Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 132 of 378
Found at i:37449228 original size:24 final size:24
Alignment explanation
Indices: 37449196--37449354 Score: 282
Period size: 24 Copynumber: 6.6 Consensus size: 24
37449186 TATCTCAAAT
37449196 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
37449220 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
37449244 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
37449268 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
37449292 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
37449316 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
37449340 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
37449355 ACATAATAAG
Statistics
Matches: 132, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 132 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:37449367 original size:48 final size:48
Alignment explanation
Indices: 37449196--37449376 Score: 274
Period size: 48 Copynumber: 3.8 Consensus size: 48
37449186 TATCTCAAAT
*
37449196 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATG
*
37449244 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATG
* *
37449292 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATG
* ** *
37449340 GCTCTATGTGTGCGAACATAATA-AGCACTATGTGTGC
1 GCACTATGTGTGCG-ATTTACTATAGCACTATGTGTGC
37449377 CACATTCGGT
Statistics
Matches: 125, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
48 120 0.96
49 5 0.04
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATG
Found at i:37449368 original size:72 final size:72
Alignment explanation
Indices: 37449196--37449376 Score: 238
Period size: 72 Copynumber: 2.5 Consensus size: 72
37449186 TATCTCAAAT
** * * *
37449196 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATT
1 GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATT
*
37449261 TACTATG
66 TACTATA
** * *
37449268 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATT
1 GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATT
*
37449333 TGCTATA
66 TACTATA
*
37449340 GCTCTATGTGTGCGAACATAATA-AGCACTATGTGTGC
1 GCACTATGTGTGCG-ACATAATATAGCACTATGTGTGC
37449377 CACATTCGGT
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
72 95 0.95
73 5 0.05
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (72 bp):
GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATT
TACTATA
Found at i:37451706 original size:23 final size:23
Alignment explanation
Indices: 37451688--37451746 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
37451678 ATCGCAGGGT
*
37451688 AGCTGCTAATAGTAACGCATCAA
1 AGCTGCTAATAGTAACGCAGCAA
37451711 AGCTGCTAATAGTAACGCAGCAA
1 AGCTGCTAATAGTAACGCAGCAA
37451734 AGCTGCTAATAGT
1 AGCTGCTAATAGT
37451747 GGTAAATGTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (23 bp):
AGCTGCTAATAGTAACGCAGCAA
Found at i:37454681 original size:39 final size:39
Alignment explanation
Indices: 37454550--37454740 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
37454540 GGATATAACG
* ** **
37454550 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
37454590 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
37454630 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
37454668 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
37454708 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
37454741 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:37454685 original size:78 final size:80
Alignment explanation
Indices: 37454590--37454740 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
37454580 GGTTATAGCG
* * * *
37454590 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
37454652 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
37454668 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
37454733 AGCCCGGA
66 AGCCCGGA
37454741 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:37462719 original size:39 final size:39
Alignment explanation
Indices: 37462588--37462778 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
37462578 GGATATAACG
* ** **
37462588 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
37462628 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
37462668 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
37462706 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
37462746 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
37462779 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:37462723 original size:78 final size:80
Alignment explanation
Indices: 37462628--37462778 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
37462618 GGTTATAGCG
* * * *
37462628 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
37462690 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
37462706 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
37462771 AGCCCGGA
66 AGCCCGGA
37462779 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:37470609 original size:55 final size:53
Alignment explanation
Indices: 37470542--37470671 Score: 136
Period size: 53 Copynumber: 2.4 Consensus size: 53
37470532 GCAAGTAAAT
* *
37470542 CATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAAGATCC
1 CATGTAAGACCATGTCAAGACATGGCAATGAT-AACTAC-ATAAGGCAAAGATAC
** * * * * *
37470597 CATGTAAGACCATG-CTAAGGTATGGCAATGGTGAGTTCATAAGGCAAGGATAC
1 CATGTAAGACCATGTC-AAGACATGGCAATGATAACTACATAAGGCAAAGATAC
*
37470650 CACGTAAGACCATGTCAAGACA
1 CATGTAAGACCATGTCAAGACA
37470672 CGACAATGGT
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
53 30 0.49
54 5 0.08
55 26 0.43
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAAGATAC
Found at i:37470679 original size:53 final size:53
Alignment explanation
Indices: 37470582--37470686 Score: 122
Period size: 53 Copynumber: 2.0 Consensus size: 53
37470572 ATAAACTACT
* * ** * * *
37470582 ATAAGGCAAAGATCCCATGTAAGACCATGCTAAGGTATGGCAATGGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAGACCATGCTAAGACACGACAATGGTAAGTTC
*
37470635 ATAAGGCAAGGATACCACGTAAGACCATG-TCAAGACACGACAATGGTAAGTT
1 ATAAGGCAAAGATACCACGTAAGACCATGCT-AAGACACGACAATGGTAAGTT
37470687 TAAAAAGGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
52 1 0.02
53 42 0.98
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAGACCATGCTAAGACACGACAATGGTAAGTTC
Found at i:37471120 original size:54 final size:54
Alignment explanation
Indices: 37471057--37471165 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 54
37471047 ATGGCATGTG
*
37471057 AATACTTGGTAATGGTTAGCTTAAGATAGCTAAATAAGAACAAGTTTTGGTATT
1 AATACTTGGTAATGATTAGCTTAAGATAGCTAAATAAGAACAAGTTTTGGTATT
* *
37471111 AATACTTGGTAATGATTAGCTTATGATAGCTAAATAAGAGCAAGTTTTGGTATT
1 AATACTTGGTAATGATTAGCTTAAGATAGCTAAATAAGAACAAGTTTTGGTATT
37471165 A
1 A
37471166 TGTATGCCTA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.36
Consensus pattern (54 bp):
AATACTTGGTAATGATTAGCTTAAGATAGCTAAATAAGAACAAGTTTTGGTATT
Found at i:37477216 original size:3 final size:3
Alignment explanation
Indices: 37477208--37477241 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
37477198 CTATGATTTG
37477208 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
37477242 TTCATGTGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:37489437 original size:16 final size:16
Alignment explanation
Indices: 37489416--37489455 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
37489406 GTAATGTTAG
37489416 AAATAAATCAAATTGA
1 AAATAAATCAAATTGA
37489432 AAATAAATCAAATTGA
1 AAATAAATCAAATTGA
37489448 AAATAAAT
1 AAATAAAT
37489456 AATTTCATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (16 bp):
AAATAAATCAAATTGA
Found at i:37491669 original size:34 final size:34
Alignment explanation
Indices: 37491631--37491739 Score: 139
Period size: 34 Copynumber: 3.2 Consensus size: 34
37491621 CTTGATACGG
*
37491631 TAGCAAATAATATGCTTATAATAGATCAATACAA
1 TAGCAAATAATATGCTTATAATAAATCAATACAA
* * **
37491665 TAGCAAATAATATGCTTATAACAAATCAATGCGG
1 TAGCAAATAATATGCTTATAATAAATCAATACAA
* *
37491699 TAGCAATTAATATGTTTAT-ATCAAATCAATACAA
1 TAGCAAATAATATGCTTATAAT-AAATCAATACAA
37491733 TAGCAAA
1 TAGCAAA
37491740 AGACATGCTT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
33 1 0.02
34 61 0.98
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (34 bp):
TAGCAAATAATATGCTTATAATAAATCAATACAA
Found at i:37491681 original size:68 final size:68
Alignment explanation
Indices: 37491574--37491739 Score: 199
Period size: 68 Copynumber: 2.4 Consensus size: 68
37491564 GCAATATGAC
*** * * * * **
37491574 ATGCTTATAATAGATCAATATGGTAGTAATTAATTTGCTTATAACAACTTGATACGGTAGCAAAT
1 ATGCTTATAATAGATCAATACAATAGCAAATAATATGCTTATAACAAATCAATACGGTAGCAAAT
37491639 AAT
66 AAT
* *
37491642 ATGCTTATAATAGATCAATACAATAGCAAATAATATGCTTATAACAAATCAATGCGGTAGCAATT
1 ATGCTTATAATAGATCAATACAATAGCAAATAATATGCTTATAACAAATCAATACGGTAGCAAAT
37491707 AAT
66 AAT
* *
37491710 ATGTTTAT-ATCAAATCAATACAATAGCAAA
1 ATGCTTATAAT-AGATCAATACAATAGCAAA
37491740 AGACATGCTT
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
67 2 0.02
68 82 0.98
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (68 bp):
ATGCTTATAATAGATCAATACAATAGCAAATAATATGCTTATAACAAATCAATACGGTAGCAAAT
AAT
Found at i:37503862 original size:27 final size:27
Alignment explanation
Indices: 37503832--37503911 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 27
37503822 TGTGAAAGTG
37503832 GATGTATATGTGATGAGGCTAATGGCC
1 GATGTATATGTGATGAGGCTAATGGCC
* * *
37503859 GATGTA-ATG-AATG-TG--AAAGTG--
1 GATGTATATGTGATGAGGCTAATG-GCC
*
37503880 TATGTATATGTGATGAGGCTAATGGCC
1 GATGTATATGTGATGAGGCTAATGGCC
37503907 GATGT
1 GATGT
37503912 GGTGAATGTG
Statistics
Matches: 37, Mismatches: 8, Indels: 16
0.61 0.13 0.26
Matches are distributed among these distances:
21 5 0.14
22 6 0.16
23 4 0.11
24 2 0.05
25 4 0.11
26 6 0.16
27 10 0.27
ACGTcount: A:0.29, C:0.07, G:0.33, T:0.31
Consensus pattern (27 bp):
GATGTATATGTGATGAGGCTAATGGCC
Found at i:37503869 original size:48 final size:47
Alignment explanation
Indices: 37503804--37504120 Score: 463
Period size: 48 Copynumber: 6.8 Consensus size: 47
37503794 GATAAGGCCG
* * * *
37503804 AATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATGAGGCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGAT-AGGCT
**
37503852 AATGGCCGATGTAATGAATGTGAAAGTGTATGTATATGTGATGAGGCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGAT-AGGCT
37503900 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGAT-AGG-CT
37503949 AATGGCCGATGTGGTGAATGTGAAAGTGTATGT-TATGTGATA-GCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAGGCT
37503994 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAGG-CT
37504042 AATGGCCGATGT-G-GAATGT--AAGTGTATGTATATGTGATAAGGCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGAT-AGGCT
37504086 AATGG-CGATGT-GTGAATGTG-AAGTGTATGTATATG
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATG
37504121 ATAAGCCTAA
Statistics
Matches: 255, Mismatches: 7, Indels: 17
0.91 0.03 0.06
Matches are distributed among these distances:
43 7 0.03
44 32 0.13
45 53 0.21
46 16 0.06
47 3 0.01
48 109 0.43
49 35 0.14
ACGTcount: A:0.29, C:0.07, G:0.33, T:0.31
Consensus pattern (47 bp):
AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAGGCT
Found at i:37504050 original size:142 final size:139
Alignment explanation
Indices: 37503791--37504134 Score: 486
Period size: 142 Copynumber: 2.5 Consensus size: 139
37503781 TACATATATG
* * * * * *
37503791 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATGAGGCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGT-TATGTGAT-AAGCTAATG
37503856 GCCGATGTAATGAATGTGAAAGTGTATGTATATGTGATGAGGCTAATGGCCGATGTGGTGAATGT
64 GCCGATGTAATGAATGTGAAAGTGTATGTATATGTGATGAGGCTAATGGCCGATGT-G-GAATGT
37503921 GAAAGTGTATGTATA
127 --AAGTGTATGTATA
37503936 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTTATGTGAT-AGCTAATGGC
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTTATGTGATAAGCTAATGGC
**
37504000 CGATGTGGTGAATGTGAAAGTGTATGTATATGTGAT-AGGCCTAATGGCCGATGTGGAATGTAAG
66 CGATGTAATGAATGTGAAAGTGTATGTATATGTGATGAGG-CTAATGGCCGATGTGGAATGTAAG
37504064 TGTATGTATA
130 TGTATGTATA
*
37504074 TGTGATAAGG-CTAATGG-CGATGT-GTGAATGTG-AAGTGTATG-TATATGATAAGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTTATGTGATAAG-CTAATGG
37504134 C
65 C
37504135 TAATGTAAAA
Statistics
Matches: 187, Mismatches: 9, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
133 7 0.04
134 11 0.06
135 17 0.09
136 6 0.03
137 7 0.04
138 23 0.12
140 6 0.03
141 4 0.02
142 57 0.30
144 8 0.04
145 41 0.22
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (139 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTTATGTGATAAGCTAATGGC
CGATGTAATGAATGTGAAAGTGTATGTATATGTGATGAGGCTAATGGCCGATGTGGAATGTAAGT
GTATGTATA
Found at i:37504284 original size:37 final size:37
Alignment explanation
Indices: 37504234--37504317 Score: 150
Period size: 37 Copynumber: 2.3 Consensus size: 37
37504224 GGAATATGTT
*
37504234 CGGGTGAGACCCGATGACTACGTGTGGAGATTATGAC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
*
37504271 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
37504308 CGGGTAAGAC
1 CGGGTAAGAC
37504318 TTCTTTTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.25, C:0.19, G:0.35, T:0.21
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
Found at i:37506204 original size:40 final size:40
Alignment explanation
Indices: 37506122--37506206 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
37506112 GAGAATTGAG
** * * *
37506122 AGTGATGTATCCGGACTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGCCCCAAAGAGCAATCATACT
* * *
37506162 AGTGATGTATCCGGGCTAGGCCCCGAAGAGCAATCATACT
1 AGTGATGTATCCGGACTAAGCCCCAAAGAGCAATCATACT
37506202 AGTGA
1 AGTGA
37506207 CGTGTATTCG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGCCCCAAAGAGCAATCATACT
Found at i:37506446 original size:29 final size:29
Alignment explanation
Indices: 37506404--37506706 Score: 528
Period size: 29 Copynumber: 10.7 Consensus size: 29
37506394 GCGAATGATT
37506404 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
37506433 GAGGCACTATGTGTGC-AGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
37506461 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
37506490 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
37506519 GAGGCACTATGTGTGC-AGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
37506547 GA--CAC-ATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
37506573 GAGGCACCATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
37506602 GAGGCACTATGTGTGCGAGATCAGTAAT-
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
37506630 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
37506659 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
37506688 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
37506707 TTTTTCAACA
Statistics
Matches: 266, Mismatches: 2, Indels: 12
0.95 0.01 0.04
Matches are distributed among these distances:
25 8 0.03
26 17 0.06
28 73 0.27
29 168 0.63
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.24
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:37506730 original size:57 final size:58
Alignment explanation
Indices: 37506404--37506706 Score: 528
Period size: 57 Copynumber: 5.3 Consensus size: 58
37506394 GCGAATGATT
37506404 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGC-AGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATC
37506461 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATC
37506519 GAGGCACTATGTGTGC-AGATCAGTAATCGA--CAC-ATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATC
*
37506573 GAGGCACCATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAAT-
1 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATC
* *
37506630 GAGGCACTATGTGTGCGAGATCAGTAATTGAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATC
*
37506688 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
37506707 TTTTTCAACA
Statistics
Matches: 236, Mismatches: 4, Indels: 11
0.94 0.02 0.04
Matches are distributed among these distances:
54 36 0.15
55 17 0.07
57 117 0.50
58 66 0.28
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.24
Consensus pattern (58 bp):
GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:37506730 original size:86 final size:86
Alignment explanation
Indices: 37506404--37506703 Score: 527
Period size: 86 Copynumber: 3.5 Consensus size: 86
37506394 GCGAATGATT
37506404 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCAGATCAGTAATCGAGGCACT
1 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCAGATCAGTAATCGAGGCACT
37506469 ATGTGTGCGAGATCAGTAATC
66 ATGTGTGCGAGATCAGTAATC
37506490 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCAGATCAGTAATCGA--CAC-
1 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCAGATCAGTAATCGAGGCACT
37506552 ATGTGTGCGAGATCAGTAATC
66 ATGTGTGCGAGATCAGTAATC
*
37506573 GAGGCACCATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAAT-GAGGCAC
1 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGC-AGATCAGTAATCGAGGCAC
*
37506637 TATGTGTGCGAGATCAGTAATT
65 TATGTGTGCGAGATCAGTAATC
* *
37506659 GAGGCACTATGTGTGCGAGATCAGTAATTGAGGCACTGTGTGTGC
1 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGC
37506704 GAGTTTTTCA
Statistics
Matches: 205, Mismatches: 5, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
83 67 0.33
84 14 0.07
85 3 0.01
86 121 0.59
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (86 bp):
GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCAGATCAGTAATCGAGGCACT
ATGTGTGCGAGATCAGTAATC
Found at i:37507288 original size:40 final size:41
Alignment explanation
Indices: 37507190--37507288 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
37507180 TTCGAATGGT
* ** * *
37507190 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
37507231 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A
37507272 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
37507289 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
Found at i:37510077 original size:49 final size:49
Alignment explanation
Indices: 37510011--37510372 Score: 607
Period size: 49 Copynumber: 7.4 Consensus size: 49
37510001 TACATATATG
* * * * *
37510011 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* * **
37510060 TGTGATGAGGCTTAATGGCCGATGTAATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
37510109 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
37510158 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTCTA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
37510207 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
37510256 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
37510305 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
37510354 TGTGATAAGGCCTAGTGGC
1 TGTGATAAGGCCTAATGGC
37510373 TAATGTAAAA
Statistics
Matches: 297, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 297 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:37510516 original size:37 final size:37
Alignment explanation
Indices: 37510474--37510558 Score: 143
Period size: 37 Copynumber: 2.3 Consensus size: 37
37510464 GGAATATGTT
*
37510474 CCGGGTGAGACCCGATGACTACATGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACATGTGGAGATTATGA
* *
37510511 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACATGTGGAGATTATGA
37510548 CCGGGTAAGAC
1 CCGGGTAAGAC
37510559 TTCTTTTATA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.26, C:0.20, G:0.33, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACATGTGGAGATTATGA
Found at i:37515896 original size:43 final size:43
Alignment explanation
Indices: 37515835--37516059 Score: 301
Period size: 43 Copynumber: 5.2 Consensus size: 43
37515825 ACATATCGTA
* **
37515835 CAATGCCAACGTCCCAGACGTGGTCTTGCATGTAATCATGTAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
*
37515878 CAATGCC-ACTGTCTCAGACAG-GGTCTTACATGTAATCACATAT
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCACATAT
* *
37515921 CGATGCCAACGTCCCAGACGTGATCTTACATGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
* * * *
37515964 CGATGCCAACATCCCAGATGTGGTCTTATATGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
* **
37516007 CGATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
37516050 CAATGCCAAC
1 CAATGCCAAC
37516060 TAAAAATGTA
Statistics
Matches: 161, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
42 3 0.02
43 155 0.96
44 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
Found at i:37518061 original size:19 final size:19
Alignment explanation
Indices: 37518039--37518077 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
37518029 TAAAACTAGC
*
37518039 ATTAGAATTAAAAATAAAG
1 ATTAAAATTAAAAATAAAG
*
37518058 ATTAAAATTAAAATTAAAG
1 ATTAAAATTAAAAATAAAG
37518077 A
1 A
37518078 CAAAGACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (19 bp):
ATTAAAATTAAAAATAAAG
Found at i:37518072 original size:25 final size:25
Alignment explanation
Indices: 37518039--37518106 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
37518029 TAAAACTAGC
* **
37518039 ATTAGAATTAAAAATAAAGATTAAA
1 ATTAAAATTAAAAATAAAGACAAAA
* *
37518064 ATTAAAATTAAAGACAAAGACAAAA
1 ATTAAAATTAAAAATAAAGACAAAA
*
37518089 ATGAGAAA-TAAAAATAAA
1 ATTA-AAATTAAAAATAAA
37518107 ACTAAGAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
25 31 0.91
26 3 0.09
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.21
Consensus pattern (25 bp):
ATTAAAATTAAAAATAAAGACAAAA
Found at i:37529989 original size:38 final size:39
Alignment explanation
Indices: 37529946--37530082 Score: 154
Period size: 39 Copynumber: 3.5 Consensus size: 39
37529936 GGATATAACG
*
37529946 ACTCGCTCAAATGCCTTCGGGAC-AAACCC-GTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGTT-TAGTA
* *
37529984 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCC-GGTTTAGTA
* * *
37530024 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGG-TTTAGTA
* *
37530063 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
37530083 ATCTTAGTCC
Statistics
Matches: 87, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
38 23 0.26
39 36 0.41
40 25 0.29
41 3 0.03
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCGGTTTAGTA
Found at i:37530065 original size:39 final size:40
Alignment explanation
Indices: 37529946--37530135 Score: 185
Period size: 40 Copynumber: 4.8 Consensus size: 40
37529936 GGATATAACG
* * *
37529946 ACTCGCTCAAATGCCTTCGGGAC-AAACCC-G-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* * *
37529984 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
37530024 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * *
37530063 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
**
37530103 ACTTAACACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
37530136 CATCATTCAA
Statistics
Matches: 128, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
38 23 0.18
39 36 0.28
40 58 0.45
41 11 0.09
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:37530081 original size:79 final size:80
Alignment explanation
Indices: 37529982--37530135 Score: 197
Period size: 79 Copynumber: 1.9 Consensus size: 80
37529972 CCCGTTATAG
* * * **
37529982 TAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAAC-TCGCACAAATGCCTTCGGG
1 TAACTCGCACGAACGCCTTC-GGATCTTAACCCGGATATAGTAACTTAACACAAA-GCCTTCGGG
37530045 -CTTAGCCCGGATTTAT
64 ACTTAGCCCGGATTTAT
** *
37530061 TAACTCGCACGAACGCCTTCGGATCTTAGTCCGGATATAGTCACTTAACACAAAGCCTTCGGGAC
1 TAACTCGCACGAACGCCTTCGGATCTTAACCCGGATATAGTAACTTAACACAAAGCCTTCGGGAC
37530126 TTAGCCCGGA
66 TTAGCCCGGA
37530136 CATCATTCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
78 3 0.05
79 43 0.67
80 18 0.28
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (80 bp):
TAACTCGCACGAACGCCTTCGGATCTTAACCCGGATATAGTAACTTAACACAAAGCCTTCGGGAC
TTAGCCCGGATTTAT
Found at i:37538022 original size:40 final size:40
Alignment explanation
Indices: 37537977--37538077 Score: 143
Period size: 40 Copynumber: 2.5 Consensus size: 40
37537967 GGATATAACG
*
37537977 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTA
* *
37538017 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
37538057 ACTCGCACAAATGCCTTCGGG
1 ACTCGCACAAATGCCTTCGGG
37538078 CTTAGCCCAG
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 49 0.89
41 6 0.11
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
Found at i:37538114 original size:39 final size:40
Alignment explanation
Indices: 37537977--37538115 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
37537967 GGATATAACG
* * * *
37537977 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCAGATT-TAGTA
* *
37538017 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCAGATTTAGTA
* * *
37538057 ACTCGCACAAATGCCTTCGGG-CTTAGCCCAGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCAGATTTAGTA
* *
37538096 ACACGCACGAACGCCTTCGG
1 ACTCGCACGAATGCCTTCGG
37538116 ATCTTAGTCC
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 31 0.36
40 49 0.57
41 6 0.07
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCAGATTTAGTA
Found at i:37546846 original size:86 final size:85
Alignment explanation
Indices: 37546744--37546901 Score: 232
Period size: 85 Copynumber: 1.8 Consensus size: 85
37546734 ATGTGTCATT
* * *
37546744 GTGTAAGACCACGTCTGGGAC-GTTGGTATCGAT-TTGTGATTTACGTGTAAGACCATGTCTAGG
1 GTGTAAGACCACGTCTGGGACAG-TGGCATCGATATT-TGA-TTACATGTAAGACCAAGTCTAGG
37546807 ACATTGGCATCGTATATGATTTC
63 ACATTGGCATCGTATATGATTTC
37546830 GTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTACATGTAAGACCAAGTCTAGGAC
1 GTGTAAGACCAC-GTCTGGGACAGTGGCATCGATATTTGATTACATGTAAGACCAAGTCTAGGAC
37546894 ATTGGCAT
65 ATTGGCAT
37546902 TGTACGAGCT
Statistics
Matches: 66, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
85 32 0.48
86 31 0.47
87 3 0.05
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (85 bp):
GTGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTACATGTAAGACCAAGTCTAGGACA
TTGGCATCGTATATGATTTC
Found at i:37546870 original size:43 final size:43
Alignment explanation
Indices: 37546744--37546901 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
37546734 ATGTGTCATT
* * *
37546744 GTGTAAGACCACGTCTGGGAC-GTTGGTATCGAT-TTGTGATTTAC
1 GTGTAAGACCATGTCTAGGACAG-TGGCATCGATATT-TGATTT-C
* *
37546788 GTGTAAGACCATGTCTAGGACATTGGCATCG-TATATGATTTC
1 GTGTAAGACCATGTCTAGGACAGTGGCATCGATATTTGATTTC
* * *
37546830 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTAGGACAGTGGCATCGATATTTGATTTC
* * *
37546873 ATGTAAGACCAAGTCTAGGACATTGGCAT
1 GTGTAAGACCATGTCTAGGACAGTGGCAT
37546902 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 29 0.30
43 40 0.42
44 27 0.28
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCATGTCTAGGACAGTGGCATCGATATTTGATTTC
Found at i:37554696 original size:268 final size:268
Alignment explanation
Indices: 37554212--37554747 Score: 948
Period size: 268 Copynumber: 2.0 Consensus size: 268
37554202 GTAATATTTG
*
37554212 AGATAGTAGAAATATCTCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
1 AGATAGTAGAAATATCCCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
*
37554277 GATTTGTACACCAGTATGAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
66 GATTTGTACACCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
37554342 AAGACATGTCTGGGACATGTTTCAGACATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
131 AAGACATGTCTGGGACATGTTTCAGACATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
* * * *
37554407 CATCGGCCTCAATAGAGATAGCCAGTGTAAGACGTGTCTGGGACATGTATCGGCTAAGAGTTGTG
196 CATCGGCCTCAACAAAGATAGCCAGGGTAAGACGTGTCTGGGACATGCATCGGCTAAGAGTTGTG
37554472 CTAGTGTA
261 CTAGTGTA
37554480 AGATAGTAGAAATATCCCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
1 AGATAGTAGAAATATCCCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
* *
37554545 GATTTGTACGCCAGTATAAGACCATGTTTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
66 GATTTGTACACCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
* *
37554610 AAGACATGTCTGGGACATGCTTT-AGCCATATTATGAGTGCCAGAGTAAGACATGTCTGGGACAT
131 AAGACATGTCTGGGACATG-TTTCAGACATATTATGAGTGCCAGAGTAAGACATGTCTAGGACAT
* *
37554674 GCATCGGCCTCAACAAAGATAGCTAGGGTAAGACGTGTCTGGGACATGCATTGGCTAAGAGTTGT
195 GCATCGGCCTCAACAAAGATAGCCAGGGTAAGACGTGTCTGGGACATGCATCGGCTAAGAGTTGT
37554739 GCTAGTGTA
260 GCTAGTGTA
37554748 GGACATGTCT
Statistics
Matches: 255, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
268 252 0.99
269 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.27
Consensus pattern (268 bp):
AGATAGTAGAAATATCCCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
GATTTGTACACCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
AAGACATGTCTGGGACATGTTTCAGACATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
CATCGGCCTCAACAAAGATAGCCAGGGTAAGACGTGTCTGGGACATGCATCGGCTAAGAGTTGTG
CTAGTGTA
Found at i:37556558 original size:40 final size:40
Alignment explanation
Indices: 37556498--37556651 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 40
37556488 CTAAGTGATT
* * **
37556498 AAATCCGGGTCAATTCCCGAAGGCATTTTTGCGAGTTACCA
1 AAAT-CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACCA
37556539 AAATCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACCA
1 AAATCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACCA
*
37556579 AAATCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
1 AAATCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACCA
* * *
37556619 AATTCGGGCTAATTCCCGAAGGCAATT-GTGCGA
1 AAATCGGGTTAAGTCCCGAAGGC-ATTCGTGCGA
37556652 ATCACTATAA
Statistics
Matches: 104, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
40 97 0.93
41 7 0.07
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
AAATCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACCA
Found at i:37556611 original size:80 final size:81
Alignment explanation
Indices: 37556463--37556651 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 81
37556453 AATGGTGTCT
** * * ** * **
37556463 GGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGA-TTAAATCCGGGTCAATTCCCGAAGGCATTTT
1 GGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACCAAAATCCGGGTCAAGTCCCGAAGGCATTCG
37556527 TGCGAGTTACCAAAATC
65 TGCGAGTTACCAAAATC
* *
37556544 GGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACCAAAAT-CGGGTTAAGTCCCGAAGGCATTCG
1 GGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACCAAAATCCGGGTCAAGTCCCGAAGGCATTCG
* *
37556607 TGCGAGTTACTAAATTC
65 TGCGAGTTACCAAAATC
*
37556624 GGGCTAATTCCCGAAGGCAATTGTGCGA
1 GGGCTAAGTCCCGAAGGCAATTGTGCGA
37556652 ATCACTATAA
Statistics
Matches: 91, Mismatches: 14, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
80 63 0.69
81 28 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCAAAATCCGGGTCAAGTCCCGAAGGCATTCGT
GCGAGTTACCAAAATC
Found at i:37556675 original size:80 final size:80
Alignment explanation
Indices: 37556463--37556693 Score: 205
Period size: 80 Copynumber: 2.9 Consensus size: 80
37556453 AATGGTGTCT
* * * * ** * * **
37556463 GGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAATCCGGG-TCAATTCCCGAAGGCATTTT
1 GGGCTAAGTCCCGAAGGCATTCGTGCGAA-TCACCAAAACCGGGCT-AAGTCCCGAAGGCATTCG
37556527 TGCGAGTTACCAAAATC
64 TGCGAGTTACCAAAATC
* * * * *
37556544 GGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACCAAAATCGGGTTAAGTCCCGAAGGCATTCGTG
1 GGGCTAAGTCCCGAAGGCATTCGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTCGTG
* *
37556609 CGAGTTACTAAATTC
66 CGAGTTACCAAAATC
* * * * * * *
37556624 GGGCTAATTCCCGAAGGCAATT-GTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGA
1 GGGCTAAGTCCCGAAGGC-ATTCGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTCGT
37556688 GCGAGT
65 GCGAGT
37556694 CGCTATATCC
Statistics
Matches: 121, Mismatches: 27, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
80 93 0.77
81 28 0.23
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTCGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTCGTG
CGAGTTACCAAAATC
Found at i:37556676 original size:40 final size:39
Alignment explanation
Indices: 37556463--37556693 Score: 171
Period size: 40 Copynumber: 5.8 Consensus size: 39
37556453 AATGGTGTCT
* * * * * *
37556463 GGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAATCC
1 GGGCTATGTCCCGAAGGCATTCGTGC-GAGTTACTAAAT-C
* ** *
37556504 GGGTCAAT-TCCCGAAGGCATTTTTGCGAGTTACCAAAATC
1 GGG-CTATGTCCCGAAGGCATTCGTGCGAGTTA-CTAAATC
* * *
37556544 GGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACCAAAATC
1 GGGCTATGTCCCGAAGGCATTCGTGCGAGTTA-CTAAATC
* *
37556584 GGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATTC
1 GGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTAAA-TC
* * *
37556624 GGGCTAAT-TCCCGAAGGCAATT-GTGCGAATCACTATAACC
1 GGGCT-ATGTCCCGAAGGC-ATTCGTGCGAGTTACTA-AATC
* * *
37556664 GGGCTATGTCCCGAAGACAATCGAGCGAGT
1 GGGCTATGTCCCGAAGGCATTCGTGCGAGT
37556694 CGCTATATCC
Statistics
Matches: 158, Mismatches: 23, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
39 9 0.06
40 118 0.75
41 29 0.18
42 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
GGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTAAATC
Found at i:37556692 original size:120 final size:121
Alignment explanation
Indices: 37556467--37556693 Score: 269
Period size: 120 Copynumber: 1.9 Consensus size: 121
37556457 GTGTCTGGGC
* * * * *
37556467 TAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAATCCGGGTCAATTCCCGAAGGCATTTTTGCGA
1 TAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGA
* * * * * * *
37556532 GTTACCAAAATCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACCAAAATCGGGT
66 ATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTTACCAAAATCGGGT
* * *
37556588 TAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATTCGGG-CTAATTCCCGAAGGCAATTGTGCG
1 TAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCG
* * *
37556651 AATCACTATAACCGGGCTATGTCCCGAAGACAATCGAGCGAGT
65 AATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGT
37556694 CGCTATATCC
Statistics
Matches: 87, Mismatches: 18, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
119 1 0.01
120 66 0.76
121 20 0.23
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (121 bp):
TAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGA
ATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTTACCAAAATCGGGT
Found at i:37556700 original size:40 final size:40
Alignment explanation
Indices: 37556623--37556705 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 40
37556613 TTACTAAATT
* * *
37556623 CGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAAC
1 CGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAAC
* * *
37556663 CGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATATC
1 CGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAAC
37556703 CGG
1 CGG
37556706 TTAAATTTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
39 2 0.06
40 34 0.94
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (40 bp):
CGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAAC
Found at i:37562441 original size:43 final size:43
Alignment explanation
Indices: 37562313--37562474 Score: 193
Period size: 43 Copynumber: 3.8 Consensus size: 43
37562303 ATATGTGTTA
** *
37562313 TCGTGTAAGACCACGTCTGGGACGTTGGCATCAATTTTTGATT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATT
* * * *
37562356 TACGTGTAAGACCATGTCTGGGACATTGGCA-TCATATATGATT
1 T-CGTGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATT
**
37562399 TCGTGTAAGACCTTGTCTGGGACAG-TGGCATTGATATTTGATT
1 TCGTGTAAGACCACGTCTGGGAC-GTTGGCATTGATATTTGATT
* *
37562442 ACATGTAAGACCACGTCTGGGACGTTGGCATTG
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATTG
37562475 TACGAACTTA
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
42 27 0.27
43 47 0.47
44 27 0.27
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATT
Found at i:37564138 original size:234 final size:234
Alignment explanation
Indices: 37563729--37564197 Score: 938
Period size: 234 Copynumber: 2.0 Consensus size: 234
37563719 AAATGTTGCA
37563729 TTTATGATGCTTGACTTTGGACTTGTAGGGAAGACCTAAATGGGTGGCATATTGGCCTTGTAAAT
1 TTTATGATGCTTGACTTTGGACTTGTAGGGAAGACCTAAATGGGTGGCATATTGGCCTTGTAAAT
37563794 GACCTATTTTTTGCCCACACGGGTAGGGACACGAGCATGTGTCTCTACCGTGTTACTCAATGGCC
66 GACCTATTTTTTGCCCACACGGGTAGGGACACGAGCATGTGTCTCTACCGTGTTACTCAATGGCC
37563859 ATTTTGAAATGAGCCTAGGCAGACCACATGGCCGCGCACACACGGGCGTGTGCCAGACCGTGTGG
131 ATTTTGAAATGAGCCTAGGCAGACCACATGGCCGCGCACACACGGGCGTGTGCCAGACCGTGTGG
37563924 CCAAGTCAGTTTCGACCACGGGCTAGACACGCAGACGTG
196 CCAAGTCAGTTTCGACCACGGGCTAGACACGCAGACGTG
37563963 TTTATGATGCTTGACTTTGGACTTGTAGGGAAGACCTAAATGGGTGGCATATTGGCCTTGTAAAT
1 TTTATGATGCTTGACTTTGGACTTGTAGGGAAGACCTAAATGGGTGGCATATTGGCCTTGTAAAT
37564028 GACCTATTTTTTGCCCACACGGGTAGGGACACGAGCATGTGTCTCTACCGTGTTACTCAATGGCC
66 GACCTATTTTTTGCCCACACGGGTAGGGACACGAGCATGTGTCTCTACCGTGTTACTCAATGGCC
37564093 ATTTTGAAATGAGCCTAGGCAGACCACATGGCCGCGCACACACGGGCGTGTGCCAGACCGTGTGG
131 ATTTTGAAATGAGCCTAGGCAGACCACATGGCCGCGCACACACGGGCGTGTGCCAGACCGTGTGG
37564158 CCAAGTCAGTTTCGACCACGGGCTAGACACGCAGACGTG
196 CCAAGTCAGTTTCGACCACGGGCTAGACACGCAGACGTG
37564197 T
1 T
37564198 CTTGTGGCTG
Statistics
Matches: 235, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
234 235 1.00
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (234 bp):
TTTATGATGCTTGACTTTGGACTTGTAGGGAAGACCTAAATGGGTGGCATATTGGCCTTGTAAAT
GACCTATTTTTTGCCCACACGGGTAGGGACACGAGCATGTGTCTCTACCGTGTTACTCAATGGCC
ATTTTGAAATGAGCCTAGGCAGACCACATGGCCGCGCACACACGGGCGTGTGCCAGACCGTGTGG
CCAAGTCAGTTTCGACCACGGGCTAGACACGCAGACGTG
Found at i:37566486 original size:141 final size:142
Alignment explanation
Indices: 37566214--37566500 Score: 504
Period size: 141 Copynumber: 2.0 Consensus size: 142
37566204 TTTTTCAGTT
*
37566214 CAATAACTTAGCAAACATGTCCATCTTTTATCACCTTCTTTACGGGGTCAAGTAGTCAACCCCAT
1 CAATAACTTAGCAAACATGTCCATCTTTTATCACCTTCTTTACGAGGTCAAGTAGTCAACCCCAT
* *
37566279 GCCCAAAATTGCATGGTCTTGTCGTCTACATGGATAATTTGCGCATGGCCATCTTTTATTTATTT
66 GCCCAAAATTGCATGGTCTTGCCGTCTACATGGATAATTTGCGCATGGACATCTTTTATTTATTT
37566344 AAATCATGTCTC
131 AAATCATGTCTC
* * *
37566356 CAATAACTTAGCAGACATGTCCATCTTTTATCACCTTCTTTACGAGGTCAAGTAGTCGACTCCAT
1 CAATAACTTAGCAAACATGTCCATCTTTTATCACCTTCTTTACGAGGTCAAGTAGTCAACCCCAT
*
37566421 G-CCAAAATTGCATGGTCTTGCCGTCTACATGGATAATTTGTGCATGGACATCTTTTATTTATTT
66 GCCCAAAATTGCATGGTCTTGCCGTCTACATGGATAATTTGCGCATGGACATCTTTTATTTATTT
37566485 AAATCATGTCTC
131 AAATCATGTCTC
37566497 CAAT
1 CAAT
37566501 TGCCTACCTA
Statistics
Matches: 138, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
141 76 0.55
142 62 0.45
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (142 bp):
CAATAACTTAGCAAACATGTCCATCTTTTATCACCTTCTTTACGAGGTCAAGTAGTCAACCCCAT
GCCCAAAATTGCATGGTCTTGCCGTCTACATGGATAATTTGCGCATGGACATCTTTTATTTATTT
AAATCATGTCTC
Found at i:37570716 original size:30 final size:30
Alignment explanation
Indices: 37570671--37570730 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37570661 ATTTAATACG
*
37570671 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
37570701 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
37570731 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:37575988 original size:21 final size:21
Alignment explanation
Indices: 37575964--37576005 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37575954 TCATCAGATC
*
37575964 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
37575985 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
37576006 AGGTTGTGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:37578257 original size:30 final size:30
Alignment explanation
Indices: 37578212--37578271 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37578202 ATTTAATACG
*
37578212 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
37578242 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
37578272 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:37583390 original size:5 final size:5
Alignment explanation
Indices: 37583380--37583404 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
37583370 TATTGGGGTT
37583380 GACAG GACAG GACAG GACAG GACAG
1 GACAG GACAG GACAG GACAG GACAG
37583405 AAATGAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
GACAG
Found at i:37583472 original size:46 final size:48
Alignment explanation
Indices: 37583400--37583503 Score: 140
Period size: 49 Copynumber: 2.2 Consensus size: 48
37583390 GACAGGACAG
* * *
37583400 GACAGAAATGAGCCATGTAAGTCC-ATAT-CAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCAATATACAGATATATGGCATTGGA
* *
37583446 GACAGGAATGAGCCATGTAAGCCCATATATATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCA-ATATACAGATATATGGCATTGGA
37583495 GACAGGAAT
1 GACAGGAAT
37583504 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
46 22 0.44
48 4 0.08
49 24 0.48
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCAATATACAGATATATGGCATTGGA
Found at i:37590862 original size:48 final size:47
Alignment explanation
Indices: 37590779--37590870 Score: 130
Period size: 48 Copynumber: 1.9 Consensus size: 47
37590769 ATGTAAATCC
* *
37590779 ATATTATATGGCTTTGGAGACAGGAATGAGCCATGTAAGCCCATATT
1 ATATTATATGGCATTGGAGACAGGAATAAGCCATGTAAGCCCATATT
** *
37590826 ATATATATATGGCATTGGAGACAGGAATAATTCATGTAAGTCCAT
1 ATAT-TATATGGCATTGGAGACAGGAATAAGCCATGTAAGCCCAT
37590871 GTCGAAGACA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 4 0.10
48 35 0.90
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (47 bp):
ATATTATATGGCATTGGAGACAGGAATAAGCCATGTAAGCCCATATT
Found at i:37593074 original size:47 final size:46
Alignment explanation
Indices: 37592968--37593273 Score: 263
Period size: 47 Copynumber: 6.6 Consensus size: 46
37592958 CACATTACGA
* * *
37592968 TAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGCGTAGA-GATAAG
1 TAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTA-ATGAT-GG
* *
37593017 T-GCCAATGTAAGACATGTCTAGGACATGCATCGGCCTCAATGATGG
1 TAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-AATGATGG
* *
37593063 TAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTAA-GCTTCG
1 TAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAATG-ATGG
* * * * * *
37593108 T-GCTAGTGTAAGACATGTCTGGGACATACAGT-AGCACTTATACACGAG
1 TAGCCAGTGTAAGACATGTCTGGGACATGCA-TCGGC-CTAAT-GATG-G
* *
37593156 -AGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAATGATGG
1 TAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-AATGATGG
* * *
37593202 TAGCCAGTGTAAGACGTGTCTGGGACATGCATCGG-CTAA-GCTTCG
1 TAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAATG-ATGG
*
37593247 T-GCTAGTGTAAGACATGTCTGGGACAT
1 TAGCCAGTGTAAGACATGTCTGGGACAT
37593274 ACAGTAGCAC
Statistics
Matches: 212, Mismatches: 30, Indels: 35
0.77 0.11 0.13
Matches are distributed among these distances:
44 54 0.25
45 11 0.05
46 20 0.09
47 83 0.39
48 43 0.20
49 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
TAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAATGATGG
Found at i:37593133 original size:91 final size:89
Alignment explanation
Indices: 37592968--37593273 Score: 262
Period size: 91 Copynumber: 3.3 Consensus size: 89
37592958 CACATTACGA
* * *
37592968 TAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGCGTAGAGATAAGTGCCAATGTAAGACAT
1 TAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TA-AG-TTAGTGCCAGTGTAAGACAT
*
37593033 GTCTAGGACATGCATCGGCCTCAATGATGG
61 GTCTGGGACATGCATCGGCCT-AATGATGG
* *
37593063 TAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGCTTCGTGCTAGTGTAAGACATGTCT
1 TAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAG-TTAGTGCCAGTGTAAGACATGTCT
* * * * *
37593128 GGGACATACAGT-AGCACTTATACACGAG
65 GGGACATGCA-TCGGC-CTAAT-GATG-G
* * * * *
37593156 -AGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAATGATGGTAGCCAGTGTAAGACGTG
1 TAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CT-AA-GTTAGT-GCCAGTGTAAGACATG
* *
37593220 TCTGGGACATGCATCGG-CTAA-GCTTCG
62 TCTGGGACATGCATCGGCCTAATG-ATGG
*
37593247 T-GCTAGTGTAAGACATGTCTGGGACAT
1 TAGCCAGTGTAAGACATGTCTGGGACAT
37593274 ACAGTAGCAC
Statistics
Matches: 174, Mismatches: 26, Indels: 26
0.77 0.12 0.12
Matches are distributed among these distances:
91 60 0.34
92 39 0.22
93 14 0.08
94 19 0.11
95 42 0.24
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (89 bp):
TAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGTTAGTGCCAGTGTAAGACATGTCTG
GGACATGCATCGGCCTAATGATGG
Found at i:37593172 original size:139 final size:139
Alignment explanation
Indices: 37593023--37593329 Score: 569
Period size: 139 Copynumber: 2.2 Consensus size: 139
37593013 TAAGTGCCAA
37593023 TGTAAGACATGTCTAGGACATGCATCGGCCTCAATGATGGTAGCCAGTGTAAGACATGTCTGGGA
1 TGTAAGACATGTCTAGGACATGCATCGGCCTCAATGATGGTAGCCAGTGTAAGACATGTCTGGGA
37593088 CATGCATCGGCTAAGCTTCGTGCTAGTGTAAGACATGTCTGGGACATACAGTAGCACTTATACAC
66 CATGCATCGGCTAAGCTTCGTGCTAGTGTAAGACATGTCTGGGACATACAGTAGCACTTATACAC
37593153 GAGAGCTAG
131 GAGAGCTAG
*
37593162 TGTAAGACATGTCTAGGACATGCATCGGCCTCAATGATGGTAGCCAGTGTAAGACGTGTCTGGGA
1 TGTAAGACATGTCTAGGACATGCATCGGCCTCAATGATGGTAGCCAGTGTAAGACATGTCTGGGA
37593227 CATGCATCGGCTAAGCTTCGTGCTAGTGTAAGACATGTCTGGGACATACAGTAGCACTTATACAC
66 CATGCATCGGCTAAGCTTCGTGCTAGTGTAAGACATGTCTGGGACATACAGTAGCACTTATACAC
37593292 GAGAGCTAG
131 GAGAGCTAG
* *
37593301 TGTAAGACCATGTTTGGGACATGGCATCG
1 TGTAAGA-CATGTCTAGGACAT-GCATCG
37593330 ACAACTTAAC
Statistics
Matches: 163, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
139 145 0.89
140 12 0.07
141 6 0.04
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (139 bp):
TGTAAGACATGTCTAGGACATGCATCGGCCTCAATGATGGTAGCCAGTGTAAGACATGTCTGGGA
CATGCATCGGCTAAGCTTCGTGCTAGTGTAAGACATGTCTGGGACATACAGTAGCACTTATACAC
GAGAGCTAG
Found at i:37593181 original size:48 final size:46
Alignment explanation
Indices: 37593068--37593322 Score: 170
Period size: 44 Copynumber: 5.5 Consensus size: 46
37593058 GATGGTAGCC
* * * * *
37593068 AGTGTAAGACATGTCTGGGACATGCATCG-GC-TAAGCTTC-GTGCT
1 AGTGTAAGACATGTCTGGGACATACATAGCACTTAAGC-ACGGAGCT
37593112 AGTGTAAGACATGTCTGGGACATACAGTAGCACTTATA-CACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATACA-TAGCACTTA-AGCACG-GAGCT
* * * * * *
37593160 AGTGTAAGACATGTCTAGGACATGCATCGGC-CTCAATG-ATGGTAGCC
1 AGTGTAAGACATGTCTGGGACATACAT-AGCACTTAA-GCACGG-AGCT
* * * * * *
37593207 AGTGTAAGACGTGTCTGGGACATGCATCG-GC-TAAGCTTC-GTGCT
1 AGTGTAAGACATGTCTGGGACATACATAGCACTTAAGC-ACGGAGCT
37593251 AGTGTAAGACATGTCTGGGACATACAGTAGCACTTATA-CACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATACA-TAGCACTTA-AGCACG-GAGCT
*
37593299 AGTGTAAGACCATGTTTGGGACAT
1 AGTGTAAGA-CATGTCTGGGACAT
37593323 GGCATCGACA
Statistics
Matches: 165, Mismatches: 26, Indels: 35
0.73 0.12 0.15
Matches are distributed among these distances:
44 52 0.32
45 7 0.04
46 8 0.05
47 40 0.24
48 45 0.27
49 13 0.08
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATACATAGCACTTAAGCACGGAGCT
Found at i:37594004 original size:55 final size:55
Alignment explanation
Indices: 37593916--37594019 Score: 172
Period size: 55 Copynumber: 1.9 Consensus size: 55
37593906 CTTAAATTTT
*
37593916 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGTGTGTGCCATAGCCGAGTCTA
1 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGAGTCTA
* * *
37593971 TAAGTCAGTATTGTCCACGGGTAGGCCATACGGGCGTGTGTCATGGCCG
1 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCG
37594020 TACCCTAAAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 45 1.00
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.24
Consensus pattern (55 bp):
TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGAGTCTA
Found at i:37594031 original size:55 final size:55
Alignment explanation
Indices: 37593916--37594034 Score: 168
Period size: 55 Copynumber: 2.2 Consensus size: 55
37593906 CTTAAATTTT
* **
37593916 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGTGTGTGCCATAGCCGAGTCTA
1 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGACCCTA
* * *
37593971 TAAGTCAGTATTGTCCACGGGTAGGCCATACGGGCGTGTGTCATGGCCGTACCCTA
1 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCG-ACCCTA
37594027 -AAGTCAGT
1 TAAGTCAGT
37594035 GTTGCACACA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 53 0.93
56 4 0.07
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (55 bp):
TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGACCCTA
Found at i:37596390 original size:24 final size:24
Alignment explanation
Indices: 37596246--37596389 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
37596236 GCTTTATCAT
*
37596246 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
37596271 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
37596295 ATAACTGTGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
37596319 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
37596343 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
37596367 ATACCTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
37596390 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
24 99 0.89
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:37596464 original size:19 final size:20
Alignment explanation
Indices: 37596439--37596504 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
37596429 TTATGAATAC
37596439 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
37596459 -TCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
37596478 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
37596498 ATCATGT
1 ATCATGT
37596505 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
19 19 0.43
20 25 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:37604591 original size:47 final size:48
Alignment explanation
Indices: 37604513--37604655 Score: 227
Period size: 47 Copynumber: 3.0 Consensus size: 48
37604503 GCTTTATCAT
* *
37604513 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
37604562 ATAACTGGGGCATAAG-CCTTTTAATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
37604609 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
37604656 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
47 45 0.51
48 34 0.38
49 10 0.11
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:37604610 original size:71 final size:73
Alignment explanation
Indices: 37604513--37604655 Score: 229
Period size: 71 Copynumber: 2.0 Consensus size: 73
37604503 GCTTTATCAT
*
37604513 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
37604578 -CCTTTTA
66 CCCTTTTA
* *
37604585 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAA
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
37604648 GCCCTTTT
65 GCCCTTTT
37604656 GCACTTCCTC
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
71 48 0.73
72 18 0.27
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (73 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
CCCTTTTA
Found at i:37604656 original size:24 final size:24
Alignment explanation
Indices: 37604513--37604655 Score: 227
Period size: 24 Copynumber: 6.0 Consensus size: 24
37604503 GCTTTATCAT
*
37604513 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
37604538 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
37604562 ATAACTGGGGCATAAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
37604585 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
37604609 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
37604633 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
37604656 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 12 0.11
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:37604731 original size:20 final size:20
Alignment explanation
Indices: 37604706--37604744 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
37604696 TATGAATACA
37604706 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
37604726 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
37604745 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:37604750 original size:20 final size:20
Alignment explanation
Indices: 37604707--37604751 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
37604697 ATGAATACAT
**
37604707 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
37604727 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
37604747 CATGT
1 CATGT
37604752 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:37609116 original size:72 final size:72
Alignment explanation
Indices: 37609006--37609207 Score: 250
Period size: 72 Copynumber: 2.8 Consensus size: 72
37608996 CCACATATTT
* *
37609006 TGTAATGCCCG--CATTTGAGCTACTCACTGGTCTGTACACAAAGTCAGCACCCGGACCCCAAAG
1 TGTAATGCCCGCTCA-TTGAGCTACTCACTGGTTTATACACAAAGTCAGCACCCGGACCCCAAAG
*
37609069 CATTATCA
65 CATTAACA
* * *
37609077 TGTAATGCCCGCTCATTGTGCTACTCAC-GAGTTTATACACAAAGTCAGTACCTGGACCCCAAAG
1 TGTAATGCCCGCTCATTGAGCTACTCACTG-GTTTATACACAAAGTCAGCACCCGGACCCCAAAG
37609141 CATTAACA
65 CATTAACA
* ** * *
37609149 TG-ATATGCTCGCTCAGCGAGTTACTCACTGGTTTATACACAAAGTCAGCACCCAGACCC
1 TGTA-ATGCCCGCTCATTGAGCTACTCACTGGTTTATACACAAAGTCAGCACCCGGACCC
37609208 ATATTACATC
Statistics
Matches: 112, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
71 13 0.12
72 96 0.86
73 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (72 bp):
TGTAATGCCCGCTCATTGAGCTACTCACTGGTTTATACACAAAGTCAGCACCCGGACCCCAAAGC
ATTAACA
Found at i:37614749 original size:43 final size:42
Alignment explanation
Indices: 37614681--37614873 Score: 171
Period size: 43 Copynumber: 4.5 Consensus size: 42
37614671 AATGTGACAT
* * *
37614681 TCGGGCTGT-GAGCCTACCAGACTATAGTACCGATGATATGATA
1 TCGGGCT-TCGAGCCTAGCAGGCTATAGT-CCGGTGATATGATA
* * *
37614724 TCGGGCTTCGACCCTAGCAGGCTATAATGCCGGTGAGATGATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAGT-CCGGTGATATGATA
37614767 TCGGGCTTC-AGGCCTAGCAGGCTATATGT-CGGTGAGT-TGATA
1 TCGGGCTTCGA-GCCTAGCAGGCTATA-GTCCGGTGA-TATGATA
* * * * *
37614809 TCGGGCTTCGGGCCTAGCAGGCTAAAATGT-CAGTAAGATGATA
1 TCGGGCTTCGAGCCTAGCAGGCT-ATA-GTCCGGTGATATGATA
*
37614852 TCGAGCTTCGAGCCTAGCAGGC
1 TCGGGCTTCGAGCCTAGCAGGC
37614874 GAAATGCCGG
Statistics
Matches: 126, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
42 34 0.27
43 91 0.72
44 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (42 bp):
TCGGGCTTCGAGCCTAGCAGGCTATAGTCCGGTGATATGATA
Found at i:37614813 original size:42 final size:42
Alignment explanation
Indices: 37614718--37614890 Score: 206
Period size: 43 Copynumber: 4.1 Consensus size: 42
37614708 TACCGATGAT
* *
37614718 ATGATATCGGGCTTCGACCCTAGCAGGCTATAATGCCGGTGAG
1 ATGATATCGGGCTTCGAGCCTAGCAGGCTAT-ATGTCGGTGAG
37614761 ATGATATCGGGCTTC-AGGCCTAGCAGGCTATATGTCGGTGAG
1 ATGATATCGGGCTTCGA-GCCTAGCAGGCTATATGTCGGTGAG
* * * * *
37614803 TTGATATCGGGCTTCGGGCCTAGCAGGCTAAAATGTCAGTAAG
1 ATGATATCGGGCTTCGAGCCTAGCAGGCT-ATATGTCGGTGAG
* * * *
37614846 ATGATATCGAGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA-
1 ATGATATCGGGCTTCGAGCCTAGCAGGCTATATGTCGGTGAG
37614887 ATGA
1 ATGA
37614891 GTTCAGACTT
Statistics
Matches: 113, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
41 4 0.04
42 46 0.41
43 63 0.56
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (42 bp):
ATGATATCGGGCTTCGAGCCTAGCAGGCTATATGTCGGTGAG
Found at i:37614885 original size:85 final size:85
Alignment explanation
Indices: 37614719--37614886 Score: 230
Period size: 85 Copynumber: 2.0 Consensus size: 85
37614709 ACCGATGATA
* * * *
37614719 TGATATCGGGCTTCGACCCTAGCAGGCTATAATGCCGGTGAGATGATATCGGGCTTCAGGCCTAG
1 TGATATCGGGCTTCGACCCTAGCAGGCTAAAATGCCAGTAAGATGATATCGAGCTTCAGGCCTAG
* * *
37614784 CAGGCTATATGTCGGTGAGT
66 CAGGCGAAATGCCGGTGAGT
** *
37614804 TGATATCGGGCTTCGGGCCTAGCAGGCTAAAATGTCAGTAAGATGATATCGAGCTTC-GAGCCTA
1 TGATATCGGGCTTCGACCCTAGCAGGCTAAAATGCCAGTAAGATGATATCGAGCTTCAG-GCCTA
37614868 GCAGGCGAAATGCCGGTGA
65 GCAGGCGAAATGCCGGTGA
37614887 ATGAGTTCAG
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
84 1 0.01
85 71 0.99
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (85 bp):
TGATATCGGGCTTCGACCCTAGCAGGCTAAAATGCCAGTAAGATGATATCGAGCTTCAGGCCTAG
CAGGCGAAATGCCGGTGAGT
Found at i:37615480 original size:16 final size:18
Alignment explanation
Indices: 37615449--37615481 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
37615439 AACTCGTCTC
37615449 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
37615467 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
37615482 AATTCGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:37619636 original size:93 final size:93
Alignment explanation
Indices: 37619524--37619695 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
37619514 GCCCATAAGT
* *
37619524 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37619589 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
37619617 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37619682 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
37619696 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37619691 original size:46 final size:46
Alignment explanation
Indices: 37619516--37619691 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
37619506 TGTAACCCGC
* * *
37619516 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
37619562 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
37619612 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
37619655 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37619692 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37622118 original size:30 final size:30
Alignment explanation
Indices: 37622074--37622162 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
37622064 CAAAGATAAC
37622074 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
37622103 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
37622133 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
37622163 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:37622122 original size:15 final size:15
Alignment explanation
Indices: 37622074--37622153 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
37622064 CAAAGATAAC
*
37622074 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
37622088 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
37622103 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
37622118 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
37622133 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
37622148 AAGAAA
1 AAGAAA
37622154 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:37622162 original size:15 final size:15
Alignment explanation
Indices: 37622085--37622162 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
37622075 AGAAAACCGA
37622085 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
37622100 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
37622114 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
37622129 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
37622145 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
37622160 ATA
1 ATA
37622163 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:37625134 original size:46 final size:45
Alignment explanation
Indices: 37625067--37625241 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
37625057 TGTAACCTGC
* *
37625067 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
37625113 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * **
37625159 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
37625206 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
37625242 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 1 0.01
46 68 0.65
47 33 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:37625187 original size:93 final size:93
Alignment explanation
Indices: 37625074--37625246 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
37625064 TGCCCATAAG
** *
37625074 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37625139 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
37625167 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
37625232 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
37625247 CAAATATCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:37629906 original size:43 final size:43
Alignment explanation
Indices: 37629685--37629915 Score: 281
Period size: 43 Copynumber: 5.4 Consensus size: 43
37629675 TACATTTTGA
* *
37629685 GTTGGCATTGATATGTGATTACGTGTAAGACGACGTCTAGGG-C
1 GTTGGCATCGATATGTGATTACGTGTAAGACCACGTCT-GGGAC
* * * *
37629728 ATTGGCATCGATATGTAATTATGTGTAAGACCACGTCTGGGAT
1 GTTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGAC
* * * *
37629771 GTTGGCATCGATATGTGATTACATGTAAGACCATGTTTGGGAT
1 GTTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGAC
37629814 GTTGGCATCGATATGTGATTACGTGTAAGA-CACTGTCTGGGAC
1 GTTGGCATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGAC
* * *
37629857 AG-TGGCATCGATATATGATTACATGTAAGACCACGTCTAGGAC
1 -GTTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGAC
*
37629900 GTTGGCATTG-TATGTG
1 GTTGGCATCGATATGTG
37629916 CGACTATTTG
Statistics
Matches: 162, Mismatches: 21, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
42 11 0.07
43 147 0.91
44 4 0.02
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.32
Consensus pattern (43 bp):
GTTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGAC
Found at i:37635602 original size:40 final size:41
Alignment explanation
Indices: 37635540--37635695 Score: 201
Period size: 40 Copynumber: 3.9 Consensus size: 41
37635530 GAGCATTTGA
* *
37635540 ATCATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TG
1 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGATG
* * *
37635580 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTTG
1 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGATG
*
37635621 -TCATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-
1 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGATG
* * * *
37635660 ACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCT
37635696 TGTGGTTATA
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
40 99 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (41 bp):
ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGATG
Found at i:37640630 original size:58 final size:57
Alignment explanation
Indices: 37640483--37640671 Score: 227
Period size: 58 Copynumber: 3.3 Consensus size: 57
37640473 GTGACGAGAT
* *
37640483 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGCATGCT-GAAATATA
37640541 TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGCATGCTAGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGCATGCT-GAAATATA
* *** * ** * **
37640599 TGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGC-ATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGAAAT-ATA
37640657 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
37640672 GAAATCGAGT
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
57 4 0.03
58 111 0.96
59 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.26
Consensus pattern (57 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGAAATATA
Found at i:37640634 original size:29 final size:29
Alignment explanation
Indices: 37640483--37640613 Score: 235
Period size: 29 Copynumber: 4.5 Consensus size: 29
37640473 GTGACGAGAT
37640483 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
37640512 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
37640541 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* *
37640570 TGGCACTGAGTGTGCATGCTAGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
37640599 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
37640614 GAGCTCGAAG
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 97 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:37640660 original size:87 final size:87
Alignment explanation
Indices: 37640483--37640671 Score: 220
Period size: 87 Copynumber: 2.2 Consensus size: 87
37640473 GTGACGAGAT
* * *
37640483 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTAGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
* *
37640548 AAGTGTGCATGCTGGAAAAATA
66 AAGTGTGCAGGCTGGAAAAACA
* * *
37640570 TGGCACTGAGTGTGCATGCTAGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTAGAAATATATGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
** * * **
37640634 TGTGTGTGCGGGCT-TAAATCGCA
65 TAAGTGTGCAGGCTGGAAA-AACA
37640657 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
37640672 GAAATCGAGT
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
86 3 0.04
87 81 0.95
88 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTAGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGGAAAAACA
Found at i:37644770 original size:34 final size:34
Alignment explanation
Indices: 37644725--37644793 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
37644715 ACTTAATTCC
*
37644725 TTATTCGTATGTTTTATAACATGTTGATCACTTT
1 TTATTCGTATGTTTTATAACATGCTGATCACTTT
*
37644759 TTATTCTTATGTTTTATAACATGCTGATCACTTT
1 TTATTCGTATGTTTTATAACATGCTGATCACTTT
37644793 T
1 T
37644794 CCCTTCTATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.54
Consensus pattern (34 bp):
TTATTCGTATGTTTTATAACATGCTGATCACTTT
Found at i:37656902 original size:86 final size:86
Alignment explanation
Indices: 37656745--37656968 Score: 265
Period size: 86 Copynumber: 2.6 Consensus size: 86
37656735 GTACATTTTG
** * * * * **
37656745 AGTTGGCATTGATATGTTATTACGTGTAAGACCACGTCTGGGGCATCAGCATCGATATGTAATTA
1 AGTTGGCATCAATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTAATTA
37656810 TCTGTAAGACCATGTCT-GAA
66 TCTGTAAGACCATGTCTGGAA
* *
37656830 ATGTTGGCATCAATATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCATCGATATGTGATT
1 A-GTTGGCATCAATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTAATT
* *
37656895 A-CGTGTAAGACCCTGTCTGGGAC
65 ATC-TGTAAGACCATGTCT-GGAA
* * *
37656918 AG-CGGCATCAATATATGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 AGTTGGCATCAATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
37656969 TGTATGATAT
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
85 2 0.02
86 113 0.95
87 1 0.01
88 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (86 bp):
AGTTGGCATCAATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTAATTA
TCTGTAAGACCATGTCTGGAA
Found at i:37656968 original size:43 final size:43
Alignment explanation
Indices: 37656746--37656968 Score: 218
Period size: 43 Copynumber: 5.2 Consensus size: 43
37656736 TACATTTTGA
** * * *
37656746 GTTGGCATTGATATGTTATTACGTGTAAGACCACGTCTGGGGC
1 GTTGGCATCAATATGTGATTACATGTAAGACCACGTCTGGGAC
* ** * * * ** *
37656789 ATCAGCATCGATATGTAATTATC-TGTAAGACCATGTCTGAAAT
1 GTTGGCATCAATATGTGATTA-CATGTAAGACCACGTCTGGGAC
*
37656832 GTTGGCATCAATATGTGATTACATGTAAGACCACGTCTAGGAC
1 GTTGGCATCAATATGTGATTACATGTAAGACCACGTCTGGGAC
* *
37656875 GTTGGCATCGATATGTGATTACGTGTAAGACC-CTGTCTGGGAC
1 GTTGGCATCAATATGTGATTACATGTAAGACCAC-GTCTGGGAC
* * *
37656918 AG-CGGCATCAATATATGATTACATGTAAGACCACGTTTGGGAC
1 -GTTGGCATCAATATGTGATTACATGTAAGACCACGTCTGGGAC
37656961 GTTGGCAT
1 GTTGGCAT
37656969 TGTATGATAT
Statistics
Matches: 145, Mismatches: 29, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
42 3 0.02
43 139 0.96
44 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
GTTGGCATCAATATGTGATTACATGTAAGACCACGTCTGGGAC
Found at i:37657690 original size:16 final size:16
Alignment explanation
Indices: 37657669--37657707 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
37657659 GGCTATGGCT
37657669 TATATATATAAGT-ATA
1 TATATATATAAGTGA-A
*
37657685 TATATATATATGTGAA
1 TATATATATAAGTGAA
37657701 TATATAT
1 TATATAT
37657708 GTGAATCTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.95
17 1 0.05
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (16 bp):
TATATATATAAGTGAA
Found at i:37657703 original size:12 final size:12
Alignment explanation
Indices: 37657688--37657713 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37657678 AAGTATATAT
37657688 ATATATATGTGA
1 ATATATATGTGA
37657700 ATATATATGTGA
1 ATATATATGTGA
37657712 AT
1 AT
37657714 CTTGTTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (12 bp):
ATATATATGTGA
Found at i:37666856 original size:40 final size:40
Alignment explanation
Indices: 37666810--37666942 Score: 214
Period size: 40 Copynumber: 3.3 Consensus size: 40
37666800 GCTACTCGTT
* *
37666810 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
37666850 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
37666890 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
37666930 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37666943 ATCTTAGTCT
Statistics
Matches: 88, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
40 86 0.98
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:37666979 original size:80 final size:80
Alignment explanation
Indices: 37666810--37666985 Score: 205
Period size: 80 Copynumber: 2.2 Consensus size: 80
37666800 GCTACTCGTT
*
37666810 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
* * **
37666875 ATTTAGTAACTCGCA
66 ATATAATAACTAACA
* * ** *
37666890 CAAATGCCTTCGGGACGTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCT
1 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCC
*
37666953 GGATATAATCACTTAACA
64 GGATATAATAAC-TAACA
37666971 CAAA-GCCTTCGGGAC
1 CAAATGCCTTCGGGAC
37666986 TTAGCCCAGA
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.04
80 70 0.85
81 9 0.11
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
ATATAATAACTAACA
Found at i:37669486 original size:27 final size:28
Alignment explanation
Indices: 37669430--37669499 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
37669420 AAACTTGTAC
37669430 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
37669458 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
37669485 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37669500 GACTTACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:37669510 original size:27 final size:27
Alignment explanation
Indices: 37669430--37669511 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
37669420 AAACTTGTAC
*
37669430 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGA-CTTGACT-ATAT
* *
37669458 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGACTATAT
37669485 AGCACTAAGTGTGCGGACTT-ACTATAT
1 AGCACTAAGTGTGC-GACTTGACTATAT
37669512 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
27 28 0.57
28 21 0.43
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGACTATAT
Found at i:37678302 original size:29 final size:30
Alignment explanation
Indices: 37678267--37678357 Score: 121
Period size: 29 Copynumber: 2.9 Consensus size: 30
37678257 AACCCGGATT
37678267 TAGTAACTCGCACAAATGCCTTCGGACCC-
1 TAGTAACTCGCACAAATGCCTTCGGACCCG
37678296 TAGTAACTCGCACAAATGCCTTCGGGAACCCGG
1 TAGTAACTCGCACAAATGCCTTC-GG-ACCC-G
37678329 ATTTAGTAACTCGCACAAATGCCTTCGGA
1 ---TAGTAACTCGCACAAATGCCTTCGGA
37678358 TCTTAGTCCG
Statistics
Matches: 55, Mismatches: 0, Indels: 9
0.86 0.00 0.14
Matches are distributed among these distances:
29 23 0.42
30 2 0.04
31 4 0.07
34 1 0.02
35 2 0.04
36 23 0.42
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (30 bp):
TAGTAACTCGCACAAATGCCTTCGGACCCG
Found at i:37683404 original size:39 final size:39
Alignment explanation
Indices: 37683330--37683467 Score: 197
Period size: 39 Copynumber: 3.5 Consensus size: 39
37683320 GCTACTCGTT
*
37683330 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
37683370 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* *
37683409 CAAATGCCTTCGGACTTAGTCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
*
37683448 CGAATGCCTTCGGATCTTAG
1 CAAATGCCTTCGGA-CTTAG
37683468 TCCGAAGACT
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
39 72 0.80
40 18 0.20
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:37686051 original size:40 final size:39
Alignment explanation
Indices: 37686006--37686213 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
37685996 CGGAATACAA
*
37686006 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
37686046 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
37686086 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
37686126 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
37686166 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
37686206 CCGGATAT
1 CCGGATAT
37686214 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:37686146 original size:80 final size:81
Alignment explanation
Indices: 37686006--37686211 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
37685996 CGGAATACAA
* * *
37686006 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
37686070 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
37686086 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
37686149 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
37686166 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
37686212 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:37694266 original size:39 final size:40
Alignment explanation
Indices: 37694153--37694336 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
37694143 GCTACTCGTT
*
37694153 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
37694193 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
37694233 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
37694272 CAAATGCCTTC-GGATCTTAGTCCGGA-TAAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
37694312 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37694337 CATCATTCGA
Statistics
Matches: 132, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
38 3 0.02
39 57 0.43
40 70 0.53
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:37694268 original size:79 final size:81
Alignment explanation
Indices: 37694153--37694336 Score: 254
Period size: 79 Copynumber: 2.3 Consensus size: 81
37694143 GCTACTCGTT
*
37694153 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37694216 GGATTTAGTAAC-TCGCA
65 GGA-TAAGTAACTTAGCA
**
37694233 CAAATGCCTTCGGGACTTA-CCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
37694296 GATAAGTCACTTAGCA
66 GATAAGTAACTTAGCA
37694312 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37694337 CATCATTCGA
Statistics
Matches: 94, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
78 23 0.24
79 51 0.54
80 20 0.21
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATAAGTAACTTAGCA
Found at i:37702321 original size:40 final size:40
Alignment explanation
Indices: 37702284--37702470 Score: 245
Period size: 40 Copynumber: 4.7 Consensus size: 40
37702274 GCTACTCGTT
* *
37702284 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
37702324 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
37702364 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
37702404 CAAATGCCTTC-GGATCTTAGTCCGGATATAAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
37702446 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37702471 CATCATTCGA
Statistics
Matches: 134, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
39 3 0.02
40 96 0.72
41 24 0.18
42 11 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37704895 original size:49 final size:48
Alignment explanation
Indices: 37704785--37705094 Score: 212
Period size: 49 Copynumber: 6.5 Consensus size: 48
37704775 AGATGTCGAC
* ** * * *
37704785 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCA-AAGTC-GAT
1 GCCATGTCCCAGACA-GGTCTTACACTGACTCTCATAT-ATCAGGCTGAT
*
37704833 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCATGGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCA-GGCTGAT
* * * **
37704882 GTCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAGTATCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGGCT-GAT
* * * * * * *
37704931 GCCATGTCCCCGACAGGTCTTACATTGA--CACACA-A-CAAGTTGAC
1 GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGGCTGAT
* * *
37704975 GCCATGTCCCAGACAGGTCTTACACT-AC-CTTGTATATCTCAAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTC-T-CATATATC-AGGCTGAT
* * **
37705024 G-CATGTCCCAGACATGTCTTACACT-AGCTCTCGTA-ATGTGGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCAGGCTGAT
* *
37705070 G-CAGGTCCCAGACATGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
37705095 AGCACACATA
Statistics
Matches: 209, Mismatches: 41, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
43 1 0.00
44 27 0.13
45 3 0.01
46 34 0.16
47 23 0.11
48 46 0.22
49 74 0.35
50 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGGCTGAT
Found at i:37705037 original size:48 final size:46
Alignment explanation
Indices: 37704977--37705097 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 46
37704967 AAGTTGACGC
* *
37704977 CATGTCCCAGACAGGTCTTACACTA-C-CTTGTATATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTA-ATCT---GGCCGATG
* *
37705025 CATGTCCCAGACATGTCTTACACTAGCTCTCGTAATGTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTAATCTGGCCGATG
*
37705071 CAGGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
37705098 ACACATATCA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
46 33 0.50
48 24 0.36
49 4 0.06
50 5 0.08
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTAATCTGGCCGATG
Found at i:37707166 original size:35 final size:35
Alignment explanation
Indices: 37707120--37707191 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
37707110 CCTGAAGACA
37707120 TAGAAGGAATCCAAACTATGTAACCAAGTTTCTAG
1 TAGAAGGAATCCAAACTATGTAACCAAGTTTCTAG
37707155 TAGAAGGAATCCAAACTATGTAACCAAGTTTCTAG
1 TAGAAGGAATCCAAACTATGTAACCAAGTTTCTAG
37707190 TA
1 TA
37707192 TTCATATTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (35 bp):
TAGAAGGAATCCAAACTATGTAACCAAGTTTCTAG
Found at i:37709450 original size:19 final size:20
Alignment explanation
Indices: 37709426--37709464 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
37709416 TCTTATTTTT
37709426 TATTTGTTTTT-TGTTTTAA
1 TATTTGTTTTTATGTTTTAA
37709445 TATTTGTTTTTATGTTTTAA
1 TATTTGTTTTTATGTTTTAA
37709465 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.72
Consensus pattern (20 bp):
TATTTGTTTTTATGTTTTAA
Found at i:37709482 original size:25 final size:24
Alignment explanation
Indices: 37709445--37709505 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
37709435 TTTGTTTTAA
*
37709445 TATTTG-TTT-TTATGTTTTAAATG
1 TATTTGATTTATTATATTTTAAA-G
37709468 TATTTGATTTATTATATTTTAAAG
1 TATTTGATTTATTATATTTTAAAG
* *
37709492 TTTTTTATTTATTA
1 TATTTGATTTATTA
37709506 AAAAAAAGCA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 6 0.18
24 16 0.48
25 11 0.33
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (24 bp):
TATTTGATTTATTATATTTTAAAG
Found at i:37712731 original size:2 final size:2
Alignment explanation
Indices: 37712724--37712760 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
37712714 TCGATCGGAG
37712724 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37712761 GAGTACGCAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:37712885 original size:29 final size:29
Alignment explanation
Indices: 37712861--37712983 Score: 237
Period size: 29 Copynumber: 4.2 Consensus size: 29
37712851 TCGCACACCC
*
37712861 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
37712890 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
37712919 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
37712948 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
37712977 AGTGCCA
1 AGTGCCA
37712984 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 93 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:37712886 original size:58 final size:58
Alignment explanation
Indices: 37712824--37712983 Score: 196
Period size: 58 Copynumber: 2.8 Consensus size: 58
37712814 ATTTAAGCCC
* * * *
37712824 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
37712882 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
* * **
37712940 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCA
37712984 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
58 92 0.99
59 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:37712915 original size:87 final size:87
Alignment explanation
Indices: 37712824--37712983 Score: 232
Period size: 87 Copynumber: 1.8 Consensus size: 87
37712814 ATTTAAGCCC
* * *
37712824 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCATGCACAC
1 GCACACATAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCATGCACAC
37712888 TTAGTGCCATATATTTCCAGCAT
65 TTAGTGCCATATATTTCCAGCAT
* * * **
37712911 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
1 GCACACATAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATGCACACT
37712976 TAGTGCCA
66 TAGTGCCA
37712984 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
87 63 0.98
88 1 0.02
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (87 bp):
GCACACATAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATGCACACT
TAGTGCCATATATTTCCAGCAT
Found at i:37728899 original size:14 final size:14
Alignment explanation
Indices: 37728882--37728911 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37728872 TCAAGACAAG
*
37728882 AATTAAGAACACAT
1 AATTAAGAACAAAT
37728896 AATTAAGAACAAAT
1 AATTAAGAACAAAT
37728910 AA
1 AA
37728912 AATATTTATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.10, G:0.07, T:0.20
Consensus pattern (14 bp):
AATTAAGAACAAAT
Found at i:37734973 original size:39 final size:39
Alignment explanation
Indices: 37734892--37735054 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
37734882 TATGGTAACC
* *
37734892 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
37734932 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
37734971 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
37735010 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
37735049 CGCACA
1 CGCACA
37735055 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:37742894 original size:39 final size:39
Alignment explanation
Indices: 37742813--37742975 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
37742803 TATGGTAACC
* *
37742813 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
37742853 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
37742892 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
37742931 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
37742970 CGCACA
1 CGCACA
37742976 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:37751113 original size:40 final size:39
Alignment explanation
Indices: 37751068--37751215 Score: 172
Period size: 40 Copynumber: 3.7 Consensus size: 39
37751058 ATAACCACAA
* * *** *
37751068 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTC
37751108 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
37751148 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
37751188 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCA-CAATGCCTTCGGGTCTTAGCCCGG
37751216 GTATCATTCA
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
40 93 0.97
41 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:37759118 original size:40 final size:40
Alignment explanation
Indices: 37759000--37759166 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
37758990 TCTTCGGAAT
* * *
37759000 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
37759039 TTAACCC-GATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
37759078 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
37759118 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
37759158 TTAGCCCGG
1 TTAGCCCGG
37759167 GTATCATTCA
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 33 0.31
40 71 0.68
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:37769280 original size:40 final size:40
Alignment explanation
Indices: 37769206--37769417 Score: 356
Period size: 40 Copynumber: 5.3 Consensus size: 40
37769196 GCTACTCGTT
* *
37769206 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACGTAACCCGGATT-TAGTAACTCGCA
*
37769245 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCGCA
37769285 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCGCA
*
37769325 CAAATGCCTTCGGGACGTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCGCA
*
37769365 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCGCA
37769405 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37769418 ATCTTAGTCC
Statistics
Matches: 165, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 11 0.07
40 152 0.92
41 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCGCA
Found at i:37769454 original size:80 final size:80
Alignment explanation
Indices: 37769206--37769470 Score: 286
Period size: 80 Copynumber: 3.3 Consensus size: 80
37769196 GCTACTCGTT
* * * *
37769206 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACGTAACCCGGATT-TAGTAACTCACACAAATGCCTTCGGGACGTAACCCG
* * * * *
37769269 GATTTAGTAACTCGCA
65 AATATAATAACTAGAA
*
37769285 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACGTAACCCGA
1 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCACACAAATGCCTTCGGGACGTAACCCGA
* * * *
37769350 ATTTAGTAACTCGCA
66 ATATAATAACTAGAA
* **
37769365 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCACACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCACACAAATGCCTTCGGGA-CGTAACCCG
*
37769429 AATATAATCACTTAGAA
65 AATATAATAAC-TAGAA
* * *
37769446 TAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACGTAACCCGGA
37769471 CATCATTCGA
Statistics
Matches: 166, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
79 14 0.08
80 144 0.87
81 8 0.05
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCACACAAATGCCTTCGGGACGTAACCCGA
ATATAATAACTAGAA
Found at i:37769454 original size:120 final size:120
Alignment explanation
Indices: 37769206--37769460 Score: 320
Period size: 120 Copynumber: 2.1 Consensus size: 120
37769196 GCTACTCGTT
* * * *
37769206 CAAATGCCTTC-GGACATAGCCCG-GTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACGTAACCCGAATT-TAGTAACTCGCACAAATGCCTTCGGGACGTAACCCG
* * * * * *
37769269 GATTTAGTAACTCGCACAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCGCA
65 GATTTAGTAACTCACACAAATGCCTTCGGGACGTAACCCGAATATAATAACTAGAA
37769325 CAAATGCCTTCGGGACGTAACCCGAATTTAGTAACTCGCACAAATGCCTTCGGGACGTAACCCGG
1 CAAATGCCTTCGGGACGTAACCCGAATTTAGTAACTCGCACAAATGCCTTCGGGACGTAACCCGG
* ** *
37769390 ATTTAGTAACTCACACAAATGCCTTC-GGATCTTAGTCCGAATATAATCACTTAGAA
66 ATTTAGTAACTCACACAAATGCCTTCGGGA-CGTAACCCGAATATAATAAC-TAGAA
*
37769446 TAAA-GCCTTCGGGAC
1 CAAATGCCTTCGGGAC
37769461 TTAGCCCGGA
Statistics
Matches: 117, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
119 14 0.12
120 95 0.81
121 8 0.07
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACGTAACCCGAATTTAGTAACTCGCACAAATGCCTTCGGGACGTAACCCGG
ATTTAGTAACTCACACAAATGCCTTCGGGACGTAACCCGAATATAATAACTAGAA
Found at i:37783647 original size:39 final size:39
Alignment explanation
Indices: 37783593--37784017 Score: 604
Period size: 39 Copynumber: 11.2 Consensus size: 39
37783583 TAATGGAGAA
37783593 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
37783632 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
37783671 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
** *
37783710 TTATATAAGGGCTAAGTCCCGAAGGCATTCGTACTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
37783749 TTATATCCGGGCTAAGT--------C---CGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
37783777 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
37783816 TTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
37783855 TTATATCCGAGCTAAGTCCCGAATGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
37783894 TTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
37783933 TTATATCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
37783972 TTATATCCAGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
37784011 TTATATC
1 TTATATC
37784018 TGAGCTTAAA
Statistics
Matches: 344, Mismatches: 30, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
28 24 0.07
31 1 0.00
36 1 0.00
39 306 0.89
40 12 0.03
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:37783796 original size:145 final size:146
Alignment explanation
Indices: 37783622--37784016 Score: 542
Period size: 145 Copynumber: 2.6 Consensus size: 146
37783612 CGAAGGCATT
37783622 CGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAG
1 CGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAG
* *
37783687 TCCCGAAGGCATTCGTGCTGGTGTTATATAAGGGCTAAGTCCCGAAGGCATTCGTACTGGTGTTA
66 TCCCGAAGGCATTCGTGCTGGTATTATATAAGAGCTAAGTCCCGAAGGCATTCGTACTGGTGTTA
37783752 TATCCGGGCTAAGT-C
131 TATCCGGGCTAAGTCC
* *
37783767 CGTGCTGGTATTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAG
1 CGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAG
* ** * * *
37783832 TCCCGAAGGCATTCATGCTGGTATTATATCCGAGCTAAGTCCCGAATGCATTTGTGCTGGTGTTA
66 TCCCGAAGGCATTCGTGCTGGTATTATATAAGAGCTAAGTCCCGAAGGCATTCGTACTGGTGTTA
37783897 TATCCGGGCTAAGTCC
131 TATCCGGGCTAAGTCC
* *
37783913 CGAAGGCATTCATGCTGGTGTTATATCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT
1 C----G------TGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT
* * *
37783978 CCAGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTATTATAT
56 CCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTATTATAT
37784017 CTGAGCTTAA
Statistics
Matches: 220, Mismatches: 18, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
145 134 0.61
146 2 0.01
150 1 0.00
156 71 0.32
157 12 0.05
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.30
Consensus pattern (146 bp):
CGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAG
TCCCGAAGGCATTCGTGCTGGTATTATATAAGAGCTAAGTCCCGAAGGCATTCGTACTGGTGTTA
TATCCGGGCTAAGTCC
Found at i:37783853 original size:106 final size:106
Alignment explanation
Indices: 37783661--37783991 Score: 446
Period size: 106 Copynumber: 3.0 Consensus size: 106
37783651 CGAAGGCATT
*
37783661 CGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATAAGGGCTAAG
1 CGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCAGGGCTAAG
*
37783726 TCCCGAAGGCATTCGTACTGGTGTTATATCCGGGCTAAGTC
66 TCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTC
* * *
37783767 CGTGCTGGTATTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAG
1 CGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCAGGGCTAAG
* * *
37783832 TCCCGAAGGCATTCATGCTGGTATTATATCCGAGCTAAGTCCC
66 TCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGT--C
*
37783875 GAATGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTGTTATATC
1 -----C----GTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATC
* * *
37783940 TGGGTTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCAGGCTAAAGTC
57 AGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT-AAGTC
37783991 C
1 C
37783992 CGCAGGCTTT
Statistics
Matches: 196, Mismatches: 17, Indels: 19
0.84 0.07 0.08
Matches are distributed among these distances:
106 97 0.49
108 1 0.01
111 1 0.01
113 1 0.01
116 1 0.01
117 91 0.46
118 4 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (106 bp):
CGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCAGGGCTAAG
TCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTC
Found at i:37783908 original size:184 final size:184
Alignment explanation
Indices: 37783592--37783951 Score: 612
Period size: 184 Copynumber: 2.0 Consensus size: 184
37783582 ATAATGGAGA
*
37783592 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
1 ATTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
* * *
37783657 CATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATAAGGGC
66 CATTCATGCTGGTATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATAAGGGC
*
37783722 TAAGTCCCGAAGGCATTCGTACTGGTGTTATATCCGGGCTAAGTCCGTGCTGGT
131 TAAGTCCCGAAGGCATTCATACTGGTGTTATATCCGGGCTAAGTCCGTGCTGGT
37783776 ATTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
1 ATTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
* * **
37783841 CATTCATGCTGGTATTATATCCGAGCTAAGTCCCGAATGCATTTGTGCTGGTGTTATATCCGGGC
66 CATTCATGCTGGTATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATAAGGGC
* * *
37783906 TAAGTCCCGAAGGCATTCATGCTGGTGTTATATCTGGGTTAAGTCC
131 TAAGTCCCGAAGGCATTCATACTGGTGTTATATCCGGGCTAAGTCC
37783952 CGAAGGCATT
Statistics
Matches: 164, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
184 164 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.30
Consensus pattern (184 bp):
ATTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
CATTCATGCTGGTATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATAAGGGC
TAAGTCCCGAAGGCATTCATACTGGTGTTATATCCGGGCTAAGTCCGTGCTGGT
Found at i:37792823 original size:68 final size:67
Alignment explanation
Indices: 37792751--37792900 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
37792741 CATCATGTGT
* * * *
37792751 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
37792813 ATGTAG
62 ATGTAG
** * *
37792819 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
37792884 AG
66 AG
37792886 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
37792901 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Done.