Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 156 of 378
Found at i:45117738 original size:23 final size:23
Alignment explanation
Indices: 45117708--45117753 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
45117698 AAATACATAC
45117708 GAATTTAACTGTTTTTCTATTGT
1 GAATTTAACTGTTTTTCTATTGT
45117731 GAATTTAACTGTTTTTCTATTGT
1 GAATTTAACTGTTTTTCTATTGT
45117754 TTTTGTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.09, G:0.13, T:0.57
Consensus pattern (23 bp):
GAATTTAACTGTTTTTCTATTGT
Found at i:45120483 original size:16 final size:16
Alignment explanation
Indices: 45120444--45120496 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
45120434 ATAATGAATT
45120444 AAAAAGAAAC--AAAG
1 AAAAAGAAACAGAAAG
*
45120458 CAAAATGAAACAGAAAG
1 -AAAAAGAAACAGAAAG
*
45120475 AAAAAGAAAAAGAAAG
1 AAAAAGAAACAGAAAG
45120491 AAAAAG
1 AAAAAG
45120497 GAGAAAGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.27
16 20 0.61
17 4 0.12
ACGTcount: A:0.75, C:0.06, G:0.17, T:0.02
Consensus pattern (16 bp):
AAAAAGAAACAGAAAG
Found at i:45120507 original size:16 final size:16
Alignment explanation
Indices: 45120454--45120514 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
45120444 AAAAAGAAAC
* *
45120454 AAAGCAAAATGAAACAG
1 AAAG-AAAAAGAAAAAG
45120471 AAAGAAAAAGAAAAAG
1 AAAGAAAAAGAAAAAG
*
45120487 AAAGAAAAAGGAGAAAG
1 AAAGAAAAA-GAAAAAG
*
45120504 -AAGAAGAAGAA
1 AAAGAAAAAGAA
45120515 GGGCTTTAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
15 2 0.05
16 26 0.68
17 10 0.26
ACGTcount: A:0.72, C:0.03, G:0.23, T:0.02
Consensus pattern (16 bp):
AAAGAAAAAGAAAAAG
Found at i:45120514 original size:13 final size:13
Alignment explanation
Indices: 45120472--45120514 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
45120462 ATGAAACAGA
*
45120472 AAGAAA-AAGAAA
1 AAGAAAGAAGAAG
*
45120484 AAGAAAGAAAAAG
1 AAGAAAGAAGAAG
*
45120497 GAGAAAGAAGAAG
1 AAGAAAGAAGAAG
45120510 AAGAA
1 AAGAA
45120515 GGGCTTTAGG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 6 0.24
13 19 0.76
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
AAGAAAGAAGAAG
Found at i:45129255 original size:41 final size:41
Alignment explanation
Indices: 45129183--45129372 Score: 166
Period size: 41 Copynumber: 4.6 Consensus size: 41
45129173 ACAACCTACT
* * * * * * *
45129183 TGATATAATACACTGTCACGAAGCATGCTAGGCTCAAAGCT
1 TGATATAACACACCGACACGAAGCCTACTAGGCACAAAGCC
* * *
45129224 TGATATAACACACCGACATGACGCCTACTAGGCACAATGCC
1 TGATATAACACACCGACACGAAGCCTACTAGGCACAAAGCC
* * * * *
45129265 TGATATAATACACCGGCACGAAGCCTGCTAGGCATAGAGCC
1 TGATATAACACACCGACACGAAGCCTACTAGGCACAAAGCC
* * * * *
45129306 TGATATAATACACAGGCACGAAGCCTTCTAGGTACAAAGCC
1 TGATATAACACACCGACACGAAGCCTACTAGGCACAAAGCC
* *
45129347 AGATATAATACACC-ATCACGAAGCCT
1 TGATATAACACACCGA-CACGAAGCCT
45129373 GTTGGACTCA
Statistics
Matches: 122, Mismatches: 26, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
41 122 1.00
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (41 bp):
TGATATAACACACCGACACGAAGCCTACTAGGCACAAAGCC
Found at i:45129337 original size:82 final size:82
Alignment explanation
Indices: 45129183--45129373 Score: 231
Period size: 82 Copynumber: 2.3 Consensus size: 82
45129173 ACAACCTACT
* * * * * *
45129183 TGATATAATACACTGTCACGAAGCATGCTAGGCTCAAAGCTTGATATAACACACCGACATGACGC
1 TGATATAATACACCGTCACGAAGCCTGCTAGGCTCAAAGCCTGATATAACACACAGACACGAAGC
*
45129248 CTACTAGGCACAATGCC
66 CTACTAGGCACAAAGCC
* * * *
45129265 TGATATAATACACCGGCACGAAGCCTGCTAGGCAT-AGAGCCTGATATAATACACAGGCACGAAG
1 TGATATAATACACCGTCACGAAGCCTGCTAGGC-TCAAAGCCTGATATAACACACAGACACGAAG
* *
45129329 CCTTCTAGGTACAAAGCC
65 CCTACTAGGCACAAAGCC
* *
45129347 AGATATAATACACCATCACGAAGCCTG
1 TGATATAATACACCGTCACGAAGCCTG
45129374 TTGGACTCAA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
82 91 0.99
83 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (82 bp):
TGATATAATACACCGTCACGAAGCCTGCTAGGCTCAAAGCCTGATATAACACACAGACACGAAGC
CTACTAGGCACAAAGCC
Found at i:45131317 original size:13 final size:12
Alignment explanation
Indices: 45131299--45131336 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
45131289 GTTTTTCTAC
45131299 TTTTTTTTTATT
1 TTTTTTTTTATT
45131311 TTATTTTTTTATT
1 TT-TTTTTTTATT
*
45131324 TTTTCTTTTATT
1 TTTTTTTTTATT
45131336 T
1 T
45131337 GGCACATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 12 0.50
13 12 0.50
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTTTTTTTATT
Found at i:45139554 original size:42 final size:42
Alignment explanation
Indices: 45139447--45139556 Score: 150
Period size: 43 Copynumber: 2.6 Consensus size: 42
45139437 ATACCAATGC
*
45139447 CATATCCCAGATATGGTCTTACATGAGATCTCATATCGATGA
1 CATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGA
* * *
45139489 CAATAGCCCAGCTATGGTCTTACACGA-AGTCTCATATCGATGT
1 C-ATATCCCAGATATGGTCTTACACGAGA-TCTCATATCGATGA
*
45139532 CATATCCCAGATATAGTCTTACACG
1 CATATCCCAGATATGGTCTTACACG
45139557 TAATCTTAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 23 0.39
43 36 0.61
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGA
Found at i:45144470 original size:49 final size:49
Alignment explanation
Indices: 45144379--45144475 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 49
45144369 ATCTATTTAT
* * * * * *
45144379 AGGTTAAAAAACCTTATTCTAATTAATGTCAAATAGATGAAGTGTAGTA
1 AGGTTAAAAAACCTTATTCTAATCAATGTAAAACAAAAGAAGTATAGTA
*
45144428 AGGTTGAAAAACCTTATTCTAATCAATGTAAAACAAAAGAAGTATAGT
1 AGGTTAAAAAACCTTATTCTAATCAATGTAAAACAAAAGAAGTATAGT
45144476 TTTCTATAGA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.45, C:0.09, G:0.15, T:0.30
Consensus pattern (49 bp):
AGGTTAAAAAACCTTATTCTAATCAATGTAAAACAAAAGAAGTATAGTA
Found at i:45146103 original size:15 final size:15
Alignment explanation
Indices: 45146059--45146095 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
45146049 AATATATCAA
*
45146059 ATAAATTT-ATA-AT
1 ATAAATTTAATACTT
45146072 ATAAATTTAATACTT
1 ATAAATTTAATACTT
45146087 ATAAATTTA
1 ATAAATTTA
45146096 TTTTTTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.38
14 3 0.14
15 10 0.48
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (15 bp):
ATAAATTTAATACTT
Found at i:45147746 original size:2 final size:2
Alignment explanation
Indices: 45147739--45147763 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
45147729 TCCTTTGATT
45147739 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
45147764 TTTTTCTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:45147903 original size:34 final size:34
Alignment explanation
Indices: 45147840--45147906 Score: 107
Period size: 36 Copynumber: 1.9 Consensus size: 34
45147830 TTTTACTTTT
45147840 ATTTTTATTAATATTATAACATATATATATACAC
1 ATTTTTATTAATATTATAACATATATATATACAC
*
45147874 ATTTCTTATTATATATTATAATATATATATATA
1 ATTT-TTATTA-ATATTATAACATATATATATA
45147907 TATATATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 4 0.13
35 6 0.20
36 20 0.67
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (34 bp):
ATTTTTATTAATATTATAACATATATATATACAC
Found at i:45147945 original size:2 final size:2
Alignment explanation
Indices: 45147883--45147928 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
45147873 CATTTCTTAT
45147883 TA TA TA T- TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45147923 TA TA TA
1 TA TA TA
45147929 ATAAGTCAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 40 0.95
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45147952 original size:8 final size:8
Alignment explanation
Indices: 45147890--45147954 Score: 51
Period size: 8 Copynumber: 7.6 Consensus size: 8
45147880 TATTATATAT
45147890 TATAATATA
1 TATAA-ATA
*
45147899 TATATATA
1 TATAAATA
*
45147907 TATATATA
1 TATAAATA
*
45147915 TATATATA
1 TATAAATA
45147923 TATATAATA
1 TATA-AATA
45147932 -AGTCAACATA
1 TA-T-AA-ATA
45147942 TATAAATA
1 TATAAATA
45147950 TATAA
1 TATAA
45147955 TCATCATTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
8 32 0.65
9 11 0.22
10 5 0.10
11 1 0.02
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.42
Consensus pattern (8 bp):
TATAAATA
Found at i:45149635 original size:17 final size:17
Alignment explanation
Indices: 45149602--45149636 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
45149592 ATAGGGCAAG
*
45149602 TTGAAGCGTATGCAGAT
1 TTGAAGCGTAAGCAGAT
*
45149619 TTGAAGCGTAAGGAGAT
1 TTGAAGCGTAAGCAGAT
45149636 T
1 T
45149637 GAGTACTCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (17 bp):
TTGAAGCGTAAGCAGAT
Found at i:45150457 original size:26 final size:26
Alignment explanation
Indices: 45150428--45150597 Score: 304
Period size: 26 Copynumber: 6.5 Consensus size: 26
45150418 TGATACAAAT
45150428 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
45150454 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
45150480 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
45150506 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
45150532 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
45150558 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
45150584 TGATAATGGGTTAG
1 TGATAATGGGTTAG
45150598 ATGGAAATTT
Statistics
Matches: 137, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 137 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:45150557 original size:78 final size:78
Alignment explanation
Indices: 45150428--45150597 Score: 340
Period size: 78 Copynumber: 2.2 Consensus size: 78
45150418 TGATACAAAT
45150428 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
45150493 GGTAAATATTCCA
66 GGTAAATATTCCA
45150506 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
45150571 GGTAAATATTCCA
66 GGTAAATATTCCA
45150584 TGATAATGGGTTAG
1 TGATAATGGGTTAG
45150598 ATGGAAATTT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 92 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.36
Consensus pattern (78 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
GGTAAATATTCCA
Found at i:45151901 original size:19 final size:19
Alignment explanation
Indices: 45151877--45151923 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
45151867 TTTGGGCTTA
45151877 ATGGGCCAAAATTGGAATG
1 ATGGGCCAAAATTGGAATG
45151896 ATGGGCCAAAATTGGAATG
1 ATGGGCCAAAATTGGAATG
45151915 ATGGGCCAA
1 ATGGGCCAA
45151924 CGGGCCCAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.36, C:0.13, G:0.32, T:0.19
Consensus pattern (19 bp):
ATGGGCCAAAATTGGAATG
Found at i:45156296 original size:31 final size:31
Alignment explanation
Indices: 45156258--45156317 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
45156248 TAGCCAAGTT
45156258 GTATGTGGCAGAGATTGTGCGACTTTATGGA
1 GTATGTGGCAGAGATTGTGCGACTTTATGGA
*
45156289 GTATGTGGCGGAGATTGTGCGACTTTATG
1 GTATGTGGCAGAGATTGTGCGACTTTATG
45156318 CAGTCCCAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.20, C:0.10, G:0.37, T:0.33
Consensus pattern (31 bp):
GTATGTGGCAGAGATTGTGCGACTTTATGGA
Found at i:45157586 original size:26 final size:26
Alignment explanation
Indices: 45157557--45157663 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
45157547 TGATACAAAT
45157557 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
45157583 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
45157608 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
45157634 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
45157660 TGAT
1 TGAT
45157664 GGAATTTCAT
Statistics
Matches: 80, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
25 25 0.31
26 55 0.69
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:45157612 original size:51 final size:52
Alignment explanation
Indices: 45157557--45157663 Score: 207
Period size: 51 Copynumber: 2.1 Consensus size: 52
45157547 TGATACAAAT
45157557 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
45157608 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
45157660 TGAT
1 TGAT
45157664 GGAATTTCAT
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 49 0.89
52 6 0.11
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:45161926 original size:24 final size:24
Alignment explanation
Indices: 45161898--45162000 Score: 77
Period size: 24 Copynumber: 4.2 Consensus size: 24
45161888 TAAATAATGA
*
45161898 GAAGCTCATAAGAGCCATAATCGG
1 GAAGCTCATAAGAGCCATAATCAG
** *
45161922 GAAGCTCATGCGAGCCAATAA-CGG
1 GAAGCTCATAAGAGCC-ATAATCAG
*
45161946 GTAGCTCCA-AAGAGCCATTAATCAG
1 GAAGCT-CATAAGAGCCA-TAATCAG
* * *
45161971 GAATCTCACGAAGAACCAT-ATCAG
1 GAAGCTCA-TAAGAGCCATAATCAG
45161995 GAAGCT
1 GAAGCT
45162001 TCGGATAGCC
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
23 1 0.02
24 42 0.67
25 13 0.21
26 7 0.11
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (24 bp):
GAAGCTCATAAGAGCCATAATCAG
Found at i:45168564 original size:23 final size:24
Alignment explanation
Indices: 45168532--45168588 Score: 82
Period size: 23 Copynumber: 2.4 Consensus size: 24
45168522 ATTTTTTTTC
45168532 TTTTTAATTAATTATCATA-TATT
1 TTTTTAATTAATTATCATATTATT
45168555 ATTTTT-ATTAATTATCATATTATT
1 -TTTTTAATTAATTATCATATTATT
45168579 TTTTCTAATT
1 TTTT-TAATT
45168589 TTTCCATGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 17 0.57
24 10 0.33
25 3 0.10
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (24 bp):
TTTTTAATTAATTATCATATTATT
Found at i:45168576 original size:21 final size:23
Alignment explanation
Indices: 45168532--45168581 Score: 77
Period size: 21 Copynumber: 2.2 Consensus size: 23
45168522 ATTTTTTTTC
45168532 TTTTTAATTAATTATCATATATTA
1 TTTTTAATTAATTATCA-ATATTA
45168556 TTTTT-ATTAATTATC-ATATTA
1 TTTTTAATTAATTATCAATATTA
45168577 TTTTT
1 TTTTT
45168582 TCTAATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.42
23 10 0.38
24 5 0.19
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTTAATTAATTATCAATATTA
Found at i:45168821 original size:5 final size:5
Alignment explanation
Indices: 45168811--45168853 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
45168801 GATACCAACC
45168811 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATA
45168854 TTTATTTTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:45172443 original size:43 final size:42
Alignment explanation
Indices: 45172396--45172494 Score: 128
Period size: 42 Copynumber: 2.3 Consensus size: 42
45172386 TCCTTGACGT
*
45172396 GGTCTTACATGTAATCAAATATTGATG-CCATTGTCCCAGACAG
1 GGTCTTACACGTAATCAAATA-TGATGTCCA-TGTCCCAGACAG
* * * *
45172439 GGTCTTACACGAAATCAAATATGATGTCGATGTCCTAGACAT
1 GGTCTTACACGTAATCAAATATGATGTCCATGTCCCAGACAG
45172481 GGTCTTACACGTAA
1 GGTCTTACACGTAA
45172495 ATCATAAGTC
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
42 28 0.57
43 21 0.43
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29
Consensus pattern (42 bp):
GGTCTTACACGTAATCAAATATGATGTCCATGTCCCAGACAG
Found at i:45172497 original size:43 final size:43
Alignment explanation
Indices: 45172377--45172498 Score: 142
Period size: 43 Copynumber: 2.8 Consensus size: 43
45172367 AGCTCGTACA
* * *
45172377 ATGCCAATGTCCTTGACGTGGTCTTACATGT-AATCAAATATTG
1 ATGCC-ATGTCCTAGACATGGTCTTACACGTAAATCAAATATTG
* *
45172420 ATGCCATTGTCCCAGACAGGGTCTTACACG-AAATCAAATA-TG
1 ATGCCA-TGTCCTAGACATGGTCTTACACGTAAATCAAATATTG
*
45172462 ATGTCGATGTCCTAGACATGGTCTTACACGTAAATCA
1 ATG-CCATGTCCTAGACATGGTCTTACACGTAAATCA
45172499 TAAGTCGATG
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
42 27 0.40
43 40 0.60
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (43 bp):
ATGCCATGTCCTAGACATGGTCTTACACGTAAATCAAATATTG
Found at i:45173521 original size:38 final size:38
Alignment explanation
Indices: 45173470--45173543 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
45173460 TAATGTCCAT
*
45173470 TCATAGGTTCAATGGTCAAATAACAACATAAGGACCAC
1 TCATAAGTTCAATGGTCAAATAACAACATAAGGACCAC
45173508 TCATAAGTTCAATGGTCAAATAACAACATAAGGACC
1 TCATAAGTTCAATGGTCAAATAACAACATAAGGACC
45173544 TTTCAATTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.22
Consensus pattern (38 bp):
TCATAAGTTCAATGGTCAAATAACAACATAAGGACCAC
Found at i:45176630 original size:16 final size:15
Alignment explanation
Indices: 45176583--45176632 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
45176573 CTAAAATTTG
45176583 TTATTAAAAT-AAAA
1 TTATTAAAATAAAAA
*
45176597 TT-TTAATATTAAATAA
1 TTATTAA-AATAAA-AA
45176613 TTATTAAAATAATAAA
1 TTATTAAAATAA-AAA
45176629 TTAT
1 TTAT
45176633 ATTAATTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 4 0.14
14 4 0.14
15 2 0.07
16 14 0.48
17 5 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TTATTAAAATAAAAA
Found at i:45177327 original size:20 final size:20
Alignment explanation
Indices: 45177289--45177328 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
45177279 TTTAATTTAG
*
45177289 GCTTAGTTTGATTAGGGTGA
1 GCTTAGTTTGATAAGGGTGA
*
45177309 GCTTAGTTTGATAATGGTGA
1 GCTTAGTTTGATAAGGGTGA
45177329 AATTAGTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.05, G:0.33, T:0.40
Consensus pattern (20 bp):
GCTTAGTTTGATAAGGGTGA
Found at i:45177334 original size:20 final size:20
Alignment explanation
Indices: 45177291--45177336 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
45177281 TAATTTAGGC
* **
45177291 TTAGTTTGATTAGGGTGAGC
1 TTAGTTTGATAAGGGTGAAA
*
45177311 TTAGTTTGATAATGGTGAAA
1 TTAGTTTGATAAGGGTGAAA
45177331 TTAGTT
1 TTAGTT
45177337 ATTGAAGTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.43
Consensus pattern (20 bp):
TTAGTTTGATAAGGGTGAAA
Found at i:45177576 original size:27 final size:28
Alignment explanation
Indices: 45177524--45177579 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
45177514 TTATTAGAAT
*
45177524 TATATTTTCATTAAAAACCATTATAAAA
1 TATATTTTCATTAAAAACCATAATAAAA
*
45177552 TATATTTAT-ATTAAAAA-TATAATAAAA
1 TATATTT-TCATTAAAAACCATAATAAAA
45177579 T
1 T
45177580 TAATATTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 9 0.36
28 15 0.60
29 1 0.04
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (28 bp):
TATATTTTCATTAAAAACCATAATAAAA
Found at i:45180366 original size:40 final size:40
Alignment explanation
Indices: 45180193--45180379 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
45180183 ATAACCACAC
* ** *
45180193 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAATACTA
* * *
45180233 GCACAAATGCCTTCGGGTATTAGCCCGAATATAACA-ACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-ATACTA
* * *
45180273 GCACGAATGCCTTCGGGTCTTAGCCC-GATGT-AGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAAT-ACTA
* *
45180312 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAATACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAATACTA
* * *
45180352 GCATAAATGTCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
45180380 GTATCATTCA
Statistics
Matches: 122, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 1 0.01
39 29 0.24
40 90 0.74
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAATACTA
Found at i:45180366 original size:79 final size:79
Alignment explanation
Indices: 45180193--45180378 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 79
45180183 ATAACCACAC
* * *
45180193 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCC-GATATAACGACTAGCACAAATGCCTTCGGGTATTAACC
*
45180258 CGAATATAACAACTT
65 CGAATATAACAACTA
* * * * *
45180273 GCACGAATGCCTTCGGGTCTTAGCCCGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAACC
1 GCACAAATGCCTTCGGGTCTTAGCCCGATATA-ACGACTAGCACAAATGCCTTCGGGTATTAACC
*
45180337 CGGATATAA-ATACTA
65 CGAATATAACA-ACTA
* * *
45180352 GCATAAATGTCTTCGGGACTTAGCCCG
1 GCACAAATGCCTTCGGGTCTTAGCCCG
45180379 GGTATCATTC
Statistics
Matches: 92, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
79 64 0.70
80 27 0.29
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGATATAACGACTAGCACAAATGCCTTCGGGTATTAACCC
GAATATAACAACTA
Found at i:45188288 original size:80 final size:80
Alignment explanation
Indices: 45188148--45188351 Score: 243
Period size: 80 Copynumber: 2.5 Consensus size: 80
45188138 CGGAATACAA
* *
45188148 CCGGATATAACCAC-ACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAAT
1 CCGGATATAACAACTA-GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAAT
*
45188212 GCCTTCGGGTATTATC
65 GCCTTCGGGTATTAAC
* * * *
45188228 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
45188292 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * *
45188308 CTGGATATAA-ATACTAGCATAAATGTCTTCGGGACTTAGCCCGG
1 CCGGATATAACA-ACTAGCACGAATGCCTTCGGGTCTTAGCCCGG
45188352 GTATCATTCA
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
79 1 0.01
80 105 0.98
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:45188324 original size:40 final size:40
Alignment explanation
Indices: 45188164--45188351 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
45188154 ATAACCACAC
* ** *
45188164 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAATACTA
* * *
45188204 GCACAAATGCCTTCGGGTATTATCCCGGATATAACA-ACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-ATACTA
* * *
45188244 GCACGAATGCCTTCGGGTCTTAGCCCGGATGT-AGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAAT-ACTA
* * *
45188284 GCACAATTGCCTTCGGGTCTTAACCTGGATATAAATACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAATACTA
* * *
45188324 GCATAAATGTCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
45188352 GTATCATTCA
Statistics
Matches: 122, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAATACTA
Found at i:45196908 original size:17 final size:17
Alignment explanation
Indices: 45196886--45196929 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
45196876 ACAGAATTAG
45196886 ATCTTCTAAGATTAAAA
1 ATCTTCTAAGATTAAAA
* ** *
45196903 ATCTTCCAAGATTGTAT
1 ATCTTCTAAGATTAAAA
45196920 ATCTTCTAAG
1 ATCTTCTAAG
45196930 GTTACTTCCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (17 bp):
ATCTTCTAAGATTAAAA
Found at i:45201883 original size:17 final size:17
Alignment explanation
Indices: 45201861--45201894 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
45201851 GCCAAGTTTG
45201861 GGGGTTCCATGAACCTA
1 GGGGTTCCATGAACCTA
45201878 GGGGTTCCATGAACCTA
1 GGGGTTCCATGAACCTA
45201895 CATAATGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (17 bp):
GGGGTTCCATGAACCTA
Found at i:45216241 original size:39 final size:39
Alignment explanation
Indices: 45216185--45216470 Score: 340
Period size: 39 Copynumber: 7.3 Consensus size: 39
45216175 ATAATGGAGA
* * * *
45216185 ATTATATCCGAGTTAAGTCCAGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
45216224 GTTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * * * *
45216263 ATTATATTCAGGATAAATCCCGAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
45216302 ATTATATCTGGGCTAAGTCCCGAAGGAATTCGTACTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
45216341 ATTATATCTGGGCTAAGTCCCGAAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCG-AAGGCATTCGTGCTGGT
* * *
45216381 GTTATATCCGGGCTACGTCCCGAAGGCATTCGTACTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
45216420 ATTATATTCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGT
*
45216459 ATTATATTCGGG
1 ATTATATCCGGG
45216471 ATTAAATTCC
Statistics
Matches: 214, Mismatches: 31, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 170 0.79
40 44 0.21
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
Found at i:45225195 original size:30 final size:30
Alignment explanation
Indices: 45225161--45225221 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
45225151 TCCTTAACTC
45225161 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
45225191 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
45225221 A
1 A
45225222 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:45228211 original size:40 final size:39
Alignment explanation
Indices: 45228154--45228303 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 39
45228144 TTGGAATGAT
* * * *
45228154 ATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAA-TAA
* * *
45228194 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TAATAA
* ** *
45228234 ATCAGGGCTAAGACCCGAAGGCCTTTGTGCAAGTTACTAA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG-TAATAA
* * *
45228274 ATCCGGGTTAAGAGCCGAAGGCAATCGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
45228304 GAATCACTAT
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 83 0.92
41 4 0.04
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATAA
Found at i:45228251 original size:80 final size:80
Alignment explanation
Indices: 45228152--45228305 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
45228142 CATTGGAATG
* * * * *
45228152 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTACATCCGGGCTAAGACCCGAAGGCA
1 ATATCAGGGCTAAGACCCGAAGGCAATTATGCAAGTAACTAAATCCGGGCTAAGACCCGAAGGCA
*
45228217 TTCGTGCGAGTTGAT
66 ATCGTGCGAGTTGAT
** * * * *
45228232 ATATCAGGGCTAAGACCCGAAGGCCTTTGTGCAAGTTACTAAATCCGGGTTAAGAGCCGAAGGCA
1 ATATCAGGGCTAAGACCCGAAGGCAATTATGCAAGTAACTAAATCCGGGCTAAGACCCGAAGGCA
45228297 ATCGTGCGA
66 ATCGTGCGA
45228306 ATCACTATAA
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (80 bp):
ATATCAGGGCTAAGACCCGAAGGCAATTATGCAAGTAACTAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGAT
Found at i:45228320 original size:40 final size:40
Alignment explanation
Indices: 45228276--45228354 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 40
45228266 GTTACTAAAT
* * * *
45228276 CCGGGTTAAGAGCCGAAGGCAATCGTGCGAATCACTATAA
1 CCGGGCTAAGACCCGAAGACAATCGAGCGAATCACTATAA
* * *
45228316 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCACTATA
1 CCGGGCTAAGACCCGAAGACAATCGAGCGAATCACTATA
45228355 TCCAGTTAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.30, C:0.25, G:0.28, T:0.16
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCGAATCACTATAA
Found at i:45228322 original size:80 final size:80
Alignment explanation
Indices: 45228156--45228338 Score: 197
Period size: 80 Copynumber: 2.3 Consensus size: 80
45228146 GGAATGATAT
* * * *
45228156 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACTAAATCCGGGCTAAGACCCGAAGGCAATCG
* * *
45228221 TGCGAGTTGATATAT
66 TGCGAGATCATATAA
* * ** * * * *
45228236 CAGGGCTAAGACCCGAAGGCCTTTGTGCAAGTTACTAAATCCGGGTTAAGAGCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACTAAATCCGGGCTAAGACCCGAAGGCAATCG
45228301 TGCGA-ATCACTATAA
66 TGCGAGATCA-TATAA
* *
45228316 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
45228339 CGAGCGAGTC
Statistics
Matches: 81, Mismatches: 21, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
79 2 0.02
80 79 0.98
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACTAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAGATCATATAA
Found at i:45236298 original size:38 final size:38
Alignment explanation
Indices: 45236248--45236398 Score: 250
Period size: 38 Copynumber: 3.9 Consensus size: 38
45236238 GAACATTGGA
45236248 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT
45236286 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG-T
45236325 GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT
1 -ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT
*
45236364 -TGATAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 AT-AT-ATCCGGGCTAAGACCCGAAGGCATTCGTGC
45236399 AATCACCAAA
Statistics
Matches: 108, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
37 1 0.01
38 39 0.36
39 31 0.29
40 37 0.34
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (38 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT
Found at i:45236341 original size:40 final size:40
Alignment explanation
Indices: 45236248--45236398 Score: 272
Period size: 40 Copynumber: 3.9 Consensus size: 40
45236238 GAACATTGGA
45236248 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG-T-
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
45236286 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
45236326 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
45236366 ATA-ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGC
45236399 AATCACCAAA
Statistics
Matches: 110, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
38 37 0.34
39 30 0.27
40 43 0.39
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:45238906 original size:2 final size:2
Alignment explanation
Indices: 45238899--45238923 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
45238889 TAGACTAGTC
45238899 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
45238924 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:45242445 original size:19 final size:19
Alignment explanation
Indices: 45242421--45242461 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
45242411 ACAATTACTT
45242421 AGTTTTAACAATGAATTTA
1 AGTTTTAACAATGAATTTA
45242440 AGTTTTAACAATGAATTTA
1 AGTTTTAACAATGAATTTA
45242459 AGT
1 AGT
45242462 AAAAAAGTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.41, C:0.05, G:0.12, T:0.41
Consensus pattern (19 bp):
AGTTTTAACAATGAATTTA
Found at i:45244933 original size:47 final size:46
Alignment explanation
Indices: 45244855--45244987 Score: 135
Period size: 46 Copynumber: 2.9 Consensus size: 46
45244845 GAATTATGAG
*
45244855 GCATCCGAACTCGTTGAGTTGCATTCTGAGTTCACCTATGGATGCAA
1 GCATCCGAACTCGTTGAGTTGCATTCCGAGTTCA-CTATGGATGCAA
** * *
45244902 GCATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATACGAA
1 GCATCCGAACTCGTTGAGTTGCATTCCGAGTTCACTATGGATGC-AA
* * * * *
45244949 -CA-CCTGAGCTCATTGAGTTGCGTTTCGAGTTCATTATGG
1 GCATCC-GAACTCGTTGAGTTGCATTCCGAGTTCACTATGG
45244988 GTGAGATTAT
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
45 2 0.03
46 40 0.53
47 33 0.44
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGCATTCCGAGTTCACTATGGATGCAA
Found at i:45245817 original size:31 final size:31
Alignment explanation
Indices: 45245782--45245845 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
45245772 TTATGGGATA
*
45245782 AAGGTGTATGATTCTAGTTTCAAGGAAAATT
1 AAGGTGTATGATTCCAGTTTCAAGGAAAATT
45245813 AAGGTGTATGATTCCAGTTTCAAGGAAAATT
1 AAGGTGTATGATTCCAGTTTCAAGGAAAATT
45245844 AA
1 AA
45245846 CGGAACTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33
Consensus pattern (31 bp):
AAGGTGTATGATTCCAGTTTCAAGGAAAATT
Found at i:45249835 original size:40 final size:39
Alignment explanation
Indices: 45249790--45249919 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
45249780 CGGAATATAA
45249790 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
45249830 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
45249870 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
45249910 CCGGATATAA
1 CCGGATATAA
45249920 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:45249934 original size:40 final size:40
Alignment explanation
Indices: 45249806--45249957 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
45249796 ATAACCATGT
* * *
45249806 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
45249846 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
45249886 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
45249926 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
45249958 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:45249940 original size:80 final size:80
Alignment explanation
Indices: 45249806--45249955 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
45249796 ATAACCATGT
*
45249806 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
45249870 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
45249886 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
45249949 CCCGGAT
64 CCCGGAT
45249956 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:45255396 original size:39 final size:39
Alignment explanation
Indices: 45255298--45255400 Score: 147
Period size: 38 Copynumber: 2.7 Consensus size: 39
45255288 TGAATGTTCG
*
45255298 ATGATATCCGGGCTAA-CCCGAAGGCAATTGGGCGAGTT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAATT
*
45255336 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AATT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAATT
* *
45255374 GTGATATCCGGGTTAAGTCCCGAAGGC
1 ATGATATCCGGGCTAAG-CCCGAAGGC
45255401 TTTGTGCGGT
Statistics
Matches: 59, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
38 34 0.58
39 25 0.42
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
ATGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAATT
Found at i:45263370 original size:40 final size:39
Alignment explanation
Indices: 45263258--45263362 Score: 156
Period size: 39 Copynumber: 2.7 Consensus size: 39
45263248 GAATGTTCGA
* * *
45263258 GTGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
45263297 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
45263336 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
45263363 CTTTGTGCGG
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 50 0.85
40 9 0.15
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:45270538 original size:47 final size:47
Alignment explanation
Indices: 45270469--45270687 Score: 161
Period size: 46 Copynumber: 4.7 Consensus size: 47
45270459 ACATACCAAC
* * *
45270469 GCCATGTCCCATACACGGTCTTACACTAGCTTACATCTC-AAGTCGAT
1 GCCATGTCCCAAACATGGTCTTACACTAGCTT-CATCTCGAAGCCGAT
**
45270516 GCCATGTCCCAAACATGGTCTTACACTA---TCATCTCGTCGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTAGCTTCATCTCGAAGCCGAT
* * * * *
45270560 AG--ATGTCCTAAACAT-GTCTTACAGTGGCTTACGTCTCGAGGCCGAT
1 -GCCATGTCCCAAACATGGTCTTACACTAGCTT-CATCTCGAAGCCGAT
* * * *
45270606 G-CATGTCTCAGACAT-GTCTTACACTAGCTCTCATCAC-AATGTCGAT
1 GCCATGTCCCAAACATGGTCTTACACTAGCT-TCATCTCGAA-GCCGAT
* * *
45270652 GCCATGTCCTAGACATGGTCTTACAATAGCTCTCAT
1 GCCATGTCCCAAACATGGTCTTACACTAGCT-TCAT
45270688 AATGTGGCTG
Statistics
Matches: 138, Mismatches: 23, Indels: 21
0.76 0.13 0.12
Matches are distributed among these distances:
42 9 0.07
43 18 0.13
44 6 0.04
45 4 0.03
46 44 0.32
47 39 0.28
48 18 0.13
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (47 bp):
GCCATGTCCCAAACATGGTCTTACACTAGCTTCATCTCGAAGCCGAT
Found at i:45270705 original size:47 final size:44
Alignment explanation
Indices: 45270602--45270727 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 44
45270592 GTCTCGAGGC
45270602 CGATGCATGT-CTCAGACATGTCTTACACTAGCTCTCATCACAATGT
1 CGATGCATGTCCT-AGACATGTCTTACACTAGCTCTCAT--CAATGT
*
45270648 CGATGCCATGTCCTAGACATGGTCTTACAATAGCTCTCAT-AATGT
1 CGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCATCAATGT
* *
45270693 GGCTGATGCATGTCCCAGGCATGTCTTACACTAGC
1 --C-GATGCATGTCCTAGACATGTCTTACACTAGC
45270728 CAACAACAAC
Statistics
Matches: 70, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
45 5 0.07
46 17 0.24
47 24 0.34
48 24 0.34
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (44 bp):
CGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATCAATGT
Found at i:45272557 original size:34 final size:34
Alignment explanation
Indices: 45272508--45272575 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
45272498 TCTGGAAAAT
* *
45272508 GTTAAGTTCTATTTGAATGGTGAATTTCAATGGA
1 GTTAAGTTCCATTTGAATGATGAATTTCAATGGA
* *
45272542 GTTAAGTTCCGTTTGAATGATGAATTTCGATGGA
1 GTTAAGTTCCATTTGAATGATGAATTTCAATGGA
45272576 TATATGGGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.28, C:0.07, G:0.25, T:0.40
Consensus pattern (34 bp):
GTTAAGTTCCATTTGAATGATGAATTTCAATGGA
Found at i:45278878 original size:22 final size:22
Alignment explanation
Indices: 45278853--45278895 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
45278843 TTGATAGACA
* *
45278853 GTAAGCTCTATTGAGCTGAAAG
1 GTAAGCTCTAGTGAGCAGAAAG
45278875 GTAAGCTCTAGTGAGCAGAAA
1 GTAAGCTCTAGTGAGCAGAAA
45278896 ATAGTAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (22 bp):
GTAAGCTCTAGTGAGCAGAAAG
Found at i:45284115 original size:40 final size:40
Alignment explanation
Indices: 45283988--45284117 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
45283978 TTGCTGGAAA
* *
45283988 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * * * *
45284028 CTACATCCAGGCTAAGACCCAAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
45284068 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
45284108 TTATATCCGG
1 TTATATCCGG
45284118 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 4 0.05
40 70 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:45289938 original size:39 final size:39
Alignment explanation
Indices: 45289875--45289998 Score: 158
Period size: 39 Copynumber: 3.2 Consensus size: 39
45289865 CAGTGATGTT
*
45289875 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
45289914 TATCTGGACTTAAAGTCCGTAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * ** *
45289953 TAACCGAACTTAAGGTCCGCAGGCTACATGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
45289992 TGTCCGG
1 TATCCGG
45289999 GCTAAAATCC
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:45290552 original size:27 final size:28
Alignment explanation
Indices: 45290513--45290568 Score: 105
Period size: 27 Copynumber: 2.0 Consensus size: 28
45290503 ACTTTAAGTA
45290513 GAAGAAAAATATGTGCTGAGGAATCTAT
1 GAAGAAAAATATGTGCTGAGGAATCTAT
45290541 GAAG-AAAATATGTGCTGAGGAATCTAT
1 GAAGAAAAATATGTGCTGAGGAATCTAT
45290568 G
1 G
45290569 TATATGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 24 0.86
28 4 0.14
ACGTcount: A:0.41, C:0.07, G:0.27, T:0.25
Consensus pattern (28 bp):
GAAGAAAAATATGTGCTGAGGAATCTAT
Found at i:45297676 original size:20 final size:20
Alignment explanation
Indices: 45297653--45297690 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45297643 CACATCCAAA
*
45297653 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
45297673 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
45297691 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:45305618 original size:20 final size:20
Alignment explanation
Indices: 45305595--45305632 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45305585 CACATCCAAA
*
45305595 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
45305615 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
45305633 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:45307760 original size:43 final size:41
Alignment explanation
Indices: 45307675--45307794 Score: 109
Period size: 43 Copynumber: 2.9 Consensus size: 41
45307665 GTTTGAGACA
* * *
45307675 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGATT-AGATT
45307717 TACGTATAAGACCATGTCTGGGACATC-GGCATCGTATCT-GATT
1 T-CGTATAAGACCATGTCTGGGACA-CAGGCATCG-AT-TAGATT
* * * * *
45307760 TTGTGTAAGACCCTGTCTGGGACAAAGGTATCGAT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGAT
45307795 ATTGAATTAC
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
41 2 0.03
42 27 0.42
43 32 0.49
44 3 0.05
45 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (41 bp):
TCGTATAAGACCATGTCTGGGACACAGGCATCGATTAGATT
Found at i:45317495 original size:80 final size:80
Alignment explanation
Indices: 45317411--45317559 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
45317401 TATGGTAACC
* * * *
45317411 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
45317475 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
45317491 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
45317556 CCGG
66 CCGG
45317560 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:45317501 original size:40 final size:38
Alignment explanation
Indices: 45317452--45317559 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
45317442 ATCACGATTT
*
45317452 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
45317492 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
45317532 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
45317560 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:45326886 original size:45 final size:45
Alignment explanation
Indices: 45326822--45326912 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
45326812 GGTCTAAATC
45326822 TGAATTCCTCTTTTCTTGATCTATATGTATTCAAAATTAACCCTT
1 TGAATTCCTCTTTTCTTGATCTATATGTATTCAAAATTAACCCTT
45326867 TGAATTCCTCTTTTCTTGATCTATATGTATTCAAAATTAACCCTT
1 TGAATTCCTCTTTTCTTGATCTATATGTATTCAAAATTAACCCTT
45326912 T
1 T
45326913 TATTCACTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.26, C:0.20, G:0.07, T:0.47
Consensus pattern (45 bp):
TGAATTCCTCTTTTCTTGATCTATATGTATTCAAAATTAACCCTT
Found at i:45329109 original size:24 final size:25
Alignment explanation
Indices: 45329061--45329109 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
45329051 AACCTTGTCA
*
45329061 TCTCTTCATTTCTCTCTCATTTTTC
1 TCTCTTCATTTCCCTCTCATTTTTC
*
45329086 TCTCTTCA-TTCCCTTTCATTTTTC
1 TCTCTTCATTTCCCTCTCATTTTTC
45329110 CTCATTTCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.08, C:0.33, G:0.00, T:0.59
Consensus pattern (25 bp):
TCTCTTCATTTCCCTCTCATTTTTC
Found at i:45333732 original size:22 final size:22
Alignment explanation
Indices: 45333700--45333757 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
45333690 TAAATACGTT
*
45333700 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * * *
45333722 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAAGA
45333744 TGGCACAAAGCCAT
1 TGGCACAAAGCCAT
45333758 CGATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:45333944 original size:27 final size:26
Alignment explanation
Indices: 45333865--45333947 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
45333855 TCGATCGGTC
* * *
45333865 AACAGATATTGTGACAAAGTCACCAA
1 AACAGATATTGTGGCAAAGCCACCAG
*
45333891 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
45333918 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAAAGCCACCAG
45333945 AAC
1 AAC
45333948 GCTTCCTCCA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:45334216 original size:27 final size:27
Alignment explanation
Indices: 45334178--45334399 Score: 309
Period size: 27 Copynumber: 8.2 Consensus size: 27
45334168 AATGGTCTCG
*
45334178 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
45334205 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
**
45334232 GTAATTCTACCCTACAGGAATATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
45334259 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
45334286 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* **
45334313 GTAATTTTACCCTACAGGGGTATTTTT
1 GTAATTCTACCCTACAGGGGTATTTCA
*
45334340 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
45334367 GTATTTCTACCTTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
45334394 GTAATT
1 GTAATT
45334400 TTTCAATCGA
Statistics
Matches: 170, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 170 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:45334503 original size:26 final size:27
Alignment explanation
Indices: 45334383--45334508 Score: 116
Period size: 27 Copynumber: 4.7 Consensus size: 27
45334373 CTACCTTACA
* *
45334383 AGGGTATTTTAGTAATTTTTC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
45334409 ACGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
** ** *
45334436 AGAATATTTGGGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
45334463 AGGGTACTTT-GGTAATTTTACAACT-G
1 AGGGTA-TTTCAGTAATTTTACAAATCG
45334489 AGGGTATTTCAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
45334509 ATAAACTAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
25 4 0.05
26 32 0.39
27 42 0.51
28 4 0.05
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:45338303 original size:22 final size:22
Alignment explanation
Indices: 45338275--45338318 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
45338265 AAGCGGTTAG
*
45338275 TACGAGGCAATATAGGTATGTA
1 TACGAGGCAATACAGGTATGTA
*
45338297 TACGAGGCGATACAGGTATGTA
1 TACGAGGCAATACAGGTATGTA
45338319 CAGAACCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TACGAGGCAATACAGGTATGTA
Found at i:45339166 original size:13 final size:13
Alignment explanation
Indices: 45339148--45339173 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45339138 TTATTAAAAT
45339148 GAAGCCAGTGAGC
1 GAAGCCAGTGAGC
45339161 GAAGCCAGTGAGC
1 GAAGCCAGTGAGC
45339174 TCCACACGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.38, T:0.08
Consensus pattern (13 bp):
GAAGCCAGTGAGC
Found at i:45339829 original size:6 final size:6
Alignment explanation
Indices: 45339818--45339847 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
45339808 GCTCGTGAAA
45339818 AAAAAG AAAAAG AAAAAG AAAAA- AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A
45339848 GAGCATATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:45341158 original size:25 final size:24
Alignment explanation
Indices: 45341130--45341176 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
45341120 ACCCTTCTCA
*
45341130 TCTCTTCACTTCTCTCTCATTTTTC
1 TCTCTTCA-TTCCCTCTCATTTTTC
*
45341155 TCTCTTCATTCCCTTTCATTTT
1 TCTCTTCATTCCCTCTCATTTT
45341177 CCCTCATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.09, C:0.34, G:0.00, T:0.57
Consensus pattern (24 bp):
TCTCTTCATTCCCTCTCATTTTTC
Found at i:45343071 original size:34 final size:34
Alignment explanation
Indices: 45343028--45343098 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
45343018 AGAGTCATGG
*
45343028 TACACACTAATTTGGAGGGATTATGTACTACTAT
1 TACACACTAATTTGGAGGGATTATGTAATACTAT
45343062 TACACACTAATTTGGAGGGATTATGTAATACTAT
1 TACACACTAATTTGGAGGGATTATGTAATACTAT
45343096 TAC
1 TAC
45343099 TAATGCATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (34 bp):
TACACACTAATTTGGAGGGATTATGTAATACTAT
Found at i:45346073 original size:18 final size:16
Alignment explanation
Indices: 45346052--45346087 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
45346042 TGTAAGCGTA
45346052 TTTAAATTTATTAATATT
1 TTTAAATTT-TTAA-ATT
45346070 TTTAAATTTTTAAATT
1 TTTAAATTTTTAAATT
45346086 TT
1 TT
45346088 GTAGTTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 4 0.22
18 9 0.50
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTAAATTTTTAAATT
Found at i:45346087 original size:7 final size:8
Alignment explanation
Indices: 45346052--45346087 Score: 54
Period size: 8 Copynumber: 4.2 Consensus size: 8
45346042 TGTAAGCGTA
45346052 TTTAAATT
1 TTTAAATT
45346060 TATTAATATT
1 T-TTAA-ATT
45346070 TTTAAATT
1 TTTAAATT
45346078 TTTAAATT
1 TTTAAATT
45346086 TT
1 TT
45346088 GTAGTTTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 14 0.54
9 8 0.31
10 4 0.15
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTAAATT
Found at i:45375131 original size:81 final size:80
Alignment explanation
Indices: 45374693--45375134 Score: 439
Period size: 81 Copynumber: 5.5 Consensus size: 80
45374683 GGTATTTTAG
* * * *
45374693 TAATTTTACAAATTAGGGGTATTTTAGTAATTTTA-AAACCAGGGGTATTTCGATAATTTTAAAA
1 TAATTTTACAAACTAGGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGATAATTTTACAA
45374757 ACTAGGGGTATTTCGA
66 ACT-GGGGTATTTCGA
* * *
45374773 TAATTTTAC-AATTCAAGGGTATTTCAGTAATTTTATAAATCAGGGGTATTTCGATAATTTTACA
1 TAATTTTACAAACT-AGGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGATAATTTTACA
* **
45374837 AGTCAAGGGTATTTCGA
65 A-ACTGGGGTATTTCGA
* ** * * *
45374854 TAATTTTACAAAC-CGAGGGTATTTTGGTAACTTTAC-AATCTGAGGGTATTTCAATAATTTTA-
1 TAATTTTACAAACTAG-GGGTATTTCAGTAATTTTACAAATCAG-GGGTATTTCGATAATTTTAC
* * * *
45374916 TAATTCGAGGTATTTCGT
64 AAACT-GGGGTATTTCGA
* * * *
45374934 TAATTTTACAAA-TCGGGGGTATTTC-GCTAATTTTACAAATCCGAGGTATTTCAATAATTTTAC
1 TAATTTTACAAACT-AGGGGTATTTCAG-TAATTTTACAAATCAGGGGTATTTCGATAATTTTAC
* * * * *
45374997 AATCCGAAGCTATTTTGA
64 AAACTG-GGGTATTTCGA
* * * *
45375015 TAATTTTATAAACTGGGGGTATTTCAGTAATTTTACAAATCGGGGGTATTTCGGTAATTTTACAA
1 TAATTTTACAAACTAGGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGATAATTTTACAA
45375080 ACTGGTGGTATTTCGA
66 ACTGG-GGTATTTCGA
*
45375096 TAATTTTACAAACTAGGGGTATTTCAATAATTTTACAAA
1 TAATTTTACAAACTAGGGGTATTTCAGTAATTTTACAAA
45375135 CTAGGGTCAT
Statistics
Matches: 298, Mismatches: 48, Indels: 31
0.79 0.13 0.08
Matches are distributed among these distances:
79 5 0.02
80 90 0.30
81 198 0.66
82 5 0.02
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (80 bp):
TAATTTTACAAACTAGGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGATAATTTTACAA
ACTGGGGTATTTCGA
Found at i:45375135 original size:27 final size:27
Alignment explanation
Indices: 45374680--45375140 Score: 360
Period size: 27 Copynumber: 17.1 Consensus size: 27
45374670 TTTACCCTAC
* *
45374680 AGGGGTATTT-TAGTAATTTTACAAATT
1 AGGGGTATTTCGA-TAATTTTACAAACT
* *
45374707 AGGGGTATTT-TAGTAATTTTA-AAACC
1 AGGGGTATTTCGA-TAATTTTACAAACT
*
45374733 AGGGGTATTTCGATAATTTTAAAAACT
1 AGGGGTATTTCGATAATTTTACAAACT
*
45374760 AGGGGTATTTCGATAATTTTAC-AATT
1 AGGGGTATTTCGATAATTTTACAAACT
* *
45374786 CAAGGGTATTTC-AGTAATTTTATAAA-T
1 -AGGGGTATTTCGA-TAATTTTACAAACT
*
45374813 CAGGGGTATTTCGATAATTTTAC-AAGT
1 -AGGGGTATTTCGATAATTTTACAAACT
*
45374840 CAAGGGTATTTCGATAATTTTACAAAC-
1 -AGGGGTATTTCGATAATTTTACAAACT
* * * * *
45374867 CGAGGGTATTTTGGTAACTTTACAATCT
1 AG-GGGTATTTCGATAATTTTACAAACT
* * *
45374895 -GAGGGTATTTCAATAATTTTA-TAATT
1 AG-GGGTATTTCGATAATTTTACAAACT
* * *
45374921 CGAGGTATTTCGTTAATTTTACAAA-T
1 AGGGGTATTTCGATAATTTTACAAACT
* *
45374947 CGGGGGTATTTCGCTAATTTTACAAA-T
1 -AGGGGTATTTCGATAATTTTACAAACT
* * * *
45374974 CCGAGGTATTTCAATAATTTTACAATC-
1 -AGGGGTATTTCGATAATTTTACAAACT
* * * * *
45375001 CGAAGCTATTTTGATAATTTTATAAACT
1 AG-GGGTATTTCGATAATTTTACAAACT
*
45375029 GGGGGTATTTC-AGTAATTTTACAAA-T
1 AGGGGTATTTCGA-TAATTTTACAAACT
* *
45375055 CGGGGGTATTTCGGTAATTTTACAAACT
1 -AGGGGTATTTCGATAATTTTACAAACT
45375083 -GGTGGTATTTCGATAATTTTACAAACT
1 AGG-GGTATTTCGATAATTTTACAAACT
*
45375110 AGGGGTATTTCAATAATTTTACAAACT
1 AGGGGTATTTCGATAATTTTACAAACT
45375137 AGGG
1 AGGG
45375141 TCATAACAAC
Statistics
Matches: 362, Mismatches: 50, Indels: 44
0.79 0.11 0.10
Matches are distributed among these distances:
26 52 0.14
27 301 0.83
28 9 0.02
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTCGATAATTTTACAAACT
Found at i:45376580 original size:46 final size:47
Alignment explanation
Indices: 45376436--45376655 Score: 175
Period size: 46 Copynumber: 4.7 Consensus size: 47
45376426 TGTGTGAACT
* * * *
45376436 AGTGTAAAACATATCTGGGACAT-GCATCGGCCA-C-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGG-CATCGA-GACGAGAGCC
* * *
45376482 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCATCGAGACGAGAGCC
* * *
45376530 AGTGTAAGACATGTTTGGGAC-TTGCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGACG-AGAGCC
* ** * * *
45376576 AGTGTAAGACATGTCTGGGACAT-GTATCAGTTAT-GAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GGCATCGAGACGAGAGCC
* *
45376622 AGTATAAGACCATGTCTGGGATATGGCATCGGCA
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCA
45376656 CCTTACCCAC
Statistics
Matches: 139, Mismatches: 25, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 66 0.47
47 44 0.32
48 27 0.19
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGACGAGAGCC
Found at i:45378513 original size:15 final size:15
Alignment explanation
Indices: 45378493--45378522 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45378483 TTAAAGAAAG
45378493 AAATAAGAATGCCTA
1 AAATAAGAATGCCTA
*
45378508 AAATAAGAGTGCCTA
1 AAATAAGAATGCCTA
45378523 TTCTGCCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (15 bp):
AAATAAGAATGCCTA
Found at i:45379929 original size:28 final size:28
Alignment explanation
Indices: 45379889--45379945 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
45379879 ATCACACGTG
*
45379889 TATGTAAAATGGCTATGCTTAGTAACAA
1 TATGTAAAATGGCCATGCTTAGTAACAA
45379917 TATGTAAAATGGCCATGCTTAGTAACAA
1 TATGTAAAATGGCCATGCTTAGTAACAA
45379945 T
1 T
45379946 CATTTAAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.32
Consensus pattern (28 bp):
TATGTAAAATGGCCATGCTTAGTAACAA
Found at i:45380110 original size:27 final size:28
Alignment explanation
Indices: 45380075--45380554 Score: 196
Period size: 27 Copynumber: 17.6 Consensus size: 28
45380065 AAAGGCAAAA
* **
45380075 CAGTCATTTTACCCTACAG-GGGTATTT
1 CAGTAATTTTACCAAACAGAGGGTATTT
*
45380102 CAGTAATTTTA-CAAACTGAGGGTATTT
1 CAGTAATTTTACCAAACAGAGGGTATTT
* *
45380129 CAGTAATTTTA-CAATCTA-AAGGTATTT
1 CAGTAATTTTACCAAAC-AGAGGGTATTT
*
45380156 CAGTAATTTCA-CAAACCAG-GGGTATTT
1 CAGTAATTTTACCAAA-CAGAGGGTATTT
* * *
45380183 -TGATAATTTTA-CAATCTGAGGGTATTT
1 CAG-TAATTTTACCAAACAGAGGGTATTT
** * * *
45380210 TGGTAATTTT-TCAATCCGAGGGTATTT
1 CAGTAATTTTACCAAACAGAGGGTATTT
* *
45380237 C-GATAATTTTA-CAATCCGAGGGTATTT
1 CAG-TAATTTTACCAAACAGAGGGTATTT
**
45380264 C-GATAATTTTA-CAAATTG-GGGTATTT
1 CAG-TAATTTTACCAAACAGAGGGTATTT
* *
45380290 CGGTAATTTTA--AAA-ATTAGGGTTATTT
1 CAGTAATTTTACCAAACA-GAGGG-TATTT
** *
45380317 TGGTAATTTTACAAATTGACAATTCGAGGGTATTT
1 CAGTAATTTTACCAA---AC-A---GAGGGTATTT
** * * *
45380352 TGGTAATTTTA-CAATCCGATGGTATTT
1 CAGTAATTTTACCAAACAGAGGGTATTT
* * *
45380379 CGGTAATTCTA-AAAACTAGA-GGTATTT
1 CAGTAATTTTACCAAAC-AGAGGGTATTT
* * *
45380406 C-GATAATTTTA-CAATCTGAAGGTATTT
1 CAG-TAATTTTACCAAACAGAGGGTATTT
*
45380433 CGGTAATTTTA-CAAACCAGA-GGTATTT
1 CAGTAATTTTACCAAA-CAGAGGGTATTT
*
45380460 CAGTAATTTTA-CAAACTG-GGGTATTT
1 CAGTAATTTTACCAAACAGAGGGTATTT
* * *
45380486 CGGTAATTTTA-CAAACTG-GGGAATTT
1 CAGTAATTTTACCAAACAGAGGGTATTT
45380512 C-GATAATTTTA-CAAACTAG-GGGTATTT
1 CAG-TAATTTTACCAAAC-AGAGGGTATTT
*
45380539 CAATAATTTTA-CAAAC
1 CAGTAATTTTACCAAAC
45380555 TAGGGTCTTA
Statistics
Matches: 374, Mismatches: 47, Indels: 64
0.77 0.10 0.13
Matches are distributed among these distances:
25 4 0.01
26 78 0.21
27 257 0.69
28 8 0.02
29 2 0.01
31 1 0.00
32 1 0.00
34 3 0.01
35 16 0.04
36 4 0.01
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.39
Consensus pattern (28 bp):
CAGTAATTTTACCAAACAGAGGGTATTT
Found at i:45380138 original size:54 final size:53
Alignment explanation
Indices: 45380080--45380560 Score: 333
Period size: 54 Copynumber: 8.8 Consensus size: 53
45380070 CAAAACAGTC
** *
45380080 ATTTTACCCTACAGGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCAGTA
1 ATTTTACAATACAGGGGTATTTCGGTAATTTTACAAACTGAGGGTATTTC-GTA
** * * * *
45380134 ATTTTACAAT-CTAAAGGTATTTCAGTAATTTCACAAAC-CAGGGGTATTTTGATA
1 ATTTTACAATAC-AGGGGTATTTCGGTAATTTTACAAACTGA-GGGTATTTCG-TA
* * * * *
45380188 ATTTTACAAT-CTGAGGGTATTTTGGTAATTTTTCAATCCGAGGGTATTTCGATA
1 ATTTTACAATACAG-GGGTATTTCGGTAATTTTACAAACTGAGGGTATTTCG-TA
* * *
45380242 ATTTTACAAT-CCGAGGGTATTTCGATAATTTTACAAATTG-GGGTATTTCGGTA
1 ATTTTACAATACAG-GGGTATTTCGGTAATTTTACAAACTGAGGGTATTTC-GTA
* * * * *
45380295 ATTTTA-AAAATTAGGGTTATTTTGGTAATTTTACAAATTGACAATTCGAGGGTATTTTGGTA
1 ATTTTACAATA-CAGGGGTATTTCGGTAATTTTAC-AA---AC---T-GAGGGTA-TTTCGTA
* * * *
45380357 ATTTTACAAT-CCGATGGTATTTCGGTAATTCTAAAAACT-AGAGGTATTTCGATA
1 ATTTTACAATACAG-GGGTATTTCGGTAATTTTACAAACTGAG-GGTATTTCG-TA
* * *
45380411 ATTTTACAAT-CTGAAGGTATTTCGGTAATTTTACAAAC-CAGAGGTATTTCAGTA
1 ATTTTACAATACAG-GGGTATTTCGGTAATTTTACAAACTGAG-GGTATTTC-GTA
* *
45380465 ATTTTACAA-ACTGGGGTATTTCGGTAATTTTACAAACTG-GGGAATTTCGATA
1 ATTTTACAATACAGGGGTATTTCGGTAATTTTACAAACTGAGGGTATTTCG-TA
**
45380517 ATTTTACAA-ACTAGGGGTATTTCAATAATTTTACAAACT-AGGGT
1 ATTTTACAATAC-AGGGGTATTTCGGTAATTTTACAAACTGAGGGT
45380561 CTTAACAACC
Statistics
Matches: 346, Mismatches: 52, Indels: 59
0.76 0.11 0.13
Matches are distributed among these distances:
51 1 0.00
52 22 0.06
53 94 0.27
54 184 0.53
55 3 0.01
57 1 0.00
58 2 0.01
60 1 0.00
61 4 0.01
62 29 0.08
63 5 0.01
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (53 bp):
ATTTTACAATACAGGGGTATTTCGGTAATTTTACAAACTGAGGGTATTTCGTA
Found at i:45380202 original size:81 final size:80
Alignment explanation
Indices: 45380094--45380560 Score: 378
Period size: 81 Copynumber: 5.7 Consensus size: 80
45380084 TACCCTACAG
*
45380094 GGGTATTTC-AGTAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAATCTAAAGGTATTTCA
1 GGGTATTTCGA-TAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAATCT-AGGGTATTTC-
*
45380158 GTAATTTCACAAACCAG-
63 GTAATTTTACAAACCAGA
* * ** * *
45380175 GGGTATTTTGATAATTTTACAATCTGAGGGTATTTTGGTAATTTTTCAATCCGAGGGTATTTCGA
1 GGGTATTTCGATAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAT-CTAGGGTATTTCG-
*
45380240 TAATTTTACAATCC-GA
64 TAATTTTACAAACCAGA
* * * *
45380256 GGGTATTTCGATAATTTTACAAATTG-GGGTATTTCGGTAATTTTAAAAAT-TAGGGTTATTTTG
1 GGGTATTTCGATAATTTTACAAACTGAGGGTATTTCAGTAATTTT-ACAATCTAGGG-TA-TTTC
*
45380319 GTAATTTTACAAATTGACAATTCGA
63 GTAATTTTAC-AA---ACCA---GA
* * * * * * * * *
45380344 GGGTATTTTGGTAATTTTACAATCCGATGGTATTTCGGTAATTCTAAAAACTAGAGGTATTTCGA
1 GGGTATTTCGATAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAATCTAG-GGTATTTCG-
* *
45380409 TAATTTTAC-AATCTGA
64 TAATTTTACAAACCAGA
* * * * *
45380425 AGGTATTTCGGTAATTTTACAAAC-CAGAGGTATTTCAGTAATTTTACAAACTGGGGTATTTCGG
1 GGGTATTTCGATAATTTTACAAACTGAG-GGTATTTCAGTAATTTTACAATCTAGGGTATTTC-G
*
45380489 TAATTTTACAAA-CTG-
64 TAATTTTACAAACCAGA
* * *
45380504 GGGAATTTCGATAATTTTACAAACT-AGGGGTATTTCAATAATTTTACAAACTAGGGT
1 GGGTATTTCGATAATTTTACAAACTGA-GGGTATTTCAGTAATTTTACAATCTAGGGT
45380561 CTTAACAACC
Statistics
Matches: 317, Mismatches: 45, Indels: 50
0.77 0.11 0.12
Matches are distributed among these distances:
79 53 0.17
80 52 0.16
81 144 0.45
82 2 0.01
84 2 0.01
87 1 0.00
88 31 0.10
89 30 0.09
90 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (80 bp):
GGGTATTTCGATAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAATCTAGGGTATTTCGTA
ATTTTACAAACCAGA
Found at i:45380378 original size:169 final size:169
Alignment explanation
Indices: 45380175--45380500 Score: 440
Period size: 169 Copynumber: 1.9 Consensus size: 169
45380165 CACAAACCAG
* * * * **
45380175 GGGTATTTTGATAATTTTACAATCTGAGGGTATTTTGGTAATTTTTCAATCCGAG-GGTATTTCG
1 GGGTATTTTGATAATTTTACAATCCGAGGGTATTTCGGTAA-TTCTAAAAACGAGAGGTATTTCG
* ** * *
45380239 ATAATTTTACAATCCGAGGGTATTTCGATAATTTTACAAA-TTGGGGTATTTCGGTAATTTTAAA
65 ATAATTTTACAATCCGAAGGTATTTCGATAATTTTACAAACCAGAGGTATTTCAGTAATTTTAAA
* * *
45380303 AATTAGGGTTATTTTGGTAATTTTACAAATTGACAATTCGA
130 AACT-GGGGTATTTCGGTAATTTTACAAATTGACAATTCGA
* * *
45380344 GGGTATTTTGGTAATTTTACAATCCGATGGTATTTCGGTAATTCTAAAAACTAGAGGTATTTCGA
1 GGGTATTTTGATAATTTTACAATCCGAGGGTATTTCGGTAATTCTAAAAACGAGAGGTATTTCGA
* * *
45380409 TAATTTTACAATCTGAAGGTATTTCGGTAATTTTACAAACCAGAGGTATTTCAGTAATTTTACAA
66 TAATTTTACAATCCGAAGGTATTTCGATAATTTTACAAACCAGAGGTATTTCAGTAATTTTAAAA
45380474 ACTGGGGTATTTCGGTAATTTTACAAA
131 ACTGGGGTATTTCGGTAATTTTACAAA
45380501 CTGGGGAATT
Statistics
Matches: 135, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
168 8 0.06
169 105 0.78
170 22 0.16
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (169 bp):
GGGTATTTTGATAATTTTACAATCCGAGGGTATTTCGGTAATTCTAAAAACGAGAGGTATTTCGA
TAATTTTACAATCCGAAGGTATTTCGATAATTTTACAAACCAGAGGTATTTCAGTAATTTTAAAA
ACTGGGGTATTTCGGTAATTTTACAAATTGACAATTCGA
Found at i:45380554 original size:53 final size:52
Alignment explanation
Indices: 45380372--45380555 Score: 226
Period size: 53 Copynumber: 3.5 Consensus size: 52
45380362 ACAATCCGAT
* * * * *
45380372 GGTATTTCGGTAATTCTAAAAACTAGAGGTATTTCGATAATTTTACAATCTGAA
1 GGTATTTCGGTAATTTTACAAACT-GAGGAATTTCGATAATTTTACAAACTG-G
* *
45380426 GGTATTTCGGTAATTTTACAAACCAGAGGTATTTC-AGTAATTTTACAAACTGG
1 GGTATTTCGGTAATTTTACAAA-CTGAGGAATTTCGA-TAATTTTACAAACTGG
*
45380479 GGTATTTCGGTAATTTTACAAACTGGGGAATTTCGATAATTTTACAAACTAGG
1 GGTATTTCGGTAATTTTACAAACTGAGGAATTTCGATAATTTTACAAACT-GG
**
45380532 GGTATTTCAATAATTTTACAAACT
1 GGTATTTCGGTAATTTTACAAACT
45380556 AGGGTCTTAA
Statistics
Matches: 116, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
52 23 0.20
53 48 0.41
54 44 0.38
55 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (52 bp):
GGTATTTCGGTAATTTTACAAACTGAGGAATTTCGATAATTTTACAAACTGG
Found at i:45380555 original size:27 final size:27
Alignment explanation
Indices: 45380344--45380559 Score: 233
Period size: 27 Copynumber: 8.1 Consensus size: 27
45380334 GACAATTCGA
* * *
45380344 GGGTATTTTGGTAATTTTACAATC-CG
1 GGGTATTTCGGTAATTTTACAAACTAG
* * *
45380370 ATGGTATTTCGGTAATTCTAAAAACTAG
1 -GGGTATTTCGGTAATTTTACAAACTAG
* * *
45380398 AGGTATTTCGATAATTTTACAATCT-G
1 GGGTATTTCGGTAATTTTACAAACTAG
* *
45380424 AAGGTATTTCGGTAATTTTACAAACCAG
1 -GGGTATTTCGGTAATTTTACAAACTAG
* *
45380452 AGGTATTTCAGTAATTTTACAAACT-G
1 GGGTATTTCGGTAATTTTACAAACTAG
45380478 GGGTATTTCGGTAATTTTACAAACT-G
1 GGGTATTTCGGTAATTTTACAAACTAG
* *
45380504 GGGAATTTCGATAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTTACAAACTAG
**
45380531 GGGTATTTCAATAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTTACAAACTAG
45380558 GG
1 GG
45380560 TCTTAACAAC
Statistics
Matches: 163, Mismatches: 22, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
26 49 0.30
27 112 0.69
28 2 0.01
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACTAG
Found at i:45386039 original size:91 final size:91
Alignment explanation
Indices: 45385884--45386062 Score: 340
Period size: 91 Copynumber: 2.0 Consensus size: 91
45385874 AGGGTTTCTT
45385884 GTAATTTTAGTCAACATACATGTATTGCATTTTTCAATATTATTATTAAAAACAAGAATTAAATC
1 GTAATTTTAGTCAACATACATGTATTGCATTTTTCAATATTATTATTAAAAACAAGAATTAAATC
45385949 TAACTTATACATGTCATTCAATTTTC
66 TAACTTATACATGTCATTCAATTTTC
* *
45385975 GTAATTTTAGTCAACATACATGTATTGCATTTTTCAATATTATTATTAAAAATAGGAATTAAATC
1 GTAATTTTAGTCAACATACATGTATTGCATTTTTCAATATTATTATTAAAAACAAGAATTAAATC
45386040 TAACTTATACATGTCATTCAATT
66 TAACTTATACATGTCATTCAATT
45386063 ATCTATAATT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 86 1.00
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.42
Consensus pattern (91 bp):
GTAATTTTAGTCAACATACATGTATTGCATTTTTCAATATTATTATTAAAAACAAGAATTAAATC
TAACTTATACATGTCATTCAATTTTC
Found at i:45391569 original size:43 final size:43
Alignment explanation
Indices: 45391506--45391707 Score: 289
Period size: 43 Copynumber: 4.7 Consensus size: 43
45391496 CAACAAAATT
* * * * *
45391506 GCACACTCAGTGCTAATTAATTAACCGAAGTTATAATGGTTTC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
*
45391549 GTACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
* *
45391592 GCACACTTAGTGCCAATTAATTAGCCAAAGCTATAATTGTATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
* *
45391635 GCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTATATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
45391678 GCACACTTAGTGCC-ATTACATTAAACCGAA
1 GCACACTTAGTGCCAATTA-ATT-AACCGAA
45391708 CTTATATCTG
Statistics
Matches: 145, Mismatches: 12, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
42 4 0.03
43 135 0.93
44 6 0.04
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (43 bp):
GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
Found at i:45393179 original size:3 final size:3
Alignment explanation
Indices: 45393171--45393206 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
45393161 CCAATATATG
45393171 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
45393207 AACAAATCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:45394760 original size:30 final size:30
Alignment explanation
Indices: 45394729--45394786 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
45394719 TTTTATCGTT
45394729 AATTTTGTTATTATTTTA-AAGACATTTGTTA
1 AATTTT-TTATTATTTTAGAAG-CATTTGTTA
45394760 AATTTTTTATTATTTTAGAAGCATTTG
1 AATTTTTTATTATTTTAGAAGCATTTG
45394787 CTTGTTAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.55
Consensus pattern (30 bp):
AATTTTTTATTATTTTAGAAGCATTTGTTA
Found at i:45394889 original size:18 final size:18
Alignment explanation
Indices: 45394868--45394906 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
45394858 GAAATATTTA
*
45394868 TTTGATGT-TTTTAGTATT
1 TTTGATGTATTATA-TATT
45394886 TTTGATGTATTATATATT
1 TTTGATGTATTATATATT
45394904 TTT
1 TTT
45394907 TTAAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.67
Consensus pattern (18 bp):
TTTGATGTATTATATATT
Found at i:45394939 original size:12 final size:12
Alignment explanation
Indices: 45394909--45394941 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
45394899 ATATTTTTTT
45394909 AAAATT-ATATA
1 AAAATTAATATA
45394920 AAAA-TAATATA
1 AAAATTAATATA
45394931 AAAATTAATAT
1 AAAATTAATAT
45394942 GGGCGGACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:45405146 original size:203 final size:203
Alignment explanation
Indices: 45404782--45405189 Score: 618
Period size: 203 Copynumber: 2.0 Consensus size: 203
45404772 ATATTCCGAA
*
45404782 CCTGTTTTCAGTGATAGAAGAAAGCTACACTATAGTTCGTTGATCACTGCAGCCGTGCTCATCTC
1 CCTGTTTTCAGTGATAGAAGAAAGCTACACTATAGTTCATTGATCACTGCAGCCGTGCTCATCTC
*
45404847 GTTGTTGTATCCTAGGAGACAATTGACCAACGTTTCTCCAGCACCAAAGGAGCGACTGAATCTGT
66 GTTGTTGTATCCTAGGAGACAATTGACCAACATTTCTCCAGCACCAAAGGAGCGACTGAATCTGT
* * *
45404912 CTTAAGGAAACTGTGAAAATAGGCTTCAATTACCAGTCGGACTTCTGCCTACCTATGAGTACACA
131 CTTAAGGAAACTGTGAAAACAGGCCTCAATTACCAGTCGGACTTCTGCCTACCTACGAGTACACA
45404977 ATTTCGAT
196 ATTTCGAT
* ** * *
45404985 CCTGTTTTCGGTGATAGAAGAAAGCTAGGCTATAGTTCATTGATTACTGCAGCCGTGCTCATCTT
1 CCTGTTTTCAGTGATAGAAGAAAGCTACACTATAGTTCATTGATCACTGCAGCCGTGCTCATCTC
* * * * *
45405050 TTTGTTGTATCCTAGGAGACAGTTGACCAACATTTCTCTAGCACCAAAGGAGCTACTGAATCTTT
66 GTTGTTGTATCCTAGGAGACAATTGACCAACATTTCTCCAGCACCAAAGGAGCGACTGAATCTGT
* * * * * *
45405115 CTTAAGGAAACTGTGCAAACAGGCCTCAATTACCAGTTGGATTTTTTCTTACCTACGAGTACACA
131 CTTAAGGAAACTGTGAAAACAGGCCTCAATTACCAGTCGGACTTCTGCCTACCTACGAGTACACA
*
45405180 ATTTTGAT
196 ATTTCGAT
45405188 CC
1 CC
45405190 AATTTTATTT
Statistics
Matches: 183, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
203 183 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (203 bp):
CCTGTTTTCAGTGATAGAAGAAAGCTACACTATAGTTCATTGATCACTGCAGCCGTGCTCATCTC
GTTGTTGTATCCTAGGAGACAATTGACCAACATTTCTCCAGCACCAAAGGAGCGACTGAATCTGT
CTTAAGGAAACTGTGAAAACAGGCCTCAATTACCAGTCGGACTTCTGCCTACCTACGAGTACACA
ATTTCGAT
Found at i:45405227 original size:2 final size:2
Alignment explanation
Indices: 45405220--45405244 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
45405210 TTCATCAGAT
45405220 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
45405245 TGTTCTGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45412255 original size:39 final size:40
Alignment explanation
Indices: 45412155--45412289 Score: 227
Period size: 40 Copynumber: 3.4 Consensus size: 40
45412145 TCCAATTTCT
45412155 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
1 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
* *
45412195 AACACAAAGCCTGCGGGATTTAACTCGGATATCTATTACC
1 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
*
45412235 AGCAC-AAGCCTGCGGGATTTAACCCGGATATCTATTGCC
1 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
*
45412274 AGCACAAAGTCTGCGG
1 AGCACAAAGCCTGCGG
45412290 ACTATAAGTC
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 37 0.42
40 51 0.58
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (40 bp):
AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
Found at i:45424261 original size:26 final size:26
Alignment explanation
Indices: 45424225--45424308 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
45424215 CATGAAATTC
45424225 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
45424251 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
45424277 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
45424303 TTATCA
1 TTATCA
45424309 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:45426543 original size:24 final size:23
Alignment explanation
Indices: 45426498--45426543 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
45426488 TAGTATATTA
* *
45426498 GGCTAAATTATGAAAAATTGAAG
1 GGCTAAAATATGAAAAAATGAAG
*
45426521 GGCTAAAATGTGAAATAAATGAA
1 GGCTAAAATATGAAA-AAATGAA
45426544 ATATGTAGGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.50, C:0.04, G:0.22, T:0.24
Consensus pattern (23 bp):
GGCTAAAATATGAAAAAATGAAG
Found at i:45428763 original size:339 final size:339
Alignment explanation
Indices: 45428143--45428820 Score: 1171
Period size: 339 Copynumber: 2.0 Consensus size: 339
45428133 TAGTCCTACT
45428143 GTAACATCCCCTAACCCTTATCCATCCCCAGAACAGGATTGCGGGGCATTACCAGTCAATACAGT
1 GTAACATCCCCTAACCCTTATCCATCCCCAGAACAGGATTGCGGGGCATTACCAGTCAATACAGT
45428208 TCAACTACGGACATTAATTAATATAATTGTTTACACTTATCCTAAATTTAATGTATCGTCCCTTT
66 TCAACTACGGACATTAATTAATATAATTGTTTACACTTATCCTAAATTTAATGTATCGTCCCTTT
**
45428273 AATGGGCCCTCGAAGTCAATTATGAACAGTAAAATCAATTCGGAACTAATTTAAAATCACTATGA
131 AATGGGCCCTCGAAGTCAATTATGAACAGTAAAATCAATTCGGAACTAATTTAAAATCACTACCA
* *
45428338 ATTTTTCTCAAAATTTCAAAATTTTCCTATTGAATAGTACCCACACGCTCGTATGGTCTAGGGGA
196 ATTTTTCTCAAAATTTCAAAATTTTCCTATTGAACAGTACCCACACGCTCGTATGGTCTAAGGGA
*
45428403 CACGCCCATGTCCTTTATCCGTGTAACTCTCTGACTTATTACTTATGAACAAAATAGTTTCATAC
261 CACGCCCATGTCCTTTATCCGTGTAACTCTCTGACTAATTACTTATGAACAAAATAGTTTCATAC
*
45428468 TGCCAAGACACACG
326 AGCCAAGACACACG
* * * *
45428482 GTAACATCCCCTAACCCTTATTCATCCCCGGAATAGTATTGCGGGGCATTACCAGTCAATACAGT
1 GTAACATCCCCTAACCCTTATCCATCCCCAGAACAGGATTGCGGGGCATTACCAGTCAATACAGT
*
45428547 TCAATTACGGACATTAATTAATATAATTGTTTACACTTATCCTAAATTTAATGTATCGTCCCTTT
66 TCAACTACGGACATTAATTAATATAATTGTTTACACTTATCCTAAATTTAATGTATCGTCCCTTT
* *
45428612 AATGGTCCCTCGAAGTCCAA-TATGAATAGTAAAATCAATTC-GAGACTAATTTAAAATCACTAC
131 AATGGGCCCTCGAAGT-CAATTATGAACAGTAAAATCAATTCGGA-ACTAATTTAAAATCACTAC
* *
45428675 CAATTTTTCTCAAAATTTCAAAATTTTCCTATTGAACAGTGCCCACACGCTCGTGTGGTCTAAGG
194 CAATTTTTCTCAAAATTTCAAAATTTTCCTATTGAACAGTACCCACACGCTCGTATGGTCTAAGG
* *
45428740 GACATGCCCGTGTCCTTTATCCGTGTAACTCTCTGACTAATTACTTATGAACAAAATAGTTTCAT
259 GACACGCCCATGTCCTTTATCCGTGTAACTCTCTGACTAATTACTTATGAACAAAATAGTTTCAT
45428805 ACAGCCAAGACACACG
324 ACAGCCAAGACACACG
45428821 CCCGTGTGGC
Statistics
Matches: 320, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
338 2 0.01
339 315 0.98
340 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (339 bp):
GTAACATCCCCTAACCCTTATCCATCCCCAGAACAGGATTGCGGGGCATTACCAGTCAATACAGT
TCAACTACGGACATTAATTAATATAATTGTTTACACTTATCCTAAATTTAATGTATCGTCCCTTT
AATGGGCCCTCGAAGTCAATTATGAACAGTAAAATCAATTCGGAACTAATTTAAAATCACTACCA
ATTTTTCTCAAAATTTCAAAATTTTCCTATTGAACAGTACCCACACGCTCGTATGGTCTAAGGGA
CACGCCCATGTCCTTTATCCGTGTAACTCTCTGACTAATTACTTATGAACAAAATAGTTTCATAC
AGCCAAGACACACG
Found at i:45429660 original size:18 final size:18
Alignment explanation
Indices: 45429639--45429738 Score: 101
Period size: 18 Copynumber: 5.6 Consensus size: 18
45429629 TAACATTCAA
*
45429639 TTATTCAGTAGCAATTAG
1 TTATTCAGTAGCAATCAG
* *
45429657 TTATTCAGTAACAATCAT
1 TTATTCAGTAGCAATCAG
**
45429675 TTGCTCAGTAGCAATCAG
1 TTATTCAGTAGCAATCAG
* * *
45429693 TTATTCAGTAACGATCAA
1 TTATTCAGTAGCAATCAG
* *
45429711 TTATTCAGTAACAGTCAG
1 TTATTCAGTAGCAATCAG
*
45429729 TCATTCAGTA
1 TTATTCAGTA
45429739 CCTTTATTTA
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAGCAATCAG
Found at i:45429719 original size:36 final size:35
Alignment explanation
Indices: 45429627--45429738 Score: 134
Period size: 36 Copynumber: 3.1 Consensus size: 35
45429617 AGTTTCACTT
*
45429627 AGTAACATTCAATTATTCAGTAGCAATTAGTTATTC
1 AGTAACA-TCAATTATTCAGTAGCAATCAGTTATTC
* **
45429663 AGTAACAATCATTTGCTCAGTAGCAATCAGTTATTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAGTTATTC
* * *
45429699 AGTAACGATCAATTATTCAGTAACAGTCAGTCATTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAGTTATTC
45429735 AGTA
1 AGTA
45429739 CCTTTATTTA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
36 63 0.98
37 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (35 bp):
AGTAACATCAATTATTCAGTAGCAATCAGTTATTC
Found at i:45430938 original size:20 final size:20
Alignment explanation
Indices: 45430903--45430940 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45430893 CCTTAGTTTT
**
45430903 TCCTTTTCTTTTTTTCTTTC
1 TCCTTTTCTTCCTTTCTTTC
45430923 TCCTTTTCTTCCTTTCTT
1 TCCTTTTCTTCCTTTCTT
45430941 ATGTTTTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (20 bp):
TCCTTTTCTTCCTTTCTTTC
Found at i:45431660 original size:13 final size:13
Alignment explanation
Indices: 45431642--45431667 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45431632 CATGAAAGTA
45431642 CTTTTAGGAAACC
1 CTTTTAGGAAACC
45431655 CTTTTAGGAAACC
1 CTTTTAGGAAACC
45431668 TTATCAAGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
CTTTTAGGAAACC
Found at i:45438493 original size:18 final size:18
Alignment explanation
Indices: 45438472--45438571 Score: 92
Period size: 18 Copynumber: 5.6 Consensus size: 18
45438462 TAACATTCAA
*
45438472 TTATTCAGTAGCAATTAG
1 TTATTCAGTAGCAATCAG
* *
45438490 TTATTCAGTAACAATCAT
1 TTATTCAGTAGCAATCAG
**
45438508 TTGCTCAGTAGCAATCAG
1 TTATTCAGTAGCAATCAG
* * *
45438526 TTATTCAGTAACGATCAA
1 TTATTCAGTAGCAATCAG
* * *
45438544 TTTTTCAGTAACAGTCAG
1 TTATTCAGTAGCAATCAG
*
45438562 TCATTCAGTA
1 TTATTCAGTA
45438572 CATTTATTTA
Statistics
Matches: 64, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAGCAATCAG
Found at i:45438552 original size:36 final size:35
Alignment explanation
Indices: 45438460--45438571 Score: 127
Period size: 36 Copynumber: 3.1 Consensus size: 35
45438450 AGTTTCACTT
* *
45438460 AGTAACATTCAATTATTCAGTAGCAATTAGTTATTC
1 AGTAACA-TCAATTTTTCAGTAGCAATCAGTTATTC
*
45438496 AGTAACAATC-ATTTGCTCAGTAGCAATCAGTTATTC
1 AGTAAC-ATCAATTT-TTCAGTAGCAATCAGTTATTC
* * *
45438532 AGTAACGATCAATTTTTCAGTAACAGTCAGTCATTC
1 AGTAAC-ATCAATTTTTCAGTAGCAATCAGTTATTC
45438568 AGTA
1 AGTA
45438572 CATTTATTTA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
35 3 0.05
36 57 0.88
37 5 0.08
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (35 bp):
AGTAACATCAATTTTTCAGTAGCAATCAGTTATTC
Found at i:45443982 original size:44 final size:44
Alignment explanation
Indices: 45443914--45444006 Score: 177
Period size: 44 Copynumber: 2.1 Consensus size: 44
45443904 TATGTTTGGC
*
45443914 ACTTTTGGACAGTAAGTTACATGTGCTATTCACATGGCCGTGTA
1 ACTTGTGGACAGTAAGTTACATGTGCTATTCACATGGCCGTGTA
45443958 ACTTGTGGACAGTAAGTTACATGTGCTATTCACATGGCCGTGTA
1 ACTTGTGGACAGTAAGTTACATGTGCTATTCACATGGCCGTGTA
45444002 ACTTG
1 ACTTG
45444007 GTCATGTGTC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (44 bp):
ACTTGTGGACAGTAAGTTACATGTGCTATTCACATGGCCGTGTA
Found at i:45453523 original size:38 final size:37
Alignment explanation
Indices: 45453431--45453547 Score: 128
Period size: 38 Copynumber: 3.1 Consensus size: 37
45453421 AACAGGGGAC
* *
45453431 ACACGGCCGTGTGAAGCTATAGATTGTGTGGAAGGGTT
1 ACACGG-CATGTGAAGCTATAGGTTGTGTGGAAGGGTT
* *
45453469 ACGCGGCCATGTGAAGCTATAGGTTGTATGGAAGGGTT
1 ACACGG-CATGTGAAGCTATAGGTTGTGTGGAAGGGTT
* * *
45453507 ACACGG-GTGTACGAAGCTATAGGCTGTGTGAAAGGGTT
1 ACACGGCATGT--GAAGCTATAGGTTGTGTGGAAGGGTT
45453545 ACA
1 ACA
45453548 TGACCGTGTG
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
36 3 0.04
38 65 0.96
ACGTcount: A:0.26, C:0.14, G:0.36, T:0.25
Consensus pattern (37 bp):
ACACGGCATGTGAAGCTATAGGTTGTGTGGAAGGGTT
Found at i:45455758 original size:25 final size:25
Alignment explanation
Indices: 45455730--45455789 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
45455720 CAACTCGAGA
45455730 GAGCTTACCGATATTCAGCTCACAT
1 GAGCTTACCGATATTCAGCTCACAT
* **
45455755 GAGCTTACCGATATTTAGCTCGTAT
1 GAGCTTACCGATATTCAGCTCACAT
*
45455780 AAGCTTACCG
1 GAGCTTACCG
45455790 TTTACAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (25 bp):
GAGCTTACCGATATTCAGCTCACAT
Found at i:45459096 original size:50 final size:50
Alignment explanation
Indices: 45459020--45459196 Score: 273
Period size: 50 Copynumber: 3.5 Consensus size: 50
45459010 CCATGGCAAC
*
45459020 AAGTGATAAGTGATAGCTTCGACTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
45459070 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
45459120 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
45459170 CAAGTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
45459197 CTGATTAGTG
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 92 0.80
51 23 0.20
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:45459210 original size:31 final size:31
Alignment explanation
Indices: 45459172--45459320 Score: 226
Period size: 31 Copynumber: 4.8 Consensus size: 31
45459162 ACAAATGACA
* *
45459172 AGTGAAAAGTGGTAGCTTCAGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
45459203 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
45459234 AGTGAAAAGTAGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
45459265 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
45459296 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
45459321 AAGTGACAAG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:45459410 original size:46 final size:48
Alignment explanation
Indices: 45459349--45459469 Score: 174
Period size: 49 Copynumber: 2.5 Consensus size: 48
45459339 GATTTCCGTA
* * *
45459349 TAAGACCATATCTGGGATATGGCATCG-GTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGCTATGGCATCGAATGAGATATGTGATTACGTG
* *
45459395 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTT
1 TAAGACCATAGCTGGGCTATGGCATCGA-ATGAGATATGTGATTACGTG
45459444 TAAGACCATAGCTGGGCTATGGCATC
1 TAAGACCATAGCTGGGCTATGGCATC
45459470 ATTATATGAA
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
46 25 0.37
48 13 0.19
49 29 0.43
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCGAATGAGATATGTGATTACGTG
Found at i:45463170 original size:50 final size:50
Alignment explanation
Indices: 45463095--45463319 Score: 398
Period size: 50 Copynumber: 4.5 Consensus size: 50
45463085 CCATGGCAAC
* *
45463095 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
45463145 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
45463195 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATC-AGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
45463244 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
45463294 AAGTGATAAGTGATAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
45463320 TTGATCAATG
Statistics
Matches: 169, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
49 48 0.28
50 121 0.72
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:45463274 original size:99 final size:100
Alignment explanation
Indices: 45463095--45463319 Score: 398
Period size: 99 Copynumber: 2.3 Consensus size: 100
45463085 CCATGGCAAC
* *
45463095 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGAAAGTGATAAGTGATA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
45463160 GCTTCGGCTACACTTATCTGATCAAGGACAAATGA
66 GCTTCGGCTACACTTATCTGATCAAGGACAAATGA
45463195 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATC-AGGACAAATGAAAGTGATAAGTGATA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
* * *
45463259 GCTTCGGCTACACTTATTTGATCAAGGATAAGTGA
66 GCTTCGGCTACACTTATCTGATCAAGGACAAATGA
45463294 AAGTGATAAGTGATAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
45463320 TTGATCAATG
Statistics
Matches: 120, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
99 82 0.68
100 38 0.32
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (100 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
GCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:45463370 original size:46 final size:46
Alignment explanation
Indices: 45463312--45463403 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
45463302 AGTGATAGCT
* *
45463312 TCGGCTACTTGATCAATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 TCGGCTACTTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
* *
45463358 TCGGCTACTTGATTAGTGAAAAATGGTAGCTCCGGCTACCTGATCA
1 TCGGCTACTTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
45463404 GTGAATAGTG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (46 bp):
TCGGCTACTTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
Found at i:45463407 original size:31 final size:31
Alignment explanation
Indices: 45463359--45463427 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
45463349 ACCTGATCAT
* * *
45463359 CGGCTACTTGATTAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
* * *
45463390 CGGCTACCTGATCAGTGAATAGTGATAGCTT
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
45463421 CGGCTAC
1 CGGCTAC
45463428 AAGTGACAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
CGGCTACCTGATCAGTGAAAAATGATAGCTC
Found at i:45468857 original size:47 final size:47
Alignment explanation
Indices: 45468796--45468918 Score: 228
Period size: 47 Copynumber: 2.6 Consensus size: 47
45468786 ATCCATAAGT
*
45468796 GAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
*
45468843 GAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
45468890 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
45468919 CGTTTGCATC
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Done.