 CATAAAATTATTTGGCCACTACAAAATAACCTATAGCATTTTCAAAAATTTTCACATAAGTCCTA
*
36828214 TTTAATAATTTCACATACAATTGAAAGGATCAAAGCATAAAATTTTCACACATGCACTTTCACAT
131 TTTAATAATTTCACATACAATTGAAAAGATCAAAGCATAAAATTTTCACACATGCACTTTCACAT
36828279 ATAATAAACACAGAACATAACATTTAATTATTTTTGTGACTCGGTTTTGTGGTCCCGAAACCACT
196 ATAATAAACACAGAACATAACATTTAATTATTTTTGTGACTCGGTTTTGTGGTCCCGAAACCACT
*
36828344 TTCCGACTAGGGTCAAATTAGGGCTGTCACATCTATCAAGTCCAATTAGGAAGATG
261 TTCCGACTAGGGTCAAACTAGGGCTGTCACATCTATCAAGTCCAATTAGGAAGATG
*
36828400 TCATTATGGCCGGCCACTATACATTAAAGTGGGAATTTTGACATGCAAATCCACCTATTTTACAC
1 TCATTATGGCCGGCCACTATACATTAAAGTGGGAATTTTGACACGCAAATCCACCTATTTTACAC
36828465 CATAAAATTATTTGGCCACTACAAAATAACCTATAGCATTTTCAAAAATTTTCACATAAGTCCTA
66 CATAAAATTATTTGGCCACTACAAAATAACCTATAGCATTTTCAAAAATTTTCACATAAGTCCTA
*
36828530 TTTAATAATTTCACATACAATTGAAAAGATCAAAGCATGAAATTTTCACACATGCACTTTCACAT
131 TTTAATAATTTCACATACAATTGAAAAGATCAAAGCATAAAATTTTCACACATGCACTTTCACAT
36828595 ATAATAAACACAGAACATAACATTTAATTATTTTTGTGACTCGGTTTTGTGGTCCCGAAACCACT
196 ATAATAAACACAGAACATAACATTTAATTATTTTTGTGACTCGGTTTTGTGGTCCCGAAACCACT
36828660 TTCCGACTAGGGTCAAACTAGGGCTGTCACATCTATCAAGTCCAATTAGGAAGATG
261 TTCCGACTAGGGTCAAACTAGGGCTGTCACATCTATCAAGTCCAATTAGGAAGATG
36828716 TC
1 TC
36828718 TTGTCTTGGG
Statistics
Matches: 314, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
316 314 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (316 bp):
TCATTATGGCCGGCCACTATACATTAAAGTGGGAATTTTGACACGCAAATCCACCTATTTTACAC
CATAAAATTATTTGGCCACTACAAAATAACCTATAGCATTTTCAAAAATTTTCACATAAGTCCTA
TTTAATAATTTCACATACAATTGAAAAGATCAAAGCATAAAATTTTCACACATGCACTTTCACAT
ATAATAAACACAGAACATAACATTTAATTATTTTTGTGACTCGGTTTTGTGGTCCCGAAACCACT
TTCCGACTAGGGTCAAACTAGGGCTGTCACATCTATCAAGTCCAATTAGGAAGATG
Found at i:36829814 original size:26 final size:26
Alignment explanation
Indices: 36829743--36829818 Score: 84
Period size: 26 Copynumber: 2.9 Consensus size: 26
36829733 ACATATCTTC
* *
36829743 TCAAAA-TTTTCCAAGAGGAAAAATCG
1 TCAAAATTTTTCTAAG-GGTAAAATCG
* *
36829769 TCAAAATTTTACTATA-GGTAAAATTG
1 TCAAAATTTTTCTA-AGGGTAAAATCG
36829795 TCAAAATTTTTCTAAGGGTAAAAT
1 TCAAAATTTTTCTAAGGGTAAAAT
36829819 AAGGATGAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
25 1 0.02
26 35 0.83
27 5 0.12
28 1 0.02
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTTCTAAGGGTAAAATCG
Found at i:36836102 original size:25 final size:25
Alignment explanation
Indices: 36836068--36836117 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
36836058 ATTATGATTT
36836068 ATTTTATTTAAACTTTTTAAAAATA
1 ATTTTATTTAAACTTTTTAAAAATA
*
36836093 ATTTTATTTAAACTTTTTAGAAATA
1 ATTTTATTTAAACTTTTTAAAAATA
36836118 GGTTATGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (25 bp):
ATTTTATTTAAACTTTTTAAAAATA
Found at i:36836123 original size:24 final size:25
Alignment explanation
Indices: 36836071--36836123 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
36836061 ATGATTTATT
**
36836071 TTATTTAAACTTTTTAAAAATAATT
1 TTATTTAAACTTTTTAAAAATAAGG
*
36836096 TTATTTAAACTTTTTAGAAAT-AGG
1 TTATTTAAACTTTTTAAAAATAAGG
36836120 TTAT
1 TTAT
36836124 GTATGTACCG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.51
Consensus pattern (25 bp):
TTATTTAAACTTTTTAAAAATAAGG
Found at i:36837849 original size:44 final size:45
Alignment explanation
Indices: 36837796--36838015 Score: 178
Period size: 47 Copynumber: 4.8 Consensus size: 45
36837786 ATATGCATAT
* *
36837796 TGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-TAAC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCTGTAGC
* ** *
36837840 TGATGCATGTCCCAGCCACATCTTACACTAGC-TATCTCTGTCGAGGC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCTGT--A-GC
** * *
36837887 CAATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGT-GC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCA--CATCTCTGTAGC
* * *
36837933 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATAATGTGGC
1 TGATG-CATGTCCCAGACAT-GTCTTACACTAGCACATC-T-CTGTAGC
** * *
36837981 CAAAGCATGTCCCAGACATGTCTTACACTGGCACA
1 TGATGCATGTCCCAGACATGTCTTACACTAGCACA
36838016 CGAATCACCT
Statistics
Matches: 138, Mismatches: 25, Indels: 23
0.74 0.13 0.12
Matches are distributed among these distances:
43 5 0.04
44 30 0.22
45 2 0.01
46 21 0.15
47 57 0.41
48 15 0.11
50 8 0.06
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
TGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCTGTAGC
Found at i:36837992 original size:94 final size:92
Alignment explanation
Indices: 36837747--36838014 Score: 264
Period size: 94 Copynumber: 2.9 Consensus size: 92
36837737 ATATATTACC
* *
36837747 GATGCCATGTCCCAGAAATGGTCTTACACTCA-CTCTCATATAT-G-CATATTGATGCATGTCCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCATATGTGGCCA-A---A-GCATGTCCC
*
36837809 AGACATGTCTTACACTAGCA-CAACTCTTAACT
60 AGACATGTCTTACACTGGCACCAACTCTTAACT
* ** * * *
36837841 GATG-CATGTCCCAGCCA-CATCTTACACTAGCTATCTC-TGTCGAGGCCAATGCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC--TCTCATAT-GTGGCCAAAGCATGTCCCAGA
* * *
36837903 CATGTCTTACTCTGGCACTCATCTCTGT-GCT
63 CATGTCTTACACTGGCAC-CAACTCT-TAACT
36837934 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCAAAGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATGTGGCCAAAGCATGTCCCAGACA
36837999 TGTCTTACACTGGCAC
65 TGTCTTACACTGGCAC
36838015 ACGAATCACC
Statistics
Matches: 142, Mismatches: 19, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
91 28 0.20
92 10 0.07
93 29 0.20
94 58 0.41
95 15 0.11
96 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (92 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATGTGGCCAAAGCATGTCCCAGACAT
GTCTTACACTGGCACCAACTCTTAACT
Found at i:36838888 original size:20 final size:20
Alignment explanation
Indices: 36838863--36838903 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
36838853 AAATGATAGC
36838863 TAGGCTTTTAGGCATTATTT
1 TAGGCTTTTAGGCATTATTT
*
36838883 TAGGCTTTTGGGCATTATTT
1 TAGGCTTTTAGGCATTATTT
36838903 T
1 T
36838904 TCTATCTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.10, G:0.22, T:0.51
Consensus pattern (20 bp):
TAGGCTTTTAGGCATTATTT
Found at i:36841595 original size:49 final size:49
Alignment explanation
Indices: 36841523--36841621 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
36841513 GATCGAAGAG
36841523 ATCAACAATCCTCGACAAGGGATACTTGTTCTTCACTGTCACCTTGTTA
1 ATCAACAATCCTCGACAAGGGATACTTGTTCTTCACTGTCACCTTGTTA
36841572 ATCAACAATCCTCGACAAGGGATACTTGTTCTTCACTGTCACCTTGTTA
1 ATCAACAATCCTCGACAAGGGATACTTGTTCTTCACTGTCACCTTGTTA
36841621 A
1 A
36841622 GCTGTCTGTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.32
Consensus pattern (49 bp):
ATCAACAATCCTCGACAAGGGATACTTGTTCTTCACTGTCACCTTGTTA
Found at i:36842090 original size:221 final size:221
Alignment explanation
Indices: 36841814--36842705 Score: 1687
Period size: 221 Copynumber: 4.0 Consensus size: 221
36841804 GTACCAGGAG
*
36841814 CCAACTCGATACCAAACTCAACCTTTCTTTCTAGGGCTAACCCTGGTAACTCCTCCAGAAAGACG
1 CCAACTCGATACCAAACTCAACCTTTCTTTCTAGGGGTAACCCTGGTAACTCCTCCAGAAAGACG
36841879 TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACACTTGGGTATTCAGCAC
66 TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACACTTGGGTATTCAGCAC
36841944 AAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
131 AAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
*
36842009 CAGACAAGTTATCTGACTCATCTAGC
196 CAGACAAGTTATCTGACTCATCTGGC
* *
36842035 CCAACTCGATACCAAACTCAACCTTTCTTTCTGGGGGTAACCCTGGTAACTCCTCCAGAAAGATG
1 CCAACTCGATACCAAACTCAACCTTTCTTTCTAGGGGTAACCCTGGTAACTCCTCCAGAAAGACG
36842100 TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACACTTGGGTATTCAGCAC
66 TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACACTTGGGTATTCAGCAC
36842165 AAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
131 AAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
36842230 CAGACAAGTTATCTGACTCATCTGGC
196 CAGACAAGTTATCTGACTCATCTGGC
*
36842256 CCAACTCGATACCAAACTCAGCCTTTCTTTCTAGGGGTAACCCTGGTAACTCCTCCAGAAAGACG
1 CCAACTCGATACCAAACTCAACCTTTCTTTCTAGGGGTAACCCTGGTAACTCCTCCAGAAAGACG
36842321 TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACA-TTGGGTATTCAGCAC
66 TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACACTTGGGTATTCAGCAC
*
36842385 AAAAGCAAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
131 AAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
36842450 CAGACAAGTTATCTGACTCATCTGGC
196 CAGACAAGTTATCTGACTCATCTGGC
* * *
36842476 CCAACTCGATACCAAACTGAACCTTTCTTTCTGGGGGTAACCCTGGTAGCTCCTCCAGAAAGACG
1 CCAACTCGATACCAAACTCAACCTTTCTTTCTAGGGGTAACCCTGGTAACTCCTCCAGAAAGACG
*
36842541 TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACACTTGGGTATTCAACAC
66 TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACACTTGGGTATTCAGCAC
36842606 AAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
131 AAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
36842671 CAGACAAGTTATCTGACTCATCTGGC
196 CAGACAAGTTATCTGACTCATCTGGC
36842697 CCAACTCGA
1 CCAACTCGA
36842706 AGAACATTTC
Statistics
Matches: 656, Mismatches: 14, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
220 215 0.33
221 441 0.67
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (221 bp):
CCAACTCGATACCAAACTCAACCTTTCTTTCTAGGGGTAACCCTGGTAACTCCTCCAGAAAGACG
TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACACTTGGGTATTCAGCAC
AAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
CAGACAAGTTATCTGACTCATCTGGC
Found at i:36842490 original size:441 final size:442
Alignment explanation
Indices: 36841814--36842705 Score: 1705
Period size: 441 Copynumber: 2.0 Consensus size: 442
36841804 GTACCAGGAG
36841814 CCAACTCGATACCAAACTCAACCTTTCTTTCTAGGGCTAACCCTGGTAACTCCTCCAGAAAGACG
1 CCAACTCGATACCAAACTCAACCTTTCTTTCTAGGGCTAACCCTGGTAACTCCTCCAGAAAGACG
36841879 TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACACTTGGGTATTCAGCAC
66 TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACACTTGGGTATTCAGCAC
*
36841944 AAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
131 AAAAGCAAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
36842009 CAGACAAGTTATCTGACTCATCTAGCCCAACTCGATACCAAACTCAACCTTTCTTTCTGGGGGTA
196 CAGACAAGTTATCTGACTCATCTAGCCCAACTCGATACCAAACTCAACCTTTCTTTCTGGGGGTA
*
36842074 ACCCTGGTAACTCCTCCAGAAAGATGTCTATAAACTCACAAACCACTGGTACTGACTCAATCTTC
261 ACCCTGGTAACTCCTCCAGAAAGACGTCTATAAACTCACAAACCACTGGTACTGACTCAATCTTC
*
36842139 GACTTTGACACTTGGGTATTCAGCACAAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCT
326 GACTTTGACACTTGGGTATTCAACACAAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCT
36842204 TTCGGCTACCAAAGACGATATTACCACAGACAAGTTATCTGACTCATCTGGC
391 TTCGGCTACCAAAGACGATATTACCACAGACAAGTTATCTGACTCATCTGGC
* *
36842256 CCAACTCGATACCAAACTCAGCCTTTCTTTCTAGGGGTAACCCTGGTAACTCCTCCAGAAAGACG
1 CCAACTCGATACCAAACTCAACCTTTCTTTCTAGGGCTAACCCTGGTAACTCCTCCAGAAAGACG
36842321 TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACA-TTGGGTATTCAGCAC
66 TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACACTTGGGTATTCAGCAC
36842385 AAAAGCAAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
131 AAAAGCAAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
* *
36842450 CAGACAAGTTATCTGACTCATCTGGCCCAACTCGATACCAAACTGAACCTTTCTTTCTGGGGGTA
196 CAGACAAGTTATCTGACTCATCTAGCCCAACTCGATACCAAACTCAACCTTTCTTTCTGGGGGTA
*
36842515 ACCCTGGTAGCTCCTCCAGAAAGACGTCTATAAACTCACAAACCACTGGTACTGACTCAATCTTC
261 ACCCTGGTAACTCCTCCAGAAAGACGTCTATAAACTCACAAACCACTGGTACTGACTCAATCTTC
36842580 GACTTTGACACTTGGGTATTCAACACAAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCT
326 GACTTTGACACTTGGGTATTCAACACAAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCT
36842645 TTCGGCTACCAAAGACGATATTACCACAGACAAGTTATCTGACTCATCTGGC
391 TTCGGCTACCAAAGACGATATTACCACAGACAAGTTATCTGACTCATCTGGC
36842697 CCAACTCGA
1 CCAACTCGA
36842706 AGAACATTTC
Statistics
Matches: 442, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
441 330 0.75
442 112 0.25
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (442 bp):
CCAACTCGATACCAAACTCAACCTTTCTTTCTAGGGCTAACCCTGGTAACTCCTCCAGAAAGACG
TCTATAAACTCACAAACCACTGGTACTGACTCAATCTTCGACTTTGACACTTGGGTATTCAGCAC
AAAAGCAAGATAAGCTTCATAACCTTTTCTCAAATATCTTTCGGCTACCAAAGACGATATTACCA
CAGACAAGTTATCTGACTCATCTAGCCCAACTCGATACCAAACTCAACCTTTCTTTCTGGGGGTA
ACCCTGGTAACTCCTCCAGAAAGACGTCTATAAACTCACAAACCACTGGTACTGACTCAATCTTC
GACTTTGACACTTGGGTATTCAACACAAAAGCTAGATAAGCTTCATAACCTTTTCTCAAATATCT
TTCGGCTACCAAAGACGATATTACCACAGACAAGTTATCTGACTCATCTGGC
Found at i:36845170 original size:46 final size:45
Alignment explanation
Indices: 36845117--36845292 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
36845107 TATTTGGGCA
36845117 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
36845163 TCCGAACTCTTTGAGTTGAGTCCGAGTTCGAAAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
36845210 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
36845256 -CCTAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36845293 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 4 0.04
46 62 0.60
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:36845272 original size:93 final size:93
Alignment explanation
Indices: 36845113--36845284 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
36845103 AGGATATTTG
* * *
36845113 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCTTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAG
36845178 TTGAGTCCGAGTTCGAAAGATGTAACTA
66 TTGAGTCCGAGTTCGAAAGATGTAACTA
* * *
36845206 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG-CCTAAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAA-CTCGTTGA
36845270 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
36845285 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 4 0.06
93 68 0.94
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAAAGATGTAACTA
Found at i:36850705 original size:13 final size:13
Alignment explanation
Indices: 36850687--36850711 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36850677 TGTTGTTGTG
36850687 ATTAGCCAAATGT
1 ATTAGCCAAATGT
36850700 ATTAGCCAAATG
1 ATTAGCCAAATG
36850712 CCCATGGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (13 bp):
ATTAGCCAAATGT
Found at i:36851969 original size:47 final size:46
Alignment explanation
Indices: 36851857--36852066 Score: 155
Period size: 47 Copynumber: 4.6 Consensus size: 46
36851847 TGCGTACTGG
* * *
36851857 TGCATGTCCGAGACATGTCTTACACTAGCA-CAACTCTT-A-GCTGA
1 TGCATGTCCCAGACATGTCTTACACTAGCATCATCT-TTGAGGCCGA
* * **
36851901 TGCGTGTCCCAGCCAAATCTTACACTAGCTATC-TCTGTTGAGGCCGA
1 TGCATGTCCCAGACATGTCTTACACTAGC-ATCATCT-TTGAGGCCGA
* * * *
36851948 TGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTTTG-TGCTGA
1 TGCATGTCCCAGACATGTCTTACACTAGCA-TCATCTTTGAGGCCGA
* * * * *
36851994 TGCATGTTCCAAACATGTCCTTACACTAGC-TC-TCATAATGTGGCCAA
1 TGCATGTCCCAGACATGT-CTTACACTAGCATCATC-T-TTGAGGCCGA
*
36852041 AGCATGTCCCAGACATGTCTTACACT
1 TGCATGTCCCAGACATGTCTTACACT
36852067 GGCACACGAA
Statistics
Matches: 129, Mismatches: 27, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
44 26 0.20
45 8 0.06
46 33 0.26
47 59 0.46
48 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (46 bp):
TGCATGTCCCAGACATGTCTTACACTAGCATCATCTTTGAGGCCGA
Found at i:36852806 original size:12 final size:12
Alignment explanation
Indices: 36852789--36852813 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36852779 TAAAAATGTA
36852789 AAAATCATCAAG
1 AAAATCATCAAG
36852801 AAAATCATCAAG
1 AAAATCATCAAG
36852813 A
1 A
36852814 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:36852935 original size:36 final size:36
Alignment explanation
Indices: 36852895--36852964 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
36852885 TCAGTGGAGA
* *
36852895 AAGAAGATGAGGAAGAAGGAAATGATAGCTAGGCAT
1 AAGAAGATAAAGAAGAAGGAAATGATAGCTAGGCAT
*
36852931 AAGAAGATAAAGAAGAATGAAATGATAGCTAGGC
1 AAGAAGATAAAGAAGAAGGAAATGATAGCTAGGC
36852965 TTTTAGGCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.50, C:0.06, G:0.30, T:0.14
Consensus pattern (36 bp):
AAGAAGATAAAGAAGAAGGAAATGATAGCTAGGCAT
Found at i:36856183 original size:8 final size:8
Alignment explanation
Indices: 36856163--36856200 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
36856153 AGTCAAGCAC
36856163 AGAA-AAG
1 AGAAGAAG
*
36856170 AGAAGAAA
1 AGAAGAAG
*
36856178 AGAAGATG
1 AGAAGAAG
36856186 AGAAGAAG
1 AGAAGAAG
36856194 AGAAGAA
1 AGAAGAA
36856201 CGGTATCTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
7 4 0.15
8 22 0.85
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.03
Consensus pattern (8 bp):
AGAAGAAG
Found at i:36857622 original size:43 final size:43
Alignment explanation
Indices: 36857575--36857700 Score: 155
Period size: 43 Copynumber: 2.9 Consensus size: 43
36857565 TATAACATAT
* * *
36857575 CGATGCTAATGTCCCAAACATGGTCTTACACGAAATCATATA-A
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACA-ACA
* *
36857618 CGATGCCAATGTCCCAGACATGGTATTACACGTAATCACAACA
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAACA
* * * *
36857661 CAATGCCAACGTCCCAGACATGGTCTTACATGTAATCACA
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACA
36857701 TCTCGGTAAT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 1 0.01
43 72 0.99
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAACA
Found at i:36863853 original size:57 final size:58
Alignment explanation
Indices: 36863791--36863901 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
36863781 GAATTCACAT
* *
36863791 ACCTGTATCTGGCCCGTTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
36863848 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
36863902 GTCACATTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 21 0.44
58 27 0.56
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:36863857 original size:29 final size:29
Alignment explanation
Indices: 36863794--36863901 Score: 139
Period size: 29 Copynumber: 3.8 Consensus size: 29
36863784 TTCACATACC
* * *
36863794 TGTATCTGGCCCGTTAAGCCC-AATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
36863822 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
36863851 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
36863880 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
36863902 GTCACATTCA
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.01
28 16 0.23
29 52 0.74
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:36864005 original size:9 final size:9
Alignment explanation
Indices: 36863991--36864015 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
36863981 TAGCCCATCG
36863991 GCCCATTAA
1 GCCCATTAA
36864000 GCCCATTAA
1 GCCCATTAA
36864009 GCCCATT
1 GCCCATT
36864016 CTGGCCCGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.28, C:0.36, G:0.12, T:0.24
Consensus pattern (9 bp):
GCCCATTAA
Found at i:36864157 original size:16 final size:16
Alignment explanation
Indices: 36864133--36864171 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
36864123 GTAGCCAAAC
* *
36864133 TTTCAGCTTTTTGGCA
1 TTTCGGCTTTTTAGCA
36864149 TTTCGGCTTTTTAGCA
1 TTTCGGCTTTTTAGCA
36864165 TTTCGGC
1 TTTCGGC
36864172 ATTTCGGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.10, C:0.21, G:0.21, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTTAGCA
Found at i:36865756 original size:21 final size:22
Alignment explanation
Indices: 36865730--36865780 Score: 77
Period size: 21 Copynumber: 2.3 Consensus size: 22
36865720 CAAAGTGGCA
*
36865730 CCCCTGGATTAATAGCAGGG-G
1 CCCCTGGATTAATAACAGGGTG
36865751 CCCCTGGATTAATAACAGGGTG
1 CCCCTGGATTAATAACAGGGTG
36865773 CCCTCTGG
1 CCC-CTGG
36865781 CCCATTAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 19 0.70
22 4 0.15
23 4 0.15
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (22 bp):
CCCCTGGATTAATAACAGGGTG
Found at i:36868309 original size:28 final size:29
Alignment explanation
Indices: 36868277--36868391 Score: 139
Period size: 29 Copynumber: 4.0 Consensus size: 29
36868267 TACCTGTATC
*
36868277 TGGCCCATTAAGCCC-AATCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
36868305 TGGCCCATTAGGCCCAAATCATC-TGT-ATA
1 TGGCCCATTAGGCCCAAATCA-CAT-TCATA
* *
36868334 TGGCCTATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
36868363 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
36868391 T
1 T
36868392 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
28 28 0.37
29 46 0.61
30 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:36868367 original size:58 final size:57
Alignment explanation
Indices: 36868270--36868378 Score: 164
Period size: 58 Copynumber: 1.9 Consensus size: 57
36868260 ATTCACATAC
*
36868270 CTGTATCTGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCAT
1 CTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCAT
* * * *
36868327 CTGTATATGGCCTATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 CTGTATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
36868379 GTCACATTCA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 19 0.41
58 27 0.59
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (57 bp):
CTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCAT
Found at i:36870971 original size:27 final size:27
Alignment explanation
Indices: 36870953--36871022 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
36870943 ATAGTGAGTC
36870953 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
36870980 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
*
36871008 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
36871023 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:36876485 original size:40 final size:39
Alignment explanation
Indices: 36876320--36876503 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
36876310 AAATTGAATG
* * *
36876320 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * * *
36876360 ATAACCGGGTTAAGACTCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
36876400 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
36876440 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
36876479 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
36876504 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 28, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 102 0.92
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:36884597 original size:40 final size:39
Alignment explanation
Indices: 36884432--36884615 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
36884422 AAATTGAATG
* * *
36884432 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
36884472 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
36884512 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
36884552 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
36884591 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
36884616 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:36884640 original size:80 final size:81
Alignment explanation
Indices: 36884472--36884660 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
36884462 GCTGGAAATT
* * * *
36884472 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
36884537 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
36884553 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
36884616 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
36884632 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
36884661 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:36895955 original size:39 final size:39
Alignment explanation
Indices: 36895847--36896037 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
36895837 TGAATGATGT
* ** * *
36895847 CCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTG-CGAGTTACTA-AA
* * *
36895887 CCGGACTAAGAT-CCGAAGGCGTTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
36895926 TCCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
36895965 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
36896006 CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
36896038 CGTTATATCC
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 33 0.27
40 83 0.67
41 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:36896052 original size:79 final size:77
Alignment explanation
Indices: 36895880--36896062 Score: 179
Period size: 79 Copynumber: 2.3 Consensus size: 77
36895870 GTGTTAAGTG
* *
36895880 ACTATATCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGCTAAGCCCAAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCAAAGG
* *
36895945 CATTTGTGCGAGTT
64 CATTTGAGCGAGTC
* * * ** *
36895959 ACTAAACCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGCTTTGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AATCCGGGCTAAG-CCCAAA
36896023 GGCATTTGAGCGAGTC
62 GGCATTTGAGCGAGTC
** *
36896039 GTTATATCCGGTTAAATTCCGAAG
1 ACTATATCCGGTT-AAGTCCGAAG
36896063 ATACGTGATT
Statistics
Matches: 84, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
78 1 0.01
79 52 0.62
80 31 0.37
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCAAAGGCA
TTTGAGCGAGTC
Found at i:36900254 original size:39 final size:39
Alignment explanation
Indices: 36900198--36900275 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
36900188 CCCCGTGGAG
* *
36900198 ACGATAACTCGAGACTTACTTATTACTTGATTACGACTA
1 ACGATAACTCGAGACTTACTTATGACTTGATAACGACTA
*
36900237 ACGATAACTCGATACTTACTTATGACTTGATAACGACTA
1 ACGATAACTCGAGACTTACTTATGACTTGATAACGACTA
36900276 TGTACACTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.32
Consensus pattern (39 bp):
ACGATAACTCGAGACTTACTTATGACTTGATAACGACTA
Found at i:36901177 original size:14 final size:14
Alignment explanation
Indices: 36901158--36901187 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
36901148 TTCACTTATT
36901158 ATAAATTCGAATAC
1 ATAAATTCGAATAC
36901172 ATAAATTCGAATAC
1 ATAAATTCGAATAC
36901186 AT
1 AT
36901188 GGGTCATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (14 bp):
ATAAATTCGAATAC
Found at i:36903084 original size:26 final size:26
Alignment explanation
Indices: 36903055--36903114 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
36903045 TCCCTTTGAA
* * *
36903055 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
36903081 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
36903109 TCATTC
1 TCATTC
36903115 TCAATATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 22 0.76
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:36903100 original size:28 final size:28
Alignment explanation
Indices: 36903069--36903136 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
36903059 TCGATATTTT
36903069 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
36903097 GCACACTAAGTGTCATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTCAATATCTC
* *
36903125 GTACACTGAGTG
1 GCACACTAAGTG
36903137 CCATATTTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTCAATATCTC
Found at i:36905346 original size:22 final size:22
Alignment explanation
Indices: 36905321--36905384 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
36905311 TAAATATGAT
36905321 TGGCACAAAGCCATAATCAGGA
1 TGGCACAAAGCCATAATCAGGA
* ** * *
36905343 TGGCACAGAGCCATTTTTAGGT
1 TGGCACAAAGCCATAATCAGGA
*
36905365 TGGCAAAAAGCCATAATCAG
1 TGGCACAAAGCCATAATCAG
36905385 ATTACACAGC
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (22 bp):
TGGCACAAAGCCATAATCAGGA
Found at i:36905777 original size:27 final size:27
Alignment explanation
Indices: 36905732--36905848 Score: 166
Period size: 27 Copynumber: 4.4 Consensus size: 27
36905722 GGCAAAATAA
* *
36905732 TAATTTT-CCCTACAGGGGTATTTCAG
1 TAATTTTACACTACAAGGGTATTTCAG
*
36905758 TAATTTTACACTACAAGGGTATTTCGG
1 TAATTTTACACTACAAGGGTATTTCAG
36905785 TAATTTTACACTACAAGGGTATTTC-G
1 TAATTTTACACTACAAGGGTATTTCAG
*
36905811 ATAATTGTACACTACAAGGGTATTTCAG
1 -TAATTTTACACTACAAGGGTATTTCAG
*
36905839 TATTTTTACA
1 TAATTTTACA
36905849 AATCGGGGCT
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
26 8 0.10
27 73 0.89
28 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.38
Consensus pattern (27 bp):
TAATTTTACACTACAAGGGTATTTCAG
Found at i:36905862 original size:54 final size:54
Alignment explanation
Indices: 36905742--36905875 Score: 157
Period size: 54 Copynumber: 2.5 Consensus size: 54
36905732 TAATTTTCCC
* * *
36905742 TACAGGGGTATTTCAGTAATTTTACACTACAAGGGTATTTCGGTAATTTTACAC
1 TACAGGGGTATTTCAGTAATTGTACACTACAAGGGTATTTCAGTAATTTTACAA
* *
36905796 TACAAGGGTATTTC-GATAATTGTACACTACAAGGGTATTTCAGTATTTTTACAA
1 TACAGGGGTATTTCAG-TAATTGTACACTACAAGGGTATTTCAGTAATTTTACAA
* *
36905850 -ATC-GGGGCTATTTTAGTAATTTTACA
1 TA-CAGGGG-TATTTCAGTAATTGTACA
36905876 AACTGGGGTC
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
53 5 0.07
54 62 0.91
55 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (54 bp):
TACAGGGGTATTTCAGTAATTGTACACTACAAGGGTATTTCAGTAATTTTACAA
Found at i:36908643 original size:22 final size:22
Alignment explanation
Indices: 36908577--36908644 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
36908567 GTTATAAACC
* *
36908577 ATAATCAAGATGGCACAAAGAC-
1 ATAATCAGGATGGCAC-AAGGCT
* *
36908599 ATAATAAGGATGGCA-GAGAGCT
1 ATAATCAGGATGGCACAAG-GCT
36908621 ATAATCAGGATGGCACAAGGCT
1 ATAATCAGGATGGCACAAGGCT
36908643 AT
1 AT
36908645 CGGTAACTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
20 2 0.05
21 1 0.03
22 32 0.86
23 2 0.05
ACGTcount: A:0.43, C:0.15, G:0.25, T:0.18
Consensus pattern (22 bp):
ATAATCAGGATGGCACAAGGCT
Found at i:36909164 original size:27 final size:27
Alignment explanation
Indices: 36909146--36909222 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
36909136 TTTGCCCTAC
* *
36909146 AAGGGTATATCGATAATTTTTCACTAT
1 AAGGGTATTTCGATAATTTTACACTAT
36909173 AAGGGTATTTCGATAATTTTACACTAT
1 AAGGGTATTTCGATAATTTTACACTAT
*
36909200 AAGGGTATTTCGGTAATTTTACA
1 AAGGGTATTTCGATAATTTTACA
36909223 AACTGGCGTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTCGATAATTTTACACTAT
Found at i:36909242 original size:26 final size:26
Alignment explanation
Indices: 36909204--36909253 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
36909194 CACTATAAGG
36909204 GTATTTCGGTAATTTTACAAACTGGC
1 GTATTTCGGTAATTTTACAAACTGGC
*
36909230 GTATTT-GGATAATTTTATAAACTG
1 GTATTTCGG-TAATTTTACAAACTG
36909254 AGGTCTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (26 bp):
GTATTTCGGTAATTTTACAAACTGGC
Found at i:36911601 original size:28 final size:28
Alignment explanation
Indices: 36911540--36911637 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
36911530 TCACAAATTG
** * *
36911540 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
36911569 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
36911597 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
36911625 GCACTAAGTGTGC
1 GCACTAAGTGTGC
36911638 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:36919269 original size:28 final size:28
Alignment explanation
Indices: 36919208--36919305 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
36919198 TCACAAATTG
** * *
36919208 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
36919237 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
36919265 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
36919293 GCACTAAGTGTGC
1 GCACTAAGTGTGC
36919306 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:36923071 original size:39 final size:40
Alignment explanation
Indices: 36923026--36923209 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
36923016 GCTACTCGTT
*
36923026 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
36923066 C-AATGCCTTCGGGACTTAACCCGGATTTA-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
36923104 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
36923144 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
36923185 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36923210 CATCATTCGA
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
38 13 0.10
39 45 0.35
40 60 0.47
41 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36925735 original size:13 final size:13
Alignment explanation
Indices: 36925693--36925741 Score: 62
Period size: 13 Copynumber: 3.8 Consensus size: 13
36925683 TCATACATAT
36925693 ATTTCATATAACC
1 ATTTCATATAACC
* *
36925706 AATTCACATAACC
1 ATTTCATATAACC
*
36925719 ATTTCATATAACT
1 ATTTCATATAACC
*
36925732 ATTTCGTATA
1 ATTTCATATA
36925742 TTAGTTTCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.39
Consensus pattern (13 bp):
ATTTCATATAACC
Found at i:36933577 original size:40 final size:40
Alignment explanation
Indices: 36933453--36933579 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
36933443 GCTGGAAATT
* * * * *
36933453 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
36933493 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
36933533 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
36933573 TATCCGG
1 TATCCGG
36933580 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:36935403 original size:40 final size:39
Alignment explanation
Indices: 36935358--36935487 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
36935348 CGGAATATAA
36935358 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
36935398 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
36935438 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
36935478 CCGGATATAA
1 CCGGATATAA
36935488 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:36935502 original size:40 final size:40
Alignment explanation
Indices: 36935374--36935524 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
36935364 ATAACCATGT
* * *
36935374 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
36935414 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
36935454 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
36935494 GCATAATTGTCTTCGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
36935525 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 14 0.16
40 74 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:36935508 original size:80 final size:79
Alignment explanation
Indices: 36935374--36935522 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
36935364 ATAACCATGT
* *
36935374 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGAT-TTAGCC
36935439 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
36935454 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGATTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGATTTAGC
36935517 CCGGAT
64 CCGGAT
36935523 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGATTTAGCCC
GGATGTAGCCACTA
Found at i:36943409 original size:40 final size:39
Alignment explanation
Indices: 36943364--36943493 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
36943354 CGGAATATAA
36943364 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
36943404 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
36943444 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
36943484 CCGGATATAA
1 CCGGATATAA
36943494 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:36943508 original size:40 final size:40
Alignment explanation
Indices: 36943380--36943531 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
36943370 ATAACCATGT
* * *
36943380 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
36943420 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
36943460 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
36943500 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
36943532 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:36943514 original size:80 final size:80
Alignment explanation
Indices: 36943380--36943529 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
36943370 ATAACCATGT
*
36943380 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
36943444 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
36943460 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
36943523 CCCGGAT
64 CCCGGAT
36943530 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:36960978 original size:21 final size:20
Alignment explanation
Indices: 36960954--36960992 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
36960944 ATTTAATTAA
36960954 GAAATATGTAAAATTAATGGT
1 GAAATATGTAAAA-TAATGGT
* *
36960975 GAAATGTGTGAAATAATG
1 GAAATATGTAAAATAATG
36960993 AAAATTTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (20 bp):
GAAATATGTAAAATAATGGT
Found at i:36963960 original size:24 final size:24
Alignment explanation
Indices: 36963933--36964067 Score: 225
Period size: 24 Copynumber: 5.6 Consensus size: 24
36963923 CTTATTATGT
* * *
36963933 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
36963957 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
36963981 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
36964005 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
36964029 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
36964053 TCGCACACATAGTGC
1 TCGCACACATAGTGC
36964068 ATTTGAGATA
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 107 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:36963967 original size:48 final size:47
Alignment explanation
Indices: 36963911--36964067 Score: 215
Period size: 48 Copynumber: 3.3 Consensus size: 47
36963901 ACCGAATGTG
* ** * * *
36963911 GCACACATAGTGCTTATTATGTTCGCACACATAGAGCTATAGCAAATC
1 GCACACATAGTGCTTAGTA-AATCGCACACATAGTGCCATAGTAAATC
36963959 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATCGCACACATAGTGCCATAGTAAATC
* *
36964007 GCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTGAATC
1 GCACACATAGTG-CTTAGTAAATCGCACACATAGTGCCATAGTAAATC
36964055 GCACACATAGTGC
1 GCACACATAGTGC
36964068 ATTTGAGATA
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
47 1 0.01
48 93 0.94
49 5 0.05
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (47 bp):
GCACACATAGTGCTTAGTAAATCGCACACATAGTGCCATAGTAAATC
Found at i:36971770 original size:24 final size:24
Alignment explanation
Indices: 36971743--36971914 Score: 287
Period size: 24 Copynumber: 7.3 Consensus size: 24
36971733 CTTATTATGT
* * *
36971743 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
36971767 TCGCACACATAGTG-CATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
36971790 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
36971814 TCGCACACA-AGTG-CATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
36971836 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
36971860 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
36971884 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
36971908 TCGCACA
1 TCGCACA
36971915 TAGTGCATTT
Statistics
Matches: 141, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
22 18 0.13
23 29 0.21
24 94 0.67
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:36971844 original size:46 final size:47
Alignment explanation
Indices: 36971743--36971922 Score: 294
Period size: 46 Copynumber: 3.9 Consensus size: 47
36971733 CTTATTATGT
* * *
36971743 TCGCACACATAGAGCTATAGCAAATCGCACACATAGTGCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCATAGTAAA
36971790 TCGCACACATAGTGCCATAGTAAATCGCACACA-AGTGCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCATAGTAAA
36971836 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTG-CATAGTAAA
*
36971884 TCGCACACATAGTGCCATAGTGAATCG--CACATAGTGCAT
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCAT
36971923 TTGAGATAGC
Statistics
Matches: 127, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
45 3 0.02
46 55 0.43
47 34 0.27
48 35 0.28
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (47 bp):
TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCATAGTAAA
Found at i:36971872 original size:70 final size:70
Alignment explanation
Indices: 36971743--36971922 Score: 285
Period size: 70 Copynumber: 2.6 Consensus size: 70
36971733 CTTATTATGT
* *
36971743 TCGCACACATAGAGCTATAGCAAATCGCACACATAGTGCATAGTAAATCGCACACATAGTGCCAT
1 TCGCACACATAGTGC-ATAGTAAATCGCACACATAGTGCATAGTAAATCGCACACATAGTGCCAT
36971808 AGTAAA
65 AGTAAA
36971814 TCGCACACA-AGTGCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCAT
1 TCGCACACATAGTGCATAGTAAATCGCACACATAGTG-CATAGTAAATCGCACACATAGTGCCAT
36971878 AGTAAA
65 AGTAAA
*
36971884 TCGCACACATAGTGCCATAGTGAATCG--CACATAGTGCAT
1 TCGCACACATAGTG-CATAGTAAATCGCACACATAGTGCAT
36971923 TTGAGATAGC
Statistics
Matches: 103, Mismatches: 3, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
69 24 0.23
70 55 0.53
71 13 0.13
72 11 0.11
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (70 bp):
TCGCACACATAGTGCATAGTAAATCGCACACATAGTGCATAGTAAATCGCACACATAGTGCCATA
GTAAA
Found at i:36974814 original size:71 final size:71
Alignment explanation
Indices: 36974728--36974891 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
36974718 CGATTTGTCT
36974728 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36974793 CTTTCA
66 CTTTCA
36974799 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36974864 CTTTCA
66 CTTTCA
36974870 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36974892 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36974929 original size:71 final size:70
Alignment explanation
Indices: 36974728--36974925 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
36974718 CGATTTGTCT
* * * *
36974728 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36974793 CTTTCA
65 CTTTCA
* * * *
36974799 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36974864 CTTTCA
65 CTTTCA
* *
36974870 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
36974926 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:36982375 original size:71 final size:71
Alignment explanation
Indices: 36982291--36982454 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
36982281 CGATTTGTCT
36982291 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36982356 CTTTCA
66 CTTTCA
36982362 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36982427 CTTTCA
66 CTTTCA
36982433 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36982455 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36982492 original size:71 final size:70
Alignment explanation
Indices: 36982291--36982488 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
36982281 CGATTTGTCT
* * * *
36982291 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36982356 CTTTCA
65 CTTTCA
* * * *
36982362 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36982427 CTTTCA
65 CTTTCA
* *
36982433 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
36982489 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:36994470 original size:26 final size:22
Alignment explanation
Indices: 36994417--36994460 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
36994407 AAAAATGACC
36994417 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTTATTAT
*
36994439 AAAATTAATTAAAATTTATTAT
1 AAAATTAATCAAAATTTATTAT
36994461 GTTAATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATCAAAATTTATTAT
Found at i:37008622 original size:43 final size:42
Alignment explanation
Indices: 37008542--37008691 Score: 178
Period size: 42 Copynumber: 3.6 Consensus size: 42
37008532 ATACCAATGC
* * * *
37008542 CATATCCCAGATATGGTCTTACATG-GGATCTCGTATCGATGG
1 CATATCCTAGATATGGTCTTACACGAAG-TCTCATATCGATGG
* * * *
37008584 CAATAGCCTAGCTATGGTCTTACACGAAGTCTCTTATCGATGT
1 C-ATATCCTAGATATGGTCTTACACGAAGTCTCATATCGATGG
* *
37008627 CATATCCCAGATATGGTCTTACACGAAGTCTCATATAGAT-G
1 CATATCCTAGATATGGTCTTACACGAAGTCTCATATCGATGG
37008668 CATATCCTAGATATGGTCTTACAC
1 CATATCCTAGATATGGTCTTACAC
37008692 ATAATTTTAG
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
41 23 0.25
42 35 0.38
43 33 0.36
44 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (42 bp):
CATATCCTAGATATGGTCTTACACGAAGTCTCATATCGATGG
Found at i:37013045 original size:38 final size:38
Alignment explanation
Indices: 37012994--37013141 Score: 154
Period size: 38 Copynumber: 3.8 Consensus size: 38
37012984 GTTTAAGTAA
*
37012994 TTAATTATGTCATAATTTAAACATCATTAATATGAGTT
1 TTAATTATGTCATAATTTAAACATCTTTAATATGAGTT
* * *
37013032 TTAATTATGTCATAATCTGAACATCTTTAATAAGAGATT
1 TTAATTATGTCATAATTTAAACATCTTTAATATGAG-TT
* * *
37013071 TTAATTATGTCATAGTTTAGGACATCTTAAATAT-ATGTT
1 TTAATTATGTCATAATTTA-AACATCTTTAATATGA-GTT
* * * * *
37013110 TTAAATGTGTCCTAGTTTAGACATCTTTAATA
1 TTAATTATGTCATAATTTAAACATCTTTAATA
37013142 CATGTCTTTA
Statistics
Matches: 93, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
38 44 0.47
39 37 0.40
40 12 0.13
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.44
Consensus pattern (38 bp):
TTAATTATGTCATAATTTAAACATCTTTAATATGAGTT
Found at i:37022618 original size:40 final size:41
Alignment explanation
Indices: 37022574--37022792 Score: 227
Period size: 40 Copynumber: 5.5 Consensus size: 41
37022564 GCTCGATTGT
* * * **
37022574 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAGTTGC
1 CTTCGGGACATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* *
37022614 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* *
37022654 CTTCGGGAC-TTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* *
37022694 CTTCGGGAC-TTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * * *
37022734 CTTCGGGA-ATT-GACCCAGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATTAG-CCCGGTTTTAGTAAC-TCGCACAAATGC
37022775 CTTCGGGAC-TTAGCCCGG
1 CTTCGGGACATTAGCCCGG
37022793 ACACCATTTG
Statistics
Matches: 153, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.02
40 125 0.82
41 24 0.16
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (41 bp):
CTTCGGGACATTAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:37028743 original size:49 final size:49
Alignment explanation
Indices: 37028666--37028928 Score: 409
Period size: 49 Copynumber: 5.4 Consensus size: 49
37028656 ATCAAGATTC
* * * *
37028666 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
37028715 GCGAAAATGTATGTATATGTGATAAGGCCTAATGACCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
37028764 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
37028813 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
37028862 GTGAAAGTGTATGTATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
37028911 GTGAAAGTGTATATATAT
1 GTGAAAGTGTATGTATAT
37028929 ATGTGGTAAA
Statistics
Matches: 200, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 200 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Done.