Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 15 of 378
Found at i:4167167 original size:13 final size:13
Alignment explanation
Indices: 4167139--4167201 Score: 69
Period size: 13 Copynumber: 4.8 Consensus size: 13
4167129 CTTCTATTTC
4167139 AAAAA-AAAAA-A
1 AAAAAGAAAAAGA
4167150 AAAAAGAAAAAGAGA
1 AAAAAG-AAAA-AGA
*
4167165 AAAAATAAAAAGA
1 AAAAAGAAAAAGA
4167178 AAAAAGAGAAAA-A
1 AAAAAGA-AAAAGA
4167191 AAAAAGAAAAA
1 AAAAAGAAAAA
4167202 ATGGAGAGGC
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
11 5 0.11
12 4 0.09
13 21 0.47
14 9 0.20
15 6 0.13
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (13 bp):
AAAAAGAAAAAGA
Found at i:4167174 original size:22 final size:20
Alignment explanation
Indices: 4167139--4167202 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
4167129 CTTCTATTTC
4167139 AAAA-AAAAAAAAAAAAGAA
1 AAAAGAAAAAAAAAAAAGAA
*
4167158 AAAGAGAAAAAATAAAAAGAA
1 AAA-AGAAAAAAAAAAAAGAA
*
4167179 AAAAGAGAAAAAAAAAAGAA
1 AAAAGAAAAAAAAAAAAGAA
4167199 AAAA
1 AAAA
4167203 TGGAGAGGCC
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
19 3 0.08
20 20 0.50
21 17 0.43
ACGTcount: A:0.88, C:0.00, G:0.11, T:0.02
Consensus pattern (20 bp):
AAAAGAAAAAAAAAAAAGAA
Found at i:4168255 original size:41 final size:41
Alignment explanation
Indices: 4168202--4168591 Score: 133
Period size: 41 Copynumber: 9.3 Consensus size: 41
4168192 GATCTTATCT
*
4168202 CCCTAAGCAGTAGTGGAGCAGATCGAAGACCCACCTTAATC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACACACCTTAATC
* * ** * *
4168243 CCCTAAGCAGTAG-GGTAACAGGTTAAATTTG-CAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCGAA---GACACACCTTAATC
* *
4168285 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACACACCTTAATC
* * * ** * *
4168327 CCCTAAGCAGTTG-GGTAACAGGTTAAATTTG-CAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCGAA---GACACACCTTAATC
* * * *
4168369 TCTCGAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACACACCTTAATC
* * * * * *
4168411 CCCTAAGC-GATAG-GGTAACAGGT-TAAAATTGCAGATCTT-ATC
1 CCCTAAGCAG-TAGTGG-AGCAGATCGAAGA---CACACCTTAATC
* *
4168453 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCTTAA-C
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACACACCTTAATC
* * * * * * *
4168494 CTCCTAAACAGTAG-GGTAACAG-GCTAAAATTGCAGATCTT-ATC
1 C-CCTAAGCAGTAGTGG-AGCAGATCGAAGA---CACACCTTAATC
* * *
4168537 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCCTTAACC
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACACACCTTAATC
*
4168579 CCCTAAACAGTAG
1 CCCTAAGCAGTAG
4168592 GGTAACAGGC
Statistics
Matches: 240, Mismatches: 73, Indels: 72
0.62 0.19 0.19
Matches are distributed among these distances:
40 19 0.08
41 97 0.40
42 19 0.08
43 86 0.36
44 19 0.08
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (41 bp):
CCCTAAGCAGTAGTGGAGCAGATCGAAGACACACCTTAATC
Found at i:4168259 original size:84 final size:84
Alignment explanation
Indices: 4168149--4168767 Score: 877
Period size: 84 Copynumber: 7.3 Consensus size: 84
4168139 CAAAATTCAG
*
4168149 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
4168214 GTGGAGCAGATCGAAGACC
66 GTGGAGCAGATCGAAGACC
* *
4168233 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
*
4168298 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACC
* * * *
4168317 CGCCTTAATCCCCTAAGCAGTTGGGTAACAGGTTAAATTTGCAGATCTTATCTCTCGAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
*
4168382 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACC
4168401 CGCCTTAATCCCCTAAGC-GATAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGT
1 CGCCTTAATCCCCTAAGCAG-TAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGT
4168465 AGTGGAGCAGATCGAAGACC
65 AGTGGAGCAGATCGAAGACC
* *
4168485 CGCCTTAA-CCTCCTAAACAGTAGGGTAACAGGCTAAAATTGCAGATCTTATCTCCCTAAGCAGT
1 CGCCTTAATCC-CCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGT
4168549 AGTGGAGCAGATCGAAGACC
65 AGTGGAGCAGATCGAAGACC
* * * *
4168569 CGCCTTAACCCCCTAAACAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
* ** * *
4168634 GAGGAATAGATCAAAGACGATG
66 GTGGAGCAGATCGAAGAC---C
* * * * *
4168656 CGCCTTAA-CCCCTTAAGCAGTAGGGTAACAGGCTAAAATTACAAATCTTATCTCCTTAAGCAAT
1 CGCCTTAATCCCC-TAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGT
** * *
4168720 AGTGGAGTGGATTGAAGACT
65 AGTGGAGCAGATCGAAGACC
*
4168740 CACCTTAA-CTCCCTAAGCAGTAGGGTAA
1 CGCCTTAATC-CCCTAAGCAGTAGGGTAA
4168768 TAGGCTAAGA
Statistics
Matches: 496, Mismatches: 30, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
83 3 0.01
84 414 0.83
85 6 0.01
86 4 0.01
87 69 0.14
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACC
Found at i:4168975 original size:44 final size:44
Alignment explanation
Indices: 4168918--4169405 Score: 553
Period size: 44 Copynumber: 11.1 Consensus size: 44
4168908 AATCTAAGAT
* *
4168918 GATTTAGCGTCTCTGTATTGTCAGAAAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
4168962 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATAGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * * * *
4169006 GATTTGGTGTCTCTATATTGTTAGAGGGCAGATTGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
4169050 GATTTGGCGTCTCTATATTG-CTAGAGGGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTC-AGAGAGCAGATCGAAGATAGCA
4169094 GATTTGGCGTCTCTGTATTGTCAGAG-GACAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAG-CAGATCGAAGATAGCA
*
4169138 GATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
4169182 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * * *
4169226 GATTTGGCATCTCTGTATTTTCAGAGAGCAAATTGAAGATATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAG--ATAGCA
* * * *
4169272 GATTTGGCTTTCACGTGT-TT-ACACTGA-AGCAGATCTAAGAT----
1 GATTTGGC-GTCTC-TGTATTGTCA--GAGAGCAGATCGAAGATAGCA
* * * *
4169313 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTATT-GTCAGAGAGCAGATCGAAGATAGCA
* * * *
4169358 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATT-GTCAGAGAGCAGATCGAAGATAGCA
4169403 GAT
1 GAT
4169406 ATCGCCTTCT
Statistics
Matches: 392, Mismatches: 34, Indels: 35
0.85 0.07 0.08
Matches are distributed among these distances:
39 3 0.01
40 6 0.02
41 21 0.05
42 2 0.01
43 1 0.00
44 275 0.70
45 50 0.13
46 15 0.04
47 14 0.04
48 5 0.01
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
Found at i:4169344 original size:41 final size:42
Alignment explanation
Indices: 4169299--4169400 Score: 152
Period size: 45 Copynumber: 2.4 Consensus size: 42
4169289 TTTACACTGA
*
4169299 AGCAGATCTAAGAT-GATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCAAAGATAGATTTGGCGTCTCTGTATTAGACGGGG
*
4169340 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCAAAGAT---AGATTTGGCGTCTCTGTATTAGACGGGG
4169385 AGCAGATCAAAGATAG
1 AGCAGATCAAAGATAG
4169401 CAGATATCGC
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
41 13 0.24
42 2 0.04
45 40 0.73
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (42 bp):
AGCAGATCAAAGATAGATTTGGCGTCTCTGTATTAGACGGGG
Found at i:4169370 original size:45 final size:45
Alignment explanation
Indices: 4169313--4169405 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 45
4169303 GATCTAAGAT
*
4169313 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
*
4169358 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
4169403 GAT
1 GAT
4169406 ATCGCCTTCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (45 bp):
GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
Found at i:4169775 original size:19 final size:19
Alignment explanation
Indices: 4169750--4169856 Score: 154
Period size: 17 Copynumber: 5.9 Consensus size: 19
4169740 ATAATCTTCA
4169750 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
4169769 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
4169788 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
4169805 ATTAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
4169823 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
4169840 ATGAT-TGCAATCTTAGA
1 ATGATATGCAATCTTAGA
4169857 AGATATGATT
Statistics
Matches: 79, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
17 31 0.39
18 25 0.32
19 23 0.29
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:4169820 original size:35 final size:35
Alignment explanation
Indices: 4169758--4169856 Score: 171
Period size: 35 Copynumber: 2.8 Consensus size: 35
4169748 CAATGATATG
*
4169758 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
*
4169794 CAATCTTAGATATTATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
4169829 CAATCTTAGATATGATTGCAATCTTAGA
1 CAATCTTAGATATGATTGCAATCTTAGA
4169857 AGATATGATT
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
35 46 0.77
36 14 0.23
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:4169879 original size:23 final size:21
Alignment explanation
Indices: 4169801--4169866 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 21
4169791 ATACAATCTT
*
4169801 AGATATTATTGCAATCTT---
1 AGATATGATTGCAATCTTAGA
*
4169819 AGATATGA-TACAATCTTAG-
1 AGATATGATTGCAATCTTAGA
4169838 --ATATGATTGCAATCTTAGA
1 AGATATGATTGCAATCTTAGA
4169857 AGATATGATT
1 AGATATGATT
4169867 TTGTAATCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
17 14 0.36
18 17 0.44
21 8 0.21
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (21 bp):
AGATATGATTGCAATCTTAGA
Found at i:4172544 original size:14 final size:15
Alignment explanation
Indices: 4172508--4172544 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
4172498 TTTCTTTTAT
*
4172508 TTATTATAACTATTA
1 TTATTATATCTATTA
4172523 -TATTATATC-ATTA
1 TTATTATATCTATTA
4172536 TTATTATAT
1 TTATTATAT
4172545 TTTAAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATTATATCTATTA
Found at i:4174701 original size:20 final size:20
Alignment explanation
Indices: 4174665--4174707 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
4174655 GGCCTTTTAC
*
4174665 AAAAATAAACCATTACAACT
1 AAAAATAAACCATTACAAAT
*
4174685 AAAATTAAACCCA-TACAAAT
1 AAAAATAAA-CCATTACAAAT
4174705 AAA
1 AAA
4174708 CCCAAAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.19
Consensus pattern (20 bp):
AAAAATAAACCATTACAAAT
Found at i:4175882 original size:3 final size:3
Alignment explanation
Indices: 4175876--4176018 Score: 116
Period size: 3 Copynumber: 48.0 Consensus size: 3
4175866 ATTAAATTTC
* * * * * *
4175876 TTA TTA TTA CTA TTA TTT TTA TTCC TT- TTA CTA TCTA TTA TCA ATA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA T-TA TTA TTA TTA
* * *
4175922 -TA TTA TTA CTA -TA GCTA TTA TTA TTA TTA -TA TTA TTA TCA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
4175965 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTAA TT- TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
*
4176010 CTA TTA TTA
1 TTA TTA TTA
4176019 CACTTATATG
Statistics
Matches: 114, Mismatches: 17, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
2 10 0.09
3 94 0.82
4 10 0.09
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:4176108 original size:23 final size:25
Alignment explanation
Indices: 4176082--4176139 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 25
4176072 TATCATCACC
*
4176082 TTAATATTA-ATATGTATTTATTT-
1 TTAATATTATATATGTATATATTTA
*
4176105 TTAACA-TATATATGTATATATTTA
1 TTAATATTATATATGTATATATTTA
4176129 TGTAATATTAT
1 T-TAATATTAT
4176140 TAATAATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 2 0.07
23 18 0.64
24 1 0.04
25 4 0.14
26 3 0.11
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (25 bp):
TTAATATTATATATGTATATATTTA
Found at i:4176310 original size:23 final size:23
Alignment explanation
Indices: 4176275--4176336 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
4176265 CATCATATGT
4176275 ATATATATTATGTACATACTTTTA
1 ATAT-TATTATGTACATACTTTTA
** *
4176299 ATATTATTATGTATTTATTTTTA
1 ATATTATTATGTACATACTTTTA
4176322 ATA-TA-TATGTACATA
1 ATATTATTATGTACATA
4176337 TTTATGTAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 8 0.24
22 2 0.06
23 19 0.58
24 4 0.12
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (23 bp):
ATATTATTATGTACATACTTTTA
Found at i:4176338 original size:25 final size:23
Alignment explanation
Indices: 4176294--4176341 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
4176284 ATGTACATAC
**
4176294 TTTTAATATTATTATGTATTTAT
1 TTTTAATATTATTACATATTTAT
4176317 TTTTAATATATATGTACATATTTAT
1 TTTTAATAT-TAT-TACATATTTAT
4176342 GTAGTATTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
24 3 0.14
25 9 0.43
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (23 bp):
TTTTAATATTATTACATATTTAT
Found at i:4176432 original size:18 final size:18
Alignment explanation
Indices: 4176409--4176475 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 18
4176399 TTATGTACAC
4176409 TTTTTTATTTCTATT-TTA
1 TTTTTTATTT-TATTATTA
*
4176427 TTTTTTATTTTTTTATTA
1 TTTTTTATTTTATTATTA
*
4176445 TTTTTTATTTGTCAATATTA
1 TTTTTTATTT-T-ATTATTA
*
4176465 TTTATTATTTT
1 TTTTTTATTTT
4176476 TCTAATATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
17 3 0.07
18 23 0.55
19 2 0.05
20 14 0.33
ACGTcount: A:0.19, C:0.03, G:0.01, T:0.76
Consensus pattern (18 bp):
TTTTTTATTTTATTATTA
Found at i:4176463 original size:20 final size:21
Alignment explanation
Indices: 4176440--4176484 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
4176430 TTTATTTTTT
*
4176440 TATTATTTTTTATTTGTC-AA
1 TATTATTTATTATTTGTCTAA
*
4176460 TATTATTTATTATTTTTCTAA
1 TATTATTTATTATTTGTCTAA
4176481 TATT
1 TATT
4176485 TTGATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (21 bp):
TATTATTTATTATTTGTCTAA
Found at i:4176508 original size:7 final size:8
Alignment explanation
Indices: 4176480--4176513 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
4176470 TATTTTTCTA
4176480 ATATTTTG
1 ATATTTTG
4176488 ATATTTTG
1 ATATTTTG
4176496 ATATTTT-
1 ATATTTTG
4176503 ATATTTT-
1 ATATTTTG
4176510 ATAT
1 ATAT
4176514 ATTTTTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (8 bp):
ATATTTTG
Found at i:4176518 original size:16 final size:15
Alignment explanation
Indices: 4176480--4176513 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
4176470 TATTTTTCTA
4176480 ATATTTTGATATTTT
1 ATATTTTGATATTTT
4176495 GATATTTT-ATATTTT
1 -ATATTTTGATATTTT
4176510 ATAT
1 ATAT
4176514 ATTTTTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 7 0.39
16 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (15 bp):
ATATTTTGATATTTT
Found at i:4179948 original size:6 final size:6
Alignment explanation
Indices: 4179939--4179965 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
4179929 ATTTTTATTT
4179939 AATTAA AATTAA AATTAA AATTAA AAT
1 AATTAA AATTAA AATTAA AATTAA AAT
4179966 ATTTAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AATTAA
Found at i:4180629 original size:30 final size:30
Alignment explanation
Indices: 4180593--4180649 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
4180583 CAGTTTGACC
4180593 ATTAGTTCTCGACTCAACTCATTTGATTGG
1 ATTAGTTCTCGACTCAACTCATTTGATTGG
*
4180623 ATTAGTTCTCGATTCAACTCATTTGAT
1 ATTAGTTCTCGACTCAACTCATTTGAT
4180650 CGGTTCAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (30 bp):
ATTAGTTCTCGACTCAACTCATTTGATTGG
Found at i:4183021 original size:15 final size:15
Alignment explanation
Indices: 4182980--4183010 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4182970 GTTGCTAAAT
*
4182980 ATAATAGTAATAGTA
1 ATAATAATAATAGTA
4182995 ATAATAATAATAGTA
1 ATAATAATAATAGTA
4183010 A
1 A
4183011 ATATGATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (15 bp):
ATAATAATAATAGTA
Found at i:4184658 original size:44 final size:44
Alignment explanation
Indices: 4184604--4184747 Score: 136
Period size: 44 Copynumber: 3.3 Consensus size: 44
4184594 ACCTATTACC
*
4184604 CTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGCTCCA
* * * * * *
4184648 CTACTGCTTAGGGAG-ATAA-GATCTGCAAT-TT-AACCTGTTACC-
1 CTACTGCTTAGGG-GTTTAAGGTTCTTC-ATCTTCGATCTGCT-CCA
* * *
4184690 CTACTGCTTAGGGGTTTAAGGTTCTTCTTCTTCGATCTACACCA
1 CTACTGCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGCTCCA
4184734 CTACTGCTTAGGGG
1 CTACTGCTTAGGGG
4184748 GATAAGATCT
Statistics
Matches: 76, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
41 1 0.01
42 22 0.29
43 18 0.24
44 34 0.45
45 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (44 bp):
CTACTGCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGCTCCA
Found at i:4184658 original size:86 final size:86
Alignment explanation
Indices: 4184513--4184795 Score: 293
Period size: 86 Copynumber: 3.3 Consensus size: 86
4184503 TTTCAGCCTG
* * * * *
4184513 TTACCCTACTGCTTAAGGGATTAAGGCTT-GTCATCTTTGATCTGTTTCC-CTACTGCTTAGGG-
1 TTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCATCTTCGATCTG-CTCCACTACTGCTTAGGGA
** * *
4184575 TTTTAGATCTGTATACTCAACCTA
64 GATAAGATCTGCA-ACTCAACCTA
*
4184599 TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
1 TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* * *
4184664 TAAGATCTGCAATTTAACCTG
66 TAAGATCTGCAACTCAACCTA
* * * *
4184685 TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCTTCTTCGATCTACACCACTACTGCTTAGGGGGA
1 TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* * **** *
4184750 TAAGATCTACAATTTGGTCTG
66 TAAGATCTGCAACTCAACCTA
*
4184771 TTTCCCTACTGCTTAGGGGTTTAAG
1 TTACCCTACTGCTTAGGGGTTTAAG
4184796 ATCCTATGAA
Statistics
Matches: 172, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
85 5 0.03
86 158 0.92
87 9 0.05
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (86 bp):
TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
TAAGATCTGCAACTCAACCTA
Found at i:4185166 original size:43 final size:42
Alignment explanation
Indices: 4185085--4185282 Score: 200
Period size: 43 Copynumber: 4.6 Consensus size: 42
4185075 CAGCCTATTA
** * * *
4185085 CCCTACTGCTTAGGGGTTAAGGCCCATCTTCTTTGATCTGTTT
1 CCCTACTGCTTAGGGGTTAA-GATCTTCATCTTCGATCTGTTT
4185128 CCCTACTGCTTAGGAGGTTAAGATCTTCATCTTCGATCTGTTT
1 CCCTACTGCTTAGG-GGTTAAGATCTTCATCTTCGATCTGTTT
* * * * * *
4185171 CCCTACTGCCTAGGGAGATAAGATCTGCA-ATTCGGTCTGTTA
1 CCCTACTGCTTAGGG-GTTAAGATCTTCATCTTCGATCTGTTT
* * * *
4185213 CCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGA-TCTTCATCTTCGATCTGTTT
4185257 CCCTACTGCTTAGGGGGTTAAGATCT
1 CCCTACTGCTTA-GGGGTTAAGATCT
4185283 GTAAACCTTC
Statistics
Matches: 125, Mismatches: 24, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 28 0.22
43 60 0.48
44 32 0.26
45 4 0.03
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (42 bp):
CCCTACTGCTTAGGGGTTAAGATCTTCATCTTCGATCTGTTT
Found at i:4185251 original size:86 final size:85
Alignment explanation
Indices: 4185121--4185283 Score: 229
Period size: 86 Copynumber: 1.9 Consensus size: 85
4185111 TCTTCTTTGA
* * * *
4185121 TCTGTTTCCCTACTGCTTAGGAGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCCTAGGG
1 TCTGTTACCCTACCGATTAGGAGGTTAAGACCTTCATCTTCGATCTGTTTCCCTACTGCCTAGGG
4185186 AGATAAGATCTGCAATTCGG
66 AGATAAGATCTGCAATTCGG
* *
4185206 TCTGTTACCCTACCGATTAGG-GGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAG
1 TCTGTTACCCTACCGATTAGGAGG-TTAAGA-CCTTCATCTTCGATCTGTTTCCCTACTGCCTAG
* *
4185270 GGGGTTAAGATCTG
64 GGAGATAAGATCTG
4185284 TAAACCTTCA
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
84 2 0.03
85 24 0.35
86 42 0.62
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (85 bp):
TCTGTTACCCTACCGATTAGGAGGTTAAGACCTTCATCTTCGATCTGTTTCCCTACTGCCTAGGG
AGATAAGATCTGCAATTCGG
Found at i:4186158 original size:1 final size:1
Alignment explanation
Indices: 4186147--4186177 Score: 53
Period size: 1 Copynumber: 31.0 Consensus size: 1
4186137 GCCTCTCTCC
*
4186147 TTTTCTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
4186178 AGGCGAAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:4197763 original size:41 final size:40
Alignment explanation
Indices: 4197718--4197942 Score: 201
Period size: 41 Copynumber: 5.6 Consensus size: 40
4197708 TTCAGCCTTA
4197718 CCCTACTGCTTAGGGGTTAAGCCATCTTC-TTTGATCTGTTT
1 CCCTACTGCTTAGGGGTTAAG--ATCTTCATTTGATCTGTTT
4197759 CCCTACTGCTTAGGGGTTAAGATCTTCATCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTAAGATCTTCAT-TT-GATCTGTTT
* * * * * *
4197801 CCCTACTGCTTAGGAGATAAGATCTGCAATTCGGTCTGTTA
1 CCCTACTGCTTAGGGGTTAAGATCTTC-ATTTGATCTGTTT
* * * * **
4197842 CCCTAC-GATTAGGGTTTAAGACCCTTCGTCCGA-C-GTTT
1 CCCTACTGCTTAGGGGTTAAGA-TCTTCATTTGATCTGTTT
* * *
4197880 CCCTACTGCTTAGGGGTTAAGATCTT-ATCTTCAGCCTGTTA
1 CCCTACTGCTTAGGGGTTAAGATCTTCAT-TTGA-TCTGTTT
4197921 CCCTACTGCTTA-GGGTTAAGAT
1 CCCTACTGCTTAGGGGTTAAGAT
4197943 GAATTCACTG
Statistics
Matches: 150, Mismatches: 24, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 20 0.13
40 26 0.17
41 54 0.36
42 34 0.23
43 2 0.01
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (40 bp):
CCCTACTGCTTAGGGGTTAAGATCTTCATTTGATCTGTTT
Found at i:4197919 original size:79 final size:80
Alignment explanation
Indices: 4197718--4197941 Score: 233
Period size: 79 Copynumber: 2.8 Consensus size: 80
4197708 TTCAGCCTTA
* * * *
4197718 CCCTACTGCTTAGGGGTTAAGCCATCTTCTTTGA-TCTGTTTCCCTACTGCTTAGGGGTTAAGAT
1 CCCTACTGCTTAGGGGTTAAG--ATCTTATTTCAGTCTGTTACCCTACTGCTTA-GGGTTAAGAC
4197782 CTTCATCTTCGATCTGTTT
63 CTTCATC-TCGATCTGTTT
* * * * * *
4197801 CCCTACTGCTTAGGAGATAAGATCTGCAATTCGGTCTGTTACCCTAC-GATTAGGGTTTAAGACC
1 CCCTACTGCTTAGGGGTTAAGATCT-TATTTCAGTCTGTTACCCTACTGCTTAGGG-TTAAGA-C
*
4197865 CTTCGTC-CGA-C-GTTT
63 CTTCATCTCGATCTGTTT
*
4197880 CCCTACTGCTTAGGGGTTAAGATCTTATCTTCAGCCTGTTACCCTACTGCTTAGGGTTAAGA
1 CCCTACTGCTTAGGGGTTAAGATCTTAT-TTCAGTCTGTTACCCTACTGCTTAGGGTTAAGA
4197942 TGAATTCACT
Statistics
Matches: 117, Mismatches: 18, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
78 1 0.01
79 49 0.42
80 8 0.07
81 10 0.09
82 12 0.10
83 37 0.32
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (80 bp):
CCCTACTGCTTAGGGGTTAAGATCTTATTTCAGTCTGTTACCCTACTGCTTAGGGTTAAGACCTT
CATCTCGATCTGTTT
Found at i:4198759 original size:1 final size:1
Alignment explanation
Indices: 4198753--4198777 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
4198743 CCTCTCTCCC
4198753 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
4198778 AGGCGAAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:4210587 original size:15 final size:15
Alignment explanation
Indices: 4210546--4210576 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4210536 GTTGCTAAAT
*
4210546 ATAATAGTAATAGTA
1 ATAATAATAATAGTA
4210561 ATAATAATAATAGTA
1 ATAATAATAATAGTA
4210576 A
1 A
4210577 ATATGATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (15 bp):
ATAATAATAATAGTA
Found at i:4211274 original size:12 final size:12
Alignment explanation
Indices: 4211257--4211294 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
4211247 GTAAACAAAG
*
4211257 AAGAAAAAAGTA
1 AAGAAAAAAGAA
4211269 AAG-AAAAAGAA
1 AAGAAAAAAGAA
4211280 AAGAAAAAAAGAA
1 AAG-AAAAAAGAA
4211293 AA
1 AA
4211295 CCGATTCGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 10 0.43
12 3 0.13
13 10 0.43
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.03
Consensus pattern (12 bp):
AAGAAAAAAGAA
Found at i:4215750 original size:20 final size:21
Alignment explanation
Indices: 4215703--4215750 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
4215693 CAAAAGGAGT
4215703 AAATTATGTAAAGTGGATACC
1 AAATTATGTAAAGTGGATACC
4215724 AAATTATGTAAAGTGGATACC
1 AAATTATGTAAAGTGGATACC
4215745 -AATTAT
1 AAATTAT
4215751 TCTAACCTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31
Consensus pattern (21 bp):
AAATTATGTAAAGTGGATACC
Found at i:4219799 original size:21 final size:21
Alignment explanation
Indices: 4219773--4219820 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
4219763 GCATTCAAAC
4219773 TCCTTAAAGAATGCTGTAGAT
1 TCCTTAAAGAATGCTGTAGAT
4219794 TCCTTAAAGAATGCTGTAGAT
1 TCCTTAAAGAATGCTGTAGAT
*
4219815 TTCTTA
1 TCCTTA
4219821 GTTTTGCAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.38
Consensus pattern (21 bp):
TCCTTAAAGAATGCTGTAGAT
Found at i:4222347 original size:31 final size:32
Alignment explanation
Indices: 4222284--4222354 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
4222274 TTGATATTTT
* *
4222284 ATATATTTTTATAATTAAATTTAAATTTTAAA
1 ATATATTTTTATAATTAAATTGAAATTATAAA
*
4222316 ATAT-TTTTTATTATTTAAATTGAAA-TATAAA
1 ATATATTTTTA-TAATTAAATTGAAATTATAAA
*
4222347 AAATATTT
1 ATATATTT
4222355 ATCCAAATCT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
31 14 0.42
32 19 0.58
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (32 bp):
ATATATTTTTATAATTAAATTGAAATTATAAA
Found at i:4222682 original size:29 final size:29
Alignment explanation
Indices: 4222648--4222706 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
4222638 ATATATAATG
4222648 TGATAGTTTTATGCTGTTTTATAATTAAC
1 TGATAGTTTTATGCTGTTTTATAATTAAC
4222677 TGATAGTTTTATGCTGTTTTATAATTAAC
1 TGATAGTTTTATGCTGTTTTATAATTAAC
4222706 T
1 T
4222707 ACTACTTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.07, G:0.14, T:0.53
Consensus pattern (29 bp):
TGATAGTTTTATGCTGTTTTATAATTAAC
Found at i:4224923 original size:14 final size:14
Alignment explanation
Indices: 4224900--4224932 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
4224890 GAAATCTGAA
4224900 ATAAATAATTT-AT
1 ATAAATAATTTCAT
4224913 ATAACATAATTTCAT
1 ATAA-ATAATTTCAT
4224928 ATAAA
1 ATAAA
4224933 ACAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 8 0.44
15 6 0.33
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
ATAAATAATTTCAT
Found at i:4225222 original size:2 final size:2
Alignment explanation
Indices: 4225215--4225261 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
4225205 TAAAACAACA
*
4225215 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4225257 AT AT A
1 AT AT A
4225262 AAAGAGGAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:4227185 original size:44 final size:45
Alignment explanation
Indices: 4227114--4227631 Score: 164
Period size: 44 Copynumber: 11.6 Consensus size: 45
4227104 TTGATCCGAC
* *
4227114 CTACTGCAACTTCAGAG-GTATAGGATTTG-TAGCATT-AATCTGCT
1 CTACTGCAACTTCAGAGAG-ATAAGATTTGCTAGC-TTCAATCTACT
* *
4227158 CTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGTCTACT
1 CTACTGCAACTTCAGAGAGATAAGATTTGCTAGCTTCAATCTACT
* * * *
4227203 C-ACTGCAACTTCAGGGAGATAAGA-CT-CATAACTTCAA-CTTGCT
1 CTACTGCAACTTCAGAGAGATAAGATTTGC-TAGCTTCAATC-TACT
* * * **
4227246 CCACTGCAACTTTAGGGAGATAAGGTTTGTGATTTG-TAGCTTCAATCTGTT
1 CTACTGCAACTTCAGAGAGATAA-------GATTTGCTAGCTTCAATCTACT
* ** * * * ** **
4227297 CCACTTTATCTTCAGGGAAATAAGATTTGCTATATTCAGGCTACT
1 CTACTGCAACTTCAGAGAGATAAGATTTGCTAGCTTCAATCTACT
* * * * * * *
4227342 CCACTGCAACTTCA-AGAAGATAAGACTT-ATAACTTCAACCTGCC
1 CTACTGCAACTTCAGAG-AGATAAGATTTGCTAGCTTCAATCTACT
* * * * * *
4227386 CCACTGCAACTTTAGGGGGATAATG-TTTG-TGGCTTCAACCTACT
1 CTACTGCAACTTCAGAGAGATAA-GATTTGCTAGCTTCAATCTACT
* * * * * * ** *
4227430 CCATTACAACTTCAG-G-G---AGATTAGGTAGATTTGATCCGAC-
1 CTACTGCAACTTCAGAGAGATAAGATTTGCTAGCTTCAAT-CTACT
* * * * *
4227470 CTACTACAACTTCAGAG-GTATAGGGTTTG-TAGCTTTAATCTGCT
1 CTACTGCAACTTCAGAGAG-ATAAGATTTGCTAGCTTCAATCTACT
* * *
4227514 CTACTGCAACTTCAGATAGATAAGATTTGCTATCTTCAGTCTACT
1 CTACTGCAACTTCAGAGAGATAAGATTTGCTAGCTTCAATCTACT
* * * * * *
4227559 CCACTGCAACTTCA-AGGAGATAAGACTCG-TAACTTCAACCTGCT
1 CTACTGCAACTTCAGA-GAGATAAGATTTGCTAGCTTCAATCTACT
* * *
4227603 CCACTACAACTTCA-AGGAGATAAGGTTTG
1 CTACTGCAACTTCAGA-GAGATAAGATTTG
4227632 TGATTTGTAG
Statistics
Matches: 357, Mismatches: 84, Indels: 66
0.70 0.17 0.13
Matches are distributed among these distances:
38 1 0.00
39 4 0.01
40 18 0.05
41 5 0.01
42 3 0.01
43 15 0.04
44 197 0.55
45 81 0.23
51 31 0.09
52 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (45 bp):
CTACTGCAACTTCAGAGAGATAAGATTTGCTAGCTTCAATCTACT
Found at i:4227982 original size:64 final size:64
Alignment explanation
Indices: 4227881--4228008 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
4227871 TCATGTATCT
4227881 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
4227945 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAACTGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
4228009 TTATGATATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:4229814 original size:16 final size:16
Alignment explanation
Indices: 4229794--4229827 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
4229784 TTTTTTATTT
*
4229794 ATTTTT-TTAAGACCA
1 ATTTTTATTTAGACCA
4229809 ATTTTTATTTAGACCA
1 ATTTTTATTTAGACCA
4229825 ATT
1 ATT
4229828 ACAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (16 bp):
ATTTTTATTTAGACCA
Found at i:4230389 original size:15 final size:14
Alignment explanation
Indices: 4230371--4230406 Score: 63
Period size: 15 Copynumber: 2.5 Consensus size: 14
4230361 TTTTGGGTTT
4230371 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGG-AA
4230386 TTTTTTTGCTGGAA
1 TTTTTTTGCTGGAA
4230400 TTTTTTT
1 TTTTTTT
4230407 CTTTTTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.14, C:0.06, G:0.17, T:0.64
Consensus pattern (14 bp):
TTTTTTTGCTGGAA
Found at i:4230714 original size:30 final size:30
Alignment explanation
Indices: 4230644--4230714 Score: 106
Period size: 30 Copynumber: 2.4 Consensus size: 30
4230634 ATTTAGGGTT
* *
4230644 AAATGTAATTTAAGGAAAGTTTAGGGGTCT
1 AAATGTAATTTAAAGAAAGTTTAGGGGTCA
* *
4230674 AAGTGAAATTTAAAGAAAGTTTAGGGGTCA
1 AAATGTAATTTAAAGAAAGTTTAGGGGTCA
4230704 AAATGTAATTT
1 AAATGTAATTT
4230715 TTTTTATTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.32
Consensus pattern (30 bp):
AAATGTAATTTAAAGAAAGTTTAGGGGTCA
Found at i:4231096 original size:78 final size:79
Alignment explanation
Indices: 4230972--4232981 Score: 911
Period size: 72 Copynumber: 25.8 Consensus size: 79
4230962 AAAAGCCAAA
* * * *
4230972 AAATTGAAAATACCTCAACGTGTGACCTGAAGCTTAACTCACCTCTCGCAATATGAGTTAATTTT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
4231037 TTTTTG-AAAACAG
66 TTTTTGAAAAACAG
* * * *
4231050 -AATTGAAAAATACCTCGGCGTGTGACCCGAGGTTCAACTCATCTCTCGC-A-ATGAGATT--TT
1 AAATTG-AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG-TTGATT
4231110 TTTTTTTGAAAAACAG
64 TTTTTTTGAAAAACAG
* * ** *
4231126 AAATTGAAAATACCTCAGTGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
4231189 TTTTTGAAAAACAG
66 TTTTTGAAAAACAG
* * * *
4231203 AAATTAAAAATACCTC-GACGCGTGACC-GAGCCTCAACTCATCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAATACCTCAG-CGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
4231266 TTTTTTGAAAAACAG
65 TTTTTTGAAAAACAG
* * *
4231281 AAATTGAAAATATCTC-GTGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA--TT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
4231343 TTTTTGAAAAATAG
66 TTTTTGAAAAACAG
* ** ** **** *
4231357 AAATTAAAAATAGAATTTG-AAAAGACCTCGGCATGTGGTCCGAGACTCAACTCATCTCTCGCAA
1 AAATTGAAAATA-CCTCAGCGTGTGACCT--G-A-G-GCT-C-A-ACTC-A--C--CTCTCGCAA
**
4231421 TATGAGTTGA----TTTTTGACGAACAG
52 TATGAGTTGATTTTTTTTTGAAAAACAG
* * * * *
4231445 -AA-TGACAATACCTCAGCATATGAGCC-AAGGCTCAACTCACCTCTCAC-ATATGAGTTGA-TT
1 AAATTGAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
4231505 TTGTTTGAAAAA-TG
65 TTTTTTGAAAAACAG
** *** * * *
4231519 AAATT-AAAA-A-CAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTGAC
1 AAATTGAAAATACCTCAGCGTG---TGACCT--G-A---GGCTC-A-ACTC-AC-C-TCTC-G-C
**
4231581 AATATGAGTTGA----TTTTTGACGAACAG
50 AATATGAGTTGATTTTTTTTTGAAAAACAG
* *
4231607 AAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TT
1 AAATTGAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
**
4231670 TTTTTTGACGAACAG
65 TTTTTTGAAAAACAG
* * * *
4231685 AAATTGAAAATAGATTTTGAAAATACTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAAT
1 AAATTG--AA-A-A---T----A-CCTCAG-CGTGTGACCTGAGGCTCAACTCACCTCTCGCAAT
* * *
4231749 GTGAGTTGA-TTTTTTTTGAAAAATAT
53 ATGAGTTGATTTTTTTTTGAAAAACAG
* * *
4231775 AAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA--
1 AAATTG--AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
4231838 TTTTTTTGAAAGACAG
64 TTTTTTTGAAAAACAG
* * * * *
4231854 AAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACT-ACCTCTCACAATATGAGTCGA-TT
1 AAATTGAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
**
4231916 TTTTTT-AAAGGCA-
65 TTTTTTGAAAAACAG
** * *** * * * * * * *
4231929 AAATTGAAAAATAGAAATTGAAAATACTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAAT
1 AAATTG-AAAAT---ACCTCAGCGT-GT-GACCTGAG-GCT----C-AA-CTCACCTCTCGCAAT
* * *
4231994 ACGAGTTG--GTTTTTTTG-ACAACAG
53 ATGAGTTGATTTTTTTTTGAAAAACAG
* * *
4232018 AAATTGAAATTACCTCAGCGTGT--CCTGAGGCTTAACTCA-CTCTTG-AATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
** * *
4232079 TTTTTTTGAATGATAA
64 TTTTTTTGAAAAACAG
* * * ** *
4232095 AAATTG-AAATAACTCAGCATGT--CTTGAGGCTCAACTCATTTCTCTCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
4232157 TTTTTTTG-AAAACAG
64 TTTTTTTGAAAAACAG
* * ** *
4232172 AAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---A
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
4232232 TTTTTG-AAAACAG
66 TTTTTGAAAAACAG
* * * **
4232245 AAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
4232304 ATTTTG-AAAACAG
66 TTTTTGAAAAACAG
* * * **
4232317 AAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
***
4232380 TGAAAACAT-AAATTGAACAG
66 T----TTTTGAAA---AACAG
* * * *
4232400 AAATTGAAAATACCTCAACATGT--CTTGAGGCTCAACTCACCTCTC-CAATATGATTTGA---T
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
4232459 TTTTTGAAAAGCAG
66 TTTTTGAAAAACAG
* ** ** *
4232473 AAATTGAAAATACCTCA--ATGTG-TTTGAGGCTCAACTCATTTATCGCAATATGAGTTGA----
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
4232531 ATTTTG-AAAACAG
66 TTTTTGAAAAACAG
* * * ** *
4232544 AAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---A
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
4232604 TTTTTG--AAACAG
66 TTTTTGAAAAACAG
* * * ** *
4232616 AAATTG-AATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA----
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
4232674 ATTTTG-AAAATAG
66 TTTTTGAAAAACAG
* * * **
4232687 AAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-T
****
4232750 TGAAAAACAT-AAATTGAACAG
65 T----TTTTTGAAA---AACAG
* * * *
4232771 AAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAATTCATCTCTCGCAATATGAGTTGA---T
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
4232831 TTTTTGAAAAGCAG
66 TTTTTGAAAAACAG
* * * * **
4232845 AAATTGAAAATACCTCA--ATGTGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGA----
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
4232904 ATTTTG-AAAACAG
66 TTTTTGAAAAACAG
* * * ** *
4232917 AAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
4232980 TT
66 TT
4232982 GAAACAGAAA
Statistics
Matches: 1560, Mismatches: 228, Indels: 290
0.75 0.11 0.14
Matches are distributed among these distances:
70 5 0.00
71 88 0.06
72 272 0.17
73 129 0.08
74 62 0.04
75 47 0.03
76 177 0.11
77 125 0.08
78 203 0.13
79 29 0.02
80 55 0.04
81 17 0.01
82 26 0.02
83 49 0.03
84 66 0.04
85 15 0.01
86 13 0.01
87 16 0.01
88 37 0.02
89 34 0.02
90 91 0.06
91 4 0.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (79 bp):
AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTTTGAAAAACAG
Found at i:4231179 original size:154 final size:156
Alignment explanation
Indices: 4230972--4232973 Score: 837
Period size: 154 Copynumber: 12.9 Consensus size: 156
4230962 AAAAGCCAAA
** * * *
4230972 AAATTGAAAATACCTCAACGTGTGACCTGAAGCTTAACTCACCTCTCGCAATATGAGTTAATTTT
1 AAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * **
4231037 TTTTTG-AAAACAG-AATTGAAAAATACCTCGGCGTGTGACCCGAGGTTCAACTCATCTCTCGC-
66 TTTTTGAAAAACAGAAATT-AAAAATACCTCGACGCGTGA-CCGAGCCTCAACTCATCTCTCGCA
4231099 A-ATGAGATT-TTTTTTTTTGAAAAACAG
129 ATATGAG-TTATTTTTTTTTGAAAAACAG
* ** *
4231126 AAATTGAAAATACCTCAGTGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TT
1 AAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
4231189 TTTTTGAAAAACAGAAATTAAAAATACCTCGACGCGTGACCGAGCCTCAACTCATCTCTCGCAAT
66 TTTTTGAAAAACAGAAATTAAAAATACCTCGACGCGTGACCGAGCCTCAACTCATCTCTCGCAAT
4231254 ATGAGTTGATTTTTTTTTGAAAAACAG
131 ATGAGTT-ATTTTTTTTTGAAAAACAG
* *
4231281 AAATTGAAAATATCTC-GTGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA--TT
1 AAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * ** * *
4231343 TTTTTGAAAAATAGAAATTAAAAATAGAATTTGAAAAGACCTCGGCATGTGGTCCGAGACTCAAC
66 TTTTTGAAAAACAGAAATT---AA-A-AA--T------ACCTCGACGCGT-GACCGAGCCTCAAC
**
4231408 TCATCTCTCGCAATATGAGTTGA----TTTTTGACGAACAG
117 TCATCTCTCGCAATATGAGTT-ATTTTTTTTTGAAAAACAG
* ** * * *
4231445 -AA-TGACAATACCTCAGCATATGAGCC-AAGGCTCAACTCACCTCTCAC-ATATGAGTTGATTT
1 AAATTGAAAATACCTCAGTGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * * * * ** * *
4231506 TGTTTGAAAAATGAAATTAAAAACAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACT
65 T-TTT------T----TGAAAAACAGAAATTAAAAATACCTCGACGCGT-GACCGAGCCTCAACT
* **
4231571 CACCTCT-GACAATATGAGTTGA----TTTTTGACGAACAG
118 CATCTCTCG-CAATATGAGTT-ATTTTTTTTTGAAAAACAG
* * *
4231607 AAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TT
1 AAATTGAAAATACCTCAGTGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
** * ** *
4231670 TTTTTTGACGAACAGAAATTGAAAATAGATTTTGAAAATACTCGACATGTGACCCGAGGCTCAAC
65 TTTTTTGAAAAACAGAAATT--AAA-A-A---T----A-CCTCGACGCGTGA-CCGAGCCTCAAC
* * *
4231735 TCA-CATCTCGCAATGTGAGTTGA-TTTTTTTTGAAAAATAT
117 TCATC-TCTCGCAATATGAGTT-ATTTTTTTTTGAAAAACAG
* *
4231775 AAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA--
1 AAATTG--AAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* * * * * * *
4231838 TTTTTTTGAAAGACAGAAATTGAAAATAGCTC-AGCGCGTGAGCCAAGGCTCAACT-ACCTCTCA
64 TTTTTTTGAAAAACAGAAATTAAAAATACCTCGA-CGCGTGA-CCGAGCCTCAACTCATCTCTCG
* *
4231901 CAATATGAGTCGATTTTTTTTAAAGGCAAAATTGAAAAATAG
127 CAATATGAGT-TA-TTTTTTT----------TTGAAAAACAG
* * * * *
4231943 AAATTGAAAATA-CTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTG--GTT
1 AAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * * * * *
4232005 TTTTTG-ACAACAGAAATTGAAATTACCTC-A-GCGTGTCCTGAGGCTTAACTCA-CTCTTG-AA
66 TTTTTGAAAAACAGAAATTAAAAATACCTCGACGCGTGACC-GAGCCTCAACTCATCTCTCGCAA
** * *
4232065 TATGAGTTGATTTTTTTTTTTGAATGATAA
130 TATGAGTT-A--TTTTTTTTTGAAAAACAG
* ** * ** *
4232095 AAATTG-AAATAACTCAGCATGT--CTTGAGGCTCAACTCATTTCTCTCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
* * * * * *
4232157 TTTTTTTG-AAAACAGAAATTGAAAATACCTC-A-GCATGTCTTGAGGCTCAACTCATTTCTCGC
64 TTTTTTTGAAAAACAGAAATTAAAAATACCTCGACGCGTGAC-CGAGCCTCAACTCATCTCTCGC
*
4232219 AATATGAGTTGA---ATTTTTG-AAAACAG
128 AATATGAGTT-ATTTTTTTTTGAAAAACAG
* ** * **
4232245 AAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----
1 AAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * * * * * *
4232304 ATTTTG-AAAACAGAAATTGAAATTACCTC-A-ACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
66 TTTTTGAAAAACAGAAATTAAAAATACCTCGACGCGTGAC-CGAGCCTCAACTCATCTCTCGCAA
***
4232366 TATGAGTTGATTTTTGAAAACAT-AAATTGAACAG
130 TATGAGTT-ATTTTT----TTTTGAAA---AACAG
*** * *
4232400 AAATTGAAAATACCTCAACATGT--CTTGAGGCTCAACTCACCTCTC-CAATATGATTTGA---T
1 AAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * ** *** * * *
4232459 TTTTTGAAAAGCAGAAATTGAAAATACCTC-A-ATGTGTTTGAGGCTCAACTCATTTATCGCAAT
66 TTTTTGAAAAACAGAAATTAAAAATACCTCGACGCGTGACCGAGCCTCAACTCATCTCTCGCAAT
*
4232522 ATGAGTTGA----ATTTTG-AAAACAG
131 ATGAGTT-ATTTTTTTTTGAAAAACAG
* ** * ** *
4232544 AAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---A
1 AAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * * * * * *
4232604 TTTTTG--AAACAGAAATT-GAATTACCTC-A-ACGTGTCTTGAGGCTCAACTCATTTCTCACAA
66 TTTTTGAAAAACAGAAATTAAAAATACCTCGACGCGTGAC-CGAGCCTCAACTCATCTCTCGCAA
* *
4232664 TATGAGTTGA----ATTTTG-AAAATAG
130 TATGAGTT-ATTTTTTTTTGAAAAACAG
* ** * **
4232687 AAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCT
1 AAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-T
**** * * * * * *
4232750 TGAAAAACAT-AAATTGAACAGAAATTGAAAATACCTC-A-ACGTGTCTTGAGGCTCAATTCATC
65 T----TTTTTGAAA---AACAGAAATTAAAAATACCTCGACGCGTGAC-CGAGCCTCAACTCATC
*
4232812 TCTCGCAATATGAGTTGA---TTTTTTGAAAAGCAG
122 TCTCGCAATATGAGTT-ATTTTTTTTTGAAAAACAG
* * * **
4232845 AAATTGAAAATACCTCAATGTGT--CTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGA----
1 AAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * * * * * *
4232904 ATTTTG-AAAACAGAAATTGAAATTACCTC-A-ACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
66 TTTTTGAAAAACAGAAATTAAAAATACCTCGACGCGTGAC-CGAGCCTCAACTCATCTCTCGCAA
4232966 TATGAGTT
130 TATGAGTT
4232974 GAATTTTTGA
Statistics
Matches: 1544, Mismatches: 182, Indels: 252
0.78 0.09 0.13
Matches are distributed among these distances:
142 14 0.01
143 113 0.07
144 46 0.03
145 86 0.06
146 59 0.04
147 3 0.00
148 1 0.00
149 4 0.00
150 38 0.02
151 59 0.04
152 55 0.04
153 39 0.03
154 180 0.12
155 133 0.09
156 104 0.07
157 30 0.02
158 69 0.04
159 2 0.00
161 14 0.01
162 108 0.07
163 33 0.02
164 82 0.05
165 102 0.07
166 8 0.01
167 11 0.01
168 67 0.04
169 19 0.01
170 50 0.03
171 2 0.00
172 1 0.00
175 12 0.01
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (156 bp):
AAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTTTGAAAAACAGAAATTAAAAATACCTCGACGCGTGACCGAGCCTCAACTCATCTCTCGCAAT
ATGAGTTATTTTTTTTTGAAAAACAG
Found at i:4231537 original size:162 final size:163
Alignment explanation
Indices: 4231228--4231866 Score: 724
Period size: 162 Copynumber: 3.8 Consensus size: 163
4231218 CGACGCGTGA
* **
4231228 CCGAGCCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAATA
1 CCGAGACTCAACTCATCTCTCGCAATATGAGTTGA----TTTTTGACGAACAGAAATTGAAAATA
* * *
4231293 TCTC-GTGTGTGA-CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAATA
62 CCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCAC-ATATGAGTTGATTTTTTTGAAAAAT-
*
4231356 GAAATTAAAAATAGAATTTGAAAAGACCTCGGCATGTGGT
124 GAAATTAAAAATAGAATTTGAAAAGACCTCGGCATGTGGC
*
4231396 CCGAGACTCAACTCATCTCTCGCAATATGAGTTGATTTTTGACGAACAG-AA-TGACAATACCTC
1 CCGAGACTCAACTCATCTCTCGCAATATGAGTTGATTTTTGACGAACAGAAATTGAAAATACCTC
* *
4231459 AGCATATGAGCCAAGGCTCAACTCACCTCTCACATATGAGTTGATTTTGTTTGAAAAATGAAATT
66 AGCGTGTGAGCCAAGGCTCAACTCACCTCTCACATATGAGTTGATTTT-TTTGAAAAATGAAATT
*
4231524 AAAAACAGAATTTGAAAAGACCTCGGCATGTGGC
130 AAAAATAGAATTTGAAAAGACCTCGGCATGTGGC
*
4231558 CCGAGACTCAACTCACCTCT-GACAATATGAGTTGATTTTTGACGAACAGAAATTGAAAATACCT
1 CCGAGACTCAACTCATCTCTCG-CAATATGAGTTGATTTTTGACGAACAGAAATTGAAAATACCT
*
4231622 CAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCA-ATATGAGTTGATTTTTTTTGACGAACA-G
65 CAGCGTGTGAGCCAAGGCTCAACTCACCTC-T-CACATATGAGTTGA-TTTTTTTGA--AAAATG
* * * * *
4231685 AAATTGAAAATAGATTTTGAAAATA-CTCGACATGTGAC
125 AAATTAAAAATAGAATTTGAAAAGACCTCGGCATGTGGC
* * ** * *
4231723 CCGAGGCTCAACTCA-CATCTCGCAATGTGAGTTGATTTTTTTTGAAAAATATAAATTGAAAAAA
1 CCGAGACTCAACTCATC-TCTCGCAATATGAGTTGA---TTTTTGACGAACAGAAATTG--AAAA
* * * *
4231787 TACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGA
60 TACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTCAC-ATATGAGTTGATTTTTTTGAAA-A
*
4231851 CA-GAAATTGAAAATAG
122 -ATGAAATTAAAAATAG
4231867 CTCAGCGCGT
Statistics
Matches: 415, Mismatches: 33, Indels: 45
0.84 0.07 0.09
Matches are distributed among these distances:
161 1 0.00
162 109 0.26
163 39 0.09
164 53 0.13
165 57 0.14
166 29 0.07
167 5 0.01
168 51 0.12
169 25 0.06
170 44 0.11
171 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (163 bp):
CCGAGACTCAACTCATCTCTCGCAATATGAGTTGATTTTTGACGAACAGAAATTGAAAATACCTC
AGCGTGTGAGCCAAGGCTCAACTCACCTCTCACATATGAGTTGATTTTTTTGAAAAATGAAATTA
AAAATAGAATTTGAAAAGACCTCGGCATGTGGC
Found at i:4231650 original size:75 final size:75
Alignment explanation
Indices: 4231526--4231919 Score: 278
Period size: 90 Copynumber: 5.0 Consensus size: 75
4231516 ATGAAATTAA
* * * * * *
4231526 AAACAGAATTTGAAAAGACCTCGGCATGTG-GCCCGAGACTCAACTCACCTCTGACAATATGAGT
1 AAACAGAAATTGAAAATACCTCAGCGTGTGAG-CCAAGGCTCAACTCACCTCTG-CAATATGAGT
4231590 TGA-TTTTTGAC
64 TGATTTTTTGAC
*
4231601 GAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTT
1 AAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTC-TGCAATATGAGTT
4231666 GATTTTTTTTGAC
65 GA--TTTTTTGAC
* * * * * *
4231679 GAACAGAAATTGAAAATAGATTTTGAAAATACTC-GACATGTGACCCGAGGCTCAACTCACATCT
1 AAACAGAAATTG--AA-A-A---T----A-CCTCAG-CGTGTGAGCCAAGGCTCAACTCACCTCT
* *
4231743 CGCAATGTGAGTTGATTTTTTTTGAA
53 -GCAATATGAGTTGA--TTTTTTGAC
* * * * *
4231769 AAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAACAGAAATTG--AAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCT-GCAATATGA
4231833 GTTGATTTTTTTGA-
62 GTTGA-TTTTTTGAC
* * *
4231847 AAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACT-ACCTCTCACAATATGAGT
1 AA-ACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCT-GCAATATGAGT
*
4231911 CGATTTTTT
64 TGATTTTTT
4231920 TTAAAGGCAA
Statistics
Matches: 262, Mismatches: 34, Indels: 46
0.77 0.10 0.13
Matches are distributed among these distances:
75 61 0.23
76 24 0.09
77 25 0.10
78 22 0.08
79 17 0.06
80 39 0.15
81 4 0.02
82 1 0.00
85 2 0.01
88 1 0.00
89 4 0.02
90 62 0.24
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (75 bp):
AAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTGCAATATGAGTTG
ATTTTTTGAC
Found at i:4231954 original size:89 final size:89
Alignment explanation
Indices: 4231843--4232009 Score: 212
Period size: 89 Copynumber: 1.9 Consensus size: 89
4231833 GTTGATTTTT
*
4231843 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACT-ACCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATA-CTCAGCGCGTGA-CCTAAGGCTCAACTCACCTCTCACAATA
*
4231906 TGAGTCGATTTTTTTTAAAGGCAAAA
64 CGAGTCGATTTTTTTTAAAGGCAAAA
* * * * * *
4231932 TTGAAAAATAGAAATTGAAAATACTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACG
1 TTGAAAAACAGAAATTGAAAATACTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCACAATACG
* *
4231997 AGTTGGTTTTTTT
66 AGTCGATTTTTTT
4232010 GACAACAGAA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
87 2 0.03
88 20 0.30
89 44 0.67
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (89 bp):
TTGAAAAACAGAAATTGAAAATACTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCACAATACG
AGTCGATTTTTTTTAAAGGCAAAA
Found at i:4231968 original size:245 final size:240
Alignment explanation
Indices: 4231564--4232560 Score: 706
Period size: 227 Copynumber: 4.3 Consensus size: 240
4231554 TGGCCCGAGA
*
4231564 CTCAACTCACCTCTGACAATATGAGTTGA--TTTTTGACGAACAGAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTG-CAATATGAGTTGATTTTTTTGAAGAACAGAAATTGAAAATACCTCAGCG
* ** * * *
4231627 TGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTGACGAACAGAAATTGA
65 CGTGAGCCAAGGCTCAACTCACCTCTCACAATATGAGTCGATTTTTTTTAAAGAACAGAAATTGA
** **
4231692 AAATAGATTTTGAAAATACTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTG
130 AAATAGAAATTGAAAATACTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATACGAGTTG
* * * * *
4231757 ATTTTTTTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAG
195 -GTTTTTTTG-AAAACAGAAATTG--AAAATACCTCAGCGTGT--CCTGAAG
*
4231809 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AGACAGAAATTGAAAATAGCTCAGC
1 CTCAACTCACCTCT-GCAATATGAGTTGATTTTTTTGAAGA-ACAGAAATTGAAAATACCTCAGC
*
4231873 GCGTGAGCCAAGGCTCAACT-ACCTCTCACAATATGAGTCGATTTTTTTTAAAG-GCA-AAATTG
64 GCGTGAGCCAAGGCTCAACTCACCTCTCACAATATGAGTCGATTTTTTTTAAAGAACAGAAATTG
* * * * *
4231935 AAAAATAGAAATTGAAAATACTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
129 -AAAATAGAAATTGAAAATACTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATACGAGT
* * *
4232000 TGGTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
193 TGGTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAAG
* *
4232048 CTTAACTCA-CTCTTG-AATATGAGTTGATTTTTTTTTTTGAATGATA-A-AAATTG-AAATAAC
1 CTCAACTCACCTC-TGCAATATGAGTTGA----TTTTTTTGAA-GA-ACAGAAATTGAAAATACC
* * ** ** * *
4232108 TCA--GCATG-TCTTGAGGCTCAACTCATTTCTCTCAATATGAGTTGATTTTTTTT---------
59 TCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCACAATATGAGTCGATTTTTTTTAAAGAACAG
* * ** **
4232161 --TTTGAAAACAGAAATTGAAAATACCTC-AGCATGT--CTTGAGGCTCAACTCATTTCTCGCAA
123 AAATTGAAAATAGAAATTGAAAATA-CTCGA-CATGTGACCCGAGGCTCAACTCACATCTCGCAA
* ** * * * *
4232221 TATGAGTT-GAATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGG
186 TACGAGTTGGTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAAG
** * * *
4232275 CTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAA-AACAGAAATTGAAATTACCTCA--A
1 CTCAACTCACCTCT-GCAATATGAGTTGATTTTTTTGAAGAACAGAAATTGAAAATACCTCAGCG
* ** ** * * * *
4232335 CGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---TTTTTGAA-AACATAAATTG
65 CGTGAGC-CAAGGCTCAACTCACCTCTCACAATATGAGTCGATTTTTTTTAAAGAACAGAAATTG
* * ** * *
4232395 --AACAGAAATTGAAAATACCTCAACATGT--CTTGAGGCTCAACTCACCTCTC-CAATATGA-T
129 AAAATAGAAATTGAAAATA-CTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATACGAGT
* * ** * *
4232454 TTGATTTTTTGAAAAGCAGAAATTGAAAATACCTCAATGTGT-TTGAGG
193 TGGTTTTTTTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAAG
** * * *
4232502 CTCAACTCATTTATCGCAATATGAGTTGA--ATTTTGAA-AACAGAAATTGAAATTACCTCA
1 CTCAACTCACCTCT-GCAATATGAGTTGATTTTTTTGAAGAACAGAAATTGAAAATACCTCA
4232561 ACGTGTCTTG
Statistics
Matches: 651, Mismatches: 66, Indels: 88
0.81 0.08 0.11
Matches are distributed among these distances:
220 6 0.01
221 2 0.00
222 6 0.01
223 54 0.08
226 2 0.00
227 134 0.21
228 102 0.16
229 31 0.05
230 13 0.02
237 13 0.02
238 18 0.03
239 39 0.06
240 9 0.01
241 31 0.05
242 1 0.00
243 12 0.02
244 14 0.02
245 86 0.13
246 30 0.05
247 48 0.07
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (240 bp):
CTCAACTCACCTCTGCAATATGAGTTGATTTTTTTGAAGAACAGAAATTGAAAATACCTCAGCGC
GTGAGCCAAGGCTCAACTCACCTCTCACAATATGAGTCGATTTTTTTTAAAGAACAGAAATTGAA
AATAGAAATTGAAAATACTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATACGAGTTGG
TTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAAG
Found at i:4232255 original size:227 final size:221
Alignment explanation
Indices: 4231936--4232975 Score: 1205
Period size: 227 Copynumber: 4.6 Consensus size: 221
4231926 GCAAAATTGA
* ** * *** *
4231936 AAAATAGAAATTGAAAATA-CTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGT
** * * * * * *
4232000 TGGTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTTAACTCA-CTCTTG-
64 T-GAATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
* * * * * *
4232063 AATATGAGTTGATTTTTTTTTTTGAATGATAAAAATTGAAA-TAACTCAGCATGTCTTGAGGCTC
128 AATATGAGTTGA---TTTATTTTGAA-AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
* *
4232127 AACTCATTTCTCTCAATATGAGTTGATTTTTTTTTTTG
189 AACTCATTTCTCGCAATATGAGTTGA-----ATTTTTG
* *
4232165 AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
4232230 AATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
66 AATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
*
4232295 ATGAGTTGA---ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCAT
131 ATGAGTTGATTTATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCAT
4232357 TTCTCGCAATATGAGTTG-ATTTTTG
196 TTCTCGCAATATGAGTTGAATTTTTG
* **
4232382 AAAACATAAATTGAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTC-C
1 --------AA---AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
* * * *
4232446 AATATGATTTGATTTTTTGAAAAGCAGAAATTGAAAATACCTCAATGTGT-TTGAGGCTCAACTC
55 AATATGAGTTGAATTTTTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTC
* *
4232510 ATTTATCGCAATATGAGTTGA---ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGA
119 ATTTCTCGCAATATGAGTTGATTTATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGA
4232572 GGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTG
184 GGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTG
* *
4232610 -AAACAGAAATTG-AATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
*
4232673 AA-TTTTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
66 AATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
*** * * *
4232737 ATGAGTTGATTCTTGAAAAACATAAATTGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGC
131 ATGAGTTGA-T-TT----ATTTTGAA---AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGC
* * *
4232802 TCAATTCATCTCTCGCAATATGAGTTGATTTTTTG
187 TCAACTCATTTCTCGCAATATGAGTTGAATTTTTG
* *
4232837 AAAAGCAGAAATTGAAAATACCTCAATGTGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
4232902 GAA-TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
65 GAATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
4232966 TATGAGTTGA
130 TATGAGTTGA
4232976 ATTTTTGAAA
Statistics
Matches: 721, Mismatches: 56, Indels: 67
0.85 0.07 0.08
Matches are distributed among these distances:
214 23 0.03
215 77 0.11
216 23 0.03
217 6 0.01
219 1 0.00
222 11 0.02
223 51 0.07
224 4 0.01
225 2 0.00
227 243 0.34
228 114 0.16
229 39 0.05
230 127 0.18
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (221 bp):
AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
AATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
ATGAGTTGATTTATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCAT
TTCTCGCAATATGAGTTGAATTTTTG
Found at i:4232348 original size:72 final size:72
Alignment explanation
Indices: 4231969--4232992 Score: 1184
Period size: 72 Copynumber: 13.7 Consensus size: 72
4231959 GCGTGTGACC
*** * ** *
4231969 TGAGGCTCAACTCGCCTCTCGCAATACGAGTTGGTTTTTTTGACAACAGAAATTGAAATTACCTC
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTT-G-AATTTTGAAAACAGAAATTGAAATTACCTC
* *
4232034 AGCGTGTCC
64 AACGTGTCT
* * * * * * *
4232043 TGAGGCTTAACTCA-CTCTTG-AATATGAGTTGATTTTTTTTTTTGAATGATAAAAATTGAAA-T
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA------ATTTTGAA-AACAGAAATTGAAATT
* * *
4232105 AACTCAGCATGTCT
59 ACCTCAACGTGTCT
* * *
4232119 TGAGGCTCAACTCATTTCTCTCAATATGAGTTGATTTTTTTTTTTGAAAACAGAAATTGAAAATA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA------ATTTTGAAAACAGAAATTGAAATTA
* *
4232184 CCTCAGCATGTCT
60 CCTCAACGTGTCT
4232197 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTTGAAAACAGAAATTGAAATTACCTCA
4232262 ACGTGTCT
65 ACGTGTCT
4232270 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
4232335 CGTGTCT
66 CGTGTCT
*
4232342 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAACAGAAATTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG--------AA---AACAGAAATTGA
* *
4232407 AAATACCTCAACATGTCT
55 AATTACCTCAACGTGTCT
** * * *
4232425 TGAGGCTCAACTCACCTCTC-CAATATGATTTGATTTTTTGAAAAGCAGAAATTGAAAATACCTC
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAA-CAGAAATTGAAATTACCTC
*
4232489 AATGTGT-T
64 AACGTGTCT
*
4232497 TGAGGCTCAACTCATTTATCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
4232562 CGTGTCT
66 CGTGTCT
4232569 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTG-AAACAGAAATTG-AATTACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTTGAAAACAGAAATTGAAATTACCTCA
4232632 ACGTGTCT
65 ACGTGTCT
* *
4232640 TGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
4232705 CGTGTCT
66 CGTGTCT
4232712 TGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTCTTGAAAAACATAAATTGAACAGAAATT
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT-TTG---------AA---AACAGAAATT
*
4232776 GAAAATACCTCAACGTGTCT
53 GAAATTACCTCAACGTGTCT
* * * *
4232796 TGAGGCTCAATTCATCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAATACCTC
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAA-CAGAAATTGAAATTACCTC
*
4232861 AATGTGTCT
64 AACGTGTCT
*
4232870 TAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
4232935 CGTGTCT
66 CGTGTCT
4232942 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTG-AAACAGAAAT
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTTGAAAACAGAAAT
4232993 AAAAGCATCA
Statistics
Matches: 847, Mismatches: 57, Indels: 94
0.85 0.06 0.09
Matches are distributed among these distances:
70 5 0.01
71 91 0.11
72 284 0.34
73 131 0.15
74 70 0.08
75 2 0.00
76 34 0.04
77 25 0.03
78 73 0.09
80 2 0.00
81 2 0.00
82 12 0.01
83 52 0.06
84 59 0.07
85 3 0.00
86 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
CGTGTCT
Found at i:4232562 original size:299 final size:295
Alignment explanation
Indices: 4231969--4232985 Score: 1292
Period size: 299 Copynumber: 3.4 Consensus size: 295
4231959 GCGTGTGACC
*** * ** *
4231969 TGAGGCTCAACTCGCCTCTCGCAATACGAGTTGGTTTTTTTGACAACAGAAATTGAAATTACCTC
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTT-G-AATTTTGAAAACAGAAATTGAAATTACCTC
* * * * * **** *
4232034 AGCGTGTCCTGAGGCTTAACTCA-CTCTTG-AATATGAGTTGATTTTTTTTTTTGAATGATAA-A
64 AACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTGAAATAAATGA-AAGA
* * *
4232096 AATTG-AAATAACTCAGCATGTCTTGAGGCTCAACTCATTTCTCTCAATATGAGTTGATTTTTTT
127 AATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-----TT
*
4232160 TTTTGAAAA-CAGAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTCGCAATA
187 TTTTGAAAAGCAGAAATTGAAAATACCTCA--ATGTGTTTGAGGCTCAACTCATTTCTCGCAATA
4232223 TGAGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCT
250 TGAGTTGAA-TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCT
4232270 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
4232335 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAACAG
66 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG--AA-ATAAA-TGAA-AG
** *
4232400 AAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTC-CAATATGATTTGATTTTTT
126 AAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
*
4232464 GAAAAGCAGAAATTGAAAATACCTCAATGTGTTTGAGGCTCAACTCATTTATCGCAATATGAGTT
191 GAAAAGCAGAAATTGAAAATACCTCAATGTGTTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
4232529 GAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCT
256 GAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCT
4232569 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTG-AAACAGAAATTG-AATTACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTTGAAAACAGAAATTGAAATTACCTCA
* *
4232632 ACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTG--A-AAAT---AGAAAT
65 ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAATAAATGAAAGAAAT
* * *
4232691 TGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTCTTGAAA
130 TGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTG---
* * *
4232755 AACATAAATTGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAATTCATCTCTCGCAA
192 ---A-AAA--G--CAGAAATTGAAAATACCTCAATGTGT-TTGAGGCTCAACTCATTTCTCGCAA
* * *
4232820 TATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCT
248 TATGAGTTGA-ATTTTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCT
*
4232870 TAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
4232935 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTGAAA
66 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTTGAAA
4232986 CAGAAATAAA
Statistics
Matches: 642, Mismatches: 42, Indels: 60
0.86 0.06 0.08
Matches are distributed among these distances:
287 48 0.07
288 12 0.02
291 1 0.00
292 3 0.00
293 2 0.00
294 3 0.00
296 1 0.00
298 81 0.13
299 167 0.26
300 75 0.12
301 132 0.21
302 50 0.08
303 10 0.02
304 4 0.01
305 19 0.03
306 34 0.05
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (295 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAATAAATGAAAGAAATT
GAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAA
GCAGAAATTGAAAATACCTCAATGTGTTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
TTGAAAACAGAAATTGAAATTACCTCAACGTGTCT
Found at i:4232939 original size:230 final size:228
Alignment explanation
Indices: 4232539--4232985 Score: 770
Period size: 230 Copynumber: 2.0 Consensus size: 228
4232529 GAATTTTGAA
* *
4232539 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAA
* *
4232604 TTTTTGAAACAGAAATTGAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
66 TTTTTGAAACAGAAATTGAAATACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCACAATATGA
*
4232669 GTTGAATTTTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
131 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
4232734 AATATGAGTTG-ATTCTTGAAAAACATAAATTG
196 AATATGAGTTGAATTCTTGAAAAACATAAATTG
* *
4232766 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAATTCATCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAA
* *
4232831 TTTTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTAAGGCTCAACTCATTTCTCGCAATA
66 TTTTTG-AAA-CAGAAATTG-AAATACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCACAATA
4232896 TGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCT
128 TGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCT
*
4232961 CGCAATATGAGTTGAATTTTTGAAA
193 CGCAATATGAGTTGAATTCTTGAAA
4232986 CAGAAATAAA
Statistics
Matches: 206, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
227 67 0.33
228 3 0.01
229 9 0.04
230 118 0.57
231 9 0.04
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Consensus pattern (228 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAA
TTTTTGAAACAGAAATTGAAATACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCACAATATGA
GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
AATATGAGTTGAATTCTTGAAAAACATAAATTG
Found at i:4233844 original size:38 final size:39
Alignment explanation
Indices: 4233802--4233877 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
4233792 TGTGTTAATC
4233802 AAGATGCCC-TTTTCGGGTTTTCACCTTGATTTTTTTTT
1 AAGATGCCCTTTTTCGGGTTTTCACCTTGATTTTTTTTT
*
4233840 AAGATGCCCTTTTTCGGGTTTTCATCTTGATTTTTTTT
1 AAGATGCCCTTTTTCGGGTTTTCACCTTGATTTTTTTT
4233878 AGGCATAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 9 0.25
39 27 0.75
ACGTcount: A:0.13, C:0.17, G:0.16, T:0.54
Consensus pattern (39 bp):
AAGATGCCCTTTTTCGGGTTTTCACCTTGATTTTTTTTT
Found at i:4239460 original size:32 final size:32
Alignment explanation
Indices: 4239424--4239520 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
4239414 TGTATGCATT
4239424 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
4239456 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
4239488 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
4239520 T
1 T
4239521 GATAAGCATT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:4240156 original size:26 final size:26
Alignment explanation
Indices: 4240127--4240179 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4240117 TTTACAGTTT
4240127 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
4240153 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
4240179 T
1 T
4240180 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:4241801 original size:12 final size:12
Alignment explanation
Indices: 4241784--4241814 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
4241774 ACTCGGGGAA
4241784 GAGGCCGTGGTC
1 GAGGCCGTGGTC
4241796 GAGGCCGTGGTC
1 GAGGCCGTGGTC
4241808 GAGGCCG
1 GAGGCCG
4241815 AGGTAGTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:4246682 original size:32 final size:32
Alignment explanation
Indices: 4246646--4246742 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
4246636 TGTATGCATT
4246646 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
4246678 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
4246710 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
4246742 T
1 T
4246743 GATAAGCATT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:4252377 original size:19 final size:19
Alignment explanation
Indices: 4252332--4252379 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
4252322 TACAACAATA
*
4252332 ATATAAAATAATGATATGT
1 ATATAATATAATGATATGT
* *
4252351 ACAAAATATATAT-ATATGT
1 ATATAATATA-ATGATATGT
4252370 ATATAATATA
1 ATATAATATA
4252380 GTTATAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 21 0.91
20 2 0.09
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.38
Consensus pattern (19 bp):
ATATAATATAATGATATGT
Found at i:4252597 original size:12 final size:12
Alignment explanation
Indices: 4252582--4252611 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
4252572 AAAATTTAAA
4252582 TTTTTTTTTATT
1 TTTTTTTTTATT
*
4252594 TTTTATTTTATT
1 TTTTTTTTTATT
4252606 TTTTTT
1 TTTTTT
4252612 AAGACCAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTTTTTATT
Found at i:4252624 original size:17 final size:16
Alignment explanation
Indices: 4252603--4252637 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
4252593 TTTTTATTTT
4252603 ATTTTT-TTTAAGACCA
1 ATTTTTATTT-AGACCA
4252619 ATTTTTATTTAGACCA
1 ATTTTTATTTAGACCA
4252635 ATT
1 ATT
4252638 ACAAATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.51
Consensus pattern (16 bp):
ATTTTTATTTAGACCA
Found at i:4253221 original size:15 final size:15
Alignment explanation
Indices: 4253184--4253221 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
4253174 TTTTTGGGTT
4253184 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
4253199 ATTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
4253214 TTTTTTTT
1 TTTTTTTT
4253222 CTTTTTTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.13, C:0.05, G:0.16, T:0.66
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:4263094 original size:3 final size:3
Alignment explanation
Indices: 4263086--4263129 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
4263076 CAAAAATTAG
4263086 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4263130 CGTTTCATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:4263344 original size:3 final size:3
Alignment explanation
Indices: 4263336--4263398 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
4263326 CAAAGTTTAG
4263336 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4263384 ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
4263399 GTTACCTTCT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:4270330 original size:177 final size:177
Alignment explanation
Indices: 4270034--4270524 Score: 693
Period size: 177 Copynumber: 2.8 Consensus size: 177
4270024 GAATTCACAA
* *
4270034 CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAAATTGTAA-TCTTATCTTCCTAAGGTAGC
1 CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATTG-AAGTCTTATCTTCCTGAGGTAGC
*
4270098 AAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAATATGG
65 AAGGAAGCAGACTAAAGATTGAAAATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAATATGG
*
4270163 TGAATCTTATCTTCCCGAGGTAGCAGGAGAGCAGATTTTAGCCACCAG
130 CGAATCTTATCTTCCCGAGGTAGCAGGAGAGCAGATTTTAGCCACCAG
*
4270211 CCTTATCTCTCTAAGGTAGCAAGAGAGCTA-GTTGAAGATTGAAGTCTTATCTTCTTGAGGTAGC
1 CCTTATCTCTCTAAGGTAGCAAGAGAGC-AGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGC
* * **
4270275 AAGGAAGCAGACTAAAGATTGAATATCTTATCTCCCTAAGCAGTATTGGAGTAGATTGAATATGG
65 AAGGAAGCAGACTAAAGATTGAAAATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAATATGG
* * * * *
4270340 CGATTCTTATCTTCCCGTGGTAGTAGGGGAGCAGATTTTTGCCACCAG
130 CGAATCTTATCTTCCCGAGGTAGCAGGAGAGCAGATTTTAGCCACCAG
* * * * * *
4270388 CCTTATCTCTCTGAGTTAGCAAGAGAGCAGGTTAAAGATTGTAGTATTATTTTCCTGAGGTAGCA
1 CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCA
* * * * *
4270453 AGGAAGCAGACTGAAGATT-ACAAATCTTATCTCCCTATGC-GATAGTGGAGTAGATCGAAGACG
66 AGGAAGCAGACTAAAGATTGA-AAATCTTATCTCCCTAAGCAG-TAGTGGAGTAGATCAAATATG
4270516 GCGAATCTT
129 GCGAATCTT
4270525 GTCTCTCTAA
Statistics
Matches: 281, Mismatches: 28, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
176 5 0.02
177 275 0.98
178 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (177 bp):
CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCA
AGGAAGCAGACTAAAGATTGAAAATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAATATGGC
GAATCTTATCTTCCCGAGGTAGCAGGAGAGCAGATTTTAGCCACCAG
Found at i:4270548 original size:44 final size:43
Alignment explanation
Indices: 4270475--4271066 Score: 374
Period size: 44 Copynumber: 13.7 Consensus size: 43
4270465 GAAGATTACA
* *
4270475 AATCTTATCTCCCTATGC-GATAGTGGAGTAGATCGAAGACGGC
1 AATCTTATCTCCCTAAGCAG-TAGTGGAGTAGATCGAAGACGAC
* * * * * **
4270518 GAATCTTGTCTCTCTAAGCAGTAGTAGAGTAG-GCTAAAGATTAC
1 -AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-GAAGACGAC
* * * * **
4270562 AGATCTTATCTCCCTAAACAATAGTGAAGCAGATCGAAGACGGTG
1 A-ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGAC-GAC
* * * ** *
4270607 AATCTTATTTCCCTAAGCAATAGTAGAGTAGATTTAAG-CCAC
1 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGAC
* * * * **
4270649 CATCCTATCTCCCTAAGTAGTAGTGGAGTAG-GCTGAAGATTAC
1 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-GAAGACGAC
* *
4270692 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGC
1 A-ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGAC
* * * * ** *
4270736 GAATCTTGTCTCTCTAAGCAGCAGTGGAGAAGATTTAAG-CCAC
1 -AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGAC
* * * * **
4270779 CATCCTATCTCCCTAAGTAGTAGTGGAGTAG-GCTGAAGATTAC
1 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-GAAGACGAC
* *
4270822 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGC
1 A-ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGAC
* * ** *
4270866 GAATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTTAAG-CCAC
1 -AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGAC
* * * * * **
4270909 CATCCTATTTCCCTAAGCATTAGTGGAGTAG-GCTGAAGATTAC
1 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-GAAGACGAC
* * *
4270952 AAATCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGATGGC
1 -AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGAC
* * * * ** *
4270996 GAATTTTGTCTCTCTAAGCAGTAGTGGAGCAGATTTAAG-CCAC
1 -AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGAC
* * *
4271039 CATCCTATCTCCCTAAGCAGTGGTGGAG
1 AATCTTATCTCCCTAAGCAGTAGTGGAG
4271067 CAGGTTGAAA
Statistics
Matches: 409, Mismatches: 120, Indels: 40
0.72 0.21 0.07
Matches are distributed among these distances:
42 105 0.26
43 13 0.03
44 283 0.69
45 8 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGAC
Found at i:4270698 original size:86 final size:87
Alignment explanation
Indices: 4270608--4270991 Score: 323
Period size: 86 Copynumber: 4.4 Consensus size: 87
4270598 AAGACGGTGA
* * * * *
4270608 ATCTTATTTCCCTAAGCAATAGTAGAGTAGATTTAAG-CCAC-CATCCTATCTCCCTAAGTAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACCACACATCCTATCTCCCTAAGCAGTA
4270671 GTGGAGTAGGCTGAAGATTACAG
66 GTGGAGTAGGCTGAAGATTAC-G
* * ** * * * *
4270694 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA-ATCTTGTCTCTCTAAGCAGC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACCAC-ACATCCTATCTCCCTAAGCAGT
* ** * ** *
4270758 AGTGGAGAAGATTTAAG-CCACC
65 AGTGGAGTAGGCTGAAGATTACG
* * ** ** * *
4270780 ATCCTATCTCCCTAAGTAGTAGTGGAGTAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACCACACATCCTATCTCCCTAAGCAGTA
* **
4270845 GTGGAGTA-GATCGAAGATGGCG
66 GTGGAGTAGGCT-GAAGATTACG
* * * * *
4270867 AATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTTAAG-CCAC-CATCCTATTTCCCTAAGCATT
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACCACACATCCTATCTCCCTAAGCAGT
*
4270930 AGTGGAGTAGGCTGAAGATTACAA
65 AGTGGAGTAGGCTGAAGATTAC-G
* *
4270954 ATCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGA
4270992 TGGCGAATTT
Statistics
Matches: 226, Mismatches: 62, Indels: 19
0.74 0.20 0.06
Matches are distributed among these distances:
85 2 0.01
86 157 0.69
87 9 0.04
88 58 0.26
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (87 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACCACACATCCTATCTCCCTAAGCAGTA
GTGGAGTAGGCTGAAGATTACG
Found at i:4271094 original size:130 final size:130
Alignment explanation
Indices: 4270526--4271075 Score: 830
Period size: 130 Copynumber: 4.2 Consensus size: 130
4270516 GCGAATCTTG
* * * * * *
4270526 TCTCTCTAAGCAGTAGTAGAGTAGGCTAAAGATTACAGATCTTATCTCCCTAAACAATAGTGAAG
1 TCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAG
* * * * * * *
4270591 CAGATCGAAGACGGTGAATCTTATTTCCCTAAGCAATAGTAGAGTAGATTTAAGCCACCATCCTA
66 TAGATCGAAGACGGCGAATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATCCTA
*
4270656 TCTCCCTAAGTAGTAGTGGAGTAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAG
1 TCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAG
* * * *
4270721 CAGATCGAAGACGGCGAATCTTGTCTCTCTAAGCAGCAGTGGAGAAGATTTAAGCCACCATCCTA
66 TAGATCGAAGACGGCGAATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATCCTA
*
4270786 TCTCCCTAAGTAGTAGTGGAGTAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAG
1 TCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAG
*
4270851 TAGATCGAAGATGGCGAATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATCCTA
66 TAGATCGAAGACGGCGAATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATCCTA
* * * *
4270916 TTTCCCTAAGCATTAGTGGAGTAGGCTGAAGATTACAAATCTTATCTCCCTAAGTAGTAGTGGAG
1 TCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAG
* * *
4270981 TAGATCGAAGATGGCGAATTTTGTCTCTCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATCCTA
66 TAGATCGAAGACGGCGAATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATCCTA
* * *
4271046 TCTCCCTAAGCAGTGGTGGAGCAGGTTGAA
1 TCTCCCTAAGCAGTAGTGGAGTAGGCTGAA
4271076 ATCAACAATT
Statistics
Matches: 388, Mismatches: 32, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 388 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (130 bp):
TCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAG
TAGATCGAAGACGGCGAATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATCCTA
Found at i:4271166 original size:44 final size:44
Alignment explanation
Indices: 4271116--4271259 Score: 112
Period size: 44 Copynumber: 3.3 Consensus size: 44
4271106 GTGGAGTTAA
*
4271116 TCGAAGCTACAAATCTCTTCTCCCTGAAATGACATTAGAGCTGC
1 TCGAAGCCACAAATCTCTTCTCCCTGAAATGACATTAGAGCTGC
* * * *** ** *
4271160 TCGAAGCCACAATTCT-TATCTCCTTGAAGTTTTAGGAGAG-TAGA
1 TCGAAGCCACAAATCTCT-TCTCCCTGAAATGACATTAGAGCT-GC
* * * * *
4271204 TCGAAGCTACAAATCTCTTCTCCCTAAAAGGACATTGGAGCGGC
1 TCGAAGCCACAAATCTCTTCTCCCTGAAATGACATTAGAGCTGC
*
4271248 TCGTAGCCACAA
1 TCGAAGCCACAA
4271260 TTCTTATTTC
Statistics
Matches: 70, Mismatches: 26, Indels: 8
0.67 0.25 0.08
Matches are distributed among these distances:
43 2 0.03
44 67 0.96
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (44 bp):
TCGAAGCCACAAATCTCTTCTCCCTGAAATGACATTAGAGCTGC
Found at i:4271180 original size:88 final size:88
Alignment explanation
Indices: 4271080--4271523 Score: 588
Period size: 88 Copynumber: 5.0 Consensus size: 88
4271070 GTTGAAATCA
* *
4271080 ACAATTCTTATCTCCTTGAAGTTTTAGTGGAGTTA-ATCGAAGCTACAAATCTCTTCTCCCTGAA
1 ACAATTCTTATCTCCTTGAAGTTTCAGCGGAG-TAGATCGAAGCTACAAATCTCTTCTCCCTGAA
* * *
4271144 ATGACATTAGAGCTGCTCGAAGCC
65 ATGGCATTGGAGCGGCTCGAAGCC
*
4271168 ACAATTCTTATCTCCTTGAAGTTTTAG-GAGAGTAGATCGAAGCTACAAATCTCTTCTCCCT-AA
1 ACAATTCTTATCTCCTTGAAGTTTCAGCG-GAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAA
* *
4271231 AAGGACATTGGAGCGGCTCGTAGCC
65 ATGG-CATTGGAGCGGCTCGAAGCC
* * * * * *
4271256 ACAATTCTTATTTCCTTGAAGTTCCAGCGTAATAGATCGAAGCTACAAATCTCTTCTTCCTAAAA
1 ACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
4271321 TGGCATTGGAGTGGCTCGAAGCC
66 TGGCATTGGAGCGGCTCGAAGCC
* * * * * **
4271344 ACAATTGTTATCTCCTTAAAGTTCCAGCGGAGTAGATCGAAGTTACAAATCTCTTTTCTTTGAAA
1 ACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* * *
4271409 TGGTATTAGAGCGGCTCGAAGTC
66 TGGCATTGGAGCGGCTCGAAGCC
*
4271432 ACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATTGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
4271497 TGGTATTGGAGCGGCTCAAAGCC
66 TGGCATTGGAGCGGCTCGAAGCC
4271520 ACAA
1 ACAA
4271524 ATCACAAACC
Statistics
Matches: 311, Mismatches: 40, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
87 7 0.02
88 298 0.96
89 6 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (88 bp):
ACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
TGGCATTGGAGCGGCTCGAAGCC
Found at i:4271635 original size:21 final size:21
Alignment explanation
Indices: 4271586--4271625 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
4271576 TCTTATCTCC
4271586 CTGAAGTTGCAGTGGAGCAGA
1 CTGAAGTTGCAGTGGAGCAGA
*
4271607 CTAAAGTTGCAGTGGAGCA
1 CTGAAGTTGCAGTGGAGCA
4271626 AGTTGAAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.35, T:0.20
Consensus pattern (21 bp):
CTGAAGTTGCAGTGGAGCAGA
Found at i:4271651 original size:65 final size:65
Alignment explanation
Indices: 4271542--4271671 Score: 233
Period size: 65 Copynumber: 2.0 Consensus size: 65
4271532 CCTTATCTCC
* * *
4271542 CTAAGGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 CTAAAGTTGCAGTGGAGCAAGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
4271607 CTAAAGTTGCAGTGGAGCAAGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
1 CTAAAGTTGCAGTGGAGCAAGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
4271672 TTGAAGATAG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (65 bp):
CTAAAGTTGCAGTGGAGCAAGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
Found at i:4271655 original size:44 final size:44
Alignment explanation
Indices: 4271607--4271756 Score: 198
Period size: 44 Copynumber: 3.4 Consensus size: 44
4271597 GTGGAGCAGA
4271607 CTAAAGTTGCAGTGGAGCAAGTTGAAGTTAC-AAGTCTTATCTCC
1 CTAAAGTTGCAGTGGAGCAAGTTGAAGTTACGAA-TCTTATCTCC
*
4271651 CTAAAGTTGCAGTGGAGC-AGATTGAAGATAGCGAATCTTATCTCC
1 CTAAAGTTGCAGTGGAGCAAG-TTGAAGTTA-CGAATCTTATCTCC
* * *
4271696 CTGAAGTTGCAGTAGAGCAGGTTGAAGTTACGAATCTTATCTCC
1 CTAAAGTTGCAGTGGAGCAAGTTGAAGTTACGAATCTTATCTCC
*
4271740 CTGAAA-TTGTAGTGGAG
1 CT-AAAGTTGCAGTGGAG
4271757 TAGATTGAAG
Statistics
Matches: 93, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
43 2 0.02
44 51 0.55
45 37 0.40
46 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (44 bp):
CTAAAGTTGCAGTGGAGCAAGTTGAAGTTACGAATCTTATCTCC
Found at i:4273054 original size:13 final size:14
Alignment explanation
Indices: 4273031--4273060 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
4273021 AATCCAATCC
4273031 TTTTTTACCTTTAA
1 TTTTTTACCTTTAA
4273045 TTTTTT-CCTTTAA
1 TTTTTTACCTTTAA
4273058 TTT
1 TTT
4273061 CGACTTTGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTTTACCTTTAA
Found at i:4273637 original size:3 final size:3
Alignment explanation
Indices: 4273629--4273670 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
4273619 AAAAAATTAG
4273629 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4273671 GTAGCGACGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:4276535 original size:19 final size:20
Alignment explanation
Indices: 4276511--4276551 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
4276501 AAACAAGTGT
*
4276511 AAAAATGGCAG-AGCAAAAA
1 AAAAATGCCAGCAGCAAAAA
*
4276530 AAAAATTCCAGCAGCAAAAA
1 AAAAATGCCAGCAGCAAAAA
4276550 AA
1 AA
4276552 TTTCCAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.63, C:0.15, G:0.15, T:0.07
Consensus pattern (20 bp):
AAAAATGCCAGCAGCAAAAA
Found at i:4276560 original size:29 final size:30
Alignment explanation
Indices: 4276528--4276673 Score: 158
Period size: 29 Copynumber: 4.8 Consensus size: 30
4276518 GCAGAGCAAA
*
4276528 AAAAAAATTCCAGCAGCAAAAAAATTTCCAA
1 AAAAAAATTCCAGCAGCAAAAAAATTT-CAC
4276559 AAAAAAATTCCAGCAGCAAAAAAATTTCTAGC
1 AAAAAAATTCCAGCAGCAAAAAAATTTC-A-C
4276591 AAAAAAATT-C--CAGCAAAAAAATTTCCAGC
1 AAAAAAATTCCAGCAGCAAAAAAATTT-CA-C
*
4276620 AAAAAAATTCCAGC--CAAAAAAATTCCAGC
1 AAAAAAATTCCAGCAGCAAAAAAATTTCA-C
**
4276649 AAAGAAAATTCCAGCAAAAAAAAAA
1 AAA-AAAATTCCAGCAGCAAAAAAA
4276674 CCAAAAAAAG
Statistics
Matches: 103, Mismatches: 3, Indels: 17
0.84 0.02 0.14
Matches are distributed among these distances:
29 33 0.32
30 24 0.23
31 29 0.28
32 17 0.17
ACGTcount: A:0.58, C:0.19, G:0.08, T:0.15
Consensus pattern (30 bp):
AAAAAAATTCCAGCAGCAAAAAAATTTCAC
Found at i:4276620 original size:44 final size:43
Alignment explanation
Indices: 4276541--4276670 Score: 165
Period size: 44 Copynumber: 2.9 Consensus size: 43
4276531 AAAATTCCAG
* *
4276541 CAGCAAAAAAATTTCCA-AAAAAAAATTCCAGCAGCAAAAAAATTTC
1 CAGCAAAAAAA-TTCCAGCAAAAAAATTTC--CAGCAAAAAAA-TTC
*
4276587 TAGCAAAAAAATTCCAGCAAAAAAATTTCCAGCAAAAAAATTC
1 CAGCAAAAAAATTCCAGCAAAAAAATTTCCAGCAAAAAAATTC
4276630 CAGCCAAAAAAATTCCAGCAAAGAAAA-TTCCAGCAAAAAAA
1 CAG-CAAAAAAATTCCAGCAAA-AAAATTTCCAGCAAAAAAA
4276671 AAACCAAAAA
Statistics
Matches: 77, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
43 5 0.06
44 43 0.56
45 9 0.12
46 20 0.26
ACGTcount: A:0.57, C:0.20, G:0.08, T:0.15
Consensus pattern (43 bp):
CAGCAAAAAAATTCCAGCAAAAAAATTTCCAGCAAAAAAATTC
Found at i:4276671 original size:15 final size:15
Alignment explanation
Indices: 4276527--4276671 Score: 172
Period size: 15 Copynumber: 9.5 Consensus size: 15
4276517 GGCAGAGCAA
4276527 AAAAAAAATTCCAGC
1 AAAAAAAATTCCAGC
4276542 AGCAAAAAAATTTCCA--
1 A--AAAAAAA-TTCCAGC
4276558 AAAAAAAATTCCAGC
1 AAAAAAAATTCCAGC
*
4276573 AGCAAAAAAATTTCTAGC
1 A--AAAAAAA-TTCCAGC
4276591 -AAAAAAATTCCAGC
1 AAAAAAAATTCCAGC
*
4276605 AAAAAAATTTCCAGC
1 AAAAAAAATTCCAGC
4276620 -AAAAAAATTCCAGC
1 AAAAAAAATTCCAGC
*
4276634 CAAAAAAATTCCAGC
1 AAAAAAAATTCCAGC
*
4276649 AAAGAAAATTCCAGC
1 AAAAAAAATTCCAGC
4276664 AAAAAAAA
1 AAAAAAAA
4276672 AACCAAAAAA
Statistics
Matches: 113, Mismatches: 7, Indels: 20
0.81 0.05 0.14
Matches are distributed among these distances:
13 5 0.04
14 26 0.23
15 56 0.50
16 1 0.01
17 14 0.12
18 11 0.10
ACGTcount: A:0.58, C:0.19, G:0.08, T:0.15
Consensus pattern (15 bp):
AAAAAAAATTCCAGC
Found at i:4277168 original size:31 final size:34
Alignment explanation
Indices: 4277100--4277172 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 34
4277090 GGGTGATATG
* *
4277100 TTAAGTTAGTGGGTTGGGTTGGTTGTGTTGGGTTTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGTT--GATTA
*
4277136 TTAAGTTAGTGAGTTGGGTTGGTT-TGTATTATTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGT-TGATTA
4277170 TTA
1 TTA
4277173 TTATTTTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 6 0.18
35 3 0.09
36 24 0.73
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.49
Consensus pattern (34 bp):
TTAAGTTAGTGAGTTGGGTTGGTTGTGTTGATTA
Found at i:4277861 original size:17 final size:17
Alignment explanation
Indices: 4277817--4277874 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 17
4277807 AGGTAATTTG
* * *
4277817 TCAAAATTCTAGTGTTG
1 TCAAAATTTTCGTGTTT
*
4277834 T-AAACTTTTCGTGTTT
1 TCAAAATTTTCGTGTTT
4277850 TCAAAATTTTCGTGTTT
1 TCAAAATTTTCGTGTTT
*
4277867 TAAAAATT
1 TCAAAATT
4277875 CTCATTTTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
16 12 0.35
17 22 0.65
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.48
Consensus pattern (17 bp):
TCAAAATTTTCGTGTTT
Found at i:4281530 original size:12 final size:12
Alignment explanation
Indices: 4281510--4281565 Score: 60
Period size: 12 Copynumber: 4.4 Consensus size: 12
4281500 GACAGTCATG
*
4281510 AAAAGAAAAAGA
1 AAAAAAAAAAGA
4281522 AAAAAAAAAAGA
1 AAAAAAAAAAGA
4281534 AAAAAAAGGATAAGA
1 AAAAAAA--A-AAGA
4281549 AAAAAACAAAA-A
1 AAAAAA-AAAAGA
4281561 AAAAA
1 AAAAA
4281566 GAAATCAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
12 24 0.62
13 2 0.05
14 2 0.05
15 10 0.26
16 1 0.03
ACGTcount: A:0.86, C:0.02, G:0.11, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAAGA
Found at i:4284175 original size:217 final size:217
Alignment explanation
Indices: 4283758--4284567 Score: 1480
Period size: 217 Copynumber: 3.7 Consensus size: 217
4283748 TGATGCTTTT
4283758 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
4283822 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
65 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
* *
4283887 GTTGAGGT-TTTTCAATTTCTGCTTTCCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
130 ATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
4283951 CAAGACACGTTGAGGTAATTTCA
195 CAAGACACGTTGAGGTAATTTCA
* *
4283974 ATTTCTATTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
4284039 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAAAGAGTTGAGCCTCAAGACACA
66 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA
*
4284104 TTGAGGTATTTTCAATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
131 TTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
4284169 AAGACACGTTGAGGTAATTTCA
196 AAGACACGTTGAGGTAATTTCA
*
4284191 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
4284256 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACA
66 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA
4284321 TTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
131 TTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
4284386 AAGACACGTTGAGGTAATTTCA
196 AAGACACGTTGAGGTAATTTCA
4284408 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
4284473 AATTTCAATTTATGTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACA
66 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA
**
4284538 TTGAGGTATTTTCAAAATCTGCTTTTCAAA
131 TTGAGGTATTTTCAATTTCTGCTTTTCAAA
4284568 TTAAGTTTCA
Statistics
Matches: 572, Mismatches: 20, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
216 127 0.22
217 445 0.78
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (217 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA
TTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
AAGACACGTTGAGGTAATTTCA
Found at i:4284276 original size:289 final size:288
Alignment explanation
Indices: 4283758--4284567 Score: 1390
Period size: 289 Copynumber: 2.8 Consensus size: 288
4283748 TGATGCTTTT
4283758 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
4283822 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
65 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
* *
4283887 GTTGAGGT-TTTTCAATTTCTGCTTTCCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
130 GTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
* *
4283951 CAAGACACGTTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGTGAGAAATGAGT
194 CAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGT
*
4284016 TGAGCCTCAAGACACGTTGAGGTAATTTCA
259 TGAGCCTCAAGACACATTGAGGTAATTTCA
* * *
4284046 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAAAGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
4284111 ATTTTCAATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 AATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
4284176 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
130 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
*
4284241 AAGACACGTTAAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT
195 AAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT
* *
4284306 GAGCCTCAAGATACATTGAGGTATTTTCA
260 GAGCCTCAAGACACATTGAGGTAATTTCA
4284335 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
4284400 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
65 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
* *
4284465 GTTGAGGTAATTTCAATTTATGTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTC
130 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
* * **
4284530 AAGACACATTGAGGTATTTTCAAAATCTGCTTTTCAAA
195 AAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAAA
4284568 TTAAGTTTCA
Statistics
Matches: 492, Mismatches: 25, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
288 69 0.14
289 336 0.68
290 87 0.18
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (288 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
AGCCTCAAGACACATTGAGGTAATTTCA
Found at i:4284569 original size:72 final size:72
Alignment explanation
Indices: 4283758--4284567 Score: 1390
Period size: 72 Copynumber: 11.2 Consensus size: 72
4283748 TGATGCTTTT
4283758 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
4283822 TAATTTCA
65 TAATTTCA
4283830 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
4283895 -TTTTCA
66 AATTTCA
*
4283901 ATTTCTGCTTTCCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
4283966 TAATTTCA
65 TAATTTCA
* *
4283974 ATTTCTATTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
4284039 AATTTCA
66 AATTTCA
* * *
4284046 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAAAGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
4284111 ATTTTCA
66 AATTTCA
*
4284118 ATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
4284183 TAATTTCA
65 TAATTTCA
*
4284191 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
4284256 AATTTCA
66 AATTTCA
* *
4284263 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
4284328 ATTTTCA
66 AATTTCA
4284335 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
4284400 TAATTTCA
65 TAATTTCA
4284408 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
4284473 AATTTCA
66 AATTTCA
* * *
4284480 ATTTATGTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
4284545 ATTTTCA
66 AATTTCA
**
4284552 AAATCTGCTTTTCAAA
1 ATTTCTG-TTTTCAAA
4284568 TTAAGTTTCA
Statistics
Matches: 701, Mismatches: 31, Indels: 11
0.94 0.04 0.01
Matches are distributed among these distances:
71 12 0.02
72 530 0.76
73 159 0.23
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (72 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
AATTTCA
Found at i:4284668 original size:14 final size:13
Alignment explanation
Indices: 4284635--4284664 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
4284625 TGCTGAGGTA
*
4284635 TTTTCAATTTTTG
1 TTTTCAATTTATG
4284648 TTTTCAATTTATG
1 TTTTCAATTTATG
4284661 TTTT
1 TTTT
4284665 TCAAAAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.70
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:4284681 original size:89 final size:87
Alignment explanation
Indices: 4284475--4284704 Score: 286
Period size: 89 Copynumber: 2.6 Consensus size: 87
4284465 GTTGAGGTAA
* * **
4284475 TTTCAATTTATGTTTTC-AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACAT
1 TTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACAT
4284539 TGAGGTATTTTCAAAATCTGCT
66 TGAGGTATTTTCAAAATCTGCT
* * * * * *
4284561 TTTCAAATTAAG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGTCTCAGGTCACA
1 TTTCAATTTATGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACA
** *
4284625 TGCTGAGGTATTTTCAATTTTTG-T
65 T--TGAGGTATTTTCAAAATCTGCT
4284649 TTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTCAATTTATG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4284705 TTTAATTCCT
Statistics
Matches: 121, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
85 4 0.03
86 10 0.08
87 39 0.32
88 11 0.09
89 53 0.44
90 4 0.03
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.37
Consensus pattern (87 bp):
TTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACAT
TGAGGTATTTTCAAAATCTGCT
Found at i:4284742 original size:54 final size:54
Alignment explanation
Indices: 4284659--4285028 Score: 641
Period size: 54 Copynumber: 6.8 Consensus size: 54
4284649 TTTCAATTTA
4284659 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
1 TGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
* *
4284714 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTC
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
* * * *
4284768 TGGTTTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTC
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
* *
4284822 TGTTTTTCAAACATCAACTCATATTGCGAGAGGTGGGTTGAGCCTTTTAATTCC
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
*
4284876 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTCC
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
*
4284930 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTC
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
4284984 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4285029 CAGGTCACAT
Statistics
Matches: 302, Mismatches: 13, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
54 294 0.97
55 8 0.03
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (54 bp):
TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
Found at i:4285197 original size:87 final size:86
Alignment explanation
Indices: 4284973--4285202 Score: 241
Period size: 89 Copynumber: 2.6 Consensus size: 86
4284963 TGAGTTGAGC
*
4284973 CTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
1 CTTTTAA-TTCTGTTTTT-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACA
*
4285038 TGTCGAGGTATTTTCAAAATCTG
64 TGTCGAGCTATTTTCAAAATCTG
** ** * * *
4285061 CTTTTCAAATTAAGTTTCAAAAAGATCAACTCACATTGCGAGAAGTGAGTTGAGCCTTA-G-CTC
1 CTTTT--AATTCTGTTTTTAAAA-ATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCAC
**
4285124 ATGTGCTGAGCTATTTTCAATTTCTG
63 ATGT-C-GAGCTATTTTCAAAATCTG
* *
4285150 -TTTTAATGTCTGTTTTTAAAGAATCAATTCATATTGCGAGAAATGAGTTGAGC
1 CTTTTAAT-TCTGTTTTTAAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGC
4285203 TCAAGATCAC
Statistics
Matches: 117, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
86 3 0.03
87 42 0.36
88 16 0.14
89 54 0.46
90 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (86 bp):
CTTTTAATTCTGTTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACATG
TCGAGCTATTTTCAAAATCTG
Found at i:4285646 original size:25 final size:25
Alignment explanation
Indices: 4285612--4285659 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
4285602 AAAAGTCTTT
4285612 ACTCTATTCTCGTTACACGACAACA
1 ACTCTATTCTCGTTACACGACAACA
* *
4285637 ACTCTGTTCTCGTTATACGACAA
1 ACTCTATTCTCGTTACACGACAA
4285660 TGAGTAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ACTCTATTCTCGTTACACGACAACA
Found at i:4286235 original size:16 final size:16
Alignment explanation
Indices: 4286070--4286235 Score: 200
Period size: 15 Copynumber: 10.5 Consensus size: 16
4286060 GGGGGAGCAA
*
4286070 AAAAAAAATTCCAGCAGC
1 AAAAAAAATTTC--CAGC
*
4286088 AAAAAAAATTTCCA-A
1 AAAAAAAATTTCCAGC
*
4286103 AAAAAAAAATTCCAGC
1 AAAAAAAATTTCCAGC
4286119 AGCAAAAAAATTTCCAGC
1 A--AAAAAAATTTCCAGC
*
4286137 AAAAAAAAATTCCAGC
1 AAAAAAAATTTCCAGC
4286153 -AAAAAAATTTCCAGC
1 AAAAAAAATTTCCAGC
4286168 -AAAAAAA-TTCCAGC
1 AAAAAAAATTTCCAGC
*
4286182 CAAAAAAA-TTCCAGC
1 AAAAAAAATTTCCAGC
*
4286197 AAAGAAAA-TTCCAGC
1 AAAAAAAATTTCCAGC
4286212 AAAAAAAATTTCCAGC
1 AAAAAAAATTTCCAGC
4286228 AAAAAAAA
1 AAAAAAAA
4286236 ACCAAAAAAA
Statistics
Matches: 133, Mismatches: 10, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
14 7 0.05
15 68 0.51
16 32 0.24
18 26 0.20
ACGTcount: A:0.59, C:0.19, G:0.07, T:0.14
Consensus pattern (16 bp):
AAAAAAAATTTCCAGC
Found at i:4286246 original size:30 final size:30
Alignment explanation
Indices: 4286087--4286246 Score: 139
Period size: 31 Copynumber: 5.2 Consensus size: 30
4286077 ATTCCAGCAG
* *
4286087 CAAAAAAAATTTCCA-AAAAAAAAAATTCCAG
1 CAAAAAAAATTTCCAGCAAAAAAAAA--CCAA
*
4286118 CAGCAAAAAAATTTCCAGCAAAAAAAAATTCCAG
1 CA--AAAAAAATTTCCAGCAAAAAAAAA--CCAA
** *
4286152 C-AAAAAAATTTCCAGCAAAAAAATTCCAG
1 CAAAAAAAATTTCCAGCAAAAAAAAACCAA
* ** *
4286181 CCAAAAAAA-TTCCAGCAAAGAAAATTCCAG
1 CAAAAAAAATTTCCAGCAAA-AAAAAACCAA
4286211 CAAAAAAAATTTCCAGCAAAAAAAAACCAA
1 CAAAAAAAATTTCCAGCAAAAAAAAACCAA
4286241 -AAAAAA
1 CAAAAAA
4286247 GGAACATTCA
Statistics
Matches: 116, Mismatches: 7, Indels: 14
0.85 0.05 0.10
Matches are distributed among these distances:
29 21 0.18
30 32 0.28
31 34 0.29
33 13 0.11
34 16 0.14
ACGTcount: A:0.61, C:0.19, G:0.06, T:0.14
Consensus pattern (30 bp):
CAAAAAAAATTTCCAGCAAAAAAAAACCAA
Found at i:4287420 original size:17 final size:17
Alignment explanation
Indices: 4287376--4287433 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 17
4287366 AGGTAATTTG
* * *
4287376 TCAAAATTCTAGTGTTG
1 TCAAAATTTTCGTGTTT
*
4287393 T-AAACTTTTCGTGTTT
1 TCAAAATTTTCGTGTTT
4287409 TCAAAATTTTCGTGTTT
1 TCAAAATTTTCGTGTTT
*
4287426 TAAAAATT
1 TCAAAATT
4287434 CTCATTTTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
16 12 0.35
17 22 0.65
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.48
Consensus pattern (17 bp):
TCAAAATTTTCGTGTTT
Found at i:4288270 original size:3 final size:3
Alignment explanation
Indices: 4288262--4288342 Score: 135
Period size: 3 Copynumber: 27.0 Consensus size: 3
4288252 CAAAGTTTAG
* * *
4288262 ATT ATT ATT ATT ATT ATC ATT ATT ATC ATT ATC ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4288310 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4288343 GTTACCTTCT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:4289883 original size:28 final size:30
Alignment explanation
Indices: 4289845--4289901 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
4289835 ATTAGATATG
* *
4289845 ATAATCATTTAGAT-TTATTTTTTATTAAA
1 ATAATCATTTAGATACTATTTTATATTAAA
4289874 ATAAT-ATTTAGATACTATTTTATATTAA
1 ATAATCATTTAGATACTATTTTATATTAA
4289902 TTTATATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (30 bp):
ATAATCATTTAGATACTATTTTATATTAAA
Found at i:4289919 original size:8 final size:10
Alignment explanation
Indices: 4289892--4289916 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
4289882 TAGATACTAT
4289892 TTTATATTAA
1 TTTATATTAA
4289902 TTTATATTAA
1 TTTATATTAA
4289912 TTTAT
1 TTTAT
4289917 TAAATTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TTTATATTAA
Found at i:4294003 original size:21 final size:21
Alignment explanation
Indices: 4293977--4294017 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4293967 AGACGAGCGA
* *
4293977 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
4293998 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
4294018 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:4302591 original size:30 final size:30
Alignment explanation
Indices: 4302557--4302613 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
4302547 CAGTTTGACC
*
4302557 ATTAGTTCTTGACTCAACTCATTTGATTGG
1 ATTAGTTCTCGACTCAACTCATTTGATTGG
*
4302587 ATTAGTTCTCGATTCAACTCATTTGAT
1 ATTAGTTCTCGACTCAACTCATTTGAT
4302614 CGGTTCAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.44
Consensus pattern (30 bp):
ATTAGTTCTCGACTCAACTCATTTGATTGG
Found at i:4303099 original size:30 final size:30
Alignment explanation
Indices: 4303065--4303123 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
4303055 TTCTTAGTCC
4303065 AATCAATCCAACCAACCAACCAATCAATCT
1 AATCAATCCAACCAACCAACCAATCAATCT
4303095 AATCAATCCAACCAACCAACCAATCAATC
1 AATCAATCCAACCAACCAACCAATCAATC
4303124 CTATTTCAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.15
Consensus pattern (30 bp):
AATCAATCCAACCAACCAACCAATCAATCT
Found at i:4307200 original size:20 final size:21
Alignment explanation
Indices: 4307153--4307200 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
4307143 CAAAAGGAGT
4307153 AAATTATGTAAAGTGGATACC
1 AAATTATGTAAAGTGGATACC
4307174 AAATTATGTAAAGTGGATACC
1 AAATTATGTAAAGTGGATACC
4307195 -AATTAT
1 AAATTAT
4307201 TCTAACCTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31
Consensus pattern (21 bp):
AAATTATGTAAAGTGGATACC
Found at i:4308839 original size:30 final size:30
Alignment explanation
Indices: 4308805--4308861 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
4308795 CAGTTTGACC
*
4308805 ATTAGTTCTTGACTCAACTCATTTGATTGG
1 ATTAGTTCTCGACTCAACTCATTTGATTGG
*
4308835 ATTAGTTCTCGATTCAACTCATTTGAT
1 ATTAGTTCTCGACTCAACTCATTTGAT
4308862 CGGTTCAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.44
Consensus pattern (30 bp):
ATTAGTTCTCGACTCAACTCATTTGATTGG
Found at i:4309346 original size:30 final size:30
Alignment explanation
Indices: 4309312--4309370 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
4309302 TTCTTAGTCC
4309312 AATCAATCCAACCAACCAACCAATCAATCT
1 AATCAATCCAACCAACCAACCAATCAATCT
4309342 AATCAATCCAACCAACCAACCAATCAATC
1 AATCAATCCAACCAACCAACCAATCAATC
4309371 CTATTTCAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.15
Consensus pattern (30 bp):
AATCAATCCAACCAACCAACCAATCAATCT
Found at i:4313447 original size:20 final size:21
Alignment explanation
Indices: 4313400--4313447 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
4313390 CAAAAGGAGT
4313400 AAATTATGTAAAGTGGATACC
1 AAATTATGTAAAGTGGATACC
4313421 AAATTATGTAAAGTGGATACC
1 AAATTATGTAAAGTGGATACC
4313442 -AATTAT
1 AAATTAT
4313448 TCTAACCTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31
Consensus pattern (21 bp):
AAATTATGTAAAGTGGATACC
Found at i:4317102 original size:15 final size:15
Alignment explanation
Indices: 4317082--4317111 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
4317072 TTTAATCCTT
*
4317082 TATAAATTATAAAAA
1 TATAAACTATAAAAA
4317097 TATAAACTATAAAAA
1 TATAAACTATAAAAA
4317112 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:4320665 original size:20 final size:20
Alignment explanation
Indices: 4320607--4320666 Score: 57
Period size: 23 Copynumber: 2.8 Consensus size: 20
4320597 TAATAACAAC
* *
4320607 AATAAAATAGAAGACAATAAT
1 AATAATATAGAA-AAAATAAT
*
4320628 AATAATATATTAATAAAAATAAT
1 AATAATATA--GA-AAAAATAAT
4320651 AATAATATAGAAAAAA
1 AATAATATAGAAAAAA
4320667 ATATTATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
20 5 0.16
21 9 0.28
23 17 0.53
24 1 0.03
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (20 bp):
AATAATATAGAAAAAATAAT
Found at i:4320876 original size:23 final size:22
Alignment explanation
Indices: 4320850--4320929 Score: 67
Period size: 23 Copynumber: 3.5 Consensus size: 22
4320840 AATATGTTTC
4320850 TAATAATAATAAATAAATAATGG
1 TAATAATAATAAATAAATAAT-G
*
4320873 TAATAA-ATATATATAAAATAATG
1 TAATAATA-ATAAAT-AAATAATG
* *
4320896 TAACAGTAATAAAATAAAT-AT-
1 TAATAATAAT-AAATAAATAATG
4320917 TATATAATAATAA
1 TA-ATAATAATAA
4320930 CAATATTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
21 4 0.09
22 9 0.20
23 22 0.48
24 11 0.24
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (22 bp):
TAATAATAATAAATAAATAATG
Found at i:4322492 original size:14 final size:13
Alignment explanation
Indices: 4322474--4322508 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
4322464 AACTTAACCC
4322474 AAAAAAAAAACAA
1 AAAAAAAAAACAA
*
4322487 AGAAAAAAAAAGAA
1 A-AAAAAAAAACAA
4322501 AAAAAAAA
1 AAAAAAAA
4322509 CTTACCCCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.91, C:0.03, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAACAA
Found at i:4322498 original size:10 final size:10
Alignment explanation
Indices: 4322474--4322507 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
4322464 AACTTAACCC
4322474 AAAAA-AAAA
1 AAAAAGAAAA
*
4322483 ACAAAGAAAA
1 AAAAAGAAAA
4322493 AAAAAGAAAA
1 AAAAAGAAAA
4322503 AAAAA
1 AAAAA
4322508 ACTTACCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.91, C:0.03, G:0.06, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:4322520 original size:16 final size:16
Alignment explanation
Indices: 4322501--4322540 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
4322491 AAAAAAAGAA
*
4322501 AAAAAAAACTTACCCC
1 AAAAAAAACTAACCCC
*
4322517 AAAAAAACCTAACCCC
1 AAAAAAAACTAACCCC
4322533 AAAAAAAA
1 AAAAAAAA
4322541 AAAGAAGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.65, C:0.28, G:0.00, T:0.07
Consensus pattern (16 bp):
AAAAAAAACTAACCCC
Found at i:4332360 original size:71 final size:71
Alignment explanation
Indices: 4332239--4332372 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
4332229 GTTTTCCAAG
* * *
4332239 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
4332304 GTTTCA
66 GTTTCA
* * *
4332310 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
4332373 CTGCTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:4332475 original size:159 final size:160
Alignment explanation
Indices: 4332148--4332529 Score: 669
Period size: 159 Copynumber: 2.4 Consensus size: 160
4332138 TGTTTTTTTC
4332148 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
*
4332213 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
*
4332278 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTCATGTTT
4332308 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
* *
4332373 CTGCTTTTTAGTTCATG-TTTCCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
*
4332437 GACACGTTGGGGTAATTTCAATTCATGTTT
131 GACACGTTGAGGTAATTTCAATTCATGTTT
* * * *
4332467 CAAAAATCAACTCATATTGCGATAAGTGAGTTGAACCT-TGGGCACGCTGAGGTAATTTCAATT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
4332530 CCCATTAAAT
Statistics
Matches: 213, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
158 23 0.11
159 110 0.52
160 80 0.38
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (160 bp):
CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
CTACTTTTTAATTCATGTTTTCCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTAATTTCAATTCATGTTT
Found at i:4332815 original size:54 final size:52
Alignment explanation
Indices: 4332687--4332829 Score: 147
Period size: 47 Copynumber: 2.8 Consensus size: 52
4332677 TTTTTTGTTT
*
4332687 TTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTTAATTTTCG
1 TTTTCAAAAATCAAC-CATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTCG
* *
4332739 TTTTTC-GAAATCTA-C---TTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTACG
1 -TTTTCAAAAATCAACCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTT-T-CG
**
4332789 -TTTCAAAAATCAACCCATATTGCGAGAAATGAGTTGAGCCT
1 TTTTCAAAAATCAA-CCATATTGCGAGAGGTGAGTTGAGCCT
4332830 CAGTTCACTT
Statistics
Matches: 74, Mismatches: 7, Indels: 17
0.76 0.07 0.17
Matches are distributed among these distances:
47 21 0.28
48 12 0.16
49 7 0.09
50 3 0.04
51 1 0.01
52 5 0.07
53 5 0.07
54 20 0.27
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (52 bp):
TTTTCAAAAATCAACCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTCG
Found at i:4333533 original size:17 final size:17
Alignment explanation
Indices: 4333513--4333549 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
4333503 AACCTAACCC
*
4333513 AAAAAAAAA-ACAAAGA
1 AAAAAAAAAGAAAAAGA
4333529 AAAAAAAAAGAAAAAGA
1 AAAAAAAAAGAAAAAGA
4333546 AAAA
1 AAAA
4333550 CTTACCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAGAAAAAGA
Found at i:4333548 original size:11 final size:11
Alignment explanation
Indices: 4333516--4333549 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
4333506 CTAACCCAAA
4333516 AAAAAAACAAAG
1 AAAAAAA-AAAG
4333528 AAAAAAAAAAG
1 AAAAAAAAAAG
4333539 AAAAAGAAAAA
1 AAAAA-AAAAA
4333550 CTTACCCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:4339080 original size:3 final size:3
Alignment explanation
Indices: 4339072--4339100 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
4339062 ATTTTATTTT
4339072 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
4339101 TTTCTATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:4344752 original size:54 final size:54
Alignment explanation
Indices: 4344692--4344797 Score: 194
Period size: 54 Copynumber: 2.0 Consensus size: 54
4344682 TGAAGGACAC
*
4344692 AACAACATAGATGACGAAGATGTGAACAATCCCATTAAGCACGGTAATGGAATG
1 AACAACATAGATGACGAAGATGTGAACAATCCCATTAAGCACAGTAATGGAATG
*
4344746 AACAACATAGATGACGAAGATGTGAACAATCCCATTAAGCTCAGTAATGGAA
1 AACAACATAGATGACGAAGATGTGAACAATCCCATTAAGCACAGTAATGGAA
4344798 CGAATGAGCC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.43, C:0.17, G:0.21, T:0.19
Consensus pattern (54 bp):
AACAACATAGATGACGAAGATGTGAACAATCCCATTAAGCACAGTAATGGAATG
Found at i:4350294 original size:48 final size:48
Alignment explanation
Indices: 4350238--4350333 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
4350228 CATTTCACTG
4350238 AATTGTTGATCAAAGGTTAAAGGCACATTAAACATGTAACAAATTTGT
1 AATTGTTGATCAAAGGTTAAAGGCACATTAAACATGTAACAAATTTGT
4350286 AATTGTTGATCAAAGGTTAAAGGCACATTAAACATGTAACAAATTTGT
1 AATTGTTGATCAAAGGTTAAAGGCACATTAAACATGTAACAAATTTGT
4350334 GATATTCTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (48 bp):
AATTGTTGATCAAAGGTTAAAGGCACATTAAACATGTAACAAATTTGT
Found at i:4357677 original size:6 final size:6
Alignment explanation
Indices: 4357668--4357706 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
4357658 ACCCGCATCC
* *
4357668 GCAACA GCAACA GCACCA GCACCA GCAACA GCAACA GCA
1 GCAACA GCAACA GCAACA GCAACA GCAACA GCAACA GCA
4357707 CCATGTGCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.44, C:0.38, G:0.18, T:0.00
Consensus pattern (6 bp):
GCAACA
Found at i:4357695 original size:18 final size:18
Alignment explanation
Indices: 4357672--4357709 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
4357662 GCATCCGCAA
*
4357672 CAGCAACAGCACCAGCAC
1 CAGCAACAGCAACAGCAC
4357690 CAGCAACAGCAACAGCAC
1 CAGCAACAGCAACAGCAC
4357708 CA
1 CA
4357710 TGTGCCAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.42, G:0.16, T:0.00
Consensus pattern (18 bp):
CAGCAACAGCAACAGCAC
Done.