Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 147 of 378
Found at i:42171676 original size:21 final size:20
Alignment explanation
Indices: 42171642--42171681 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
42171632 GTCATAGTGG
*
42171642 CCACACGAATGTGTTGCCCTT
1 CCACACGAACGTG-TGCCCTT
*
42171663 CCACACGAGCGTGTGCCCT
1 CCACACGAACGTGTGCCCT
42171682 ATTTCAAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.23
Consensus pattern (20 bp):
CCACACGAACGTGTGCCCTT
Found at i:42174991 original size:50 final size:49
Alignment explanation
Indices: 42174927--42175065 Score: 166
Period size: 46 Copynumber: 2.9 Consensus size: 49
42174917 TTTGACATGA
* * * *
42174927 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CATTCA-TTTCATATCACGT
*
42174977 TGCCATGGTATCTTTCAACCATGGTCTTA-CA--CATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTCATTTCATATCACGT
42175023 TGCCATGGTATCTTTCAACCATGGTCTTA-CA--CATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTCATTTCATATCA
42175066 GAAAGCACAC
Statistics
Matches: 83, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
45 4 0.05
46 51 0.61
48 2 0.02
50 26 0.31
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (49 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACCATTCATTTCATATCACGT
Found at i:42175029 original size:46 final size:46
Alignment explanation
Indices: 42174975--42175066 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
42174965 TTTCTGTCAC
42174975 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
42175021 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
42175067 AAAGCACACT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:42177168 original size:16 final size:16
Alignment explanation
Indices: 42177149--42177187 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
42177139 AATTTTTCCC
*
42177149 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
42177165 TTTTTCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
42177181 TCTTTCC
1 TTTTTCC
42177188 CCTGCTCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:42177262 original size:2 final size:2
Alignment explanation
Indices: 42177255--42177288 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
42177245 CCTTTTACTT
42177255 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
42177289 CAATAACTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:42180461 original size:39 final size:39
Alignment explanation
Indices: 42180416--42180497 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
42180406 AAGCAAGACA
42180416 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
42180455 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
42180494 CTGG
1 CTGG
42180498 TAACATAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:42187108 original size:39 final size:39
Alignment explanation
Indices: 42187063--42187144 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
42187053 AAGCAAGACA
*
42187063 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGACTTCGTG
* *
42187102 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGACTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGACTTCGTG
42187141 CTGG
1 CTGG
42187145 TAACATAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGACTTCGTG
Found at i:42194361 original size:47 final size:47
Alignment explanation
Indices: 42194295--42194417 Score: 130
Period size: 47 Copynumber: 2.6 Consensus size: 47
42194285 GTGTGCTAGC
**
42194295 GTAAGA-CATGTCTAAGACATGCATCGGCCACATT-ATGAGAGCTAAT
1 GTAAGACCATGTCTGGGACATGCATCGGCC-CATTGATGAGAGCTAAT
* *
42194341 GTAAGACCATGTCTGGGACATGGCATCGG--CATTGAGATGAGATCTAGT
1 GTAAGACCATGTCTGGGACAT-GCATCGGCCCATT--GATGAGAGCTAAT
*
42194389 GTAAG-CCATGTCTGGGACATACATCGGCC
1 GTAAGACCATGTCTGGGACATGCATCGGCC
42194418 TCGAGATCTA
Statistics
Matches: 65, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
45 4 0.06
46 12 0.18
47 27 0.42
48 22 0.34
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (47 bp):
GTAAGACCATGTCTGGGACATGCATCGGCCCATTGATGAGAGCTAAT
Found at i:42194436 original size:46 final size:45
Alignment explanation
Indices: 42194340--42194655 Score: 146
Period size: 49 Copynumber: 6.7 Consensus size: 45
42194330 TGAGAGCTAA
* * * *
42194340 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGATCTAG
1 TGTAAG-CCATGTCTGGGACAT-GCATCGGCATCGAGATTA-AGCCAG
* *
42194388 TGTAAGCCATGTCTGGGACATACATCGGCCTCGAGATCTAAGCCAG
1 TGTAAGCCATGTCTGGGACATGCATCGGCATCGAGAT-TAAGCCAG
* * * *
42194434 TGTAAGAC-TTTCTGGGACATGCATC-GAATACGAGATGT--GTCAG
1 TGTAAGCCATGTCTGGGACATGCATCGGCAT-CGAGAT-TAAGCCAG
* ** * * *
42194477 TGTAAGCCAATGTCTGGGACATGGCATTGAAACCAGTAGATGAAAACCAG
1 TGTAAGCC-ATGTCTGGGACAT-GCATCGGCATC-G-AGAT-TAAGCCAG
* * *
42194527 TGTAAGACC-TGTCTGGGACATGGCATCGGCCTCGATATATGAAAGTCAG
1 TGTAAG-CCATGTCTGGGACAT-GCATCGGCATCGAGAT-T--AAGCCAG
* *
42194576 TGTAAGACCTAT-T-TGGGACATGGCATCGAC-TTGATGGA-TAAGCCAG
1 TGTAAG-CC-ATGTCTGGGACAT-GCATCGGCATCGA--GATTAAGCCAG
* *
42194622 TGTAAATACCATGTCTAGGACATGGCATCGGCAT
1 TGT-AA-GCCATGTCTGGGACAT-GCATCGGCAT
42194656 TATACCCTAT
Statistics
Matches: 208, Mismatches: 38, Indels: 43
0.72 0.13 0.15
Matches are distributed among these distances:
43 11 0.05
44 2 0.01
45 33 0.16
46 40 0.19
47 27 0.13
48 31 0.15
49 50 0.24
50 11 0.05
51 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (45 bp):
TGTAAGCCATGTCTGGGACATGCATCGGCATCGAGATTAAGCCAG
Found at i:42194493 original size:45 final size:44
Alignment explanation
Indices: 42194340--42194499 Score: 153
Period size: 45 Copynumber: 3.5 Consensus size: 44
42194330 TGAGAGCTAA
* *
42194340 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGATCTAG
1 TGTAAG-CCATGTCTGGGACAT-GCATCGGCATCGAGATGTG-TC-AG
* * * *
42194388 TGTAAGCCATGTCTGGGACATACATCGGCCTCGAGATCTAAGCCAG
1 TGTAAGCCATGTCTGGGACATGCATCGGCATCGAGATGT--GTCAG
* * *
42194434 TGTAAGAC-TTTCTGGGACATGCATC-GAATACGAGATGTGTCAG
1 TGTAAGCCATGTCTGGGACATGCATCGGCAT-CGAGATGTGTCAG
42194477 TGTAAGCCAATGTCTGGGACATG
1 TGTAAGCC-ATGTCTGGGACATG
42194500 GCATTGAAAC
Statistics
Matches: 92, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
43 11 0.12
44 2 0.02
45 34 0.37
46 22 0.24
47 16 0.17
48 7 0.08
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (44 bp):
TGTAAGCCATGTCTGGGACATGCATCGGCATCGAGATGTGTCAG
Found at i:42202599 original size:13 final size:13
Alignment explanation
Indices: 42202583--42202615 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
42202573 TTTAATTAAA
*
42202583 TTAGTTAATTAGT
1 TTAGATAATTAGT
42202596 TTAGATAATTAGT
1 TTAGATAATTAGT
42202609 TTA-ATAA
1 TTAGATAA
42202616 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:42206982 original size:37 final size:37
Alignment explanation
Indices: 42206929--42207031 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
42206919 CGAATAGTCC
*
42206929 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
42206966 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
42207003 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
42207032 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:42207230 original size:48 final size:48
Alignment explanation
Indices: 42207172--42207337 Score: 323
Period size: 48 Copynumber: 3.5 Consensus size: 48
42207162 ATATACACAC
*
42207172 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
42207220 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
42207268 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
42207316 ATCTCATACATATTTCACATTA
1 ATCTCATACATATTTCACATTA
42207338 TCCAAATACA
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 117 1.00
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:42207357 original size:96 final size:95
Alignment explanation
Indices: 42207172--42207357 Score: 284
Period size: 96 Copynumber: 1.9 Consensus size: 95
42207162 ATATACACAC
*
42207172 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* ***
42207237 CATTAGCCATTCGGCTTTACCACATATACAT
66 CATTAGCCATACAAATTTA-CACATATACAT
42207268 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
42207333 CATTATCCAAATACAAATTT-CACAT
66 CATTAGCC--ATACAAATTTACACAT
42207358 TAGCCATTCG
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
96 76 0.93
98 6 0.07
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (95 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATACAAATTTACACATATACAT
Found at i:42207390 original size:69 final size:70
Alignment explanation
Indices: 42207273--42207406 Score: 243
Period size: 69 Copynumber: 1.9 Consensus size: 70
42207263 TACATATCTC
*
42207273 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
1 ATACAAATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
42207338 TCCAA
66 TCCAA
*
42207343 ATACAAATTTCACATTAGCCATTC-GCTTTACCACATATACATATCTCATACGTATTTCACATTA
1 ATACAAATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
42207407 GCCATTCGGC
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
69 39 0.63
70 23 0.37
ACGTcount: A:0.34, C:0.25, G:0.04, T:0.36
Consensus pattern (70 bp):
ATACAAATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
TCCAA
Found at i:42207399 original size:117 final size:117
Alignment explanation
Indices: 42207225--42207453 Score: 415
Period size: 117 Copynumber: 2.0 Consensus size: 117
42207215 TACATATCTC
*
42207225 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
1 ATACAAATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
42207290 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTATCCAA
66 GCCATTCGGCTTTACCACATATACA-ATCTCATACATATTTCACATTATCCAA
*
42207343 ATACAAATTTCACATTAGCCATTC-GCTTTACCACATATACATATCTCATACGTATTTCACATTA
1 ATACAAATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
*
42207407 GCCATTCGGCTTTACCACATATACAATCTCATACGTATTTCACATTA
66 GCCATTCGGCTTTACCACATATACAATCTCATACATATTTCACATTA
42207454 GCCATTCGGC
Statistics
Matches: 108, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
116 21 0.19
117 64 0.59
118 23 0.21
ACGTcount: A:0.33, C:0.26, G:0.06, T:0.35
Consensus pattern (117 bp):
ATACAAATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
GCCATTCGGCTTTACCACATATACAATCTCATACATATTTCACATTATCCAA
Found at i:42207475 original size:95 final size:96
Alignment explanation
Indices: 42207343--42207711 Score: 645
Period size: 95 Copynumber: 3.9 Consensus size: 96
42207333 CATTATCCAA
* * *
42207343 ATACAAATTTCACATTAGCCATTC-GCTTTACCACATATACATATCTCATACGTATTTCACATTA
1 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
42207407 GCCATTCGGCTTTACCACATATACA-ATCTC
66 GCCATTCGGCTTTACCACATATACATATCTC
* *
42207437 ATACGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
1 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
42207502 GCCATTCGGC-TTACCACATATACATATCTC
66 GCCATTCGGCTTTACCACATATACATATCTC
* * *
42207532 ATACATATTTCGCACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCACTA
1 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
42207597 GCCATTCGGCTTTACCACATATACATATCTC
66 GCCATTCGGCTTTACCACATATACATATCTC
42207628 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
1 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
42207693 GCCATTCGGCTTTACCACA
66 GCCATTCGGCTTTACCACA
42207712 CACATATATA
Statistics
Matches: 261, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
94 36 0.14
95 124 0.48
96 101 0.39
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (96 bp):
ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
GCCATTCGGCTTTACCACATATACATATCTC
Found at i:42207503 original size:48 final size:48
Alignment explanation
Indices: 42207343--42207711 Score: 645
Period size: 48 Copynumber: 7.8 Consensus size: 48
42207333 CATTATCCAA
*
42207343 ATACAAATTTCACATTAGCCATTC-GCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
*
42207390 ATACGTATTTCACATTAGCCATTCGGCTTTACCACATATACA-ATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
*
42207437 ATACGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
42207485 ATACATATTTCACATTAGCCATTCGGC-TTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
* *
42207532 ATACATATTTCGCACTAGCCATTCGGCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
* *
42207580 ATACATATTTCGCACTAGCCATTCGGCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
*
42207628 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
42207676 ATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACA
42207712 CACATATATA
Statistics
Matches: 312, Mismatches: 7, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
47 114 0.37
48 198 0.63
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
Found at i:42211058 original size:40 final size:40
Alignment explanation
Indices: 42211013--42211291 Score: 486
Period size: 40 Copynumber: 7.0 Consensus size: 40
42211003 GAATACACAT
* * *
42211013 CACCAGCACGATTGCTCTTCGGGACCTAGCTCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
42211053 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
42211093 CACCAGCACGAATGCTCTTTGGGGCTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
42211133 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
42211173 CACCAGCAAGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
42211213 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
42211253 CACCAGTACGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
42211292 TAACTCTCAA
Statistics
Matches: 228, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 228 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:42213832 original size:70 final size:71
Alignment explanation
Indices: 42213749--42213911 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
42213739 CGATTTGTCT
42213749 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
42213813 CTTTCA
66 CTTTCA
42213819 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
42213884 CTTTCA
66 CTTTCA
42213890 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
42213912 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:42213949 original size:71 final size:70
Alignment explanation
Indices: 42213749--42213945 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
42213739 CGATTTGTCT
* * * *
42213749 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
42213813 CTTTCA
65 CTTTCA
* * * *
42213819 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
42213884 CTTTCA
65 CTTTCA
* *
42213890 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
42213946 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 53 0.45
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:42221339 original size:66 final size:68
Alignment explanation
Indices: 42221261--42221447 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
42221251 TAGTACCACT
*
42221261 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
42221323 CACG
65 CACG
42221327 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
42221392 ATCACG
63 ATCACG
42221398 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
42221448 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:42221372 original size:71 final size:71
Alignment explanation
Indices: 42221284--42221447 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
42221274 CGATTTGTCT
42221284 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
42221349 CTTTCA
66 CTTTCA
42221355 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
42221420 CTTTCA
66 CTTTCA
42221426 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
42221448 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:42221485 original size:71 final size:70
Alignment explanation
Indices: 42221284--42221481 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
42221274 CGATTTGTCT
* * * *
42221284 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
42221349 CTTTCA
65 CTTTCA
* * * *
42221355 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
42221420 CTTTCA
65 CTTTCA
* *
42221426 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
42221482 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:42223912 original size:39 final size:39
Alignment explanation
Indices: 42223814--42223993 Score: 168
Period size: 40 Copynumber: 4.5 Consensus size: 39
42223804 TCGAATGATG
* * * *
42223814 TCCGGGCTAAGTCCCGAAAGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTATGC-GAGTTACTA-A
* * *
42223854 TCCGGACTAAGAT-CCGAAGGAATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTATGCGAGTTACTAA
42223893 TCCCGGGCTAAG-CCCGAAGGCATTTATGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTACT-AA
* * *
42223933 TTCGGGTTAAGTCCCGAAGGCATTTACGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTACTA-A
* * *
42223973 ACCGGGCTATGTCTCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
42223994 GTTTGAACGA
Statistics
Matches: 117, Mismatches: 16, Indels: 14
0.80 0.11 0.10
Matches are distributed among these distances:
39 33 0.28
40 76 0.65
41 8 0.07
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTACTAA
Found at i:42226222 original size:37 final size:37
Alignment explanation
Indices: 42226169--42226271 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
42226159 CGAATAGTCC
*
42226169 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
42226206 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
42226243 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
42226272 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:42226474 original size:48 final size:48
Alignment explanation
Indices: 42226422--42226788 Score: 680
Period size: 48 Copynumber: 7.6 Consensus size: 48
42226412 ATCTCCTACA
42226422 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCG
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCG
*
42226470 TATTTCACATTAGCGATTCGGCTTTACCACATATACATATCTCATGCG
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCG
42226518 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCG
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCG
42226566 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCG
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCG
*
42226614 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACG
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCG
*
42226662 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACG
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCG
* * *
42226710 TATTTCACATTAGGCATTCGGCTTTACCACATATACATATCTCATACA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCG
42226758 TATTTCACATTAGCCATTCGGCTTTACCACA
1 TATTTCACATTAGCCATTCGGCTTTACCACA
42226789 CACATATATA
Statistics
Matches: 313, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 313 1.00
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (48 bp):
TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCG
Found at i:42228905 original size:34 final size:34
Alignment explanation
Indices: 42228867--42228934 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
42228857 CGTATAATCT
42228867 TATGCTTTACTCGAATCTTCAGTGAAACCTTTAG
1 TATGCTTTACTCGAATCTTCAGTGAAACCTTTAG
42228901 TATGCTTTACTCGAATCTTCAGTGAAACCTTTAG
1 TATGCTTTACTCGAATCTTCAGTGAAACCTTTAG
42228935 CTCGAATAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (34 bp):
TATGCTTTACTCGAATCTTCAGTGAAACCTTTAG
Found at i:42229000 original size:37 final size:37
Alignment explanation
Indices: 42228947--42229049 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
42228937 CGAATAGTCC
*
42228947 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
42228984 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
42229021 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
42229050 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:42229248 original size:48 final size:48
Alignment explanation
Indices: 42229190--42229307 Score: 227
Period size: 48 Copynumber: 2.5 Consensus size: 48
42229180 ATATACACAC
*
42229190 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
42229238 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
42229286 ATCTCATACATATTTCACATTA
1 ATCTCATACATATTTCACATTA
42229308 TCCAAATACA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:42229326 original size:70 final size:70
Alignment explanation
Indices: 42229243--42229377 Score: 243
Period size: 70 Copynumber: 1.9 Consensus size: 70
42229233 TACATATCTC
* *
42229243 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
1 ATACAAATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTA
42229308 TCCAA
66 TCCAA
*
42229313 ATACAAATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACGTATTTCACATTA
1 ATACAAATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTA
42229378 GCCATTCGGC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.36
Consensus pattern (70 bp):
ATACAAATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTA
TCCAA
Found at i:42229327 original size:48 final size:47
Alignment explanation
Indices: 42229190--42229327 Score: 143
Period size: 48 Copynumber: 2.9 Consensus size: 47
42229180 ATATACACAC
* * ***
42229190 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATACAAATTTA-CACATATACAT
* ***
42229238 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATACAAATTTA-CACATATACAT
*
42229286 ATCTCATACATATTTCACATTATCCAAATACAAATTT-CACAT
1 ATCTCATACATATTTCACATTAGCC--ATACAAATTTACACAT
42229328 TAGCCATTCA
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
48 76 0.93
50 6 0.07
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.36
Consensus pattern (47 bp):
ATCTCATACATATTTCACATTAGCCATACAAATTTACACATATACAT
Found at i:42229350 original size:118 final size:118
Alignment explanation
Indices: 42229196--42229425 Score: 424
Period size: 118 Copynumber: 1.9 Consensus size: 118
42229186 ACACATCTCC
* *
42229196 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACAAATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
42229261 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTATCCAAA
66 CCATTCGGCTTTACCACATATACAAATCTCATACATATTTCACATTATCCAAA
*
42229314 TACAAATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACGTATTTCACATTAG
1 TACAAATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAG
42229379 CCATTCGGCTTTACCACATATACAAATCTCATACATATTTCACATTA
66 CCATTCGGCTTTACCACATATACAAATCTCATACATATTTCACATTA
42229426 GCCATTCGGC
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
118 108 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.35
Consensus pattern (118 bp):
TACAAATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACAAATCTCATACATATTTCACATTATCCAAA
Found at i:42229371 original size:48 final size:48
Alignment explanation
Indices: 42229313--42229732 Score: 741
Period size: 48 Copynumber: 8.8 Consensus size: 48
42229303 CATTATCCAA
* *
42229313 ATACAAATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
* *
42229361 ATACGTATTTCACATTAGCCATTCGGCTTTACCACATATACAAATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
42229409 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
*
42229457 ATACATATTTCACATTAGCCATTCGGCTCTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
* *
42229505 ATACATATTTCGCATTAGCCATTCGGCTCTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
* *
42229553 ATACATATTTCGCACTAGCCATTCGGCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
*
42229601 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
*
42229649 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
42229697 ATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACA
42229733 CACATATATA
Statistics
Matches: 360, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 360 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
Found at i:42233626 original size:6 final size:6
Alignment explanation
Indices: 42233615--42233689 Score: 80
Period size: 6 Copynumber: 12.3 Consensus size: 6
42233605 AATCCTCCTA
* *
42233615 TTTTAT TTTTAT TTTTAT TTTTA- TTTTAT TTTATTT ATTTTAT TCTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT -TTTTAT TTTTAT
* * *
42233664 TTTTCT TTTGAT TTTTAT TTTCAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
42233690 CAATTTCCTT
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
5 5 0.09
6 45 0.79
7 4 0.07
8 3 0.05
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:42237468 original size:39 final size:40
Alignment explanation
Indices: 42237368--42237558 Score: 176
Period size: 40 Copynumber: 4.8 Consensus size: 40
42237358 TCGAATGATG
* * * *
42237368 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAATTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTT-ACTAAA
* * *
42237408 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
42237448 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * **
42237486 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
42237527 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
42237559 CGTTATATCA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.18
39 23 0.19
40 67 0.54
41 12 0.10
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:42237513 original size:78 final size:80
Alignment explanation
Indices: 42237368--42237549 Score: 203
Period size: 78 Copynumber: 2.3 Consensus size: 80
42237358 TCGAATGATG
* * * *
42237368 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAATTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAATTGACTAAACCCGGACTAAGATCCGAAGGCATTC
42237433 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
**
42237448 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTT-ACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAA-TTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
***
42237509 TCGTGCGAGTCGCTATAA
64 TCGTGCGAGTTAATA-AA
**
42237527 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
42237550 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 44 0.51
79 31 0.36
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAATTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:42240297 original size:42 final size:42
Alignment explanation
Indices: 42240205--42240297 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 42
42240195 CTCCCCACAT
* *
42240205 GAGCTTAAGTGATAAGTTGTGTATCAGCAAAGCCCTCTATGT
1 GAGCTTAAGTGATAAGTTGTGTATCAGCAAAGCCCTCCATGC
42240247 GAGCTTAAGTGATAAGTTGTGTATCAGCAAAGCTCC-CCATGC
1 GAGCTTAAGTGATAAGTTGTGTATCAGCAAAGC-CCTCCATGC
*
42240289 GAGTTTAAG
1 GAGCTTAAG
42240298 GTACAATGTG
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 45 0.96
43 2 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (42 bp):
GAGCTTAAGTGATAAGTTGTGTATCAGCAAAGCCCTCCATGC
Found at i:42242178 original size:40 final size:40
Alignment explanation
Indices: 42242094--42242278 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
42242084 TCGAATGATG
* *
42242094 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
42242133 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
42242174 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
42242213 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
42242252 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
42242279 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:42242230 original size:79 final size:81
Alignment explanation
Indices: 42242094--42242276 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
42242084 TCGAATGATG
* *
42242094 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
42242158 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
42242173 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
42242235 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
42242253 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
42242277 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:42242300 original size:79 final size:78
Alignment explanation
Indices: 42242095--42242311 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
42242085 CGAATGATGT
* *
42242095 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
42242158 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
42242175 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
42242238 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
42242254 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
42242312 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:42250301 original size:39 final size:40
Alignment explanation
Indices: 42250206--42250389 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
42250196 TCGAATGATG
* *
42250206 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
* *
42250247 T--GGACTAAGAT-CCGAAGACATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
42250285 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
42250324 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
42250363 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
42250390 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
38 3 0.03
39 56 0.47
40 60 0.50
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:42250411 original size:79 final size:79
Alignment explanation
Indices: 42250265--42250412 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 79
42250255 GATCCGAAGA
* **
42250265 CATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGG
1 CATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGGG
42250330 TTAAGTCCCAAAGG
66 TTAAGTCCCAAAGG
* * *
42250344 CATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC
1 CATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAATCC
42250407 -GGTTAA
63 GGGTTAA
42250413 ATTCCGAAGG
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 34 0.57
80 24 0.40
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (79 bp):
CATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGGG
TTAAGTCCCAAAGG
Found at i:42254047 original size:43 final size:43
Alignment explanation
Indices: 42253993--42254079 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
42253983 TGATATATGT
* * *
42253993 AGCATCTGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGCG
1 AGCATCCGAGCTCGTTGAGTGGTACGAGTTCATAATGGATGCG
*
42254036 AGCATCCGAGCTCGTTGAGTGGTATGAGTTCATAATGGATGCG
1 AGCATCCGAGCTCGTTGAGTGGTACGAGTTCATAATGGATGCG
42254079 A
1 A
42254080 TACATGTGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (43 bp):
AGCATCCGAGCTCGTTGAGTGGTACGAGTTCATAATGGATGCG
Found at i:42258399 original size:49 final size:49
Alignment explanation
Indices: 42258342--42258497 Score: 246
Period size: 49 Copynumber: 3.2 Consensus size: 49
42258332 TATGATATAC
* * *
42258342 ATATATGTGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTG-
1 ATATATATGTGATAAGGCC-TAATGGCCGATGTGGTGAATGTGAAAGTGT
42258390 -TATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
*
42258438 ATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
42258487 ATATATATGTG
1 ATATATATGTG
42258498 CTAATGTGAA
Statistics
Matches: 100, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
46 1 0.01
47 42 0.42
49 57 0.57
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.31
Consensus pattern (49 bp):
ATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
Found at i:42258414 original size:47 final size:47
Alignment explanation
Indices: 42258343--42258492 Score: 239
Period size: 47 Copynumber: 3.1 Consensus size: 47
42258333 ATGATATACA
* * *
42258343 TATATGTGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCC-TAATGGCCGATGTGGTGAATGTGAAAGTG
42258390 TATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
42258437 TATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
1 TA--TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
42258486 TATATAT
1 TATATAT
42258493 ATGTGCTAAT
Statistics
Matches: 97, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
46 1 0.01
47 49 0.51
49 47 0.48
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.31
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
Found at i:42258609 original size:37 final size:37
Alignment explanation
Indices: 42258559--42258673 Score: 221
Period size: 37 Copynumber: 3.1 Consensus size: 37
42258549 GTTCCAGGTG
42258559 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
42258596 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
*
42258633 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
42258670 AGAC
1 AGAC
42258674 TTCGTAATAA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 77 1.00
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:42260189 original size:18 final size:17
Alignment explanation
Indices: 42260133--42260196 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 17
42260123 GTCTTATTAC
*
42260133 ATGCGAACCCTAAAAAAT
1 ATGCGAACCC-ATAAAAT
* **
42260151 ATGCGAACCTATACATGT
1 ATGCGAACCCATA-AAAT
42260169 ATGCGAACCCATGAAAAT
1 ATGCGAACCCAT-AAAAT
*
42260187 ATGCTAACCC
1 ATGCGAACCC
42260197 CACCAATGTA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
17 2 0.06
18 33 0.92
19 1 0.03
ACGTcount: A:0.41, C:0.25, G:0.14, T:0.20
Consensus pattern (17 bp):
ATGCGAACCCATAAAAT
Found at i:42265754 original size:18 final size:18
Alignment explanation
Indices: 42265731--42265765 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
42265721 AAGCATCTAT
42265731 GTTGACACAACCAGTATC
1 GTTGACACAACCAGTATC
42265749 GTTGACACAACCAGTAT
1 GTTGACACAACCAGTAT
42265766 TGAAAAAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (18 bp):
GTTGACACAACCAGTATC
Found at i:42283962 original size:30 final size:30
Alignment explanation
Indices: 42283926--42283982 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
42283916 CGCTATGGTG
42283926 TCAACCAGTTTCCCTTTCCCTTTATCAGCA
1 TCAACCAGTTTCCCTTTCCCTTTATCAGCA
*
42283956 TCAACCATTTTCCCTTTCCCTTTATCA
1 TCAACCAGTTTCCCTTTCCCTTTATCA
42283983 TTCCTGCTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.19, C:0.37, G:0.04, T:0.40
Consensus pattern (30 bp):
TCAACCAGTTTCCCTTTCCCTTTATCAGCA
Found at i:42287963 original size:6 final size:6
Alignment explanation
Indices: 42287954--42287988 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
42287944 TTTGGGTTTG
*
42287954 GATTTC GATTTC GATTTC GATTTC GATTTG GATTT
1 GATTTC GATTTC GATTTC GATTTC GATTTC GATTT
42287989 GAATTTGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.11, G:0.20, T:0.51
Consensus pattern (6 bp):
GATTTC
Found at i:42287989 original size:6 final size:6
Alignment explanation
Indices: 42287944--42288012 Score: 57
Period size: 6 Copynumber: 11.5 Consensus size: 6
42287934 GGGATTAGGG
* * * * * *
42287944 TTTGGG TTTGGA TTTCGA TTTCGA TTTCGA TTTCGA TTTGGA TTTGAA
1 TTTGGA TTTGGA TTTGGA TTTGGA TTTGGA TTTGGA TTTGGA TTTGGA
* * *
42287992 TTTGAA TTTTGA TTTTGA TTT
1 TTTGGA TTTGGA TTTGGA TTT
42288013 TTGGGGATGA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 57 1.00
ACGTcount: A:0.17, C:0.06, G:0.22, T:0.55
Consensus pattern (6 bp):
TTTGGA
Found at i:42288741 original size:5 final size:5
Alignment explanation
Indices: 42288731--42288763 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
42288721 TTGTGTGTTC
42288731 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
42288764 TCACAAATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:42293137 original size:5 final size:5
Alignment explanation
Indices: 42293127--42293158 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
42293117 TTGTGTGTTC
42293127 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
42293159 TCACATATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:42293141 original size:9 final size:9
Alignment explanation
Indices: 42293127--42293157 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
42293117 TTGTGTGTTC
42293127 TTTATTTTA
1 TTTATTTTA
42293136 TTTATTTTA
1 TTTATTTTA
42293145 TTTTATTTTA
1 -TTTATTTTA
42293155 TTT
1 TTT
42293158 TTCACATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:42294055 original size:4 final size:4
Alignment explanation
Indices: 42294046--42294072 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
42294036 AAACTGCAAA
42294046 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
42294073 GCTTTTTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:42297694 original size:32 final size:32
Alignment explanation
Indices: 42297653--42297720 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
42297643 GTGAGCTAAG
42297653 ATATATGAATTATGATTATAAATTTTGTTGCA
1 ATATATGAATTATGATTATAAATTTTGTTGCA
42297685 ATATATGAATTATGATTATAAATTTTGTTGCA
1 ATATATGAATTATGATTATAAATTTTGTTGCA
42297717 ATAT
1 ATAT
42297721 CATGTTAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (32 bp):
ATATATGAATTATGATTATAAATTTTGTTGCA
Found at i:42298463 original size:31 final size:31
Alignment explanation
Indices: 42298428--42298489 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
42298418 AAGCTTGTTG
42298428 GCATAGTGTTTATTATTTTCATATGGACTTA
1 GCATAGTGTTTATTATTTTCATATGGACTTA
42298459 GCATAGTGTTTATTATTTTCATATGGACTTA
1 GCATAGTGTTTATTATTTTCATATGGACTTA
42298490 CTAAGCTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.10, G:0.16, T:0.48
Consensus pattern (31 bp):
GCATAGTGTTTATTATTTTCATATGGACTTA
Found at i:42301806 original size:40 final size:40
Alignment explanation
Indices: 42301740--42301905 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
42301730 AAATTGAATG
* * *
42301740 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
42301779 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
42301819 AT-TCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
42301858 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
42301898 ATATCCGG
1 ATATCCGG
42301906 TTATATTCCG
Statistics
Matches: 103, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
38 3 0.03
39 41 0.40
40 57 0.55
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:42301825 original size:39 final size:40
Alignment explanation
Indices: 42301780--42301889 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
42301770 CTGGAAATTA
* *
42301780 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-T-GGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
**
42301818 TATTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTC
1 TA-TCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTAGGC
*
42301859 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
42301890 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
38 5 0.08
39 26 0.42
40 26 0.42
41 5 0.08
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
Found at i:42310533 original size:22 final size:23
Alignment explanation
Indices: 42310508--42310551 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
42310498 GAAAATTTTG
42310508 AATTTTAATTAATTTT-ATAATA
1 AATTTTAATTAATTTTGATAATA
*
42310530 AATTTTGATTAATTTTGATAAT
1 AATTTTAATTAATTTTGATAAT
42310552 TTTTGATAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (23 bp):
AATTTTAATTAATTTTGATAATA
Found at i:42310564 original size:20 final size:20
Alignment explanation
Indices: 42310508--42310558 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
42310498 GAAAATTTTG
* *
42310508 AATTTTAATTAATTTTATAATA
1 AATTTTGATTAA-TTT-TGATA
42310530 AATTTTGATTAATTTTGATA
1 AATTTTGATTAATTTTGATA
*
42310550 ATTTTTGAT
1 AATTTTGAT
42310559 AGATTTGCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 12 0.46
21 3 0.12
22 11 0.42
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (20 bp):
AATTTTGATTAATTTTGATA
Found at i:42311094 original size:51 final size:51
Alignment explanation
Indices: 42311035--42311138 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
42311025 TATTGGCTGC
42311035 TCACTTCAGACATACCTCAACTTTCTCATCTCTTCTCTTCTCTTTCAATTT
1 TCACTTCAGACATACCTCAACTTTCTCATCTCTTCTCTTCTCTTTCAATTT
42311086 TCACTTCAGACATACCTCAACTTTCTCATCTCTTCTCTTCTCTTTCAATTT
1 TCACTTCAGACATACCTCAACTTTCTCATCTCTTCTCTTCTCTTTCAATTT
42311137 TC
1 TC
42311139 TCTCTTCATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.19, C:0.34, G:0.02, T:0.45
Consensus pattern (51 bp):
TCACTTCAGACATACCTCAACTTTCTCATCTCTTCTCTTCTCTTTCAATTT
Found at i:42314304 original size:46 final size:44
Alignment explanation
Indices: 42314251--42314470 Score: 185
Period size: 46 Copynumber: 4.7 Consensus size: 44
42314241 ACTTGTGAGT
42314251 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATTATGGAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-GA-TATGGAA
* *
42314297 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCC-ACTAAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCGA-TATG--GA-A
* * *
42314345 GCTAGTGCAAGACATGTCTGGGACATGCATCGGCCTTGAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC--GATATGGAA
* * * *
42314391 GCCAGTATAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC--CGATATG-GAA
* *
42314438 TC-AGTGTAAGACCATGTTTGGGACATGGCATCG
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
42314471 AAACCTTACC
Statistics
Matches: 146, Mismatches: 14, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
45 4 0.03
46 62 0.42
47 54 0.37
48 23 0.16
49 2 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCGATATGGAA
Found at i:42314469 original size:94 final size:94
Alignment explanation
Indices: 42314253--42314470 Score: 248
Period size: 94 Copynumber: 2.3 Consensus size: 94
42314243 TTGTGAGTGC
* * *
42314253 TAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATTATGGAAGCTAGTGTAAGACCATGTCTG
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATGATGGAAGCCAGTATAAGACCATGTCTG
**
42314318 GGACATGGCATCGCCACTAAGACGAGTGC
66 GGACATGGCATCGCCACTAAGACGAGTAA
* * *
42314347 TAGTGCAAGACATGTCTGGGACATGCATCGGCCTTGA-GATGTAAGCCAGTATAAGA-CATGTCT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCC-AGATGATGGAAGCCAGTATAAGACCATGTCT
* * *
42314410 GGGACAT-GCATCGGCTAC-GAGATGA-TAA
65 GGGACATGGCATC-GCCACTAAGACGAGTAA
*
42314438 TCAGTGTAAGACCATGTTTGGGACATGGCATCG
1 T-AGTGTAAGA-CATGTCTGGGACAT-GCATCG
42314471 AAACCTTACC
Statistics
Matches: 106, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
91 2 0.02
92 18 0.17
93 31 0.29
94 53 0.50
95 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATGATGGAAGCCAGTATAAGACCATGTCTG
GGACATGGCATCGCCACTAAGACGAGTAA
Found at i:42326956 original size:54 final size:53
Alignment explanation
Indices: 42326874--42326984 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 53
42326864 CGTACATTGG
42326874 CCTATTTTCTCTGTTTTTGGCCCGTTTCTCGTTCCTTTCGCTCTCCCATGCTCA
1 CCTATTTTCTCTGTTTTTGGCCCGTTTCTCGTT-CTTTCGCTCTCCCATGCTCA
* ** * *
42326928 CCTATTTTCTTTGTTTTTGGCGTGTTTCTCGTTCTTTCGCTCTCCTATGCTTA
1 CCTATTTTCTCTGTTTTTGGCCCGTTTCTCGTTCTTTCGCTCTCCCATGCTCA
42326981 CCTA
1 CCTA
42326985 AGTATAAAAC
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
53 22 0.42
54 30 0.58
ACGTcount: A:0.06, C:0.31, G:0.14, T:0.50
Consensus pattern (53 bp):
CCTATTTTCTCTGTTTTTGGCCCGTTTCTCGTTCTTTCGCTCTCCCATGCTCA
Found at i:42331615 original size:47 final size:46
Alignment explanation
Indices: 42331543--42331808 Score: 181
Period size: 47 Copynumber: 5.7 Consensus size: 46
42331533 ACTTGTGTGT
42331543 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCACATTATGGAA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACCACA-TATGGAA
* * * *
42331589 GCTAGTGTAAGACCATGTTTGGGACATGGCATC-AGCAC-TAAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGACCACATATG--GA-A
* * *
42331637 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACCAC-ATATGGAA
* * * * * * * *
42331683 GCCAATGTAAGACATGTTTCGAACAT-GCATCGGCTACGAGAT-GATA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACCAC-ATATGGA-A
* * *
42331729 G-TCAGTATAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT-G-A
1 GCT-AGTGTAAGA-CATGTCTGGGACATGGCATCGAC--CACATATGGAA
*
42331776 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATC
42331809 AGGACCTTAC
Statistics
Matches: 173, Mismatches: 32, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
45 4 0.02
46 60 0.35
47 78 0.45
48 24 0.14
49 6 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGACCACATATGGAA
Found at i:42336114 original size:72 final size:72
Alignment explanation
Indices: 42335997--42336142 Score: 292
Period size: 72 Copynumber: 2.0 Consensus size: 72
42335987 TATATTTTTA
42335997 TTTTCTCTATTGTTTTTAACAATGGGGACATTGTTCATCTTAAGTAGGTGGGATCAAAAAATTGA
1 TTTTCTCTATTGTTTTTAACAATGGGGACATTGTTCATCTTAAGTAGGTGGGATCAAAAAATTGA
42336062 AATTATT
66 AATTATT
42336069 TTTTCTCTATTGTTTTTAACAATGGGGACATTGTTCATCTTAAGTAGGTGGGATCAAAAAATTGA
1 TTTTCTCTATTGTTTTTAACAATGGGGACATTGTTCATCTTAAGTAGGTGGGATCAAAAAATTGA
42336134 AATTATT
66 AATTATT
42336141 TT
1 TT
42336143 CTCTTAGAAT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (72 bp):
TTTTCTCTATTGTTTTTAACAATGGGGACATTGTTCATCTTAAGTAGGTGGGATCAAAAAATTGA
AATTATT
Found at i:42342997 original size:94 final size:94
Alignment explanation
Indices: 42342836--42343020 Score: 361
Period size: 94 Copynumber: 2.0 Consensus size: 94
42342826 TGAACACATT
42342836 ATGATTTGTCTTATTATTTTATAATATACTTTATATAATAACATTTTATTACATAAGGTACTATT
1 ATGATTTGTCTTATTATTTTATAATATACTTTATATAATAACATTTTATTACATAAGGTACTATT
42342901 TCACCCTTACTTATTATTATGTATAAGTA
66 TCACCCTTACTTATTATTATGTATAAGTA
*
42342930 ATGATTTGTCTTATTATTTTATAATATACTTTATATTATAACATTTTATTACATAAGGTACTATT
1 ATGATTTGTCTTATTATTTTATAATATACTTTATATAATAACATTTTATTACATAAGGTACTATT
42342995 TCACCCTTACTTATTATTATGTATAA
66 TCACCCTTACTTATTATTATGTATAA
42343021 ATTACTTACT
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 90 1.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.50
Consensus pattern (94 bp):
ATGATTTGTCTTATTATTTTATAATATACTTTATATAATAACATTTTATTACATAAGGTACTATT
TCACCCTTACTTATTATTATGTATAAGTA
Found at i:42343715 original size:27 final size:26
Alignment explanation
Indices: 42343676--42343841 Score: 149
Period size: 27 Copynumber: 6.2 Consensus size: 26
42343666 AGTCGTTAAA
42343676 ACCCCTGATTTGTGAAATTA-TCGAAAT
1 ACCCCTGATTTGT-AAATTACT-GAAAT
* **
42343703 ACCCCAGGGTTGTAAACTTACTGAAAT
1 ACCCCTGATTTGTAAA-TTACTGAAAT
*
42343730 ACCCCTGATTTGTGAAATTACCGAAAT
1 ACCCCTGATTTGT-AAATTACTGAAAT
** *
42343757 A-CCCTCGGGTTGTAAACTTACTAAAAT
1 ACCCCT-GATTTGTAAA-TTACTGAAAT
42343784 ACCCCTGATTTGTAAAATTACTGAAAT
1 ACCCCTGATTTGT-AAATTACTGAAAT
* *
42343811 ACCCCCGATTTGCAAAATTA-TCGAAAT
1 ACCCCTGATTTG-TAAATTACT-GAAAT
42343838 ACCC
1 ACCC
42343842 TTGTAGGGTA
Statistics
Matches: 114, Mismatches: 16, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
26 11 0.10
27 92 0.81
28 11 0.10
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (26 bp):
ACCCCTGATTTGTAAATTACTGAAAT
Found at i:42343758 original size:54 final size:53
Alignment explanation
Indices: 42343676--42343815 Score: 226
Period size: 54 Copynumber: 2.6 Consensus size: 53
42343666 AGTCGTTAAA
* *
42343676 ACCCCTGATTTGTGAAATTATCGAAATACCCCAGGGTTGTAAACTTACTGAAAT
1 ACCCCTGATTTGTGAAATTACCGAAATACCCC-GGGTTGTAAACTTACTAAAAT
42343730 ACCCCTGATTTGTGAAATTACCGAAATACCCTCGGGTTGTAAACTTACTAAAAT
1 ACCCCTGATTTGTGAAATTACCGAAATACCC-CGGGTTGTAAACTTACTAAAAT
* *
42343784 ACCCCTGATTTGTAAAATTACTGAAATACCCC
1 ACCCCTGATTTGTGAAATTACCGAAATACCCC
42343816 CGATTTGCAA
Statistics
Matches: 81, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
53 1 0.01
54 79 0.98
55 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (53 bp):
ACCCCTGATTTGTGAAATTACCGAAATACCCCGGGTTGTAAACTTACTAAAAT
Found at i:42343865 original size:27 final size:27
Alignment explanation
Indices: 42343835--42343912 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
42343825 AAATTATCGA
* ** *
42343835 AATACCCTTGTAGGGTAGGATTACTGT
1 AATACCCCTGTAGGGTAAAATGACTGT
*
42343862 AATACCCCTATAGGGTAAAATGACTGT
1 AATACCCCTGTAGGGTAAAATGACTGT
*
42343889 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
42343913 GATTATGCCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACTGT
Found at i:42344311 original size:28 final size:28
Alignment explanation
Indices: 42344270--42344363 Score: 82
Period size: 28 Copynumber: 3.2 Consensus size: 28
42344260 ACTGTTCTGA
* *
42344270 TACTATATTGGGCTTAGGCCCACACTGT
1 TACTGTATAGGGCTTAGGCCCACACTGT
* *
42344298 TACTGTATAGGGCTAAGGCCCAGATTGCACTGA
1 TACTGTATAGGGCTTAGGCCC--A---CACTGT
*
42344331 TACTGTATAGGG-TTAAGGCCCAGACTGT
1 TACTGTATAGGGCTT-AGGCCCACACTGT
42344359 TACTG
1 TACTG
42344364 AATGCTGTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
28 27 0.51
30 1 0.02
31 1 0.02
32 1 0.02
33 23 0.43
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (28 bp):
TACTGTATAGGGCTTAGGCCCACACTGT
Found at i:42344329 original size:33 final size:33
Alignment explanation
Indices: 42344292--42344354 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
42344282 CTTAGGCCCA
*
42344292 CACTGTTACTGTATAGGGCTAAGGCCCAGATTG
1 CACTGATACTGTATAGGGCTAAGGCCCAGATTG
*
42344325 CACTGATACTGTATAGGGTTAAGGCCCAGA
1 CACTGATACTGTATAGGGCTAAGGCCCAGA
42344355 CTGTTACTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (33 bp):
CACTGATACTGTATAGGGCTAAGGCCCAGATTG
Found at i:42346820 original size:14 final size:13
Alignment explanation
Indices: 42346778--42346821 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
42346768 GAAGGTTATA
* *
42346778 GAGTAGACAATCT
1 GAGTCGACAATCC
42346791 GAGTCGACAATCC
1 GAGTCGACAATCC
42346804 GAGTCGACAATTCC
1 GAGTCGACAA-TCC
42346818 GAGT
1 GAGT
42346822 ATGAGGTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
13 21 0.75
14 7 0.25
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (13 bp):
GAGTCGACAATCC
Found at i:42352859 original size:40 final size:40
Alignment explanation
Indices: 42352757--42352912 Score: 140
Period size: 40 Copynumber: 4.0 Consensus size: 40
42352747 GCCCGGTTAC
* **
42352757 AGTAACTCGCACGAATGCCTTCGGA-CTCAACCCGGA-TT
1 AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTT
* * * *
42352795 AGTAGCTTGCTCGAAAGCCTTCGGATCTTAGTCCGGATTT
1 AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTT
* * *
42352835 AGTAACTCGCACGTATGCCGTCGGATCTTAGTCTGGATTT
1 AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTT
* * * *
42352875 AGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGCCCGGAT
1 AGTAAC-TCGCACGAATGCCTTC-GGATCTTAGTCCGGAT
42352913 ATCATTCGAA
Statistics
Matches: 93, Mismatches: 21, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
38 21 0.23
39 8 0.09
40 56 0.60
41 8 0.09
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTT
Found at i:42352911 original size:80 final size:78
Alignment explanation
Indices: 42352728--42352912 Score: 189
Period size: 78 Copynumber: 2.3 Consensus size: 78
42352718 GCTACACATT
* *
42352728 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGACTCAACCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGGATTACAGTAACTCGCACGAATGCCGTCGGACTCAACCCGG
*
42352792 ATTAGTAGCTTGCT
65 ATTAGTAGCTTGCA
* * * * ** *
42352806 CGAAAGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACGTATGCCGTCGGATCTTAGTCT
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTACAGTAACTCGCACGAATGCCGTCGGA-CTCAACCC
42352869 GGATTTAGTCA-CTTAGCA
63 GGA-TTAGT-AGCTT-GCA
42352887 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
42352913 ATCATTCGAA
Statistics
Matches: 88, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
77 3 0.03
78 38 0.43
79 12 0.14
80 28 0.32
81 7 0.08
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (78 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTACAGTAACTCGCACGAATGCCGTCGGACTCAACCCGGA
TTAGTAGCTTGCA
Found at i:42356734 original size:40 final size:40
Alignment explanation
Indices: 42356679--42356888 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
42356669 AACATTGGAA
42356679 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
42356719 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
42356759 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
42356799 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
42356838 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
42356879 CTATATCCGG
1 ATATATCCGG
42356889 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:42364863 original size:40 final size:40
Alignment explanation
Indices: 42364800--42364981 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 40
42364790 AAAATATATA
42364800 ATTCGTGCGA-TTGA-ATATCCGGGCTAAGACCCGAAGGC
1 ATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC
42364838 ATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC
1 ATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC
42364878 ATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC
1 ATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC
* * * * * * * *
42364918 CTTTGTGCAAG-TCACCAAATCCGGGTTATGACCCGAAGGC
1 ATTCGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
* * *
42364958 AATCGTGCGAGTCGCTATATCCGG
1 ATTCGTGCGAGTTGATATATCCGG
42364982 TTAAATCCCG
Statistics
Matches: 123, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
38 10 0.08
39 6 0.05
40 107 0.87
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
ATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC
Found at i:42366685 original size:31 final size:34
Alignment explanation
Indices: 42366641--42366714 Score: 100
Period size: 31 Copynumber: 2.3 Consensus size: 34
42366631 TATCATTAAA
42366641 CATTTAAAACAACCAACCATTC-A-ACATGGCAT
1 CATTTAAAACAACCAACCATTCAATACATGGCAT
* *
42366673 CATTT-AAACAACCAAGCATTCAATATATGGCAT
1 CATTTAAAACAACCAACCATTCAATACATGGCAT
*
42366706 CATTCAAAA
1 CATTTAAAA
42366715 TCTATAGCAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
31 15 0.42
32 6 0.17
33 12 0.33
34 3 0.08
ACGTcount: A:0.45, C:0.24, G:0.07, T:0.24
Consensus pattern (34 bp):
CATTTAAAACAACCAACCATTCAATACATGGCAT
Found at i:42368290 original size:16 final size:16
Alignment explanation
Indices: 42368269--42368299 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
42368259 AGATTTAGCT
42368269 TTTAACTTGTAATTCG
1 TTTAACTTGTAATTCG
42368285 TTTAACTTGTAATTC
1 TTTAACTTGTAATTC
42368300 ACGGTCACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.13, G:0.10, T:0.52
Consensus pattern (16 bp):
TTTAACTTGTAATTCG
Found at i:42371123 original size:25 final size:25
Alignment explanation
Indices: 42371094--42371141 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
42371084 TTATAATATG
* * *
42371094 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
42371119 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
42371142 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:42371210 original size:20 final size:20
Alignment explanation
Indices: 42371185--42371243 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
42371175 TAAATATGGT
42371185 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
42371205 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
42371225 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
42371244 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:42371361 original size:25 final size:24
Alignment explanation
Indices: 42371294--42371365 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
42371284 GAGGAAGTGA
*
42371294 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
* *
42371318 GAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
42371342 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTAGGCC-CCAGTTAT
42371366 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 30 0.73
25 11 0.27
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTAGGCCCCAGTTATT
Found at i:42371592 original size:31 final size:31
Alignment explanation
Indices: 42371557--42371657 Score: 139
Period size: 31 Copynumber: 3.1 Consensus size: 31
42371547 CGTTTACAGT
*
42371557 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGA
42371588 AAAGGCTTCGGCCCAGTATTATGAAATATGAATATGA
1 AAAGGCTTCGGCCCAGTATTATG----A--AATATGA
42371625 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGA
42371656 AA
1 AA
42371658 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 12
0.83 0.01 0.16
Matches are distributed among these distances:
31 31 0.49
33 1 0.02
35 1 0.02
37 30 0.48
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGA
Found at i:42371625 original size:37 final size:38
Alignment explanation
Indices: 42371574--42371680 Score: 189
Period size: 37 Copynumber: 2.8 Consensus size: 38
42371564 TCGGCCCAGT
42371574 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
42371612 AATATG-AATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
42371649 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
42371681 GCATGATTGA
Statistics
Matches: 66, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
37 37 0.56
38 16 0.24
39 13 0.20
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.24
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:42379403 original size:25 final size:25
Alignment explanation
Indices: 42379374--42379421 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
42379364 TTATACCATG
* * *
42379374 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
42379399 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
42379422 GTTTATATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:42379490 original size:20 final size:20
Alignment explanation
Indices: 42379465--42379522 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
42379455 TAAATACGGT
42379465 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
42379485 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
42379505 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
42379523 GGGTAATCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:42379604 original size:23 final size:24
Alignment explanation
Indices: 42379574--42379668 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
42379564 GAGGAAGTGA
42379574 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
42379597 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
42379621 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
42379645 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
42379669 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:42379642 original size:47 final size:49
Alignment explanation
Indices: 42379575--42379668 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
42379565 AGGAAGTGAA
*
42379575 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
42379622 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
42379669 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:42379894 original size:31 final size:31
Alignment explanation
Indices: 42379859--42379960 Score: 132
Period size: 31 Copynumber: 3.1 Consensus size: 31
42379849 CATTTACAGT
42379859 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
42379890 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
*
42379928 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
42379959 AA
1 AA
42379961 TATGGAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 14
0.81 0.01 0.18
Matches are distributed among these distances:
31 31 0.49
33 1 0.02
36 1 0.02
38 30 0.48
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:42379927 original size:38 final size:38
Alignment explanation
Indices: 42379876--42379983 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
42379866 TCGGCCCAGT
42379876 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
42379914 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
* *
42379952 AATATGAAATATGGAAAGGGCTACGGCCCAGT
1 AATATGAAATAT-GAAAAGGCTTCGGCCCAGT
42379984 GCATGATTGA
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
38 50 0.75
39 17 0.25
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:42385649 original size:29 final size:29
Alignment explanation
Indices: 42385577--42385673 Score: 108
Period size: 29 Copynumber: 3.4 Consensus size: 29
42385567 GAAAGCATGA
42385577 CATATGAATGTGATTTGGGCCTAA-TGTGC
1 CATATGAATGTGATTTGGGCCTAATTG-GC
* *
42385606 TATACGAATGTGATTTGGGCCTAATTGGC
1 CATATGAATGTGATTTGGGCCTAATTGGC
* * * *
42385635 CATATGGATGAGA-TTGGGCCTAGTGGGC
1 CATATGAATGTGATTTGGGCCTAATTGGC
*
42385663 CATATGCATGT
1 CATATGAATGT
42385674 ATGTAAACTT
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
28 22 0.39
29 33 0.58
30 2 0.04
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (29 bp):
CATATGAATGTGATTTGGGCCTAATTGGC
Found at i:42387731 original size:40 final size:40
Alignment explanation
Indices: 42387676--42387879 Score: 214
Period size: 40 Copynumber: 5.1 Consensus size: 40
42387666 TGAATGATAC
* * * *
42387676 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
*
42387716 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGATTATAT
* ** *
42387756 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* * ** *
42387796 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* ** *
42387836 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
42387876 CCGG
1 CCGG
42387880 TTGAATCCCG
Statistics
Matches: 143, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.02
40 135 0.94
41 5 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
Found at i:42387878 original size:80 final size:80
Alignment explanation
Indices: 42387676--42387879 Score: 239
Period size: 80 Copynumber: 2.5 Consensus size: 80
42387666 TGAATGATAC
* * *
42387676 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** *
42387741 TGCGAGTTGTTATAT
66 TGCAAGTTACCAAAT
* * ** * *
42387756 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
42387820 GTGCAAGTTACCAAAT
65 GTGCAAGTTACCAAAT
* * *
42387836 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGG
42387880 TTGAATCCCG
Statistics
Matches: 101, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
80 98 0.97
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:42396696 original size:28 final size:29
Alignment explanation
Indices: 42396634--42396713 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
42396624 TATAAATGTG
* *
42396634 ATTTGGGCCTAATGGGCTATACGAATATA
1 ATTTGGGCCTAATGGGCCATATGAATATA
42396663 ATTT-GGCCTTAATGGGCCATATGAATGA-A
1 ATTTGGGCC-TAATGGGCCATATGAAT-ATA
*
42396692 A-TTGGGCCTAGTGGGCCATATG
1 ATTTGGGCCTAATGGGCCATATG
42396714 CATGTAAGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
28 19 0.42
29 25 0.56
30 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (29 bp):
ATTTGGGCCTAATGGGCCATATGAATATA
Found at i:42397843 original size:17 final size:17
Alignment explanation
Indices: 42397823--42397855 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
42397813 TTTAAAGAAG
42397823 GGTTTTCGATAAAACAA
1 GGTTTTCGATAAAACAA
*
42397840 GGTTTTCGCTAAAACA
1 GGTTTTCGATAAAACA
42397856 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (17 bp):
GGTTTTCGATAAAACAA
Found at i:42398508 original size:23 final size:23
Alignment explanation
Indices: 42398478--42398628 Score: 141
Period size: 22 Copynumber: 6.5 Consensus size: 23
42398468 GGGCTGATGG
*
42398478 ACAGTAAGCTCTATTGAGCTGAA
1 ACAGTAAGCTCTATCGAGCTGAA
*
42398501 ACAGTAAGCTTTATCGAGCT-AA
1 ACAGTAAGCTCTATCGAGCTGAA
* *
42398523 ACAATAAGCTCTATCAAGCT-AA
1 ACAGTAAGCTCTATCGAGCTGAA
*
42398545 ACAGTAAGCTC-ATACGAGTTGAA
1 ACAGTAAGCTCTAT-CGAGCTGAA
* *
42398568 ACGGTAAGCTCCAAT-GAGCTGAAA
1 ACAGTAAGCT-CTATCGAGCTG-AA
42398592 ACAGTAAGCTCT-TACGAGCTGATA
1 ACAGTAAGCTCTAT-CGAGCTGA-A
42398616 TATCAGTAAGCTC
1 -A-CAGTAAGCTC
42398629 ATACGTGCTG
Statistics
Matches: 106, Mismatches: 12, Indels: 17
0.79 0.09 0.13
Matches are distributed among these distances:
21 2 0.02
22 36 0.34
23 36 0.34
24 19 0.18
25 3 0.03
26 10 0.09
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (23 bp):
ACAGTAAGCTCTATCGAGCTGAA
Found at i:42398535 original size:45 final size:46
Alignment explanation
Indices: 42398482--42398613 Score: 137
Period size: 45 Copynumber: 2.9 Consensus size: 46
42398472 TGATGGACAG
42398482 TAAGCTCTATTGAGCTGAAACAGTAAGCTTTATCGAGCT-AAACAA
1 TAAGCTCTATTGAGCTGAAACAGTAAGCTTTATCGAGCTGAAACAA
** * * **
42398527 TAAGCTCTATCAAGCT-AAACAGTAAGC-TCATACGAGTTGAAACGG
1 TAAGCTCTATTGAGCTGAAACAGTAAGCTTTAT-CGAGCTGAAACAA
* *
42398572 TAAGCTCCAATGAGCTGAAAACAGTAAGCTCTTA-CGAGCTGA
1 TAAGCTCTATTGAGCTG-AAACAGTAAGCT-TTATCGAGCTGA
42398614 TATATCAGTA
Statistics
Matches: 69, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
43 3 0.04
44 16 0.23
45 30 0.43
47 18 0.26
49 2 0.03
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGCTCTATTGAGCTGAAACAGTAAGCTTTATCGAGCTGAAACAA
Found at i:42399109 original size:16 final size:16
Alignment explanation
Indices: 42399088--42399124 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
42399078 TATACAATTA
*
42399088 GGCCATAACCTATGAT
1 GGCCATAACCCATGAT
42399104 GGCCATAACCCATGAT
1 GGCCATAACCCATGAT
42399120 GGCCA
1 GGCCA
42399125 AATTTCCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (16 bp):
GGCCATAACCCATGAT
Found at i:42406424 original size:15 final size:16
Alignment explanation
Indices: 42406404--42406442 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
42406394 CATTTGTATG
42406404 TCATCATACATGTGT-
1 TCATCATACATGTGTA
42406419 TCATCATACATGTGTA
1 TCATCATACATGTGTA
42406435 TC-TCATAC
1 TCATCATAC
42406443 TCATTTTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 21 0.91
16 2 0.09
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.38
Consensus pattern (16 bp):
TCATCATACATGTGTA
Found at i:42406440 original size:18 final size:17
Alignment explanation
Indices: 42406398--42406440 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 17
42406388 ACATAGCATT
42406398 TGTATGTCATCATACATG
1 TGTAT-TCATCATACATG
42406416 TG--TTCATCATACATG
1 TGTATTCATCATACATG
42406431 TGTATCTCAT
1 TGTAT-TCAT
42406441 ACTCATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 14 0.64
16 1 0.05
17 1 0.05
18 6 0.27
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.42
Consensus pattern (17 bp):
TGTATTCATCATACATG
Found at i:42406661 original size:2 final size:2
Alignment explanation
Indices: 42406654--42406684 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
42406644 AAGACTAGTC
42406654 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
42406685 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:42408707 original size:30 final size:30
Alignment explanation
Indices: 42408673--42408733 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
42408663 TCCTTAACTC
42408673 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
42408703 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
42408733 A
1 A
42408734 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:42417639 original size:40 final size:40
Alignment explanation
Indices: 42417556--42417779 Score: 274
Period size: 40 Copynumber: 5.5 Consensus size: 40
42417546 ACCCAAGTAT
* * * *
42417556 CTTCGGGATTTAG-CCGGCTATAG-CAACTCGCACAAATGA
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
42417595 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
42417635 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
42417675 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGGACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
42417718 CTTTGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
42417758 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
42417780 CATCCGAATA
Statistics
Matches: 160, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 12 0.08
40 113 0.71
41 1 0.01
43 34 0.21
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:42417752 original size:83 final size:80
Alignment explanation
Indices: 42417556--42417779 Score: 281
Period size: 83 Copynumber: 2.8 Consensus size: 80
42417546 ACCCAAGTAT
* * * * * *
42417556 CTTCGGGATTTAG-CCGGCTATAGCAACTCGCACAAATGACTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
42417620 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
42417635 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
42417699 CAACTACTCGGACAAATGC
66 C-ACTA---GCACAAATGC
* *
42417718 CTTTGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
42417780 CATCCGAATA
Statistics
Matches: 125, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 13 0.10
80 47 0.38
83 65 0.52
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:42420216 original size:2 final size:2
Alignment explanation
Indices: 42420211--42420262 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
42420201 TTACACACAC
* *
42420211 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
42420253 AT AT AT AT AT
1 AT AT AT AT AT
42420263 TCTTCTTTGA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:42420560 original size:39 final size:39
Alignment explanation
Indices: 42420517--42420649 Score: 149
Period size: 39 Copynumber: 3.4 Consensus size: 39
42420507 TAGGACATAT
* * * *
42420517 TTCCAGCGCGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCCGCGGACCTTAAGTCCGGGTATAA
42420556 TTCCAGCACATAGCCCGCGGACCTTAAGTCCGGGTATAA
1 TTCCAGCACATAGCCCGCGGACCTTAAGTCCGGGTATAA
* * * * * **
42420595 TTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAATATAA
1 TTCCAGCACATAGCCCGC-GGACCTTAAGTCCGGGTATAA
*
42420635 TTCCAGCATATAGCC
1 TTCCAGCACATAGCC
42420650 TGTGGGTCTT
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 51 0.62
40 31 0.38
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (39 bp):
TTCCAGCACATAGCCCGCGGACCTTAAGTCCGGGTATAA
Found at i:42420634 original size:40 final size:40
Alignment explanation
Indices: 42420551--42420666 Score: 153
Period size: 40 Copynumber: 2.9 Consensus size: 40
42420541 TAAGTCCGGT
* * * * * **
42420551 TATAATTCCAGCACATAGCCCGC-GGACCTTAAGTCCGGG
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAA
42420590 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAA
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAA
*
42420630 TATAATTCCAGCATATAGCCTGTGGGTCTTTAAGCCC
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCC
42420667 AGATACACAT
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
39 21 0.31
40 47 0.69
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAA
Found at i:42425696 original size:40 final size:40
Alignment explanation
Indices: 42425504--42425689 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
42425494 TCGAATGATG
* * *
42425504 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
42425544 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
42425584 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
42425624 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
42425665 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
42425690 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:42425696 original size:80 final size:80
Alignment explanation
Indices: 42425504--42425722 Score: 229
Period size: 80 Copynumber: 2.8 Consensus size: 80
42425494 TCGAATGATG
* * **
42425504 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
42425568 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* * *
42425584 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
42425646 TCTGTGCGAGTTACTATAA
64 TC-GTGCGAGTTACTA-AA
* **
42425665 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
42425723 TACGTGATTC
Statistics
Matches: 117, Mismatches: 13, Indels: 19
0.79 0.09 0.13
Matches are distributed among these distances:
79 19 0.16
80 88 0.75
81 10 0.09
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:42431060 original size:39 final size:39
Alignment explanation
Indices: 42431017--42431155 Score: 170
Period size: 39 Copynumber: 3.5 Consensus size: 39
42431007 TAGGACATAT
* * * *
42431017 TTCCAGCGCGTAGCCTGCGGACCTTAAGTTCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
42431056 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
* * * * **
42431095 TTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAATATAA
1 TTCCAGCACATAGCCTGC-GGACCTTAAGTCCGGGTATAA
*
42431135 TTCCAGCATATAGCCTGCGGA
1 TTCCAGCACATAGCCTGCGGA
42431156 TATTTAAGCC
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 54 0.61
40 34 0.39
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
Found at i:42431134 original size:40 final size:40
Alignment explanation
Indices: 42431051--42431167 Score: 155
Period size: 40 Copynumber: 3.0 Consensus size: 40
42431041 TAAGTTCGGT
* * * * **
42431051 TATAATTCCAGCACATAGCCTGC-GGACCTTAAGTCCGGG
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAA
42431090 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAA
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAA
* *
42431130 TATAATTCCAGCATATAGCCTGCGGATATTTAAGCCCG
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCG
42431168 GATACACATC
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
39 22 0.32
40 47 0.68
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAA
Found at i:42435241 original size:20 final size:20
Alignment explanation
Indices: 42435213--42435250 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
42435203 CTAGGAACTA
42435213 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
42435233 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
42435251 TATATGTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:42436604 original size:30 final size:30
Alignment explanation
Indices: 42436564--42436633 Score: 115
Period size: 30 Copynumber: 2.4 Consensus size: 30
42436554 AAACACACGG
* *
42436564 GTAGA-GACACGGCCGTGTGTCCCAGCTGT
1 GTAGAGGACACGGCCGTGTATCCCAGCCGT
42436593 GTAGAGGACACGGCCGTGTATCCCAGCCGT
1 GTAGAGGACACGGCCGTGTATCCCAGCCGT
42436623 GTAGAGGACAC
1 GTAGAGGACAC
42436634 AGCCTTTGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 5 0.13
30 33 0.87
ACGTcount: A:0.21, C:0.27, G:0.34, T:0.17
Consensus pattern (30 bp):
GTAGAGGACACGGCCGTGTATCCCAGCCGT
Found at i:42438784 original size:40 final size:40
Alignment explanation
Indices: 42438715--42439000 Score: 475
Period size: 40 Copynumber: 7.2 Consensus size: 40
42438705 AACCCAAGTA
* **
42438715 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
42438754 CCTTCGAGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
42438794 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
42438834 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
42438874 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
42438914 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
42438954 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
42438994 CCTTCGG
1 CCTTCGG
42439001 ATCTTAGTCC
Statistics
Matches: 234, Mismatches: 12, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 12 0.05
40 222 0.95
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:42440272 original size:13 final size:13
Alignment explanation
Indices: 42440254--42440293 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
42440244 TTATTATTTC
42440254 TAACACAAAATGT
1 TAACACAAAATGT
42440267 TAACACAAAATGT
1 TAACACAAAATGT
42440280 TAACACAAAATGT
1 TAACACAAAATGT
42440293 T
1 T
42440294 TATAATATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.25
Consensus pattern (13 bp):
TAACACAAAATGT
Found at i:42442036 original size:7 final size:7
Alignment explanation
Indices: 42442026--42442056 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
42442016 AAGAGAGAAT
42442026 GATGAGG
1 GATGAGG
42442033 GATGAGG
1 GATGAGG
*
42442040 GATGATG
1 GATGAGG
42442047 GATGAGG
1 GATGAGG
42442054 GAT
1 GAT
42442057 CAAATGAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.52, T:0.19
Consensus pattern (7 bp):
GATGAGG
Found at i:42452280 original size:29 final size:27
Alignment explanation
Indices: 42452246--42452348 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
42452236 TACTCAATCA
*
42452246 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
42452275 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
42452304 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
42452333 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
42452349 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:42457751 original size:24 final size:27
Alignment explanation
Indices: 42457704--42457755 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 27
42457694 AATCGAAGTA
42457704 AGTTCGTATGTTAAATAAGCTTTAATAT
1 AGTTCGTATGTTAAAT-AGCTTTAATAT
42457732 AGTT-GTAT-TTAAAT-GCTTTAATAT
1 AGTTCGTATGTTAAATAGCTTTAATAT
42457756 TGCATGAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 10 0.42
26 6 0.25
27 4 0.17
28 4 0.17
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.46
Consensus pattern (27 bp):
AGTTCGTATGTTAAATAGCTTTAATAT
Done.