Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 131 of 378
Found at i:37029052 original size:37 final size:37
Alignment explanation
Indices: 37029011--37029083 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
37029001 TTCTGGGTGA
37029011 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTAC
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTAC
37029048 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
37029084 AGACTCGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.25
Consensus pattern (37 bp):
GACCCGATGACTACGTGTGGAGATTATGTCCGGGTAC
Found at i:37037195 original size:21 final size:20
Alignment explanation
Indices: 37037171--37037209 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
37037161 ATTTAATTAA
37037171 GAAATATGTAAAATTAATGGT
1 GAAATATGTAAAA-TAATGGT
* *
37037192 GAAATGTGTGAAATAATG
1 GAAATATGTAAAATAATG
37037210 AAAATTTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (20 bp):
GAAATATGTAAAATAATGGT
Found at i:37040175 original size:24 final size:24
Alignment explanation
Indices: 37040148--37040282 Score: 225
Period size: 24 Copynumber: 5.6 Consensus size: 24
37040138 CTTATTATGT
* * *
37040148 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
37040172 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
37040196 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
37040220 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
37040244 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
37040268 TCGCACACATAGTGC
1 TCGCACACATAGTGC
37040283 ATTTGAGATA
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 107 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:37040182 original size:48 final size:47
Alignment explanation
Indices: 37040126--37040282 Score: 215
Period size: 48 Copynumber: 3.3 Consensus size: 47
37040116 ACCGAATGTG
* ** * * *
37040126 GCACACATAGTGCTTATTATGTTCGCACACATAGAGCTATAGCAAATC
1 GCACACATAGTGCTTAGTA-AATCGCACACATAGTGCCATAGTAAATC
37040174 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATCGCACACATAGTGCCATAGTAAATC
* *
37040222 GCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTGAATC
1 GCACACATAGTG-CTTAGTAAATCGCACACATAGTGCCATAGTAAATC
37040270 GCACACATAGTGC
1 GCACACATAGTGC
37040283 ATTTGAGATA
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
47 1 0.01
48 93 0.94
49 5 0.05
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (47 bp):
GCACACATAGTGCTTAGTAAATCGCACACATAGTGCCATAGTAAATC
Found at i:37047999 original size:24 final size:24
Alignment explanation
Indices: 37047972--37048154 Score: 321
Period size: 24 Copynumber: 7.6 Consensus size: 24
37047962 CTTATTATGT
* * *
37047972 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
37047996 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
37048020 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
37048044 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
37048068 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
37048092 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
37048116 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
37048140 TCGCACACATAGTGC
1 TCGCACACATAGTGC
37048155 ATTTGAGATA
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 155 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:37052093 original size:13 final size:13
Alignment explanation
Indices: 37052075--37052101 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37052065 GAAGTAATCG
37052075 CACACGGGCGTGT
1 CACACGGGCGTGT
37052088 CACACGGGCGTGT
1 CACACGGGCGTGT
37052101 C
1 C
37052102 CCTACTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:37056356 original size:40 final size:40
Alignment explanation
Indices: 37056290--37056440 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
37056280 AAATTGAATG
* *
37056290 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
37056329 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
**
37056369 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
37056409 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
37056441 ACATGCTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:37056454 original size:40 final size:39
Alignment explanation
Indices: 37056327--37056456 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
37056317 ATGCTGGAAA
* * *
37056327 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
37056368 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
37056406 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
37056447 TTATATCCGG
1 TTATATCCGG
37056457 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:37058197 original size:27 final size:27
Alignment explanation
Indices: 37058140--37058199 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
37058130 ATACATCTCA
*
37058140 TAGGGGCATATCAATCATTTTACCATG
1 TAGGGGCATATCAATCATTTTACAATG
* * *
37058167 TAGGGGCATTTTAGTCATTTTATCAAT-
1 TAGGGGCATATCAATCATTTTA-CAATG
37058194 TAGGGG
1 TAGGGG
37058200 GTCTAGGTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (27 bp):
TAGGGGCATATCAATCATTTTACAATG
Found at i:37059768 original size:46 final size:46
Alignment explanation
Indices: 37059701--37060056 Score: 323
Period size: 46 Copynumber: 7.7 Consensus size: 46
37059691 ATGTACCCGC
* * * *
37059701 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
37059747 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
37059797 --TTCA-TGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGAAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * * *
37059840 CCATAAGTGGACTCGGACTCAACTCAACGAGCTCAGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * * * *
37059886 CCATAAGTGAACTCGAACTCGACTCAATGAGTTTGGATGCCAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-GTTCGCAT
* * *
37059935 --TTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * **
37059978 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCAGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
**
37060024 CCATAAGTGAACTTAGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
37060057 TGGATGCCAA
Statistics
Matches: 249, Mismatches: 44, Indels: 34
0.76 0.13 0.10
Matches are distributed among these distances:
42 6 0.02
43 6 0.02
44 1 0.00
45 4 0.02
46 185 0.74
47 30 0.12
48 4 0.02
49 5 0.02
50 6 0.02
51 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:37059985 original size:138 final size:138
Alignment explanation
Indices: 37059701--37060065 Score: 552
Period size: 138 Copynumber: 2.6 Consensus size: 138
37059691 ATGTACCCGC
* * * * *
37059701 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGAACT
*
37059766 CAACTCAACGAGTTCGGATGCCTAGTTACATTTCATGAACTCAGACTCAACTCAACGAGTTCGGA
66 CAACTCAACGAGTTTGGATGCC-AGTTACATTTCATGAACTCAGACTCAACTCAACGAGTTCGGA
37059831 CGTTCGAAT
130 CGTTCGAAT
* *
37059840 CCATAAGTGGACTCGGACTCAACTCAACGAGCTCAGGCGTTTGCATCCATAAGTGAACTCGAACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGAACT
* * *
37059905 CGACTCAATGAGTTTGGATGCCAGTTACATTTCATGAACTCGGACTCAACTCAACGAGTTCGGAC
66 CAACTCAACGAGTTTGGATGCCAGTTACATTTCATGAACTCAGACTCAACTCAACGAGTTCGGAC
*
37059970 GTTCGCAT
131 GTTCGAAT
* * ** *
37059978 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCAGATGTTCGCATCCATAAGTGAACT-TAGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGA-AC
37060042 TCAACTCAACGAGTTTGGATGCCA
65 TCAACTCAACGAGTTTGGATGCCA
37060066 AAATATTTGA
Statistics
Matches: 204, Mismatches: 21, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
137 1 0.00
138 126 0.62
139 77 0.38
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (138 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGAACT
CAACTCAACGAGTTTGGATGCCAGTTACATTTCATGAACTCAGACTCAACTCAACGAGTTCGGAC
GTTCGAAT
Found at i:37068731 original size:11 final size:11
Alignment explanation
Indices: 37068711--37068740 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
37068701 GAAAAGCTAA
*
37068711 AAAAGAAGAAG
1 AAAAGCAGAAG
37068722 AAAAGCAGAAG
1 AAAAGCAGAAG
37068733 AAAAGCAG
1 AAAAGCAG
37068741 GGACTTACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.67, C:0.07, G:0.27, T:0.00
Consensus pattern (11 bp):
AAAAGCAGAAG
Found at i:37069533 original size:104 final size:104
Alignment explanation
Indices: 37069353--37069560 Score: 389
Period size: 104 Copynumber: 2.0 Consensus size: 104
37069343 ATTCCCTCAT
*
37069353 AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGTGTTTCGGTCGATTTCTTATAC
1 AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGTGTTTCGGTCGACTTCTTATAC
37069418 CCACACGGCAAGAGCAACAAAATTAAACACTTCCTTGCA
66 CCACACGGCAAGAGCAACAAAATTAAACACTTCCTTGCA
37069457 AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGTGTTTCGGTCGACTTCTTATAC
1 AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGTGTTTCGGTCGACTTCTTATAC
* *
37069522 CCACATGGCAAGAGCAGCAAAATTAAACACTTCCTTGCA
66 CCACACGGCAAGAGCAACAAAATTAAACACTTCCTTGCA
37069561 TCAAGCAGTA
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
104 101 1.00
ACGTcount: A:0.32, C:0.31, G:0.11, T:0.26
Consensus pattern (104 bp):
AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGTGTTTCGGTCGACTTCTTATAC
CCACACGGCAAGAGCAACAAAATTAAACACTTCCTTGCA
Found at i:37071573 original size:26 final size:26
Alignment explanation
Indices: 37071544--37071596 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
37071534 TTAAACATGC
37071544 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* * *
37071570 ATTTCGGTACTTTATCTCCTATGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
37071596 A
1 A
37071597 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.42
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:37079393 original size:26 final size:26
Alignment explanation
Indices: 37079364--37079416 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
37079354 TCAAACATGC
37079364 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
37079390 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
37079416 A
1 A
37079417 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:37080704 original size:24 final size:24
Alignment explanation
Indices: 37080665--37080770 Score: 113
Period size: 24 Copynumber: 4.4 Consensus size: 24
37080655 GCCGGCCAAC
* * *
37080665 TCCTGCTCCTTGATCATCTTCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
* *
37080690 TCTTCTCCTTTATCAACTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
37080714 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
* * *
37080738 TCCTCTCCCTAATCAGCTTCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
37080762 TCTTCTCCT
1 TCCTCTCCT
37080771 GACAGCCTTT
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
24 67 0.96
25 3 0.04
ACGTcount: A:0.21, C:0.37, G:0.04, T:0.39
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:37085220 original size:39 final size:38
Alignment explanation
Indices: 37085177--37085259 Score: 94
Period size: 38 Copynumber: 2.1 Consensus size: 38
37085167 TAATAAGGGA
* * *
37085177 TTTTAACTATGTCATAGTTTAGGACATCTTAAATATATG
1 TTTTAAATATGTCATAG-TTAAGACATCTTAAATACATG
* * *
37085216 TTTTAAATGTGTCCTAGTTAAGACATCTTTAATACATG
1 TTTTAAATATGTCATAGTTAAGACATCTTAAATACATG
37085254 TCTTTA
1 T-TTTA
37085260 GTTCAGACAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
38 19 0.51
39 18 0.49
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (38 bp):
TTTTAAATATGTCATAGTTAAGACATCTTAAATACATG
Found at i:37086434 original size:31 final size:28
Alignment explanation
Indices: 37086397--37086458 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 28
37086387 TTTGAAGTAC
*
37086397 AAAGTTTGCAATATATAAATAAAAAA-AGAAG
1 AAAGTTT-CAA-AT-TAAA-AAAAAAGAAAAG
37086428 AAAGTTTCAAATTAAAAAAAAAGAAAAG
1 AAAGTTTCAAATTAAAAAAAAAGAAAAG
37086456 AAA
1 AAA
37086459 AGAAAAGAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 6 0.21
28 11 0.38
29 2 0.07
30 3 0.10
31 7 0.24
ACGTcount: A:0.66, C:0.03, G:0.11, T:0.19
Consensus pattern (28 bp):
AAAGTTTCAAATTAAAAAAAAAGAAAAG
Found at i:37090832 original size:48 final size:48
Alignment explanation
Indices: 37090752--37090887 Score: 159
Period size: 48 Copynumber: 2.8 Consensus size: 48
37090742 TGCACTCTAG
* * * * *
37090752 GTGCCAATATCACGGCTCGACGCCAAACCAATGAAGCTCGCA-CCAGAA
1 GTGCTAATATCATGGCGCGAAGCCAAATCAATGAAGCTCGCACCCA-AA
* * *
37090800 GTGCTAATATCATGGC-CTGAAGCCAAATCAATGAAGATTGTACCCAAA
1 GTGCTAATATCATGGCGC-GAAGCCAAATCAATGAAGCTCGCACCCAAA
*
37090848 GTGCTAATATCATGGCGCGAAGCCAAATCAATAAAGCTCG
1 GTGCTAATATCATGGCGCGAAGCCAAATCAATGAAGCTCG
37090888 TAATGACATG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
47 1 0.01
48 70 0.93
49 4 0.05
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.18
Consensus pattern (48 bp):
GTGCTAATATCATGGCGCGAAGCCAAATCAATGAAGCTCGCACCCAAA
Found at i:37092717 original size:42 final size:42
Alignment explanation
Indices: 37092609--37092761 Score: 164
Period size: 42 Copynumber: 3.6 Consensus size: 42
37092599 CATACCAATC
* * *
37092609 CCATATCCCAAATATGGTCTTACATG-GGATCTCGTATCGATG
1 CCATATCCCAAATATGGTCTTACACGAAG-TCTCATATCGATG
** *
37092651 CCAATAGTCCCAGCTATGGTCTTACACGAAGTCTCTTATCGATG
1 CC-ATA-TCCCAAATATGGTCTTACACGAAGTCTCATATCGATG
* * * **
37092695 CCATATCCCAAATATGCTCTTACAAGAAGTCTCACATAAATG
1 CCATATCCCAAATATGGTCTTACACGAAGTCTCATATCGATG
*
37092737 CCATATCTCAAATATGGTCTTACAC
1 CCATATCCCAAATATGGTCTTACAC
37092762 ATAGTTTTAG
Statistics
Matches: 92, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 53 0.58
43 6 0.07
44 32 0.35
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.29
Consensus pattern (42 bp):
CCATATCCCAAATATGGTCTTACACGAAGTCTCATATCGATG
Found at i:37109553 original size:12 final size:13
Alignment explanation
Indices: 37109528--37109556 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
37109518 AGATGGACAA
37109528 AATTTGACTTTTT
1 AATTTGACTTTTT
37109541 AATTTGA-TTTTT
1 AATTTGACTTTTT
37109553 AATT
1 AATT
37109557 CATTTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (13 bp):
AATTTGACTTTTT
Found at i:37112202 original size:34 final size:33
Alignment explanation
Indices: 37112155--37112235 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 33
37112145 TTAGCCCCTT
*
37112155 TTTCAGTAACAGTAGCAGA-CTAGGCCTTAG-CCTA
1 TTTCAGT-ACAGTAACA-ATCTAGGCCTTAGACC-A
*
37112189 TTTCAATAGCAGTAACAATCTAGGCCTTAGACCA
1 TTTCAGTA-CAGTAACAATCTAGGCCTTAGACCA
37112223 TTTCAGTACAGTA
1 TTTCAGTACAGTA
37112236 TGCAAGCAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
33 7 0.17
34 32 0.78
35 2 0.05
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (33 bp):
TTTCAGTACAGTAACAATCTAGGCCTTAGACCA
Found at i:37121027 original size:29 final size:29
Alignment explanation
Indices: 37120937--37121096 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
37120927 TACTCATTTC
* * **
37120937 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
37120966 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
37120994 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
37121024 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37121053 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37121082 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
37121097 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:37126116 original size:28 final size:28
Alignment explanation
Indices: 37126055--37126152 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
37126045 TCACAAATTG
** * *
37126055 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
37126084 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
37126112 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
37126140 GCACTAAGTGTGC
1 GCACTAAGTGTGC
37126153 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:37138743 original size:29 final size:29
Alignment explanation
Indices: 37138653--37138812 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
37138643 ACTCGATTTC
* * **
37138653 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
37138682 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
37138710 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
37138740 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37138769 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37138798 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
37138813 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:37143726 original size:40 final size:40
Alignment explanation
Indices: 37143677--37143844 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
37143667 TCTTCGGAAT
* ** *
37143677 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *** *
37143716 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
37143756 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
37143796 TTAGCCCGGATATAATC-ACTCGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
37143836 TTAGCCCGG
1 TTAGCCCGG
37143845 GTATCATTCA
Statistics
Matches: 108, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 104 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:37151697 original size:40 final size:40
Alignment explanation
Indices: 37151648--37151815 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
37151638 TCTTCGGAAT
* * *
37151648 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
37151687 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
37151727 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
37151767 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
37151807 TTAGCCCGG
1 TTAGCCCGG
37151816 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:37159623 original size:40 final size:40
Alignment explanation
Indices: 37159578--37159744 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
37159568 CGGAATATAA
37159578 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
37159618 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
37159658 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
37159698 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
37159737 CCGGATAT
1 CCGGATAT
37159745 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37167644 original size:40 final size:40
Alignment explanation
Indices: 37167599--37167766 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
37167589 CGGAATATAA
37167599 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
37167639 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
37167679 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
37167719 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
37167759 CCGGATAT
1 CCGGATAT
37167767 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37172612 original size:158 final size:158
Alignment explanation
Indices: 37172324--37172636 Score: 617
Period size: 158 Copynumber: 2.0 Consensus size: 158
37172314 TCTGCTTATG
*
37172324 AAGCATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGGATTTGGTGAATAATAG
1 AAGCATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGCATTTGGTGAATAATAG
37172389 TAATGAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTC
66 TAATGAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTC
37172454 ACTATAAATTGCAGAAATTGAATTACAT
131 ACTATAAATTGCAGAAATTGAATTACAT
37172482 AAGCATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGCATTTGGTGAATAATAG
1 AAGCATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGCATTTGGTGAATAATAG
37172547 TAATGAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTC
66 TAATGAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTC
37172612 ACTATAAATTGCAGAAATTGAATTA
131 ACTATAAATTGCAGAAATTGAATTA
37172637 GAGGCTTAAT
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
158 154 1.00
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (158 bp):
AAGCATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGCATTTGGTGAATAATAG
TAATGAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTC
ACTATAAATTGCAGAAATTGAATTACAT
Found at i:37177050 original size:71 final size:71
Alignment explanation
Indices: 37176966--37177129 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37176956 CGATTTGTCT
37176966 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37177031 CTTTCA
66 CTTTCA
37177037 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37177102 CTTTCA
66 CTTTCA
37177108 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
37177130 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:37177167 original size:71 final size:70
Alignment explanation
Indices: 37176966--37177163 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
37176956 CGATTTGTCT
* * * *
37176966 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37177031 CTTTCA
65 CTTTCA
* * * *
37177037 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37177102 CTTTCA
65 CTTTCA
* *
37177108 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
37177164 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:37184615 original size:71 final size:71
Alignment explanation
Indices: 37184531--37184694 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37184521 CGATTTGTCT
37184531 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37184596 CTTTCA
66 CTTTCA
37184602 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37184667 CTTTCA
66 CTTTCA
37184673 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
37184695 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:37184732 original size:71 final size:70
Alignment explanation
Indices: 37184531--37184728 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
37184521 CGATTTGTCT
* * * *
37184531 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37184596 CTTTCA
65 CTTTCA
* * * *
37184602 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37184667 CTTTCA
65 CTTTCA
* *
37184673 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
37184729 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:37199599 original size:40 final size:39
Alignment explanation
Indices: 37199554--37199683 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
37199544 CGGAATATAA
37199554 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
37199594 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
37199634 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
37199674 CCGGATATAA
1 CCGGATATAA
37199684 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:37199698 original size:40 final size:40
Alignment explanation
Indices: 37199570--37199721 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
37199560 ATAACCATGT
* * *
37199570 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
37199610 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
37199650 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
37199690 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
37199722 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:37199704 original size:80 final size:80
Alignment explanation
Indices: 37199570--37199719 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
37199560 ATAACCATGT
*
37199570 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
37199634 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
37199650 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
37199713 CCCGGAT
64 CCCGGAT
37199720 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:37203285 original size:16 final size:15
Alignment explanation
Indices: 37203261--37203290 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
37203251 AACTATTTTA
37203261 TTACAAATTTCACTC
1 TTACAAATTTCACTC
37203276 TTACATAATTTCACT
1 TTACA-AATTTCACT
37203291 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:37203548 original size:49 final size:49
Alignment explanation
Indices: 37203495--37203679 Score: 172
Period size: 51 Copynumber: 3.7 Consensus size: 49
37203485 AAGTTATCTA
*
37203495 GTACACATAGTAGCCTACACTTAGTACTACACATGTGACCAACAATCCT
1 GTACACATAGTAGCCTACACTTAGTACTACACACGTGACCAACAATCCT
* * * * *** **
37203544 GTACACGTAGTAGCCTACACTTAGAACTACACACATGATCGAAGTTGTCGG
1 GTACACATAGTAGCCTACACTTAGTACTACACACGTGA-CCAA-CAATCCT
** * *
37203595 GTACACATAGTAGCCTGTACTTAGTACTACACACGTGACCTAAAACCATCTT
1 GTACACATAGTAGCCTACACTTAGTACTACACACGTGACC---AACAATCCT
** *
37203647 AAACACATAGTAGCCTACACATAGTACTACACA
1 GTACACATAGTAGCCTACACTTAGTACTACACA
37203680 TGTGTTCTCA
Statistics
Matches: 105, Mismatches: 26, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
49 34 0.32
50 4 0.04
51 35 0.33
52 30 0.29
53 2 0.02
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (49 bp):
GTACACATAGTAGCCTACACTTAGTACTACACACGTGACCAACAATCCT
Found at i:37212412 original size:50 final size:49
Alignment explanation
Indices: 37212249--37212473 Score: 288
Period size: 49 Copynumber: 4.5 Consensus size: 49
37212239 TACGCACGCA
* * *
37212249 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
*
37212298 TAGTAGCCTGCACTTAGGACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * * *
37212347 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * * *
37212397 TAGTAGCCTACACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
37212448 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
37212474 TGCGACCTCA
Statistics
Matches: 153, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
49 77 0.50
50 41 0.27
51 34 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:37212481 original size:101 final size:99
Alignment explanation
Indices: 37212244--37212481 Score: 316
Period size: 101 Copynumber: 2.4 Consensus size: 99
37212234 TCTGGTACGC
* ** * *
37212244 ACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-AATTATCCGGTACACGTAGTAGCCTG
1 ACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACGTAGTAGCCTA
37212308 CACTTAGGACTACACACGTGACCAATTATCCGGT
66 CACTTAGGACTACACACGTGACCAATTATCCGGT
* * * * * *
37212342 ACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACTTAGTAGCCTA
1 ACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACGTAGTAGCCTA
* * * *
37212407 CACTTAGTACTACACACGTGATCACAGTTTTCGGGT
66 CACTTAGGACTACACACGTGA-C-CAATTATCCGGT
37212443 ACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 ACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
37212482 CACAATAGAT
Statistics
Matches: 118, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
98 33 0.28
99 40 0.34
100 1 0.01
101 44 0.37
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (99 bp):
ACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACGTAGTAGCCTA
CACTTAGGACTACACACGTGACCAATTATCCGGT
Found at i:37221866 original size:32 final size:32
Alignment explanation
Indices: 37221830--37221894 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
37221820 GATGGTTCTA
37221830 TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
1 TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
37221862 TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
1 TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
37221894 T
1 T
37221895 GAGGCCGAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (32 bp):
TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
Found at i:37224966 original size:38 final size:38
Alignment explanation
Indices: 37224915--37225429 Score: 743
Period size: 38 Copynumber: 13.6 Consensus size: 38
37224905 ATATTTGATG
* *
37224915 TATATCCGGGTTTTATCCCGCAGGTTTCGTACTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
37224953 TATATCCGGGTTTTATTCCGCAGGCTAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTA-TCC-C--GC-AGGCTTCGTGCTGGTAT
* *
37224996 TATATCCAGG-TTTATCCCGCAGGCTTCCTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
37225033 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* *
37225071 TATATCCGGGTTTTATCCCGCAGCCTTAGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
37225109 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* *
37225147 TATATCCGGGTTTTATCCTGCAGGCTTCGTGCT-G--C
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
*
37225182 TATATCCGGG-TTTATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
37225219 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
*
37225257 TATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
*** * * *
37225295 TATATCTAAGTTTTATCCCGCAGGCTTCATACTGGTGT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* * * *
37225333 TATATTCGGGTTTTATCCCACAGGCTTCATGTTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* *
37225371 TATATTCGGGTTTTATCCCGCAGGCTTCGTGTTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
*
37225409 TATATCCGGGTTTTATTCCGC
1 TATATCCGGGTTTTATCCCGC
37225430 GATTTTATTC
Statistics
Matches: 431, Mismatches: 36, Indels: 20
0.89 0.07 0.04
Matches are distributed among these distances:
34 20 0.05
35 11 0.03
37 36 0.08
38 326 0.76
39 3 0.01
40 2 0.00
41 3 0.01
42 6 0.01
43 24 0.06
ACGTcount: A:0.15, C:0.23, G:0.24, T:0.38
Consensus pattern (38 bp):
TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
Found at i:37225447 original size:51 final size:51
Alignment explanation
Indices: 37225381--37225480 Score: 164
Period size: 51 Copynumber: 2.0 Consensus size: 51
37225371 TATATTCGGG
*
37225381 TTTTATCCCGCAGGCTTCGTGTTGGTATTATATCCGGGTTTTATTCCGCGA
1 TTTTATCCCGCAGGCTTCGTGTTGGTATTATATCCGGGTTTTATCCCGCGA
* * *
37225432 TTTTATTCCGTAGGCTTCGTGTTGGTATTATATCTGGGTTTTATCCCGC
1 TTTTATCCCGCAGGCTTCGTGTTGGTATTATATCCGGGTTTTATCCCGC
37225481 AGGCTTCGTG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.13, C:0.20, G:0.23, T:0.44
Consensus pattern (51 bp):
TTTTATCCCGCAGGCTTCGTGTTGGTATTATATCCGGGTTTTATCCCGCGA
Found at i:37225521 original size:37 final size:37
Alignment explanation
Indices: 37225433--37225580 Score: 181
Period size: 38 Copynumber: 3.9 Consensus size: 37
37225423 ATTCCGCGAT
* * *
37225433 TTTATTCCGTAGGCTTCGTGTTGGTATTATA-TCTGGG
1 TTTATCCCGCAGGCTTCGTGCTGGTATTATATTC-GGG
*
37225470 TTTTATCCCGCAGGCTTCGTGCTAGTATTATATTCGGG
1 -TTTATCCCGCAGGCTTCGTGCTGGTATTATATTCGGG
* * *
37225508 TTTATCCCACAGGCTTCTTGCTGGTATTATATCCGGG
1 TTTATCCCGCAGGCTTCGTGCTGGTATTATATTCGGG
* *
37225545 TTAAATCCCGCAGGCTTAGTGCTGGTATTATATTCG
1 TT-TATCCCGCAGGCTTCGTGCTGGTATTATATTCG
37225581 AGCTTAAAGT
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
37 35 0.37
38 58 0.61
39 2 0.02
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.40
Consensus pattern (37 bp):
TTTATCCCGCAGGCTTCGTGCTGGTATTATATTCGGG
Found at i:37227387 original size:20 final size:21
Alignment explanation
Indices: 37227345--37227387 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
37227335 GAGGTAAAAT
*
37227345 TTATATTAGATTTTACAATTA
1 TTATATTAGATTTTAAAATTA
37227366 TTATA-TAGA-TTTAAAATATA
1 TTATATTAGATTTTAAAAT-TA
37227386 TT
1 TT
37227388 TTATGCTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 7 0.35
20 8 0.40
21 5 0.25
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (21 bp):
TTATATTAGATTTTAAAATTA
Found at i:37231359 original size:27 final size:27
Alignment explanation
Indices: 37231321--37231375 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
37231311 AAATGTGTTT
37231321 ATTTTGATGTTTTATGGTAGAATATGA
1 ATTTTGATGTTTTATGGTAGAATATGA
*
37231348 ATTTTGGTGTTTTATGGTAGAATATGA
1 ATTTTGATGTTTTATGGTAGAATATGA
37231375 A
1 A
37231376 GCTTGGAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (27 bp):
ATTTTGATGTTTTATGGTAGAATATGA
Found at i:37231381 original size:27 final size:27
Alignment explanation
Indices: 37231328--37231381 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
37231318 TTTATTTTGA
**
37231328 TGTTTTATGGTAGAATATGAATTTTGG
1 TGTTTTATGGTAGAATATGAAGCTTGG
37231355 TGTTTTATGGTAGAATATGAAGCTTGG
1 TGTTTTATGGTAGAATATGAAGCTTGG
37231382 AATTGTGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.44
Consensus pattern (27 bp):
TGTTTTATGGTAGAATATGAAGCTTGG
Found at i:37232029 original size:55 final size:53
Alignment explanation
Indices: 37231962--37232104 Score: 171
Period size: 55 Copynumber: 2.7 Consensus size: 53
37231952 ATTAAGGTTT
* *
37231962 AAGGATACCATGTAACACCATGTCAAGACATGGCATTGATGACTTAATATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGACTT--CATAAGG-A
* * * * * *
37232018 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGACTTCATAAGGA
*
37232070 AAGGATACCATGTAAGACCATGTCGAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
37232105 ATGGTAAGTT
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
52 4 0.05
53 32 0.43
55 34 0.46
56 4 0.05
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGACTTCATAAGGA
Found at i:37232086 original size:53 final size:51
Alignment explanation
Indices: 37231962--37232153 Score: 176
Period size: 53 Copynumber: 3.7 Consensus size: 51
37231952 ATTAAGGTTT
* * *
37231962 AAGGATACCATGTAACACCATGTCAAGACATGGCATTGATGACTTAATATAAGG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGA-GT--TATAAGG
* * *
37232016 AAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGG
1 --AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTT-ATAAGG
* * *
37232069 CAAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT-TCAA--
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTAT-AAGG
* * *
37232119 AAGGATACCACGTAAGACCATGACAAGTCATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
37232154 ATGGCAAGGT
Statistics
Matches: 116, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
49 31 0.27
51 1 0.01
52 7 0.06
53 40 0.34
54 1 0.01
55 32 0.28
56 4 0.03
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (51 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTATAAGG
Found at i:37232375 original size:16 final size:16
Alignment explanation
Indices: 37232354--37232384 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37232344 ATAAATTTGA
37232354 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
37232370 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
37232385 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:37234422 original size:47 final size:47
Alignment explanation
Indices: 37234353--37234687 Score: 250
Period size: 49 Copynumber: 7.3 Consensus size: 47
37234343 CTTCGGGACT
* * * *
37234353 TATCACATTTATACACTTTCACATCCATCTCGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* * *
37234400 TATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* * * *
37234447 TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* ** *
37234493 T-T---ATATGTACA-TTCATCACA-TCGGC-CATT----A---GGCCT
1 TATCACATATATACACTT--TCACATTCATCACATTGGCCACTCGGCCC
* * * *
37234528 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* * * *
37234577 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATAT--ACACTTTCACATTCATCACATTGGCCACTCGGCCC
* * * *
37234626 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATAT--ACACTTTCACATTCATCACATTGGCCACTCGGCCC
37234675 TATCACATATATA
1 TATCACATATATA
37234688 TATCTCATAC
Statistics
Matches: 245, Mismatches: 22, Indels: 42
0.79 0.07 0.14
Matches are distributed among these distances:
34 2 0.01
35 2 0.01
36 1 0.00
37 1 0.00
40 5 0.02
41 15 0.06
42 16 0.07
43 5 0.02
45 1 0.00
46 3 0.01
47 87 0.36
49 107 0.44
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
Found at i:37234429 original size:25 final size:25
Alignment explanation
Indices: 37234401--37234479 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
37234391 ACTCGGCCCT
*
37234401 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
37234426 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
* *
37234448 ATCACATATATACACCTTCACATTC
1 ATCACATATATGCACATTCACATTC
37234473 ATCACAT
1 ATCACAT
37234480 CGGCCATTAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 6 0.15
24 5 0.12
25 18 0.45
ACGTcount: A:0.30, C:0.30, G:0.06, T:0.33
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:37234573 original size:49 final size:49
Alignment explanation
Indices: 37234501--37234687 Score: 365
Period size: 49 Copynumber: 3.8 Consensus size: 49
37234491 CCTTATATGT
*
37234501 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
37234550 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
37234599 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
37234648 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
37234688 TATCTCATAC
Statistics
Matches: 137, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 137 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (49 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
Found at i:37234574 original size:83 final size:81
Alignment explanation
Indices: 37234420--37234579 Score: 275
Period size: 83 Copynumber: 2.0 Consensus size: 81
37234410 ATGCACTTTC
* *
37234420 ACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCC
37234485 ATTAGGCCTTATATGT
66 ATTAGGCCTTATATGT
*
37234501 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
1 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACCTTCACATTCATCACATCGG
37234566 CCATTAGGCCTTAT
64 CCATTAGGCCTTAT
37234580 CACATATATA
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
81 31 0.42
83 43 0.58
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (81 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCC
ATTAGGCCTTATATGT
Found at i:37239034 original size:125 final size:126
Alignment explanation
Indices: 37238767--37239273 Score: 618
Period size: 126 Copynumber: 4.1 Consensus size: 126
37238757 GTCAAGCAGG
* * * * *
37238767 AACTACTGTAGAAAAAGAGTGTCCACGTGGGAACTTTTTTTAGCACTTTTG-TGATAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCC
* *
37238831 TGCTTGAAGCA-TTTTTGACACTATTTTTTCAGAACTATCTTCTCAAAATTATTTCTTTATA
66 TGCTTGAAGCAGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTT-TTTAGA
* * * *
37238892 AACTACTATTGAAAAAGAGCGTCCATGTGCGAGCTTTTTTTAGTTCTTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCC
* *
37238957 TGCTTGAAGCACTTTTT-ACACTATTTTTTTAGAACCATCTTCTCAAAATTATTTTTTAGA
66 TGCTTGAAGCAGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTAGA
* * ** * *
37239017 AACTACTGTAGAAAAAGAGTGTCCATGTGAGAGCTTTTTACAGTACTTTTGCTAACAGTACATCC
1 AACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCC
* * * * * * *
37239082 TACTTGAAG-TGTTTCTGACAATATTTTTTCAGAACCGTCTTCTCAAAATAAATTTTTCAGA
66 TGCTTGAAGCAGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAAT-TATTTTTTAGA
* * * *
37239143 AACTACTGTAGAAAAAGAGCATCCATGTGGGAGCTTTTTTTAGTAGTTTTGCTGATAATGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCC
* * *
37239208 TGCTTGAAGC-GTTTTTGATATTATATTTTT-AGAACCA---TCTCAAAATTATTTTTTCAAA
66 TGCTTGAAGCAGTTTTTGACACTAT-TTTTTCAGAACCATCTTCTCAAAATTATTTTTT-AGA
37239266 AACTACTG
1 AACTACTG
37239274 AACAAAAAAA
Statistics
Matches: 327, Mismatches: 48, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
122 6 0.02
123 19 0.06
124 4 0.01
125 141 0.43
126 147 0.45
127 10 0.03
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (126 bp):
AACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCC
TGCTTGAAGCAGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTAGA
Found at i:37239209 original size:251 final size:248
Alignment explanation
Indices: 37238767--37239273 Score: 651
Period size: 251 Copynumber: 2.0 Consensus size: 248
37238757 GTCAAGCAGG
* ** * * *
37238767 AACTACTGTAGAAAAAGAGTGTCCACGTGGGAACTTTTTTTAGCACTTTTGTGATAGTGCATCCT
1 AACTACTGTAGAAAAAGAGTGTCCACGTGAGAACTTTTTACAGCACTTTTGTAACAGTACATCCT
* * * * * * *
37238832 GCTTGAAGCATTTTTGACACTATTTTTTCAGAACTATCTTCTCAAAATTATTTCTTTATAAACTA
66 ACTTGAAGCATTTCTGACAATATTTTTTCAGAACCATCTTCTCAAAATAATTTCTTCAGAAACTA
* * * *
37238897 CTATTGAAAAAGAGCGTCCATGTGCGAGCTTTTTTTAGTTCTTTTGCTGACAGTGCATCCTGCTT
131 CTATAGAAAAAGAGCATCCATGTGCGAGCTTTTTTTAGTACTTTTGCTGACAATGCATCCTGCTT
* *
37238962 GAAGCACTTTTT-ACACTATTTTTTTAGAACCATCTTCTCAAAATTATTTTTT-AGA
196 GAAGC-CTTTTTGACACTATATTTTTAGAACCA---TCTCAAAATTATTTTTTCAAA
* * *
37239017 AACTACTGTAGAAAAAGAGTGTCCATGTGAGAGCTTTTTACAGTACTTTTGCTAACAGTACATCC
1 AACTACTGTAGAAAAAGAGTGTCCACGTGAGAACTTTTTACAGCACTTTTG-TAACAGTACATCC
** *
37239082 TACTTGAAGTGTTTCTGACAATATTTTTTCAGAACCGTCTTCTCAAAATAAATTT-TTCAGAAAC
65 TACTTGAAGCATTTCTGACAATATTTTTTCAGAACCATCTTCTCAAAAT-AATTTCTTCAGAAAC
* * * *
37239146 TACTGTAGAAAAAGAGCATCCATGTGGGAGCTTTTTTTAGTAGTTTTGCTGATAATGCATCCTGC
129 TACTATAGAAAAAGAGCATCCATGTGCGAGCTTTTTTTAGTACTTTTGCTGACAATGCATCCTGC
* * *
37239211 TTGAAGCGTTTTTGATATTATATTTTTAGAACCATCTCAAAATTATTTTTTCAAA
194 TTGAAGCCTTTTTGACACTATATTTTTAGAACCATCTCAAAATTATTTTTTCAAA
37239266 AACTACTG
1 AACTACTG
37239274 AACAAAAAAA
Statistics
Matches: 221, Mismatches: 32, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
248 17 0.08
249 10 0.05
250 50 0.23
251 140 0.63
252 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (248 bp):
AACTACTGTAGAAAAAGAGTGTCCACGTGAGAACTTTTTACAGCACTTTTGTAACAGTACATCCT
ACTTGAAGCATTTCTGACAATATTTTTTCAGAACCATCTTCTCAAAATAATTTCTTCAGAAACTA
CTATAGAAAAAGAGCATCCATGTGCGAGCTTTTTTTAGTACTTTTGCTGACAATGCATCCTGCTT
GAAGCCTTTTTGACACTATATTTTTAGAACCATCTCAAAATTATTTTTTCAAA
Found at i:37240886 original size:43 final size:42
Alignment explanation
Indices: 37240756--37240914 Score: 196
Period size: 42 Copynumber: 3.8 Consensus size: 42
37240746 TTAGGGTTAC
*
37240756 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCTATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* *
37240798 TGAGAGTT-TGTGTAAGACCATATCTGGGATATGACATCGATA
1 TGAGA-TTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * * *
37240840 TGAGACTT-CGTGTAAGACCTTAGCTAGGCTATTGGCATCGATA
1 TGAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* *
37240883 TGAGATTACATGTAAGACCATATCTCGGATAT
1 TGAGATTACGTGTAAGACCATATCTGGGATAT
37240915 AGGATTGGTA
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
42 64 0.65
43 35 0.35
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:37240897 original size:85 final size:84
Alignment explanation
Indices: 37240756--37240914 Score: 205
Period size: 85 Copynumber: 1.9 Consensus size: 84
37240746 TTAGGGTTAC
* * * **
37240756 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCTATATGAGAGTTTGTGTAAGACCATAT
1 TGAGATTACGTGTAAGACCATAGCTAGGATATGGCATCGATATGAGAGTTCATGTAAGACCATAT
*
37240821 CTGGGATATGACATCGATA
66 CTCGGATATGACATCGATA
* *
37240840 TGAGACTT-CGTGTAAGACCTTAGCTAGGCTATTGGCATCGATATGAGA-TTACATGTAAGACCA
1 TGAGA-TTACGTGTAAGACCATAGCTAGGATA-TGGCATCGATATGAGAGTT-CATGTAAGACCA
37240903 TATCTCGGATAT
63 TATCTCGGATAT
37240915 AGGATTGGTA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
84 26 0.41
85 38 0.59
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (84 bp):
TGAGATTACGTGTAAGACCATAGCTAGGATATGGCATCGATATGAGAGTTCATGTAAGACCATAT
CTCGGATATGACATCGATA
Found at i:37242602 original size:29 final size:29
Alignment explanation
Indices: 37242560--37242653 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
37242550 CACGGGCGTG
*
37242560 TGTGACCACACGCCCTGCCCACATAGGCA
1 TGTGACCACACGCCCTGCCCGCATAGGCA
37242589 TGTGACCACACGCCCTGCCCGCATAGGCA
1 TGTGACCACACGCCCTGCCCGCATAGGCA
37242618 TGTGACCACACGCCCTGCCCGCATAGGCA
1 TGTGACCACACGCCCTGCCCGCATAGGCA
37242647 TGTGACC
1 TGTGACC
37242654 CCTGTTTTAG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.21, C:0.40, G:0.23, T:0.15
Consensus pattern (29 bp):
TGTGACCACACGCCCTGCCCGCATAGGCA
Found at i:37243105 original size:42 final size:43
Alignment explanation
Indices: 37243058--37243142 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 43
37243048 TGGTAAGTAA
*
37243058 GATTTAAAGTGGCCCATTTTCATAAATAAAGTAGG-AATGGGC
1 GATTTAAAGTGACCCATTTTCATAAATAAAGTAGGAAATGGGC
*
37243100 GATTTAAAGTGACCCATTTTCGTAAATAAAGTAGGAAATGGGC
1 GATTTAAAGTGACCCATTTTCATAAATAAAGTAGGAAATGGGC
37243143 CTTTTTTAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 33 0.82
43 7 0.17
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (43 bp):
GATTTAAAGTGACCCATTTTCATAAATAAAGTAGGAAATGGGC
Found at i:37244534 original size:27 final size:27
Alignment explanation
Indices: 37244504--37244572 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
37244494 ACAATTTTAC
* *
37244504 TTGGGTCTCAGCCC-TCATCAAAATCAA
1 TTGGGCCT-AGCCCATCAACAAAATCAA
*
37244531 TTGGGCCTAGCCCATTAACAAAATCAA
1 TTGGGCCTAGCCCATCAACAAAATCAA
*
37244558 GTGGGCCTAAGCCCA
1 TTGGGCCT-AGCCCA
37244573 ATATGGAATC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 5 0.14
27 25 0.69
28 6 0.17
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (27 bp):
TTGGGCCTAGCCCATCAACAAAATCAA
Found at i:37245042 original size:27 final size:27
Alignment explanation
Indices: 37245000--37245061 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
37244990 GAACATATTT
37245000 GTCATTTTACCATACAGGGATATTACG
1 GTCATTTTACCATACAGGGATATTACG
* * *
37245027 GTCATTTTGCCCTACAGGGGTATTACG
1 GTCATTTTACCATACAGGGATATTACG
37245054 GTCATTTT
1 GTCATTTT
37245062 CCAAACTGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGATATTACG
Found at i:37245073 original size:27 final size:27
Alignment explanation
Indices: 37245000--37245077 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
37244990 GAACATATTT
* * *
37245000 GTCATTTTACCATACAGGGATATTACG
1 GTCATTTTGCCAAACAGGGGTATTACG
**
37245027 GTCATTTTGCCCTACAGGGGTATTACG
1 GTCATTTTGCCAAACAGGGGTATTACG
*
37245054 GTCATTTT-CCAAACTGGGGGTATT
1 GTCATTTTGCCAAAC-AGGGGTATT
37245078 TATGACCCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
26 4 0.09
27 40 0.91
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (27 bp):
GTCATTTTGCCAAACAGGGGTATTACG
Found at i:37250953 original size:40 final size:40
Alignment explanation
Indices: 37250857--37251047 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
37250847 CGAATGTTGT
* * * * * *
37250857 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
37250898 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
37250938 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
37250978 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
37251018 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
37251048 ATCACTATAA
Statistics
Matches: 133, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 109 0.82
41 24 0.18
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:37251008 original size:80 final size:80
Alignment explanation
Indices: 37250857--37251089 Score: 261
Period size: 80 Copynumber: 2.9 Consensus size: 80
37250847 CGAATGTTGT
* * * * * *
37250857 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
37250922 GTGCGAGTTACCAAAA
65 GTGCGAGTTACCAAAA
* * *
37250938 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTCG
* *
37251003 TGCGAGTTACTAAAT
66 TGCGAGTTACCAAAA
* * * * * * * *
37251018 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAGACAATC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAA-GTCCCGAAGGCATTC
*
37251082 GAGCGAGT
65 GTGCGAGT
37251090 CGCTATATCC
Statistics
Matches: 129, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
79 2 0.02
80 101 0.78
81 26 0.20
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAAA
Found at i:37251062 original size:40 final size:39
Alignment explanation
Indices: 37250857--37251089 Score: 211
Period size: 40 Copynumber: 5.8 Consensus size: 39
37250847 CGAATGTTGT
** * *
37250857 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA
* * *
37250897 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* * *
37250938 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
*
37250978 CCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTAAA
* * *
37251017 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-AA
* * *
37251058 CCGGGC-AATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAA-GTCCCGAAGGCAATTGTGCGAGT
37251090 CGCTATATCC
Statistics
Matches: 167, Mismatches: 17, Indels: 17
0.83 0.08 0.08
Matches are distributed among these distances:
39 8 0.05
40 125 0.75
41 34 0.20
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:37251071 original size:120 final size:121
Alignment explanation
Indices: 37250857--37251075 Score: 300
Period size: 120 Copynumber: 1.8 Consensus size: 121
37250847 CGAATGTTGT
* * *
37250857 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * *
37250922 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
37250978 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
37251041 TGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAAG
37251076 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
119 3 0.04
120 57 0.67
121 25 0.29
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:37254729 original size:47 final size:47
Alignment explanation
Indices: 37254658--37254911 Score: 364
Period size: 47 Copynumber: 5.3 Consensus size: 47
37254648 CCCTTCGGGA
* * * * * *
37254658 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
37254705 CCTATCACATATATGCACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37254752 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37254799 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37254848 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
37254897 CTTATCACATATATA
1 CTTATCACATATATA
37254912 TATCTCATAC
Statistics
Matches: 189, Mismatches: 14, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
47 96 0.51
49 93 0.49
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37254832 original size:49 final size:49
Alignment explanation
Indices: 37254658--37254913 Score: 362
Period size: 49 Copynumber: 5.3 Consensus size: 49
37254648 CCCTTCGGGA
* * * * *
37254658 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
37254705 CCTATCAC--ATATATGCACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37254752 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37254799 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37254848 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37254897 CTTATCACATATATATA
1 CTTATCACATATATATA
37254914 TCTCATACAT
Statistics
Matches: 190, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.01
47 87 0.46
49 102 0.54
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37254855 original size:96 final size:96
Alignment explanation
Indices: 37254658--37254913 Score: 372
Period size: 96 Copynumber: 2.7 Consensus size: 96
37254648 CCCTTCGGGA
* * * * * * * * *
37254658 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATGC
1 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
37254721 ACTTTCACATTCATCACATTGGTCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37254752 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
37254817 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37254848 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
37254913 A
64 A
37254914 TCTCATACAT
Statistics
Matches: 146, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
94 47 0.32
96 53 0.36
97 1 0.01
98 45 0.31
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37261997 original size:34 final size:35
Alignment explanation
Indices: 37261949--37262033 Score: 118
Period size: 34 Copynumber: 2.5 Consensus size: 35
37261939 GCTAATACAT
*
37261949 TCTAGGCCTAAGCCCATATTAGTAACAGT-AACAG
1 TCTAGGCCTAAGCCCATATTAATAACAGTAAACAG
* * * *
37261983 TCTGGGCCTTAGCCCATTTTAATATCAGTAAACAG
1 TCTAGGCCTAAGCCCATATTAATAACAGTAAACAG
37262018 TCTAGGCCTAAGCCCA
1 TCTAGGCCTAAGCCCA
37262034 CCTCAATACA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
34 24 0.56
35 19 0.44
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (35 bp):
TCTAGGCCTAAGCCCATATTAATAACAGTAAACAG
Found at i:37262260 original size:21 final size:21
Alignment explanation
Indices: 37262236--37262307 Score: 56
Period size: 23 Copynumber: 3.3 Consensus size: 21
37262226 GCGGCACTAA
37262236 CAGTATTTGCAGTAGAGCTGC
1 CAGTATTTGCAGTAGAGCTGC
* ***
37262257 CAGTATAATTGGC-TTAGAGCCAT
1 CAGTAT--TT-GCAGTAGAGCTGC
*
37262280 CAGTGATTTGCAGCAGAGCTGC
1 CAGT-ATTTGCAGTAGAGCTGC
37262302 CAGTAT
1 CAGTAT
37262308 AGTACACTTC
Statistics
Matches: 37, Mismatches: 9, Indels: 10
0.66 0.16 0.18
Matches are distributed among these distances:
21 10 0.27
22 11 0.30
23 12 0.32
24 4 0.11
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (21 bp):
CAGTATTTGCAGTAGAGCTGC
Found at i:37262483 original size:27 final size:26
Alignment explanation
Indices: 37262444--37262526 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
37262434 CATCACATAG
*
37262444 GGGCAAAACAGTCATTTTTCCTCACAA
1 GGGCAAAATAGTCATTTTTCC-CACAA
*
37262471 GGGCAAAATAGTCATTTTGTACCACAA
1 GGGCAAAATAGTCATTTT-TCCCACAA
* *
37262498 GGGAAAAATAGTCATTTTACCCACAA
1 GGGCAAAATAGTCATTTTTCCCACAA
37262524 GGG
1 GGG
37262527 AAATTACAGT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.18
27 39 0.78
28 2 0.04
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (26 bp):
GGGCAAAATAGTCATTTTTCCCACAA
Found at i:37262537 original size:27 final size:25
Alignment explanation
Indices: 37262448--37262545 Score: 90
Period size: 27 Copynumber: 3.7 Consensus size: 25
37262438 ACATAGGGGC
*
37262448 AAAACAGTCATTTTTCCTCACAAGGG
1 AAAACAGTCATTTTACC-CACAAGGG
*
37262474 CAAAATAGTCATTTTGTA-CCACAAGGG
1 -AAAACAGTCA-TTT-TACCCACAAGGG
*
37262501 AAAAATAGTCATTTTACCCACAAGGG
1 -AAAACAGTCATTTTACCCACAAGGG
*
37262527 AAATTACAGTCATTATACC
1 AAA--ACAGTCATTTTACC
37262546 TTATAGGGAT
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
25 5 0.08
26 12 0.20
27 39 0.64
28 4 0.07
29 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (25 bp):
AAAACAGTCATTTTACCCACAAGGG
Found at i:37262553 original size:27 final size:27
Alignment explanation
Indices: 37262507--37262600 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 27
37262497 AGGGAAAAAT
* * *
37262507 AGTCATTTTACCC-ACAAGGGAAATTAC
1 AGTCATTTTACCCTA-TAGGGATATTTC
* *
37262534 AGTCATTATACCTTATAGGGATATTTC
1 AGTCATTTTACCCTATAGGGATATTTC
* * *
37262561 GGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATAGGGATATTTC
37262588 AGTCATTTTACCC
1 AGTCATTTTACCC
37262601 GATTAAAGGT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
AGTCATTTTACCCTATAGGGATATTTC
Found at i:37269166 original size:40 final size:40
Alignment explanation
Indices: 37269092--37269310 Score: 345
Period size: 40 Copynumber: 5.5 Consensus size: 40
37269082 AACCCAAGTA
* *
37269092 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
37269131 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
37269171 CCTTTGGGACTTAGCTCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
37269211 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
37269251 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
37269290 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
37269311 GTCATCCGAA
Statistics
Matches: 167, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 36 0.22
40 130 0.78
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:37281355 original size:30 final size:30
Alignment explanation
Indices: 37281319--37281381 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
37281309 ACTTATTTTA
37281319 TTGTTAATTTTGCTATTATTTT-GAAGGCAT
1 TTGTTAATTTTGCTATTATTTTAG-AGGCAT
*
37281349 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGCTATTATTTTAGAGGCAT
37281379 TTG
1 TTG
37281382 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 30 0.97
31 1 0.03
ACGTcount: A:0.22, C:0.05, G:0.17, T:0.56
Consensus pattern (30 bp):
TTGTTAATTTTGCTATTATTTTAGAGGCAT
Found at i:37282794 original size:19 final size:19
Alignment explanation
Indices: 37282767--37282836 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 19
37282757 TGTGATAACA
37282767 AATACTAAAATTTTTAATT
1 AATACTAAAATTTTTAATT
* *
37282786 AATATTAAAATTTTTAATC
1 AATACTAAAATTTTTAATT
* * * * *
37282805 GAGACCAATATTTCTAATT
1 AATACTAAAATTTTTAATT
37282824 AATACTAAAATTT
1 AATACTAAAATTT
37282837 CGAGTACAAT
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.43
Consensus pattern (19 bp):
AATACTAAAATTTTTAATT
Found at i:37283208 original size:16 final size:16
Alignment explanation
Indices: 37283172--37283202 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37283162 AACCATTTAA
*
37283172 AAAATTATAAAAATTG
1 AAAATTATAAAAAATG
37283188 AAAATTATAAAAAAT
1 AAAATTATAAAAAAT
37283203 ATAAATAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
AAAATTATAAAAAATG
Found at i:37286480 original size:2 final size:2
Alignment explanation
Indices: 37286473--37286501 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37286463 AAAGTATGTT
37286473 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37286502 GAATACTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37289762 original size:43 final size:42
Alignment explanation
Indices: 37289693--37289849 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
37289683 AGCTCGTACA
* * *
37289693 ATGCCAACGTCCCATATGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATA-CG
* * * *
37289736 ATGCTACTGTCCCAGACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAATACG
*
37289778 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAATTATAAGT-CG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGT-AATCA-AA-TACG
* * *
37289822 ATGCCAACGTTCTAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
37289850 CGATAACACA
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 35 0.37
44 30 0.32
45 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATACG
Found at i:37297398 original size:42 final size:42
Alignment explanation
Indices: 37297317--37297457 Score: 151
Period size: 44 Copynumber: 3.3 Consensus size: 42
37297307 GTCCAGACAT
* * *
37297317 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAATAG-
1 GGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAAAT-GC
*
37297360 GGTCTTACACGGAATCAAATACGATGCCAATGTCCCAAATGC
1 GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAAATGC
* * * *
37297402 GGTCTTACACATAAATCATAAGT-CGATGCCAACGTCCCAAACGT
1 GGTCTTACAC-GAAATCA-AA-TACGATGCCAATGTCCCAAATGC
37297446 GGTCTTACACGA
1 GGTCTTACACGA
37297458 TAACACATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
41 1 0.01
42 28 0.33
43 25 0.29
44 30 0.35
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAAATGC
Found at i:37300840 original size:21 final size:21
Alignment explanation
Indices: 37300814--37300877 Score: 110
Period size: 21 Copynumber: 3.0 Consensus size: 21
37300804 ACTGAATGGA
37300814 TCAGCTCTTACGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
*
37300835 TCAGCTCTTATGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
*
37300856 TCAGCTCATACGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
37300877 T
1 T
37300878 GACTTATTCG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.16, C:0.27, G:0.19, T:0.39
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTGT
Found at i:37301316 original size:77 final size:77
Alignment explanation
Indices: 37301220--37301376 Score: 314
Period size: 77 Copynumber: 2.0 Consensus size: 77
37301210 TAGCACCCAA
37301220 GTCACACTATCCAGCTTATCTCGGTAGTTTTTGAAATGTTAAATACGGTTTATATGGCATGTATA
1 GTCACACTATCCAGCTTATCTCGGTAGTTTTTGAAATGTTAAATACGGTTTATATGGCATGTATA
37301285 GGCTTTTGTATG
66 GGCTTTTGTATG
37301297 GTCACACTATCCAGCTTATCTCGGTAGTTTTTGAAATGTTAAATACGGTTTATATGGCATGTATA
1 GTCACACTATCCAGCTTATCTCGGTAGTTTTTGAAATGTTAAATACGGTTTATATGGCATGTATA
37301362 GGCTTTTGTATG
66 GGCTTTTGTATG
37301374 GTC
1 GTC
37301377 TTGGTCAAAG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 80 1.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (77 bp):
GTCACACTATCCAGCTTATCTCGGTAGTTTTTGAAATGTTAAATACGGTTTATATGGCATGTATA
GGCTTTTGTATG
Found at i:37306154 original size:28 final size:28
Alignment explanation
Indices: 37306085--37306185 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
37306075 GACAAGATTG
* * * *
37306085 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
37306115 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37306143 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
37306172 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
37306186 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37310038 original size:43 final size:42
Alignment explanation
Indices: 37309886--37310040 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 42
37309876 TTTCGTTATG
*
37309886 TGATTTCATGTAAGACCACGTCTAGGACATTGGCATCGACT-TC
1 TGATTTCATGTAAGACCACGTCTGGGACA-TGGCATCGA-TATC
* *
37309929 TG-TTTTATGTATAAGACCATGTCTGGGACATCGGCATC-ATATC
1 TGATTTCATG--TAAGACCACGTCTGGGACAT-GGCATCGATATC
*
37309972 TGATTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATGAT-
1 TGATTTCATGTAAGACCAC-GTCTGGGACA-TGGCATCGAT-ATC
*
37310015 TGATTACATGTAAGACCACGTCTGGG
1 TGATTTCATGTAAGACCACGTCTGGG
37310041 TTGTTGGCAT
Statistics
Matches: 94, Mismatches: 8, Indels: 20
0.77 0.07 0.16
Matches are distributed among these distances:
42 30 0.32
43 33 0.35
44 31 0.33
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (42 bp):
TGATTTCATGTAAGACCACGTCTGGGACATGGCATCGATATC
Found at i:37312249 original size:40 final size:40
Alignment explanation
Indices: 37312190--37312407 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
37312180 CGGATGTTAA
*
37312190 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* * *
37312230 CCGGGCTAAGCCCCAAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
37312270 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* * *
37312310 CCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
*
37312350 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
*
37312390 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37312408 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:37315203 original size:225 final size:226
Alignment explanation
Indices: 37314799--37315251 Score: 667
Period size: 225 Copynumber: 2.0 Consensus size: 226
37314789 GTTGAGAACG
**
37314799 AAACCCCTATTTCTACAACAAATTCGAGAATTGCAAGATGATGATCTGAAGTTGATGTTCAAATG
1 AAACCCCTATTTCTACAACAAATTCGAGAATTGCAAGATGATGATCCAAAGTTGATGTTCAAATG
*
37314864 ACAGATAGTTCAGAATAATTTGAGTTCAGAGGAGAGGACAGTGTTGATGATAGTGGTACATTGCG
66 ACAGATAGTTCAGAATAATTTGAGTTC----GAGAGGACAGTGTTGATGATAGTGGTACATTACG
** *
37314929 TTATCGTTATAGAATTTGTGTTTCAAATAATTTAGATTTGAAAAATGATATTCTTTCTGAAGCTC
127 TTATCGCGATAGAATTTGTGTTTCAAATAATTTAGATTTGAAAAATGATATACTTTCTGAAGCTC
* * * *
37314994 ACAGTAGCACGTACTTTATTCATCCGGGTAGCACA
192 ACAATAGCACATACTCTATTCATCCAGGTAGCACA
* * *
37315029 AAACCCCTATTTCTACAACGAATTCGAGAATTTCAAGATGATGATCCAAAGTTCG-TGTTGAAAT
1 AAACCCCTATTTCTACAACAAATTCGAGAATTGCAAGATGATGATCCAAAGTT-GATGTTCAAAT
** * *
37315093 GGTAGATAGTTCAGAATAATTTGAGTTC-AGAGTACAGTGTTGATGATAGTGGTACATTATGTTA
65 GACAGATAGTTCAGAATAATTTGAGTTCGAGAGGACAGTGTTGATGATAGTGGTACATTACGTTA
* *
37315157 TCGCGATAGAATTTGTGTTTCGAATAATTTAGATTTGAAAAATGATATACTTTCTGAAGTTCACA
130 TCGCGATAGAATTTGTGTTTCAAATAATTTAGATTTGAAAAATGATATACTTTCTGAAGCTCACA
*
37315222 ATAGCTCATACTCTATTCATCCAGGTAGCA
195 ATAGCACATACTCTATTCATCCAGGTAGCA
37315252 TGAAGATGTA
Statistics
Matches: 202, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
225 118 0.58
230 83 0.41
231 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (226 bp):
AAACCCCTATTTCTACAACAAATTCGAGAATTGCAAGATGATGATCCAAAGTTGATGTTCAAATG
ACAGATAGTTCAGAATAATTTGAGTTCGAGAGGACAGTGTTGATGATAGTGGTACATTACGTTAT
CGCGATAGAATTTGTGTTTCAAATAATTTAGATTTGAAAAATGATATACTTTCTGAAGCTCACAA
TAGCACATACTCTATTCATCCAGGTAGCACA
Found at i:37325325 original size:26 final size:28
Alignment explanation
Indices: 37325288--37325341 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
37325278 ATCATAGCAC
37325288 AAATCAGTCA-TTTACCCTCA-AGGGGTA
1 AAATCAGTCATTTTACCCT-ATAGGGGTA
37325315 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTCATTTTACCCTATAGGGGTA
37325342 TTTTGGTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTATAGGGGTA
Found at i:37325612 original size:17 final size:19
Alignment explanation
Indices: 37325590--37325629 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
37325580 CCGTGTGGTA
37325590 CCCACAAG-CCCA-TTGGG
1 CCCACAAGACCCATTTGGG
*
37325607 CCCACAAGACCGATTTGGG
1 CCCACAAGACCCATTTGGG
37325626 CCCA
1 CCCA
37325630 TCATGGCCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 3 0.15
19 9 0.45
ACGTcount: A:0.25, C:0.40, G:0.23, T:0.12
Consensus pattern (19 bp):
CCCACAAGACCCATTTGGG
Found at i:37331650 original size:6 final size:6
Alignment explanation
Indices: 37331634--37331699 Score: 123
Period size: 6 Copynumber: 11.0 Consensus size: 6
37331624 TTGTTTTATC
*
37331634 TTATTT ATATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
37331682 TTATTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT
37331700 ATCTTTTATG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 58 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTATTT
Found at i:37332701 original size:11 final size:12
Alignment explanation
Indices: 37332685--37332714 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
37332675 TATTTTTCTC
37332685 AAAAAAA-TGAA
1 AAAAAAAGTGAA
37332696 AAAAAAAGTGAA
1 AAAAAAAGTGAA
37332708 AAAAAAA
1 AAAAAAA
37332715 CATTTATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (12 bp):
AAAAAAAGTGAA
Found at i:37333545 original size:20 final size:20
Alignment explanation
Indices: 37333520--37333557 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
37333510 GTTTTTAGGA
37333520 TCCACACGGCCTGGGCATTT
1 TCCACACGGCCTGGGCATTT
*
37333540 TCCACACGGGCTGGGCAT
1 TCCACACGGCCTGGGCAT
37333558 ACGCCCATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.34, G:0.29, T:0.21
Consensus pattern (20 bp):
TCCACACGGCCTGGGCATTT
Found at i:37335617 original size:25 final size:25
Alignment explanation
Indices: 37335588--37335638 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
37335578 ATTATCAACA
*
37335588 TGATGTTTTAATGATTGTTTGATTT
1 TGATGTTTTAATGATTATTTGATTT
37335613 TGATGTTTTAATGATTATTTGATTT
1 TGATGTTTTAATGATTATTTGATTT
37335638 T
1 T
37335639 CATACTCTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.00, G:0.18, T:0.61
Consensus pattern (25 bp):
TGATGTTTTAATGATTATTTGATTT
Found at i:37340340 original size:18 final size:18
Alignment explanation
Indices: 37340317--37340353 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
37340307 TTGCCATCGT
*
37340317 CAGGAAGACACTTGAAAC
1 CAGGAAAACACTTGAAAC
37340335 CAGGAAAACACTTGAAAC
1 CAGGAAAACACTTGAAAC
37340353 C
1 C
37340354 TTTATGATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (18 bp):
CAGGAAAACACTTGAAAC
Found at i:37342250 original size:24 final size:24
Alignment explanation
Indices: 37342218--37342302 Score: 118
Period size: 24 Copynumber: 3.5 Consensus size: 24
37342208 AATCTCAAAT
*
37342218 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTAATATG
37342242 GCACTATGTGTGCGATTTAATATG
1 GCACTATGTGTGCGATTTAATATG
** *
37342266 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTAATATG
37342290 GCACTATGTGTGC
1 GCACTATGTGTGC
37342303 AACATTCAGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
24 50 0.89
25 6 0.11
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTAATATG
Found at i:37343834 original size:21 final size:21
Alignment explanation
Indices: 37343809--37343851 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
37343799 TCAAAGCTTC
37343809 TGACTTACTCTTGAGAAAGTA
1 TGACTTACTCTTGAGAAAGTA
37343830 TGACTTACTCTTGAGAAAGTA
1 TGACTTACTCTTGAGAAAGTA
37343851 T
1 T
37343852 AACCATGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.35
Consensus pattern (21 bp):
TGACTTACTCTTGAGAAAGTA
Found at i:37349357 original size:16 final size:17
Alignment explanation
Indices: 37349329--37349362 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
37349319 TGGATGTTCA
37349329 TCAGTCTTATTCTTTTG
1 TCAGTCTTATTCTTTTG
37349346 TCAGTC-TATTCTTTTG
1 TCAGTCTTATTCTTTTG
37349362 T
1 T
37349363 TTTTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.12, C:0.18, G:0.12, T:0.59
Consensus pattern (17 bp):
TCAGTCTTATTCTTTTG
Found at i:37350072 original size:29 final size:29
Alignment explanation
Indices: 37350028--37350085 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
37350018 TGTTAGTGAA
* *
37350028 CTTACCTGTGACCTAAATTTCTCAATCTT
1 CTTACCCGTGAACTAAATTTCTCAATCTT
37350057 CTTACCCGTGAACTAAATTTCTCAATCTT
1 CTTACCCGTGAACTAAATTTCTCAATCTT
37350086 GTTTTTTACC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.28, G:0.07, T:0.40
Consensus pattern (29 bp):
CTTACCCGTGAACTAAATTTCTCAATCTT
Found at i:37352370 original size:16 final size:17
Alignment explanation
Indices: 37352331--37352370 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
37352321 TTATTAGGAG
*
37352331 ATCTTTAATTAAAAGTC
1 ATCTTTAATTAAAAATC
*
37352348 TTCTTTAATTAAAAAT-
1 ATCTTTAATTAAAAATC
37352364 ATCTTTA
1 ATCTTTA
37352371 TGGTATTACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (17 bp):
ATCTTTAATTAAAAATC
Found at i:37360942 original size:37 final size:37
Alignment explanation
Indices: 37360892--37360965 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
37360882 CATGGTTTAA
37360892 CATTACTTCCTCTTGTTCTTCCATCTCAGTTAAGCTC
1 CATTACTTCCTCTTGTTCTTCCATCTCAGTTAAGCTC
37360929 CATTACTTCCTCTTGTTCTTCCATCTCAGTTAAGCTC
1 CATTACTTCCTCTTGTTCTTCCATCTCAGTTAAGCTC
37360966 ACTCTTCATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.16, C:0.32, G:0.08, T:0.43
Consensus pattern (37 bp):
CATTACTTCCTCTTGTTCTTCCATCTCAGTTAAGCTC
Found at i:37363581 original size:38 final size:38
Alignment explanation
Indices: 37363530--37363602 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
37363520 GTTTATTTCG
37363530 CTCTCTAGCTTAGAATTCAAATGACAATCGGATGCAAA
1 CTCTCTAGCTTAGAATTCAAATGACAATCGGATGCAAA
* *
37363568 CTCTCTAGCTTAGAATTCAAATGACAGTTGGATGC
1 CTCTCTAGCTTAGAATTCAAATGACAATCGGATGC
37363603 TTTGAATAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29
Consensus pattern (38 bp):
CTCTCTAGCTTAGAATTCAAATGACAATCGGATGCAAA
Found at i:37367824 original size:42 final size:42
Alignment explanation
Indices: 37367763--37367845 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
37367753 TTATATTTGG
*
37367763 ATTTAAGGTAACTCAGAAATAACTAAGTTAAGTTTTTTATGT
1 ATTTAAGGGAACTCAGAAATAACTAAGTTAAGTTTTTTATGT
* *
37367805 ATTTAAGGGAACTCGGAAATGACTAAGTTAAGTTTTTTATG
1 ATTTAAGGGAACTCAGAAATAACTAAGTTAAGTTTTTTATG
37367846 AAGTCCAAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (42 bp):
ATTTAAGGGAACTCAGAAATAACTAAGTTAAGTTTTTTATGT
Found at i:37371486 original size:40 final size:40
Alignment explanation
Indices: 37371408--37371591 Score: 239
Period size: 40 Copynumber: 4.5 Consensus size: 40
37371398 ACCCAAGTAT
* *
37371408 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* **
37371447 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
37371487 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
*
37371527 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATGC
*
37371570 CTTCGGGACTTAGCCCGAATAT
1 CTTCGGGACTTAGCCCGGATAT
37371592 CATCCGAATA
Statistics
Matches: 128, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 12 0.09
40 85 0.66
41 1 0.01
43 30 0.23
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:37375664 original size:28 final size:27
Alignment explanation
Indices: 37375601--37375670 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
37375591 ATAGTGAGTC
37375601 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
37375628 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
37375656 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37375671 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:37381592 original size:325 final size:325
Alignment explanation
Indices: 37380996--37381646 Score: 1221
Period size: 325 Copynumber: 2.0 Consensus size: 325
37380986 GTTTAGGTAG
*
37380996 TCATCCAAGTTATAAGTAAGTAATATGAGTTATCGTCTCCATAGAAGCTGTAAAAGCTTAACCAA
1 TCATCCAAGTAATAAGTAAGTAATATGAGTTATCGTCTCCATAGAAGCTGTAAAAGCTTAACCAA
37381061 TTTAATTGCAAAATTATAATTAACAATTTGATGTAAAAAAACTCAATAAATTTAAATAGTGATGA
66 TTTAATTGCAAAATTATAATTAACAATTTGATGTAAAAAAACTCAATAAATTTAAATAGTGATGA
*
37381126 TTAGATTAATTAAATGCAAGAGTGGTCCCTATGCAATTCTTAATCTAAATGTAATTTTACCTAAA
131 TTAGATTAATTAAATGCAAGAGTGATCCCTATGCAATTCTTAATCTAAATGTAATTTTACCTAAA
37381191 TGTATGAATGAGGGCTTTAGCAATAAAAAAAAAATCAACTTTAAATGAGCTAGGATAATTATATT
196 TGTATGAATGAGGGCTTTAGCAATAAAAAAAAAATCAACTTTAAATGAGCTAGGATAATTATATT
* *
37381256 AATTTATTCAATTTTCCTTCATCATGCTAACATGTTCAGAATTACTTCCATGGCAACTCGATCTC
261 AATTAATTCAATTTACCTTCATCATGCTAACATGTTCAGAATTACTTCCATGGCAACTCGATCTC
* **
37381321 TCATCCAAGTAATAAGTAAGTAATATGAGTTATCGTCTCTATAGGGGCTGTAAAAGCTTAACCAA
1 TCATCCAAGTAATAAGTAAGTAATATGAGTTATCGTCTCCATAGAAGCTGTAAAAGCTTAACCAA
*
37381386 TTTAATTGCAAAATTATAATTAACAATTTGATGTAAAAAAACTCAATAAATTTAGATAGTGATGA
66 TTTAATTGCAAAATTATAATTAACAATTTGATGTAAAAAAACTCAATAAATTTAAATAGTGATGA
37381451 TTAGATTAATTAAATGCAAGAGTGATCCCTATGCAATTCTTAATCTAAATGTAATTTTACCTAAA
131 TTAGATTAATTAAATGCAAGAGTGATCCCTATGCAATTCTTAATCTAAATGTAATTTTACCTAAA
*
37381516 TGTATGAATGAGGGCTTTAGCAATAAAAAAACAATCAACTTTAAATGAGCTAGGATAATTATATT
196 TGTATGAATGAGGGCTTTAGCAATAAAAAAAAAATCAACTTTAAATGAGCTAGGATAATTATATT
37381581 AATTAATTCAATTTACCTTCATCATGCTAACATGTTCAGAATTACTTCCATGGCAACTCGATCTC
261 AATTAATTCAATTTACCTTCATCATGCTAACATGTTCAGAATTACTTCCATGGCAACTCGATCTC
37381646 T
1 T
37381647 TATGGGTTTG
Statistics
Matches: 317, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
325 317 1.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (325 bp):
TCATCCAAGTAATAAGTAAGTAATATGAGTTATCGTCTCCATAGAAGCTGTAAAAGCTTAACCAA
TTTAATTGCAAAATTATAATTAACAATTTGATGTAAAAAAACTCAATAAATTTAAATAGTGATGA
TTAGATTAATTAAATGCAAGAGTGATCCCTATGCAATTCTTAATCTAAATGTAATTTTACCTAAA
TGTATGAATGAGGGCTTTAGCAATAAAAAAAAAATCAACTTTAAATGAGCTAGGATAATTATATT
AATTAATTCAATTTACCTTCATCATGCTAACATGTTCAGAATTACTTCCATGGCAACTCGATCTC
Found at i:37392528 original size:46 final size:46
Alignment explanation
Indices: 37392357--37392558 Score: 180
Period size: 46 Copynumber: 4.4 Consensus size: 46
37392347 TTGTGTGGGA
* * *
37392357 TAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGC
1 TAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGA-GATGAGAGC
* ** * * *
37392403 CAGTGTAAGACCATGTCTAGGACATGGCATCAGTATTGAGACGAGTGC
1 TAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCTCGAGATGAGAGC
* * *
37392451 TAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCGAGATGTA-AGC
1 TAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATG-AGAGC
* * *
37392497 TAGTGTAAGACATGTCTAGGACATGCATC-GGCTACGAGATGTG-TC
1 TAGTGTAAGACATGTCTAGGACATGCATCAGCCT-CGAGATGAGAGC
37392542 -AGTGTAAGACCATGTCT
1 TAGTGTAAGA-CATGTCT
37392559 GAGATATGGC
Statistics
Matches: 126, Mismatches: 23, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
44 9 0.07
45 11 0.09
46 56 0.44
47 27 0.21
48 22 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATGAGAGC
Found at i:37408643 original size:2 final size:2
Alignment explanation
Indices: 37408636--37408674 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
37408626 TTTGCTTGTG
37408636 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37408675 GCAAATGGCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:37410236 original size:46 final size:48
Alignment explanation
Indices: 37410084--37410345 Score: 206
Period size: 46 Copynumber: 5.6 Consensus size: 48
37410074 AATGGGTTAT
* * * * *
37410084 TGTAG-GCTAGTGTAAGA-CATGTTTGGCACATGCATCGGCCAC-ATTA
1 TGTAGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-AA
* * * *
37410130 T-AAGAGCCAGTGTAAGACCATGACTGAGACATGGCATCGGCATCGAAA
1 TGTAGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAAA
* * *
37410178 TG-AGTGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGA
1 TGTAGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAAA
* * *
37410224 CGTA-AGCCAGTGTAA-AACATGTCTGGGACATGCATCGG-TTACGAAA
1 TGTAGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAAA
* * * * * *
37410270 TG-ATAGTCAGTGTAAGACCATGTCTAGGACATGGCATC-GACTTGAGA
1 TGTAGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAAA
*
37410317 T-TTGAGCCAGTGTAAGACCATGTCTGGGA
1 TGTAGAGCCAGTGTAAGACCATGTCTGGGA
37410346 TATGGCACTG
Statistics
Matches: 172, Mismatches: 31, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
45 5 0.03
46 71 0.41
47 65 0.38
48 30 0.17
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
TGTAGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAAA
Found at i:37410328 original size:47 final size:46
Alignment explanation
Indices: 37410133--37410352 Score: 189
Period size: 47 Copynumber: 4.7 Consensus size: 46
37410123 CACATTATAA
* * * *
37410133 GAGCCAGTGTAAGACCATGACTGAGACATGGCATCGGCATCGAAATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GC-TCGAGATGT
* * *
37410181 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-CTCGAGATGT
* * * *
37410227 AAGCCAGTGTAA-AACATGTCTGGGACAT-GCATCGGTTACGAAATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCT-CGAGATG-T
* * * *
37410274 -AGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATTT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG-CTCGAGATGT
*
37410320 GAGCCAGTGTAAGACCATGTCTGGGATATGGCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCA
37410353 CTGGTACATT
Statistics
Matches: 141, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
45 2 0.01
46 59 0.42
47 62 0.44
48 18 0.13
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGCTCGAGATGT
Found at i:37413457 original size:22 final size:21
Alignment explanation
Indices: 37413423--37413463 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
37413413 TCTATTTGGT
*
37413423 CACACGGGTGTGTTGCCCCTCC
1 CACACGGGCGTG-TGCCCCTCC
*
37413445 CACATGGGCGTGTGCCCCT
1 CACACGGGCGTGTGCCCCT
37413464 GTGTCAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.10, C:0.39, G:0.29, T:0.22
Consensus pattern (21 bp):
CACACGGGCGTGTGCCCCTCC
Found at i:37416180 original size:31 final size:31
Alignment explanation
Indices: 37416145--37416207 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
37416135 TTGGCAAAAG
37416145 ATAAACATA-ATATGGATATAAGATGCAAATT
1 ATAAACA-AGATATGGATATAAGATGCAAATT
*
37416176 ATAAACAAGATATGGATATGAGATGCAAATT
1 ATAAACAAGATATGGATATAAGATGCAAATT
37416207 A
1 A
37416208 AATTGTGCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 29 0.97
ACGTcount: A:0.51, C:0.06, G:0.16, T:0.27
Consensus pattern (31 bp):
ATAAACAAGATATGGATATAAGATGCAAATT
Found at i:37421517 original size:34 final size:35
Alignment explanation
Indices: 37421469--37421584 Score: 123
Period size: 34 Copynumber: 3.4 Consensus size: 35
37421459 CAAATAAATG
* * **
37421469 TATATATATATATTCACCTTT-GGTTATATTAAAC
1 TATACATATATATTCACCTTTCGATTATACCAAAC
*
37421503 TATACATATATATTCA-CTTTCGATTATACCAAGC
1 TATACATATATATTCACCTTTCGATTATACCAAAC
* *
37421537 TATACATATATAATCACC-TTCGATTA-AGCCAAGC
1 TATACATATATATTCACCTTTCGATTATA-CCAAAC
*
37421571 CATACATATATATT
1 TATACATATATATT
37421585 TATGTACTTC
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
33 5 0.07
34 65 0.92
35 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (35 bp):
TATACATATATATTCACCTTTCGATTATACCAAAC
Found at i:37426136 original size:19 final size:19
Alignment explanation
Indices: 37426114--37426172 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
37426104 TATTTAATCC
**
37426114 AATTTTTATTATTTATTTT
1 AATTTTTATTATAAATTTT
* *
37426133 AATTTTGATTCTAAATTTT
1 AATTTTTATTATAAATTTT
* * *
37426152 TATTTTTATTTTAAAATTT
1 AATTTTTATTATAAATTTT
37426171 AA
1 AA
37426173 GATAACTTCA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTTTTATTATAAATTTT
Found at i:37426706 original size:13 final size:13
Alignment explanation
Indices: 37426688--37426714 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37426678 TAATTAAAGG
37426688 GTTAAAATTTAAA
1 GTTAAAATTTAAA
37426701 GTTAAAATTTAAA
1 GTTAAAATTTAAA
37426714 G
1 G
37426715 ATGATAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:37426760 original size:35 final size:35
Alignment explanation
Indices: 37426715--37426781 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
37426705 AAATTTAAAG
*
37426715 ATGATAATCATAATTTACATAAACATTTAAAGTTT
1 ATGATAATCATAATTTACATAAACATCTAAAGTTT
*
37426750 ATGATTATCATAATTTACATAAACATCTAAAG
1 ATGATAATCATAATTTACATAAACATCTAAAG
37426782 AATAAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.37
Consensus pattern (35 bp):
ATGATAATCATAATTTACATAAACATCTAAAGTTT
Found at i:37432329 original size:40 final size:40
Alignment explanation
Indices: 37432280--37432468 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
37432270 GCAACTCACG
* *
37432280 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCAATAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATCAATAGCA
* *
37432320 CAAAAGCCTTCGGGACTTAGCCCGGATATAATCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATCAATAGCA
*
37432360 CAAATGCCTTCGGGACTTAGCCTGGATATAATCAATAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATCAATAGCA
*
37432400 CAAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATCAATAGCA
* *
37432440 TAAATGCCTTCGGGACTTAACCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
37432469 CGTTCGAATA
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATCAATAGCA
Found at i:37434610 original size:43 final size:43
Alignment explanation
Indices: 37434544--37434660 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
37434534 ACGTCTGTGG
* * * * *
37434544 AAAAGCGCTGGTAAAGATCATGTTCTTTAGTAGCATTTGTGGA
1 AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCATTTGTAGA
* * * * * * *
37434587 AAAAGCGCCGCTAGAGTTTATGTTCTATAACGGCGTTTGTAGA
1 AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCATTTGTAGA
*
37434630 GAAAGCGCCGCTAAAGGTCATGTTCTTTAGC
1 AAAAGCGCCGCTAAAGGTCATGTTCTTTAGC
37434661 GGTATTTATG
Statistics
Matches: 57, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCATTTGTAGA
Found at i:37436608 original size:15 final size:16
Alignment explanation
Indices: 37436582--37436611 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
37436572 GTACATCGAG
37436582 CAAATAAAATTGAAAA
1 CAAATAAAATTGAAAA
37436598 CAAAT-AAATTGAAA
1 CAAATAAAATTGAAA
37436612 TGTGGTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.20
Consensus pattern (16 bp):
CAAATAAAATTGAAAA
Done.