Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 165 of 378
Found at i:48166177 original size:23 final size:22
Alignment explanation
Indices: 48166151--48166194 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
48166141 AATTTTTTGT
* *
48166151 AAAATACATCATCTTTTCAAAAC
1 AAAAAACATC-TCATTTCAAAAC
*
48166174 AAAAAATATCTCATTTCAAAA
1 AAAAAACATCTCATTTCAAAA
48166195 GGATTTTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAAAACATCTCATTTCAAAAC
Found at i:48166879 original size:29 final size:29
Alignment explanation
Indices: 48166733--48166878 Score: 161
Period size: 29 Copynumber: 5.0 Consensus size: 29
48166723 TCTGTTCTCG
48166733 ATTATGAAAAGGGATGGTGACGACCATCA
1 ATTATGAAAAGGGATGGTGACGACCATCA
*
48166762 ACTATGAAAAGGGATGGTGACGACCATCA
1 ATTATGAAAAGGGATGGTGACGACCATCA
* * *
48166791 ACTATGAAAAAGGATTGTGACGACCATCAA
1 ATTATGAAAAGGGATGGTGACGACCATC-A
* * * *
48166821 ATTATGAAAAAGGGATAGCT-TC-AGCTATCG
1 ATTATG-AAAAGGGAT-GGTGACGA-CCATCA
*
48166851 ATTATGAAAAGGGATGATGACGACCATC
1 ATTATGAAAAGGGATGGTGACGACCATC
48166879 GTGATTCCAC
Statistics
Matches: 98, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
28 2 0.02
29 68 0.69
30 14 0.14
31 13 0.13
32 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (29 bp):
ATTATGAAAAGGGATGGTGACGACCATCA
Found at i:48170419 original size:40 final size:39
Alignment explanation
Indices: 48170293--48170459 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 39
48170283 CGGAATATAA
48170293 CCGGATATAATC-ACGT-GCACAAATGCC-TCGGGTCTTAGC
1 CCGGATATAA-CAAC-TAGCAC-AATGCCTTCGGGTCTTAGC
* * *
48170332 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAGC
* * *
48170372 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
*** * * * *
48170412 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
48170452 CCGGATAT
1 CCGGATAT
48170460 CATTCAATTT
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 1 0.01
39 23 0.22
40 82 0.77
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:48174971 original size:27 final size:28
Alignment explanation
Indices: 48174928--48174980 Score: 65
Period size: 27 Copynumber: 1.9 Consensus size: 28
48174918 AAACCCTAAT
* *
48174928 TTTCTCCTTCTTTTTCT-TTTTCTTTTC
1 TTTCTCCTTCTTCTTCTCTGTTCTTTTC
48174955 TTTCTCCCTT-TTCTTCTCTGTTCTTT
1 TTTCT-CCTTCTTCTTCTCTGTTCTTT
48174981 CTTCGTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.00, C:0.28, G:0.02, T:0.70
Consensus pattern (28 bp):
TTTCTCCTTCTTCTTCTCTGTTCTTTTC
Found at i:48175043 original size:13 final size:14
Alignment explanation
Indices: 48175027--48175062 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
48175017 TTTGTTTAAT
48175027 TATAATA-ATATAA
1 TATAATATATATAA
48175040 TATAATATA-ATAA
1 TATAATATATATAA
48175053 TATAATATAT
1 TATAATATAT
48175063 TTACTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 20 0.95
14 1 0.05
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
TATAATATATATAA
Found at i:48175050 original size:18 final size:18
Alignment explanation
Indices: 48175027--48175061 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
48175017 TTTGTTTAAT
48175027 TATAATAATATAATATAA
1 TATAATAATATAATATAA
48175045 TATAATAATATAATATA
1 TATAATAATATAATATA
48175062 TTTACTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TATAATAATATAATATAA
Found at i:48178484 original size:42 final size:43
Alignment explanation
Indices: 48178425--48178537 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 43
48178415 TGTGTTATTG
* *
48178425 TGTAAGACTACGTCTGGGACGTTGGCATC-ATATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCAATATTTGATTACA
*
48178467 TGTAAGACC-CTGTCTGGGACAG-TGGCATCAATGTTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCAATATTTGATTACA
*
48178510 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
48178538 TGTACGAGAT
Statistics
Matches: 62, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.40
43 35 0.56
44 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCAATATTTGATTACA
Found at i:48189071 original size:42 final size:43
Alignment explanation
Indices: 48188964--48189118 Score: 156
Period size: 43 Copynumber: 3.6 Consensus size: 43
48188954 ATATGTGTTA
*
48188964 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGACTTATGATT
1 TCGTGTAAGACCATGTCTGGGACGTTGACATCGACTTATGATT
* *
48189007 TACGTGTAAGACCACGTTTGGGACGTTGACATC-A-TATATGATT
1 T-CGTGTAAGACCATGTCTGGGACGTTGACATCGACT-TATGATT
* * * *
48189050 TCGTGTAAGACCTTGTCTGGGACAG-TGGCATCGA-TGTTTGATC
1 TCGTGTAAGACCATGTCTGGGAC-GTTGACATCGACT-TATGATT
* * *
48189093 ACATGTAAGACCACGTCTGGGACGTT
1 TCGTGTAAGACCATGTCTGGGACGTT
48189119 AGCATTGTAC
Statistics
Matches: 93, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
42 27 0.29
43 38 0.41
44 28 0.30
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
TCGTGTAAGACCATGTCTGGGACGTTGACATCGACTTATGATT
Found at i:48192199 original size:27 final size:27
Alignment explanation
Indices: 48192169--48192233 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
48192159 TATGTGGCTA
* *
48192169 AGCCACCAGTATCAGTAAATATGGCAT
1 AGCCACCAGTAACAGTAAATATGACAT
* * *
48192196 AGCCTCTAGTAACAGTAAATGTGACAT
1 AGCCACCAGTAACAGTAAATATGACAT
*
48192223 AGTCACCAGTA
1 AGCCACCAGTA
48192234 CAGAATTTCC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (27 bp):
AGCCACCAGTAACAGTAAATATGACAT
Found at i:48192458 original size:55 final size:55
Alignment explanation
Indices: 48192375--48192534 Score: 234
Period size: 55 Copynumber: 2.9 Consensus size: 55
48192365 GCATAACTGA
*
48192375 CATTTTA-CCATACAGGGGTATTATGGTCATTTTACCCTACAGGGGCATTACAGT
1 CATTTTACCCATACAGGGGCATTATGGTCATTTTACCCTACAGGGGCATTACAGT
* *
48192429 CATTTTACCCATACAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGGT
1 CATTTTACCCATACAGGGGCATTATGGTCATTTTACCCTACAGGGGCATTACAGT
* * * * *
48192484 CATTTTACTC-TACAGGGCCATTATGGTTATTTTACTCTACAAGGGCATTAC
1 CATTTTACCCATACAGGGGCATTATGGTCATTTTACCCTACAGGGGCATTAC
48192535 GGTTATATAA
Statistics
Matches: 96, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 43 0.45
55 53 0.55
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (55 bp):
CATTTTACCCATACAGGGGCATTATGGTCATTTTACCCTACAGGGGCATTACAGT
Found at i:48192500 original size:82 final size:81
Alignment explanation
Indices: 48192361--48192537 Score: 228
Period size: 82 Copynumber: 2.2 Consensus size: 81
48192351 TACGGAACAT
* * * * * *
48192361 AAGGGCATAACTGACATTTTACCATACAGGGGTATTATGGTCATTTTACCCTACAGGGGCATTAC
1 AAGGGCATTACGGTCATTTTACCATACAGGGGCATTACGGTCATTTTACCCTACAGGGCCATTAC
48192426 AGTCATTTTACCCATAC
66 AGTCATTTTACCC-TAC
* * * *
48192443 AGGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACTCTACAGGGCCATTAT
1 AAGGGCATTACGGTCATTTTACCATACAGGGGCATTACGGTCATTTTACCCTACAGGGCCATTAC
* * *
48192508 GGTTATTTTACTCTAC
66 AGTCATTTTACCCTAC
48192524 AAGGGCATTACGGT
1 AAGGGCATTACGGT
48192538 TATATAACGA
Statistics
Matches: 81, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
81 16 0.20
82 65 0.80
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (81 bp):
AAGGGCATTACGGTCATTTTACCATACAGGGGCATTACGGTCATTTTACCCTACAGGGCCATTAC
AGTCATTTTACCCTAC
Found at i:48192540 original size:27 final size:27
Alignment explanation
Indices: 48192375--48192537 Score: 227
Period size: 27 Copynumber: 6.0 Consensus size: 27
48192365 GCATAACTGA
* * *
48192375 CATTTTACCATACAGGGGTATTATGGT
1 CATTTTACCCTACAGGGGCATTACGGT
*
48192402 CATTTTACCCTACAGGGGCATTACAGT
1 CATTTTACCCTACAGGGGCATTACGGT
48192429 CATTTTACCCATACAGGGGCATTACGGT
1 CATTTTACCC-TACAGGGGCATTACGGT
48192457 CATTTTACCCTACAGGGGCATTACGGT
1 CATTTTACCCTACAGGGGCATTACGGT
* * *
48192484 CATTTTACTCTACAGGGCCATTATGGT
1 CATTTTACCCTACAGGGGCATTACGGT
* * *
48192511 TATTTTACTCTACAAGGGCATTACGGT
1 CATTTTACCCTACAGGGGCATTACGGT
48192538 TATATAACGA
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
27 97 0.79
28 26 0.21
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (27 bp):
CATTTTACCCTACAGGGGCATTACGGT
Found at i:48194691 original size:14 final size:14
Alignment explanation
Indices: 48194670--48194705 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
48194660 CTTGCCTAAT
*
48194670 TGTGCAAGTTGTGA
1 TGTGCAAGTTGTAA
*
48194684 TTTGCAAGTTGTAA
1 TGTGCAAGTTGTAA
48194698 TGTGCAAG
1 TGTGCAAG
48194706 CGGTGCAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.25, C:0.08, G:0.31, T:0.36
Consensus pattern (14 bp):
TGTGCAAGTTGTAA
Found at i:48203096 original size:22 final size:22
Alignment explanation
Indices: 48203071--48203113 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
48203061 TAGTCATATA
48203071 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
48203093 ATAATTTATTATTTTAATAAA
1 ATAAATTATTAATATAATAAA
48203114 ATTATTTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:48203126 original size:21 final size:22
Alignment explanation
Indices: 48203085--48203126 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
48203075 ATTATTAATA
*
48203085 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
*
48203107 TAATAAA-ATTATTTAATATT
1 TAATAAATATAATTTAATATT
48203127 CCAATTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:48208943 original size:2 final size:2
Alignment explanation
Indices: 48208932--48208978 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
48208922 ACTAATTAAT
48208932 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
48208973 TA TA TA
1 TA TA TA
48208979 AAAGCACGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:48209153 original size:17 final size:18
Alignment explanation
Indices: 48209121--48209154 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
48209111 AAAAGTTGTG
48209121 ATAATTACACATTTAAAA
1 ATAATTACACATTTAAAA
*
48209139 ATAATTAGA-ATTTAAA
1 ATAATTACACATTTAAA
48209155 TTACAATTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (18 bp):
ATAATTACACATTTAAAA
Found at i:48210286 original size:2 final size:2
Alignment explanation
Indices: 48210279--48210304 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
48210269 GCAATTCAAC
48210279 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
48210305 AATGTAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:48210385 original size:52 final size:52
Alignment explanation
Indices: 48210328--48210431 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
48210318 AAAGCAAACA
48210328 GGGGTTGCTTTATTCTTAGGCAATCTGTAAATTGTTAACTAATACTTAAATT
1 GGGGTTGCTTTATTCTTAGGCAATCTGTAAATTGTTAACTAATACTTAAATT
*
48210380 GGGGTTGCTTTATTCTTAGGCAATCTGTAAATTGTTAAGTAATACTTAAATT
1 GGGGTTGCTTTATTCTTAGGCAATCTGTAAATTGTTAACTAATACTTAAATT
48210432 TACTTTAATA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.42
Consensus pattern (52 bp):
GGGGTTGCTTTATTCTTAGGCAATCTGTAAATTGTTAACTAATACTTAAATT
Found at i:48211336 original size:34 final size:34
Alignment explanation
Indices: 48211293--48211411 Score: 116
Period size: 34 Copynumber: 3.3 Consensus size: 34
48211283 AAAATATAAA
48211293 AATAAAATATTTAAAATATTTTAATATAATTTAT
1 AATAAAATATTTAAAATATTTTAATATAATTTAT
* *
48211327 AATAAAATATTTTAAACATTTTAATATAATTTA-
1 AATAAAATATTTAAAATATTTTAATATAATTTAT
48211360 ATATAAAAATAATTATATTAAATTATATTTAATAATAA-TTAT
1 A-AT-AAAAT-ATT-TA--AAA-TAT-TTTAAT-ATAATTTAT
*
48211402 ATTAAAATAT
1 AATAAAATAT
48211412 GGTTAAATTA
Statistics
Matches: 70, Mismatches: 5, Indels: 15
0.78 0.06 0.17
Matches are distributed among these distances:
33 1 0.01
34 33 0.47
35 5 0.07
36 3 0.04
37 1 0.01
39 5 0.07
40 7 0.10
41 10 0.14
42 5 0.07
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (34 bp):
AATAAAATATTTAAAATATTTTAATATAATTTAT
Found at i:48211396 original size:26 final size:26
Alignment explanation
Indices: 48211367--48211453 Score: 84
Period size: 26 Copynumber: 3.2 Consensus size: 26
48211357 TTAATATAAA
48211367 AATAATTATATTAAATTATATTTAAT
1 AATAATTATATTAAATTATATTTAAT
* * *
48211393 AATAATTATATTAAAATATGGTTAAATT
1 AATAATTATATTAAATTAT-ATTTAA-T
* * * *
48211421 ATTTATTTTTATTAAATTATTTTTAAT
1 A-ATAATTATATTAAATTATATTTAAT
48211448 AATAAT
1 AATAAT
48211454 CCTACTAAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
26 21 0.45
27 6 0.13
28 6 0.13
29 14 0.30
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (26 bp):
AATAATTATATTAAATTATATTTAAT
Found at i:48214110 original size:36 final size:36
Alignment explanation
Indices: 48214070--48214142 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
48214060 TAAACCTGTA
48214070 AAAAAAACAGTAACATTAGGAAATAAAAGACAACAT
1 AAAAAAACAGTAACATTAGGAAATAAAAGACAACAT
*
48214106 AAAAATACAGTAACATTAGGAAATAAAAGACAACAT
1 AAAAAAACAGTAACATTAGGAAATAAAAGACAACAT
48214142 A
1 A
48214143 GGACAAAACA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.63, C:0.11, G:0.11, T:0.15
Consensus pattern (36 bp):
AAAAAAACAGTAACATTAGGAAATAAAAGACAACAT
Found at i:48219339 original size:29 final size:29
Alignment explanation
Indices: 48219306--48219364 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
48219296 ATAAATAGAT
48219306 GGCACTAGTAGAGTTACATAAGTTTTTGC
1 GGCACTAGTAGAGTTACATAAGTTTTTGC
*
48219335 GGCACTAGTAGAGTTACGTAAGTTTTTGC
1 GGCACTAGTAGAGTTACATAAGTTTTTGC
48219364 G
1 G
48219365 CATACATTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (29 bp):
GGCACTAGTAGAGTTACATAAGTTTTTGC
Found at i:48220850 original size:27 final size:26
Alignment explanation
Indices: 48220802--48220988 Score: 225
Period size: 27 Copynumber: 6.9 Consensus size: 26
48220792 GCGAGGCTGC
* *
48220802 CAGATATTGTGAC-GAAGTCACCAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
*
48220828 ACAGATATTGTGGCAGAGCCACCAGAA
1 -CAGATATTGTGGCAGAGCCACCAGAT
*
48220855 CAGATATATGTGGCAGAGCCACCACAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
*
48220882 CAGATAATTGTGGCATAGCCACCAGGA-
1 CAGAT-ATTGTGGCAGAGCCACCA-GAT
48220909 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
48220936 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
*
48220963 CAGATAATTTGTGGCATAGCCACCAG
1 CAGAT-A-TTGTGGCAGAGCCACCAG
48220989 GACGCTTCCT
Statistics
Matches: 143, Mismatches: 9, Indels: 15
0.86 0.05 0.09
Matches are distributed among these distances:
26 11 0.08
27 110 0.77
28 21 0.15
29 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:48220895 original size:54 final size:53
Alignment explanation
Indices: 48220820--48220988 Score: 248
Period size: 54 Copynumber: 3.1 Consensus size: 53
48220810 GTGACGAAGT
48220820 CACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
* * *
48220874 CACCACATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
* * *
48220928 CACCAGATCAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGC
1 CACCAGATCAGATAT-TGTGGCAGAGCCACCAGAACAGAT-ATATGTGGCAGAGC
48220983 CACCAG
1 CACCAG
48220989 GACGCTTCCT
Statistics
Matches: 103, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
53 7 0.07
54 78 0.76
55 18 0.17
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.18
Consensus pattern (53 bp):
CACCAGATCAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:48220921 original size:81 final size:81
Alignment explanation
Indices: 48220828--48220991 Score: 294
Period size: 81 Copynumber: 2.0 Consensus size: 81
48220818 GTCACCAGAT
48220828 ACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCACATCAGATAA-TTG
1 ACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCACATCAGATAATTTG
48220892 TGGCATAGCCACCAGG
66 TGGCATAGCCACCAGG
* *
48220908 ACAGATATATGTGGCAGAGCCACCAGATCAGATATATGTGGCAGAGCCACCAGATCAGATAATTT
1 ACAGATAT-TGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCACATCAGATAATTT
48220973 GTGGCATAGCCACCAGG
65 GTGGCATAGCCACCAGG
48220990 AC
1 AC
48220992 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
80 8 0.10
81 51 0.64
82 21 0.26
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (81 bp):
ACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCACATCAGATAATTTG
TGGCATAGCCACCAGG
Found at i:48222638 original size:26 final size:26
Alignment explanation
Indices: 48222607--48222685 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
48222597 TGAAATTTCC
48222607 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
48222633 ATCATGAAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
48222659 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
48222685 A
1 A
48222686 CCAATTTGTA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:48223397 original size:25 final size:24
Alignment explanation
Indices: 48223350--48223405 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
48223340 CGTTAGTGTT
* **
48223350 ATTATATATGAAATATATCAAATTAG
1 ATTATA-ATAAAATATAAAAAATT-G
48223376 ATTATAATAAAATATAAAAAATTG
1 ATTATAATAAAATATAAAAAATTG
48223400 -TTATAA
1 ATTATAA
48223406 CTTATTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 6 0.22
24 1 0.04
25 14 0.52
26 6 0.22
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (24 bp):
ATTATAATAAAATATAAAAAATTG
Found at i:48232336 original size:43 final size:44
Alignment explanation
Indices: 48232289--48232372 Score: 109
Period size: 43 Copynumber: 1.9 Consensus size: 44
48232279 GAATTAAGAC
* * *
48232289 TTAATTATTATTAAATTAATATTAGAAATAAT-TT-ATTAATGTA
1 TTAATAATTATTAAATT-ATAATAAAAATAATGTTAATTAATGTA
*
48232332 TTAATAATTATTATATTATAATAAAAATAATGTTAATTAAT
1 TTAATAATTATTAAATTATAATAAAAATAATGTTAATTAAT
48232373 TAGTTTACAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 12 0.34
43 17 0.49
44 6 0.17
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.48
Consensus pattern (44 bp):
TTAATAATTATTAAATTATAATAAAAATAATGTTAATTAATGTA
Found at i:48232660 original size:21 final size:23
Alignment explanation
Indices: 48232634--48232679 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
48232624 CATCATTATT
*
48232634 TATATAA-AATA-AATTCAAATA
1 TATATAATAATAGAATTAAAATA
*
48232655 TATATAATTATAGAATTAAAATA
1 TATATAATAATAGAATTAAAATA
48232678 TA
1 TA
48232680 AAATTATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.33
22 3 0.14
23 11 0.52
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (23 bp):
TATATAATAATAGAATTAAAATA
Found at i:48232684 original size:21 final size:21
Alignment explanation
Indices: 48232644--48232698 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
48232634 TATATAAAAT
*
48232644 AAATTCAAATATATATAATTATA
1 AAATT-AAA-ATATAAAATTATA
*
48232667 GAATTAAAATATAAAATTATA
1 AAATTAAAATATAAAATTATA
48232688 AAATTATAAAT
1 AAATTA-AAAT
48232699 TTATGTAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 17 0.61
22 7 0.25
23 4 0.14
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
AAATTAAAATATAAAATTATA
Found at i:48233318 original size:30 final size:29
Alignment explanation
Indices: 48233260--48233317 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
48233250 ATGGTGGCAG
48233260 ATCATGTTAGCTCAATTTCCATTTTTTTT
1 ATCATGTTAGCTCAATTTCCATTTTTTTT
48233289 ATCATGTTAGCTCAATTTCCATTTTTTTT
1 ATCATGTTAGCTCAATTTCCATTTTTTTT
48233318 TTTTACTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.21, C:0.17, G:0.07, T:0.55
Consensus pattern (29 bp):
ATCATGTTAGCTCAATTTCCATTTTTTTT
Found at i:48247547 original size:40 final size:41
Alignment explanation
Indices: 48247488--48247669 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 41
48247478 TAACCACTCG
* * * * *
48247488 CAAA-GCCATCGGGCCTTAGCCCGGATA-TGGTCACTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTAGCA
* * *
48247527 CAAATGCCTTCGGGAGTTAGCCCGGATA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTAGCA
*
48247567 CAAATGCCTTCGGGACTTAACCC-GAAATTAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACT-AGCA
* * *
48247607 CAAATGCCTTCGAGACTTAACCCGGA-ATTAATCACTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTAGCA
*
48247647 CAAATGTCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAACCC
48247670 CGTTATCAAT
Statistics
Matches: 123, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
39 8 0.07
40 113 0.92
41 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTAGCA
Found at i:48250287 original size:44 final size:45
Alignment explanation
Indices: 48250233--48250405 Score: 199
Period size: 47 Copynumber: 3.8 Consensus size: 45
48250223 TATACGTGCT
* *
48250233 GATGCATGTCCCAGACATGTCTTACACTAGCACAAC-TCTTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACATCGTCTTAGCC
* * *
48250277 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCATCGTC-GAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-A-CATCGTCTTA-GCC
* *
48250324 GATGTATGTCCCAGACATGTCTTACACTGGCAC-TCGTCTTTGTACC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACATCGTCTTAG--CC
48250370 GATGCCATGTCCCAGACATGGTCTTACACTGGCACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACA
48250406 CAAGAAGTCT
Statistics
Matches: 108, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
44 34 0.31
45 2 0.02
46 11 0.10
47 46 0.43
48 15 0.14
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.26
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACATCGTCTTAGCC
Found at i:48250341 original size:91 final size:94
Alignment explanation
Indices: 48250233--48250402 Score: 240
Period size: 91 Copynumber: 1.8 Consensus size: 94
48250223 TATACGTGCT
*
48250233 GATGCATGTCCCAGACATGTCTTACACTAGCACAAC-TCTTAG-CCGATG-CGTGTCCCAGACA-
1 GATGCATGTCCCAGACATGTCTTACACTAGCAC-ACGTCTTAGACCGATGCCATGTCCCAGACAT
48250294 CGTCTTACACTGGCTATCATCGTCGAGGCC
65 CGTCTTACACTGGCTATCATCGTCGAGGCC
* * * *
48250324 GATGTATGTCCCAGACATGTCTTACACTGGCACTCGTCTTTGTACCGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACGTCTTAG-ACCGATGCCATGTCCCAGACAT
*
48250389 GGTCTTACACTGGC
65 CGTCTTACACTGGC
48250403 ACACAAGAAG
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
90 1 0.01
91 36 0.53
93 6 0.09
94 12 0.18
95 13 0.19
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (94 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACACGTCTTAGACCGATGCCATGTCCCAGACATC
GTCTTACACTGGCTATCATCGTCGAGGCC
Found at i:48251565 original size:50 final size:50
Alignment explanation
Indices: 48251485--48251589 Score: 194
Period size: 50 Copynumber: 2.1 Consensus size: 50
48251475 TTACATGACT
48251485 AATACTACCTTAATAATAAGCCAATGCCTTTGGCTAAATCATAATATTAC
1 AATACTACCTTAATAATAAGCCAATGCCTTTGGCTAAATCATAATATTAC
*
48251535 AATACTACCTTAATAATAAGCCAATTCCTTTGGCTAAATCATAATATTAC
1 AATACTACCTTAATAATAAGCCAATGCCTTTGGCTAAATCATAATATTAC
48251585 -ATACT
1 AATACT
48251590 CACATTAAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 5 0.09
50 49 0.91
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (50 bp):
AATACTACCTTAATAATAAGCCAATGCCTTTGGCTAAATCATAATATTAC
Found at i:48252660 original size:114 final size:114
Alignment explanation
Indices: 48252460--48252694 Score: 470
Period size: 114 Copynumber: 2.1 Consensus size: 114
48252450 GTGAAAATAG
48252460 ACTCATTAAGCTTTAATCCCATATTTTATTCTGCCTCTAACTCATTTTCCACTATTTTTAGTGTA
1 ACTCATTAAGCTTTAATCCCATATTTTATTCTGCCTCTAACTCATTTTCCACTATTTTTAGTGTA
48252525 TTTTCAAAGTTACACTACTGCAGTAACTCAAATCTGTCAAGGCTAAGTT
66 TTTTCAAAGTTACACTACTGCAGTAACTCAAATCTGTCAAGGCTAAGTT
48252574 ACTCATTAAGCTTTAATCCCATATTTTATTCTGCCTCTAACTCATTTTCCACTATTTTTAGTGTA
1 ACTCATTAAGCTTTAATCCCATATTTTATTCTGCCTCTAACTCATTTTCCACTATTTTTAGTGTA
48252639 TTTTCAAAGTTACACTACTGCAGTAACTCAAATCTGTCAAGGCTAAGTT
66 TTTTCAAAGTTACACTACTGCAGTAACTCAAATCTGTCAAGGCTAAGTT
48252688 ACTCATT
1 ACTCATT
48252695 CATGGTCATT
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 121 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (114 bp):
ACTCATTAAGCTTTAATCCCATATTTTATTCTGCCTCTAACTCATTTTCCACTATTTTTAGTGTA
TTTTCAAAGTTACACTACTGCAGTAACTCAAATCTGTCAAGGCTAAGTT
Found at i:48253531 original size:20 final size:18
Alignment explanation
Indices: 48253497--48253533 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
48253487 GCAACTCATA
48253497 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
48253515 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
48253534 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:48254350 original size:164 final size:164
Alignment explanation
Indices: 48254079--48254402 Score: 630
Period size: 164 Copynumber: 2.0 Consensus size: 164
48254069 AGTCCTTTTT
*
48254079 CGAAATTGGACTAGAAATCGCTAAAATTAACTTACCAAAATTTACATGCACTTATAAAATTATAT
1 CGAAATTGGACTAGAAATCGCTAAAATTAACTTACCAAAATTTACATACACTTATAAAATTATAT
48254144 TATAACACAAAATAATACTAAAATAATTTTATCTGGCCTCGAAATAGTGGTCCCGAAACTACTGT
66 TATAACACAAAATAATACTAAAATAATTTTATCTGGCCTCGAAATAGTGGTCCCGAAACTACTGT
48254209 TCTGACTAGGCCCAAAATCGGGCTGTTACATTTA
131 TCTGACTAGGCCCAAAATCGGGCTGTTACATTTA
48254243 CGAAATTGGACTAGAAATCGCTAAAATTAACTTACCAAAATTTACATACACTTATAAAATTATAT
1 CGAAATTGGACTAGAAATCGCTAAAATTAACTTACCAAAATTTACATACACTTATAAAATTATAT
*
48254308 TATAACACAAAATAATACTAAAATAATTTTATCTGGCCTCGAAATAGTGGTCCCGAAACTACTTT
66 TATAACACAAAATAATACTAAAATAATTTTATCTGGCCTCGAAATAGTGGTCCCGAAACTACTGT
48254373 TCTGACTAGGCCCAAAATCGGGCTGTTACA
131 TCTGACTAGGCCCAAAATCGGGCTGTTACA
48254403 GGCAATCATA
Statistics
Matches: 158, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
164 158 1.00
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.30
Consensus pattern (164 bp):
CGAAATTGGACTAGAAATCGCTAAAATTAACTTACCAAAATTTACATACACTTATAAAATTATAT
TATAACACAAAATAATACTAAAATAATTTTATCTGGCCTCGAAATAGTGGTCCCGAAACTACTGT
TCTGACTAGGCCCAAAATCGGGCTGTTACATTTA
Found at i:48256115 original size:41 final size:39
Alignment explanation
Indices: 48256011--48256128 Score: 141
Period size: 37 Copynumber: 3.0 Consensus size: 39
48256001 GCCTTATTGG
* *
48256011 ATAATTCGAAGTAATAAATTGACACCCAGTGTCTCATCGG
1 ATAAATCGAAG-AATAAATTGACACCCAGTGTCTCATCGA
* * *
48256051 CTAAATCGAAG--TAAATTGGCACCCAGTGCCTCATCGA
1 ATAAATCGAAGAATAAATTGACACCCAGTGTCTCATCGA
*
48256088 ATATATCCGAAGCAATAAATTGACACCCAGTGTCTCATCGA
1 ATAAAT-CGAAG-AATAAATTGACACCCAGTGTCTCATCGA
48256129 CTCGAAGTCG
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
37 27 0.42
38 5 0.08
40 9 0.14
41 24 0.37
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (39 bp):
ATAAATCGAAGAATAAATTGACACCCAGTGTCTCATCGA
Found at i:48256654 original size:18 final size:19
Alignment explanation
Indices: 48256628--48256663 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
48256618 TAAACTAAAT
*
48256628 TTAACTCCCT-AATTTCAC
1 TTAAATCCCTAAATTTCAC
48256646 TTAAATCCCTAAATTTCA
1 TTAAATCCCTAAATTTCA
48256664 AAATTTCACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAAATCCCTAAATTTCAC
Found at i:48260821 original size:35 final size:35
Alignment explanation
Indices: 48260774--48260843 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
48260764 TTATTAAAGA
*
48260774 CTTAATAGAGTATATTTTTACTAAGGTTTCAATTG
1 CTTAATAAAGTATATTTTTACTAAGGTTTCAATTG
48260809 CTTAATAAAGTATATTTTTACTAAGGTTTCAATTG
1 CTTAATAAAGTATATTTTTACTAAGGTTTCAATTG
48260844 ATTTTTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
CTTAATAAAGTATATTTTTACTAAGGTTTCAATTG
Found at i:48264269 original size:40 final size:40
Alignment explanation
Indices: 48264214--48264435 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
48264204 GATGATAACG
* * * *
48264214 GGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
48264254 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
48264294 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
48264334 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * * * *
48264374 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCATATCT
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
48264414 GGGCTAAGGCCCGATGGC-TTTG
1 GGGTTAAGTCCCGAAGGCATTTG
48264436 CGAGTGGTTA
Statistics
Matches: 170, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 4 0.02
40 165 0.97
41 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:48267920 original size:21 final size:21
Alignment explanation
Indices: 48267869--48267920 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
48267859 ACCGAGTTAA
*
48267869 AAGAGTTGAAAGCTCAGTTGC
1 AAGAGTTGACAGCTCAGTTGC
48267890 AAGAGTTGACAGCTCAGTTGC
1 AAGAGTTGACAGCTCAGTTGC
48267911 AAGAGTTGAC
1 AAGAGTTGAC
48267921 GGATAGAGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (21 bp):
AAGAGTTGACAGCTCAGTTGC
Found at i:48272570 original size:40 final size:40
Alignment explanation
Indices: 48272476--48272697 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
48272466 CGGATGATAA
* * * * *
48272476 CGGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATT
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
48272515 CGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTA-ATTC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
48272555 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
48272595 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * * *
48272635 CGGGCTAACTCCCGAAGGCATTTGTGCTAGTGA-TCATATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATC
* * *
48272675 CGGGCTAAGGCCCGATGGC-TTTG
1 CGGGTTAAGTCCCGAAGGCATTTG
48272698 CGAGTGGTTA
Statistics
Matches: 166, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 37 0.22
40 128 0.77
41 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (40 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:48275270 original size:26 final size:26
Alignment explanation
Indices: 48275241--48275309 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
48275231 AAAGCTCTAG
*
48275241 AGAGCCATTAATTAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* * *
48275267 AGAGCCTTTAATCGGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
48275293 AGAGCCA-TATATCAGGA
1 AGAGCCATTA-ATCAGGA
48275310 CACTCATAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
25 2 0.06
26 34 0.94
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:48279235 original size:35 final size:36
Alignment explanation
Indices: 48279172--48279247 Score: 109
Period size: 35 Copynumber: 2.1 Consensus size: 36
48279162 AATATATGTT
* *
48279172 TTAATGTTTTAGTGCGAAATTGTAACTTATCTTTTC
1 TTAATGTTTTAATGCGAAATTGTAACTTATCTTCTC
* *
48279208 TTAATG-TTTAATGTGAAATTGTCACTTATCTTCTC
1 TTAATGTTTTAATGCGAAATTGTAACTTATCTTCTC
48279243 TTAAT
1 TTAAT
48279248 ACATATACAG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 30 0.83
36 6 0.17
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.50
Consensus pattern (36 bp):
TTAATGTTTTAATGCGAAATTGTAACTTATCTTCTC
Found at i:48281628 original size:80 final size:80
Alignment explanation
Indices: 48281544--48281692 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
48281534 TATGGTAACC
* * * *
48281544 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
48281608 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
48281624 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
48281689 CCGG
66 CCGG
48281693 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:48281634 original size:40 final size:38
Alignment explanation
Indices: 48281585--48281692 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
48281575 ATCACGATTT
*
48281585 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
48281625 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
48281665 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
48281693 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:48286604 original size:24 final size:24
Alignment explanation
Indices: 48286574--48286910 Score: 579
Period size: 24 Copynumber: 14.1 Consensus size: 24
48286564 GAATGTGACT
* *
48286574 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
48286598 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48286622 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48286646 AT-GT-AATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48286668 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48286692 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48286716 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48286740 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48286764 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48286788 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48286812 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48286836 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48286860 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48286884 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48286908 ATA
1 ATA
48286911 TGGTCTTTGC
Statistics
Matches: 304, Mismatches: 7, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
22 20 0.07
23 4 0.01
24 280 0.92
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:48294710 original size:24 final size:24
Alignment explanation
Indices: 48294680--48295017 Score: 588
Period size: 24 Copynumber: 14.1 Consensus size: 24
48294670 GAATGTGACT
* *
48294680 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
48294704 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48294728 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48294752 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48294776 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48294800 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48294824 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48294848 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48294872 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48294896 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48294920 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48294944 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48294968 AT-GTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48294991 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48295015 ATA
1 ATA
48295018 TGGTCTTTGC
Statistics
Matches: 305, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
23 22 0.07
24 283 0.93
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:48302272 original size:20 final size:20
Alignment explanation
Indices: 48302249--48302287 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
48302239 TAAATTGTAA
*
48302249 TTCATTCATATAACCAGTAG
1 TTCATCCATATAACCAGTAG
48302269 TTCATCCATATAACCAGTA
1 TTCATCCATATAACCAGTA
48302288 ATTTATCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (20 bp):
TTCATCCATATAACCAGTAG
Found at i:48302532 original size:23 final size:22
Alignment explanation
Indices: 48302479--48302589 Score: 116
Period size: 23 Copynumber: 4.9 Consensus size: 22
48302469 AGCTGAAAAA
48302479 CAGTAAGCTCTATTGAGCTGAAT
1 CAGTAAGCTCTA-TGAGCTGAAT
48302502 -AGTAAGCTCTATCGAGCTGAAT
1 CAGTAAGCTCTAT-GAGCTGAAT
* *
48302524 CAGTAAGCTCCAATGAGCTGAAA
1 CAGTAAGCT-CTATGAGCTGAAT
* **
48302547 CGGTAAGCTCTTACAAGCTGAAT
1 CAGTAAGCTC-TATGAGCTGAAT
*
48302570 CGGTAAGCTCATATGAGCTG
1 CAGTAAGCTC-TATGAGCTG
48302590 TGGTGAGTCT
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.01
22 21 0.28
23 49 0.66
24 3 0.04
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (22 bp):
CAGTAAGCTCTATGAGCTGAAT
Found at i:48302570 original size:46 final size:45
Alignment explanation
Indices: 48302479--48302589 Score: 129
Period size: 46 Copynumber: 2.4 Consensus size: 45
48302469 AGCTGAAAAA
* * *
48302479 CAGTAAGCTCTATTGAGCTGAATAGTAAGCTCTATCGAGCTGAAT
1 CAGTAAGCTCCAATGAGCTGAATAGTAAGCTCTATCAAGCTGAAT
48302524 CAGTAAGCTCCAATGAGCTGAA-ACGGTAAGCTCT-TACAAGCTGAAT
1 CAGTAAGCTCCAATGAGCTGAATA--GTAAGCTCTAT-CAAGCTGAAT
*
48302570 CGGTAAGCT-CATATGAGCTG
1 CAGTAAGCTCCA-ATGAGCTG
48302590 TGGTGAGTCT
Statistics
Matches: 58, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
44 1 0.02
45 23 0.40
46 34 0.59
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (45 bp):
CAGTAAGCTCCAATGAGCTGAATAGTAAGCTCTATCAAGCTGAAT
Found at i:48304617 original size:29 final size:29
Alignment explanation
Indices: 48304584--48304686 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
48304574 CCTTCGAGCT
** * *
48304584 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
48304613 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48304642 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48304671 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
48304687 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:48304626 original size:58 final size:58
Alignment explanation
Indices: 48304555--48304686 Score: 147
Period size: 58 Copynumber: 2.3 Consensus size: 58
48304545 AATTTAAGCC
** * * * * *
48304555 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * * **
48304613 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
48304671 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
48304687 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:48308232 original size:12 final size:12
Alignment explanation
Indices: 48308215--48308242 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
48308205 CAAAATGTTC
48308215 TTTGAAAATAAG
1 TTTGAAAATAAG
48308227 TTTGAAAATAAG
1 TTTGAAAATAAG
48308239 TTTG
1 TTTG
48308243 GGTGAGTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.18, T:0.39
Consensus pattern (12 bp):
TTTGAAAATAAG
Found at i:48310951 original size:12 final size:12
Alignment explanation
Indices: 48310934--48310958 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48310924 TTCATTCATT
48310934 AATCATAAAATA
1 AATCATAAAATA
48310946 AATCATAAAATA
1 AATCATAAAATA
48310958 A
1 A
48310959 GTACTAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
AATCATAAAATA
Found at i:48316919 original size:43 final size:43
Alignment explanation
Indices: 48316848--48317055 Score: 125
Period size: 43 Copynumber: 4.8 Consensus size: 43
48316838 AAAATGCAGC
* * * * *
48316848 TATAGAACTTTACCTTTAACGGCGCTTTTCACAAAAATGCCGA
1 TATAGAACATGACATTTAGCGGCGCTTTTCACAAAAACGCCGA
* * * * * **
48316891 TATAGACCATGACTTTTAGCGGCACTTTTCCCACAAACGCCTC
1 TATAGAACATGACATTTAGCGGCGCTTTTCACAAAAACGCCGA
** *
48316934 TATAGAACATGACATTTAGCGGCGCTTTTC-CTCCAAACG-CTA
1 TATAGAACATGACATTTAGCGGCGCTTTTCAC-AAAAACGCCGA
* * * * * *
48316976 CTATAGATCATGACCTTTAGTGGCGCTTCTCCCACAAACGCC-A
1 -TATAGAACATGACATTTAGCGGCGCTTTTCACAAAAACGCCGA
* * * * *
48317019 CTAAATAAAATGACCTTTAGCGGCACTTTTCCACAAA
1 -TATAGAACATGACATTTAGCGGCGCTTTT-CACAAA
48317056 TACCACTAAA
Statistics
Matches: 130, Mismatches: 30, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
42 3 0.02
43 121 0.93
44 6 0.05
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (43 bp):
TATAGAACATGACATTTAGCGGCGCTTTTCACAAAAACGCCGA
Found at i:48316957 original size:86 final size:86
Alignment explanation
Indices: 48316847--48317133 Score: 224
Period size: 86 Copynumber: 3.3 Consensus size: 86
48316837 AAAAATGCAG
* * * * *
48316847 CTATAGAACTTTACCTTTAACGGCGCTTTTCACAAAAATGCCGA-TATAGACCATGACTTTTAGC
1 CTATAGAACATGACCTTTAGCGGCGCTTTTCACAAAAACG-CGACTATAGACCATGACCTTTAGC
* *
48316911 GGCACTTTTCCCACAAACGCCT
65 GGCACTTCTCCCACAAACGCCA
* ** * * *
48316933 CTATAGAACATGACATTTAGCGGCGCTTTTC-CTCCAAACGCTACTATAGATCATGACCTTTAGT
1 CTATAGAACATGACCTTTAGCGGCGCTTTTCAC-AAAAACGCGACTATAGACCATGACCTTTAGC
*
48316997 GGCGCTTCTCCCACAAACGCCA
65 GGCACTTCTCCCACAAACGCCA
* * * * * * * *
48317019 CTAAATAAAATGACCTTTAGCGGCACTTTTCCACAAATAC-C-ACTAAAGAACACGACCTTTAGC
1 CTATAGAACATGACCTTTAGCGGCGCTTTT-CACAAAAACGCGACTATAGACCATGACCTTTAGC
* * * **
48317082 GACACTT-TGCCTACAAATGCTG
65 GGCACTTCT-CCCACAAACGCCA
* * * *
48317104 CTAAAGAACACGATCTTTAGCGGCGTTTTT
1 CTATAGAACATGACCTTTAGCGGCGCTTTT
48317134 ATAAAAGCGT
Statistics
Matches: 158, Mismatches: 38, Indels: 11
0.76 0.18 0.05
Matches are distributed among these distances:
84 1 0.01
85 59 0.37
86 93 0.59
87 4 0.03
88 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (86 bp):
CTATAGAACATGACCTTTAGCGGCGCTTTTCACAAAAACGCGACTATAGACCATGACCTTTAGCG
GCACTTCTCCCACAAACGCCA
Found at i:48317062 original size:42 final size:42
Alignment explanation
Indices: 48316898--48317127 Score: 181
Period size: 43 Copynumber: 5.4 Consensus size: 42
48316888 CGATATAGAC
* * * *
48316898 CATGACTTTTAGCGGCACTTTTCCCACAAACGCCTCTATAGAA
1 CATGACCTTTAGCGGCACTTTT-CCACAAACACCACTAAAGAA
* * * * * * *
48316941 CATGACATTTAGCGGCGCTTTTCCTCCAAACGCTACTATAGAT
1 CATGACCTTTAGCGGCACTTTTCC-ACAAACACCACTAAAGAA
* * * * *
48316984 CATGACCTTTAGTGGCGCTTCTCCCACAAACGCCACTAAATAA
1 CATGACCTTTAGCGGCACTT-TTCCACAAACACCACTAAAGAA
* *
48317027 AATGACCTTTAGCGGCACTTTTCCACAAATACCACTAAAGAA
1 CATGACCTTTAGCGGCACTTTTCCACAAACACCACTAAAGAA
* * * ** **
48317069 CACGACCTTTAGCGACACTTTGCCTACAAATGCTGCTAAAGAA
1 CATGACCTTTAGCGGCACTTTTCC-ACAAACACCACTAAAGAA
* *
48317112 CACGATCTTTAGCGGC
1 CATGACCTTTAGCGGC
48317128 GTTTTTATAA
Statistics
Matches: 154, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
42 40 0.26
43 111 0.72
44 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (42 bp):
CATGACCTTTAGCGGCACTTTTCCACAAACACCACTAAAGAA
Found at i:48317112 original size:43 final size:42
Alignment explanation
Indices: 48317007--48317125 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
48316997 GGCGCTTCTC
** * * * * *
48317007 CCACAAACGCCACTAAATAAAATGACCTTTAGCGGCACTTTT
1 CCACAAATACCACTAAAGAACACGACCTTTAGCGACACTTTG
48317049 CCACAAATACCACTAAAGAACACGACCTTTAGCGACACTTTG
1 CCACAAATACCACTAAAGAACACGACCTTTAGCGACACTTTG
* ** *
48317091 CCTACAAATGCTGCTAAAGAACACGATCTTTAGCG
1 CC-ACAAATACCACTAAAGAACACGACCTTTAGCG
48317126 GCGTTTTTAT
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
42 37 0.57
43 28 0.43
ACGTcount: A:0.36, C:0.29, G:0.13, T:0.22
Consensus pattern (42 bp):
CCACAAATACCACTAAAGAACACGACCTTTAGCGACACTTTG
Found at i:48317514 original size:21 final size:21
Alignment explanation
Indices: 48317490--48317531 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
48317480 TGCTTTGCTT
* *
48317490 TGCTTCTCTCACTGCTGCCTC
1 TGCTTCCCTCACTGCTACCTC
*
48317511 TGCTTCCCTCGCTGCTACCTC
1 TGCTTCCCTCACTGCTACCTC
48317532 CACTTTAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.45, G:0.14, T:0.36
Consensus pattern (21 bp):
TGCTTCCCTCACTGCTACCTC
Found at i:48319191 original size:46 final size:46
Alignment explanation
Indices: 48319141--48319313 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
48319131 TGGTTGAGCA
* *
48319141 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
48319187 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
48319234 TCCGAACTCGTTGAGTTGAGTCCGATTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
48319280 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48319314 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 57 0.55
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:48319297 original size:93 final size:93
Alignment explanation
Indices: 48319138--48319308 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
48319128 GGATGGTTGA
*
48319138 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
48319203 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
48319231 GCATCCGAACTCGTTGAGTTGAGTCCGATTTCATTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGAG
48319295 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
48319309 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:48323219 original size:93 final size:93
Alignment explanation
Indices: 48323112--48323282 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
48323102 CCCCCTAAGT
* *
48323112 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48323177 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
48323205 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48323270 CGAGTTCGGATGC
66 CGAGTTCGGATGC
48323283 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:48323279 original size:46 final size:46
Alignment explanation
Indices: 48323107--48323279 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
48323097 TAACCCCCCC
* * *
48323107 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
48323153 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
48323201 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
48323246 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
48323280 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:48328715 original size:46 final size:46
Alignment explanation
Indices: 48328648--48328822 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
48328638 AACCCGCCCC
* * *
48328648 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
* * * *
48328694 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCATCCA
* * * **
48328740 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
48328787 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
48328823 CTCAACCATC
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
45 2 0.02
46 66 0.64
47 33 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
Found at i:48328761 original size:93 final size:93
Alignment explanation
Indices: 48328653--48328823 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
48328643 GCCCCTAAGT
* * ***
48328653 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48328718 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
48328746 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48328811 CGAGTTCGGATGC
66 CGAGTTCGGATGC
48328824 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:48335088 original size:46 final size:46
Alignment explanation
Indices: 48335038--48335210 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
48335028 TGGTTGAGCA
48335038 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
48335084 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--TG
* *
48335131 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTGATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT-ATGGATGCAAATG
* * *
48335177 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48335211 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 57 0.54
47 33 0.31
48 2 0.02
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:48335196 original size:93 final size:93
Alignment explanation
Indices: 48335037--48335205 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
48335027 ATGGTTGAGC
* *
48335037 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTG
*
48335102 AGTCCGAGTTCGTGAGATGTAACTAGGT
66 AGTCCAAGTTCGTGAGATGTAACTAGGT
* *
48335130 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTGATGGATGCGAACGCCCGAGCTCGTTGAGTT
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT-ATGGATGCAAACGCCCGAACTCGTTGAGTT
48335194 GAGTCCAAGTTC
65 GAGTCCAAGTTC
48335206 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTG
AGTCCAAGTTCGTGAGATGTAACTAGGT
Found at i:48340012 original size:46 final size:46
Alignment explanation
Indices: 48339945--48340037 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
48339935 TGATTAAAGG
48339945 TAAGGTTTGGTTGTTTAGTGTACTGAATAACTCATTTGCGATCGAT
1 TAAGGTTTGGTTGTTTAGTGTACTGAATAACTCATTTGCGATCGAT
48339991 TAAGGTTTGGTTGTTTAGTGTACTGAATAACTCATTTGCGATCGAT
1 TAAGGTTTGGTTGTTTAGTGTACTGAATAACTCATTTGCGATCGAT
48340037 T
1 T
48340038 TAGTTATAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.24, C:0.11, G:0.24, T:0.42
Consensus pattern (46 bp):
TAAGGTTTGGTTGTTTAGTGTACTGAATAACTCATTTGCGATCGAT
Found at i:48342665 original size:40 final size:40
Alignment explanation
Indices: 48342604--48342688 Score: 152
Period size: 40 Copynumber: 2.1 Consensus size: 40
48342594 CGTTTGTTAT
*
48342604 TGCTTACCTTTTGTAGTGTTTTTCTCATAAACACCGCTAA
1 TGCTTACCTTTTGTAGCGTTTTTCTCATAAACACCGCTAA
*
48342644 TGCTTACCTTTTGTGGCGTTTTTCTCATAAACACCGCTAA
1 TGCTTACCTTTTGTAGCGTTTTTCTCATAAACACCGCTAA
48342684 TGCTT
1 TGCTT
48342689 GAATTTTTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (40 bp):
TGCTTACCTTTTGTAGCGTTTTTCTCATAAACACCGCTAA
Found at i:48343005 original size:20 final size:20
Alignment explanation
Indices: 48342980--48343042 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
48342970 AATATCTTGC
48342980 ATAATTTTGCATAATTTAAT
1 ATAATTTTGCATAATTTAAT
*
48343000 ATAATTAAATT--A-AAATTAAT
1 ATAATT---TTGCATAATTTAAT
48343020 ATAATTTTGCATAATTTTAAT
1 ATAATTTTGCATAA-TTTAAT
48343041 AT
1 AT
48343043 CTTTAAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
17 2 0.06
19 1 0.03
20 21 0.62
21 8 0.24
23 2 0.06
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (20 bp):
ATAATTTTGCATAATTTAAT
Found at i:48343024 original size:40 final size:41
Alignment explanation
Indices: 48342980--48343057 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
48342970 AATATCTTGC
48342980 ATAATTTTGCATAA-TTTAATATAATTAAATTAAAATTAAT
1 ATAATTTTGCATAATTTTAATATAATTAAATTAAAATTAAT
**
48343020 ATAATTTTGCATAATTTTAATATCTTTAAATTAAAATT
1 ATAATTTTGCATAATTTTAATATAATTAAATTAAAATT
48343058 TTAATTTAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
40 14 0.40
41 21 0.60
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (41 bp):
ATAATTTTGCATAATTTTAATATAATTAAATTAAAATTAAT
Found at i:48348811 original size:25 final size:25
Alignment explanation
Indices: 48348769--48348818 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
48348759 CTTTATTATT
* *
48348769 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
48348794 ATCATTATCATGAGTTATATGATTA
1 ATCATTATCAAGAATTATATGATTA
48348819 GTCCTCTGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.42
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:48355704 original size:442 final size:443
Alignment explanation
Indices: 48354834--48355722 Score: 1559
Period size: 442 Copynumber: 2.0 Consensus size: 443
48354824 TGGTTTCTGG
*
48354834 ACCACAAATCTGACAAGGAAAATTTTATTTTTATTAAATTTTTATGGTCTAAAATTTCACAGAAT
1 ACCACAAATCTGACAAGGAAAATTTTATTTTTATTAAATTTTTATAGTCTAAAATTTCACAGAAT
48354899 GATTCTGTGAAAATTTCGTTCGAAAATTTTAACGTTTGGGCACTCAATTTAGTCAAAAGGACTAA
66 GATTCTGTGAAAATTTCGTTCGAAAATTTTAACGTTTGGGCACTCAATTTAGTCAAAAGGACTAA
* ** *
48354964 ATTGTAAAAATTATAAAATACGTAGTAAAAGTGTGTTCTAGTGGAAATTGTGGGCTGTTATAGTT
131 ATTGTAAAAATTATAAAATACATAGTAAAAGTGTCCTCTAGTAGAAATTGTGGGCTGTTATAGTT
* *
48355029 ATGAAAATGGTTCGGCTAAGCTTAAAGTACAAAGAAATTGAATAAATTTCATTTTACGAGCCTAG
196 ATGAAAATGGTTCGGATAAGCTTAAAGTACAAAGAAATTGAATAAATTTCATTTTAAGAGCCTAG
*
48355094 GGGCAAAAGTGTAAATATGAAAAAGTTTAGGGGTAAAAATGTAATTTTTCTATAATATGATTTTC
261 GGGCAAAAGTGTAAATATGAAAAAGTTTAGGGGCAAAAATGTAATTTTTCTATAATATGATTTTC
48355159 GGGTCACAATGAATAATGTGATTAATAAATAAGCTAAATGTGATATTTTAGATCAAGGAAAACAA
326 GGGTCACAATGAATAATGTGATTAATAAATAAGCTAAATGTGATATTTTAGATCAAGGAAAACAA
48355224 GGTTTGGACCTAGAATAGGGGAAAAACGCATATTTGACGGTTAGGTCTTTTTC
391 GGTTTGGACCTAGAATAGGGGAAAAACGCATATTTGACGGTTAGGTCTTTTTC
** * **
48355277 ACCACAAATCTGATGAGGAAAATTTTATTTTTATTATA-TTTTATAGTCTAAAATTTCATGGAAT
1 ACCACAAATCTGACAAGGAAAATTTTATTTTTATTAAATTTTTATAGTCTAAAATTTCACAGAAT
* * *
48355341 GATT-TCGTGAAAATTTCGTTTGAAAATTTTGATGTTTGGGCACTCAATTTAGTCAAAAGGACTA
66 GATTCT-GTGAAAATTTCGTTCGAAAATTTTAACGTTTGGGCACTCAATTTAGTCAAAAGGACTA
48355405 AATTGTAAAAATTATAAAATACATAGTAAAAGTGTCCTCTAGTAGAAATTGTGGGCTGTTATAGT
130 AATTGTAAAAATTATAAAATACATAGTAAAAGTGTCCTCTAGTAGAAATTGTGGGCTGTTATAGT
*
48355470 TATGAAAATGGTTTGGAT-AGTCTTAAAGTACAAAGAAATTGAATAAATTTCATTTTAAGAGCCT
195 TATGAAAATGGTTCGGATAAG-CTTAAAGTACAAAGAAATTGAATAAATTTCATTTTAAGAGCCT
*
48355534 AGGGGCAAAAGTGTAAATATGACAAAGTTTAGGGGCAAAAATGTAATTTTTCTATAATATGATTT
259 AGGGGCAAAAGTGTAAATATGAAAAAGTTTAGGGGCAAAAATGTAATTTTTCTATAATATGATTT
*
48355599 TTGGGTCACAATGAATAATGTGATTAATAAATAAGCTAAATGTGATATTTTAGATCAAGGAAAAC
324 TCGGGTCACAATGAATAATGTGATTAATAAATAAGCTAAATGTGATATTTTAGATCAAGGAAAAC
*
48355664 GAGGTTTGGACCTAGAATAGGGGAAAAACGCATATTTGACGGTTAGGTCTTTTTC
389 AAGGTTTGGACCTAGAATAGGGGAAAAACGCATATTTGACGGTTAGGTCTTTTTC
48355719 ACCA
1 ACCA
48355723 TTTTTGGTAT
Statistics
Matches: 424, Mismatches: 20, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
441 3 0.01
442 386 0.91
443 35 0.08
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (443 bp):
ACCACAAATCTGACAAGGAAAATTTTATTTTTATTAAATTTTTATAGTCTAAAATTTCACAGAAT
GATTCTGTGAAAATTTCGTTCGAAAATTTTAACGTTTGGGCACTCAATTTAGTCAAAAGGACTAA
ATTGTAAAAATTATAAAATACATAGTAAAAGTGTCCTCTAGTAGAAATTGTGGGCTGTTATAGTT
ATGAAAATGGTTCGGATAAGCTTAAAGTACAAAGAAATTGAATAAATTTCATTTTAAGAGCCTAG
GGGCAAAAGTGTAAATATGAAAAAGTTTAGGGGCAAAAATGTAATTTTTCTATAATATGATTTTC
GGGTCACAATGAATAATGTGATTAATAAATAAGCTAAATGTGATATTTTAGATCAAGGAAAACAA
GGTTTGGACCTAGAATAGGGGAAAAACGCATATTTGACGGTTAGGTCTTTTTC
Found at i:48356152 original size:20 final size:20
Alignment explanation
Indices: 48356124--48356161 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
48356114 CTAAGAACTA
48356124 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
48356144 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
48356162 TATATGTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:48358485 original size:35 final size:35
Alignment explanation
Indices: 48358445--48358532 Score: 124
Period size: 35 Copynumber: 2.5 Consensus size: 35
48358435 ATATACTCAA
*
48358445 TCAGATACAAATACAGATTTGGGCTTAAGCCCAT-
1 TCAGATACAAATACAGATTTGGGCCTAAGCCCATC
* * *
48358479 TACAGATACAGATGCAGATTTTGGCCTAAGCCCATC
1 T-CAGATACAAATACAGATTTGGGCCTAAGCCCATC
48358515 TCAGATACAAATACAGAT
1 TCAGATACAAATACAGAT
48358533 GTACAAATTA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
34 1 0.02
35 44 0.96
36 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (35 bp):
TCAGATACAAATACAGATTTGGGCCTAAGCCCATC
Found at i:48368671 original size:20 final size:20
Alignment explanation
Indices: 48368646--48368692 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
48368636 ATTTTGATAT
48368646 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
48368666 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
48368686 ACATGAT
1 ACATGAT
48368693 GTATTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:48368771 original size:25 final size:24
Alignment explanation
Indices: 48368741--48368812 Score: 99
Period size: 25 Copynumber: 2.9 Consensus size: 24
48368731 GGAGGAAGTG
*
48368741 CAAAAAGGGCTATGCCCCAGTTTA
1 CAAAAAGGGCTTTGCCCCAGTTTA
*
48368765 CCGAAAAGGGCTTTTGCCCCAGTTTA
1 -CAAAAAGGGC-TTTGCCCCAGTTTA
*
48368791 TAAAAAGGGCTTTGCCCCAGTT
1 CAAAAAGGGCTTTGCCCCAGTT
48368813 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
24 12 0.29
25 17 0.40
26 13 0.31
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (24 bp):
CAAAAAGGGCTTTGCCCCAGTTTA
Found at i:48368804 original size:24 final size:24
Alignment explanation
Indices: 48368742--48368825 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
48368732 GAGGAAGTGC
* *
48368742 AAAAAGGGCTATGCCCCAGTTTACC
1 AAAAAGGGCTTTGCCCCAGTTTA-T
*
48368767 GAAAAGGGCTTTTGCCCCAGTTTAT
1 AAAAAGGGC-TTTGCCCCAGTTTAT
48368792 AAAAAGGGCTTTGCCCCAG-TTAT
1 AAAAAGGGCTTTGCCCCAGTTTAT
*
48368815 TAAAAGAGGCT
1 AAAAAG-GGCT
48368826 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.17
24 14 0.27
25 16 0.31
26 13 0.25
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAAGGGCTTTGCCCCAGTTTAT
Found at i:48369072 original size:31 final size:31
Alignment explanation
Indices: 48369035--48369124 Score: 83
Period size: 38 Copynumber: 2.7 Consensus size: 31
48369025 GTTTATAGTG
* *
48369035 AAGGCTTTGGGCCAGTAATATGAAATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
*
48369066 AAGGCTTCGGCCCAGTGTTATGAGATATGAATTATGAA
1 AAGGCTTCGGCCCA--G---T-A-ATATGAAATATGAA
48369104 AAGGCTTCGGCCCAGT-ATATG
1 AAGGCTTCGGCCCAGTAATATG
48369125 CTGAGATGGA
Statistics
Matches: 49, Mismatches: 3, Indels: 15
0.73 0.04 0.22
Matches are distributed among these distances:
30 5 0.10
31 12 0.24
33 2 0.04
36 2 0.04
37 1 0.02
38 27 0.55
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:48370052 original size:33 final size:33
Alignment explanation
Indices: 48370010--48370075 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
48370000 TGAAGATGAA
48370010 TTAGATTCTAACTCAGTTTCTGTTATCACTTTT
1 TTAGATTCTAACTCAGTTTCTGTTATCACTTTT
48370043 TTAGATTCTAACTCAGTTTCTGTTATCACTTTT
1 TTAGATTCTAACTCAGTTTCTGTTATCACTTTT
48370076 GACGATGTCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.18, G:0.09, T:0.52
Consensus pattern (33 bp):
TTAGATTCTAACTCAGTTTCTGTTATCACTTTT
Found at i:48376487 original size:89 final size:88
Alignment explanation
Indices: 48376255--48376500 Score: 237
Period size: 89 Copynumber: 2.8 Consensus size: 88
48376245 AACCAAAAAA
* * * * ** * *
48376255 GTTGCAAGTTAATACATTCCCAGATGGTTGTGAATACACAACATATTTGCAGATAAGTGCTTCTA
1 GTTGCAGGTTAATACACTACCAGATGGTTGTGAATACACAACATA-TTGCAAATAAGAACTGCCA
* *
48376320 GATATTGGGTGGATGAACCAACGAT
65 -AAAGTGGGTGGATGAACCAACGAT
* * * * *
48376345 GTTGCAGGTTAATACACTACTAGATAGTTGTGAGTATACAACATATTCTCAAATAAGAACTGCCA
1 GTTGCAGGTTAATACACTACCAGATGGTTGTGAATACACAACATATT-GCAAATAAGAACTGCCA
*
48376410 AAAGTGGTTGGATGAACC-ACTTG-T
65 AAAGTGGGTGGATGAACCAAC--GAT
* * *
48376434 GTTTCAGGTTAATACGCTACCAGATGGTTGTGAATACACAACATGGTTGCAAATAA-AAGCTGCC
1 GTTGCAGGTTAATACACTACCAGATGGTTGTGAATACACAACAT-ATTGCAAATAAGAA-CTGCC
48376498 AAA
64 AAA
48376501 TAATTTGTGG
Statistics
Matches: 127, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
88 4 0.03
89 71 0.56
90 52 0.41
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.28
Consensus pattern (88 bp):
GTTGCAGGTTAATACACTACCAGATGGTTGTGAATACACAACATATTGCAAATAAGAACTGCCAA
AAGTGGGTGGATGAACCAACGAT
Found at i:48378757 original size:46 final size:46
Alignment explanation
Indices: 48378608--48378867 Score: 264
Period size: 46 Copynumber: 5.6 Consensus size: 46
48378598 ATGTCGATTC
* *
48378608 CATGTCCCAGACATGGTCTTACACTAGCTCTCAAATATTCGTGCAGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT-ACATATT-GTGCCGATG
48378657 CATGTCCCAGACATGTCTTACACTAG--C-ACAT-TTCGTAGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATATT-GT-GCCGATG
* * * *
48378701 CATGTTCCAGACATGCCTTACACTGGCT-TACATCTTGATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATATTG-TGCCGATG
* * **
48378747 CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATAT-TGTGCCGATG
* * *
48378793 TCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGGTCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTACATATTGT-GCCGATG
48378841 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
48378868 ACACACACAT
Statistics
Matches: 181, Mismatches: 19, Indels: 25
0.80 0.08 0.11
Matches are distributed among these distances:
43 5 0.03
44 32 0.18
46 62 0.34
47 33 0.18
48 35 0.19
49 14 0.08
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATATTGTGCCGATG
Found at i:48378891 original size:94 final size:91
Alignment explanation
Indices: 48378608--48378871 Score: 304
Period size: 94 Copynumber: 2.8 Consensus size: 91
48378598 ATGTCGATTC
* *
48378608 CATGTCCCAGACATGGTCTTACACTAGCTCTCA-AATATTCGTGCAGATGCATGTCCCAGACATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GT-GT-C-GATGCATGTCCCAGACATG
* *
48378672 TCTTACACTAGCACA-TTTCGTAGCCGATG-
62 TCTTACACTAGCACACTCTCAT-GCCGATGT
* * ** *
48378701 CATGTTCCAGACAT-GCCTTACACTGGCT-TACATCTTGATGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATG-TGTCGATGCATGTCCCAGACATGTC
* *
48378764 TTACACTAGCTCTCGTCTCAATGCCGATGT
64 TTACACTAGCACAC-TCTC-ATGCCGATGT
48378794 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCAGACATGTCT
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-GTCGATGCATGTCCCAGACATGTCT
48378859 TACACTAGCACAC
65 TACACTAGCACAC
48378872 ACACATCGCC
Statistics
Matches: 143, Mismatches: 18, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
90 32 0.22
91 2 0.01
92 25 0.17
93 30 0.21
94 53 0.37
95 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (91 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGTCGATGCATGTCCCAGACATGTCTT
ACACTAGCACACTCTCATGCCGATGT
Found at i:48385510 original size:44 final size:46
Alignment explanation
Indices: 48385417--48385630 Score: 186
Period size: 48 Copynumber: 4.6 Consensus size: 46
48385407 ATGCAGATTC
* * *
48385417 CATGTCACAGACATGGTCTTACATTGGCTCTCAAATATCCGT-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTC--ATAT-CGTAGCCGATG
* *
48385466 CATGTCCCAGACATGTCTTACACTAG-TAT-ATTTCGTAGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATATCGTAGCCGATG
* * * ** *
48385510 CATGT-CCTGAACATGTCTTACACTAGCTCTCGTCTCAAACCCGATG
1 CATGTCCCAG-ACATGTCTTACACTAGCTCTCATATCGTAGCCGATG
* * *
48385556 CCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-ATCGTAGCCGATG
*
48385604 CATGTCTCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
48385631 ACACACACAT
Statistics
Matches: 133, Mismatches: 24, Indels: 19
0.76 0.14 0.11
Matches are distributed among these distances:
43 6 0.05
44 31 0.23
45 2 0.02
46 22 0.17
47 23 0.17
48 35 0.26
49 14 0.11
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATATCGTAGCCGATG
Found at i:48390986 original size:20 final size:20
Alignment explanation
Indices: 48390941--48390990 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
48390931 ATAAAATTTT
*
48390941 GGTATCAATAAAATTCAATA
1 GGTATCGATAAAATTCAATA
* *
48390961 GATATCGATAAAATTTTAA-A
1 GGTATCGATAAAA-TTCAATA
48390981 GGTATCGATA
1 GGTATCGATA
48390991 CTTAATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.46, C:0.08, G:0.14, T:0.32
Consensus pattern (20 bp):
GGTATCGATAAAATTCAATA
Found at i:48411610 original size:15 final size:16
Alignment explanation
Indices: 48411585--48411620 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
48411575 ATTTGAAGAA
48411585 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
48411601 TATT-TTTAAAATTAT
1 TATTATTTAAAATTAT
48411616 TATTA
1 TATTA
48411621 AAATAAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:48411639 original size:25 final size:25
Alignment explanation
Indices: 48411609--48411672 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
48411599 ATTATTTTTA
*
48411609 AAATTATTATTAAAATAAAACTGAT
1 AAATTATTATTAAAATAAAAATGAT
* *
48411634 ATATTAAATTATT--TATAAAAATGAT
1 AAATT--ATTATTAAAATAAAAATGAT
48411659 AAATTA-TATTAAAA
1 AAATTATTATTAAAA
48411673 ATTTATTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 9
0.68 0.11 0.20
Matches are distributed among these distances:
22 4 0.13
23 1 0.03
24 1 0.03
25 18 0.60
27 6 0.20
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (25 bp):
AAATTATTATTAAAATAAAAATGAT
Found at i:48411785 original size:18 final size:18
Alignment explanation
Indices: 48411747--48411786 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
48411737 GCTTTATATT
* **
48411747 AATATTTTAATAAATTTA
1 AATATTTTAAAAAATAAA
48411765 AATATTTTAAAAAATAAA
1 AATATTTTAAAAAATAAA
48411783 AATA
1 AATA
48411787 AAATTTATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AATATTTTAAAAAATAAA
Found at i:48418723 original size:15 final size:15
Alignment explanation
Indices: 48418703--48418732 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
48418693 CCATTGAAGA
48418703 TACAAACACCTCCGC
1 TACAAACACCTCCGC
48418718 TACAAACACCTCCGC
1 TACAAACACCTCCGC
48418733 AGTCATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.47, G:0.07, T:0.13
Consensus pattern (15 bp):
TACAAACACCTCCGC
Found at i:48422376 original size:126 final size:126
Alignment explanation
Indices: 48422150--48422421 Score: 377
Period size: 126 Copynumber: 2.1 Consensus size: 126
48422140 CTAAATAGTA
* *
48422150 ACTACTGTAGCAAAAAAAACGTCCACGTGAGAGCTTTTTTTTGTAAATTTGCTGACAGTGCATCC
1 ACTACTGTAGC-AAAAAAACGTCCACGTGAGAGCTTTTTTTCGTAAATTTGCTGACAGTACATCC
* * *
48422215 TGCTTGAAGCGTTTTGGACACTGTTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTC-AGAT
65 TGCTTGAAGCATTTTGGACACTGTTTATTCAGAAACGTCTTCTCAAAATTATTTTCTCTA-AT
* * * * * *
48422277 ACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTCGTAATTTTGCTTACAGTACATCCT
1 ACTACTGTAGCAAAAAAACGTCCACGTGAGAGCTTTTTTTCGTAAATTTGCTGACAGTACATCCT
* *
48422342 GCTTGAAGTATTTTTGACACTAG-TTATTCAGAAACGTCTTCTCAAAATTATTTTCTCTAAT
66 GCTTGAAGCATTTTGGACACT-GTTTATTCAGAAACGTCTTCTCAAAATTATTTTCTCTAAT
48422403 ACTACTGTAGCAAATAAAA
1 ACTACTGTAGCAAA-AAAA
48422422 AATAAAAAAT
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
126 112 0.89
127 14 0.11
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (126 bp):
ACTACTGTAGCAAAAAAACGTCCACGTGAGAGCTTTTTTTCGTAAATTTGCTGACAGTACATCCT
GCTTGAAGCATTTTGGACACTGTTTATTCAGAAACGTCTTCTCAAAATTATTTTCTCTAAT
Found at i:48422571 original size:65 final size:63
Alignment explanation
Indices: 48422464--48422602 Score: 208
Period size: 66 Copynumber: 2.2 Consensus size: 63
48422454 TAATTACCCC
48422464 TAATAACCCTAAAACCTAAACCCTAATTTAATTGATTCTTTT-AAATTAATAGTTAATTTAAT
1 TAATAACCCTAAAACCTAAACCCTAATTTAATTGATTCTTTTAAAATTAATAGTTAATTTAAT
* * *
48422526 TAATAAACCCTAAAAACCTTAAAGCTTAATTTAATTGATTTTTTTAAAATTAATAGTTAATTTAA
1 TAAT-AACCCT-AAAACC-TAAACCCTAATTTAATTGATTCTTTTAAAATTAATAGTTAATTTAA
48422591 T
63 T
48422592 TAATTAACCCT
1 TAA-TAACCCT
48422603 CAACCTTAAT
Statistics
Matches: 69, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
62 4 0.06
63 6 0.09
64 6 0.09
65 23 0.33
66 29 0.42
67 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.04, T:0.41
Consensus pattern (63 bp):
TAATAACCCTAAAACCTAAACCCTAATTTAATTGATTCTTTTAAAATTAATAGTTAATTTAAT
Found at i:48422586 original size:31 final size:31
Alignment explanation
Indices: 48422487--48422592 Score: 99
Period size: 35 Copynumber: 3.3 Consensus size: 31
48422477 ACCTAAACCC
48422487 TAATTTAATTGATTCTTTT-AAATTAATAGT
1 TAATTTAATTGATTCTTTTAAAATTAATAGT
* * ** *
48422517 TAATTTAATTAATAAACCCTAAAAACCTTAA-AGCT
1 TAATTTAATTGAT--TCTTTTAAAA--TTAATAG-T
*
48422552 TAATTTAATTGATTTTTTTAAAATTAATAGT
1 TAATTTAATTGATTCTTTTAAAATTAATAGT
48422583 TAATTTAATT
1 TAATTTAATT
48422593 AATTAACCCT
Statistics
Matches: 58, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
30 12 0.21
31 15 0.26
32 4 0.07
33 8 0.14
34 2 0.03
35 17 0.29
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.47
Consensus pattern (31 bp):
TAATTTAATTGATTCTTTTAAAATTAATAGT
Found at i:48422661 original size:16 final size:14
Alignment explanation
Indices: 48422634--48422686 Score: 54
Period size: 16 Copynumber: 3.6 Consensus size: 14
48422624 TTCCCTTAAA
48422634 AAACACTAAAACCTT
1 AAAC-CTAAAACCTT
*
48422649 AAACTCTTAAAACCAT
1 AAAC-C-TAAAACCTT
48422665 AAACCT-AAACCTT
1 AAACCTAAAACCTT
*
48422678 AACCCTAAA
1 AAACCTAAA
48422687 CCAATCAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 11 0.34
14 3 0.09
15 6 0.19
16 12 0.38
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (14 bp):
AAACCTAAAACCTT
Found at i:48423046 original size:180 final size:180
Alignment explanation
Indices: 48422744--48423285 Score: 967
Period size: 180 Copynumber: 3.0 Consensus size: 180
48422734 CGCACCCTCA
** *
48422744 AGGAAGCGCTTTGTGCCAACATGGACAAAACGCTCCCCCAGGGATGCGTTTTGCTGACACGTCCA
1 AGGAAGCGCTTTGTGCTGACGTGGACAAAACGCTCCCCCAGGGATGCGTTTTGCTGACACGTCCA
* *
48422809 CTGACTTCGCGTTGACGTGGACGTGCTTTCAGGAAAAATGACCATTTCCGGTAAATAATCAAAAT
66 CTGACTTCGCGCTGACGTGGACGTGCTTTCGGGAAAAATGACCATTTCCGGTAAATAATCAAAAT
48422874 ATCGGTTCATTTCGACAAATAATATTATAAAAGGGCTTTTTTTGTAAATT
131 ATCGGTTCATTTCGACAAATAATATTATAAAAGGGCTTTTTTTGTAAATT
* *
48422924 AGGAAGCGCTTTGTGCTGACGTGGACAAAATGCTCCCCCAGGGATGCATTTTGCTGACACGTCCA
1 AGGAAGCGCTTTGTGCTGACGTGGACAAAACGCTCCCCCAGGGATGCGTTTTGCTGACACGTCCA
*
48422989 CTGACTTCGCGCTGACGTGGACGTGCTTTCGGGAAAAATGACCATTTCCTGTAAATAATCAAAAT
66 CTGACTTCGCGCTGACGTGGACGTGCTTTCGGGAAAAATGACCATTTCCGGTAAATAATCAAAAT
48423054 ATCGGTTCATTTCGACAAATAATATTATAAAAGGGCTTTTTTTGTAAATT
131 ATCGGTTCATTTCGACAAATAATATTATAAAAGGGCTTTTTTTGTAAATT
* *
48423104 AGGAAGCACTTTGTGCTGACGTGGACAAAACGCTCCCCCAAGGATGCGTTTTGCTGACACGTCCA
1 AGGAAGCGCTTTGTGCTGACGTGGACAAAACGCTCCCCCAGGGATGCGTTTTGCTGACACGTCCA
* *
48423169 TTGACTTCGCGCAGACGTGGACGTGCTTTCGGGAAAAATGACCATTTCCGGTAAATAATCAAAAT
66 CTGACTTCGCGCTGACGTGGACGTGCTTTCGGGAAAAATGACCATTTCCGGTAAATAATCAAAAT
*
48423234 ATCGGTTCATTTTGACAAATAATATTATAAAAGGGCTTTTTTTGTAAATT
131 ATCGGTTCATTTCGACAAATAATATTATAAAAGGGCTTTTTTTGTAAATT
48423284 AG
1 AG
48423286 CCAAAAATAT
Statistics
Matches: 346, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
180 346 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (180 bp):
AGGAAGCGCTTTGTGCTGACGTGGACAAAACGCTCCCCCAGGGATGCGTTTTGCTGACACGTCCA
CTGACTTCGCGCTGACGTGGACGTGCTTTCGGGAAAAATGACCATTTCCGGTAAATAATCAAAAT
ATCGGTTCATTTCGACAAATAATATTATAAAAGGGCTTTTTTTGTAAATT
Found at i:48424463 original size:21 final size:20
Alignment explanation
Indices: 48424436--48424511 Score: 73
Period size: 21 Copynumber: 3.8 Consensus size: 20
48424426 ATATTCAAAT
* *
48424436 AATAATAACAAAATACAACA
1 AATAATAAAAAAATAAAACA
*
48424456 ATATAATAATAAAATAATAACA
1 A-ATAATAAAAAAATAA-AACA
*
48424478 AAAAATAAAAAAATAAAAC-
1 AATAATAAAAAAATAAAACA
* *
48424497 AGTAACAAAAAAATA
1 AATAATAAAAAAATA
48424512 GCAACATTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
19 12 0.26
20 4 0.09
21 26 0.55
22 5 0.11
ACGTcount: A:0.74, C:0.08, G:0.01, T:0.17
Consensus pattern (20 bp):
AATAATAAAAAAATAAAACA
Found at i:48426215 original size:21 final size:22
Alignment explanation
Indices: 48426175--48426221 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
48426165 TTCAGTTCAA
48426175 TTATGTTCATTAACAAGCTCGT
1 TTATGTTCATTAACAAGCTCGT
* * *
48426197 TTATGTTCGTTTA-AAGCTCTT
1 TTATGTTCATTAACAAGCTCGT
48426218 TTAT
1 TTAT
48426222 TGTTATCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.23, C:0.15, G:0.13, T:0.49
Consensus pattern (22 bp):
TTATGTTCATTAACAAGCTCGT
Found at i:48432231 original size:62 final size:62
Alignment explanation
Indices: 48432156--48432280 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
48432146 CCTTATGTTG
*
48432156 CAATGTCTTTTGATCTATTAAGTCTAAGTTTACTTAGGCACTTGAGTTTTTGCCTTTGATAT
1 CAATGTCTTTTGATCTATTAAGTCCAAGTTTACTTAGGCACTTGAGTTTTTGCCTTTGATAT
*
48432218 CAATGTCTTTTGATCTATTAAGTCCAAGTTTACTTAGGCACTTGAGTTTTTTCCTTTGATAT
1 CAATGTCTTTTGATCTATTAAGTCCAAGTTTACTTAGGCACTTGAGTTTTTGCCTTTGATAT
48432280 C
1 C
48432281 CACCTAGTAC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.22, C:0.16, G:0.15, T:0.46
Consensus pattern (62 bp):
CAATGTCTTTTGATCTATTAAGTCCAAGTTTACTTAGGCACTTGAGTTTTTGCCTTTGATAT
Found at i:48433106 original size:13 final size:13
Alignment explanation
Indices: 48433088--48433114 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
48433078 AAAGATGGGT
48433088 GGCCATTTGCATA
1 GGCCATTTGCATA
48433101 GGCCATTTGCATA
1 GGCCATTTGCATA
48433114 G
1 G
48433115 TTTACCCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (13 bp):
GGCCATTTGCATA
Found at i:48437572 original size:62 final size:62
Alignment explanation
Indices: 48437501--48437718 Score: 260
Period size: 62 Copynumber: 3.5 Consensus size: 62
48437491 GAACCTCACA
* ** *
48437501 GCCAAGGACACGGGTGTGTGCTTAGGCCGTGTAACTCACTATTCACTGTATGAAATCATACAG
1 GCCAGGGACACGGGTGTGTGCCCAGGCCGTGTAACTCACTATTCACTATATGAAATCATAC-G
* * *
48437564 G-CAGGGACACGGGTGCGTGCCCAGGTCGTGTAACTCACTATTCATTATATGAAATCATACG
1 GCCAGGGACACGGGTGTGTGCCCAGGCCGTGTAACTCACTATTCACTATATGAAATCATACG
* * * * * *
48437625 GCCAGGGACACGGGTGTGTTCCCAGGCCGTGTAACTCACTGTTCA-TGGTATAAAACCACACG
1 GCCAGGGACACGGGTGTGTGCCCAGGCCGTGTAACTCACTATTCACT-ATATGAAATCATACG
* * *
48437687 GCCAGGGACATGGGCGTGTGCCCAGGCTGTGT
1 GCCAGGGACACGGGTGTGTGCCCAGGCCGTGT
48437719 GATGCACTGT
Statistics
Matches: 134, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
61 3 0.02
62 130 0.97
63 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (62 bp):
GCCAGGGACACGGGTGTGTGCCCAGGCCGTGTAACTCACTATTCACTATATGAAATCATACG
Found at i:48440497 original size:2 final size:2
Alignment explanation
Indices: 48440490--48440524 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
48440480 TCACATAATT
48440490 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
48440525 TTATTTATGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:48440846 original size:18 final size:18
Alignment explanation
Indices: 48440825--48440863 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
48440815 TTTAATAAAA
*
48440825 TTATTT-AATATTATAATT
1 TTATTTCAATAATA-AATT
48440843 TTATTTCAATAATAAATT
1 TTATTTCAATAATAAATT
48440861 TTA
1 TTA
48440864 ACATTAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTATTTCAATAATAAATT
Found at i:48440864 original size:32 final size:33
Alignment explanation
Indices: 48440787--48440870 Score: 79
Period size: 32 Copynumber: 2.6 Consensus size: 33
48440777 ATTTAGCCAT
*
48440787 ATAATAAATTATTAATA--AAATTTATTATTTTA
1 ATAATAAATT-TTAATATTAAATTTATTATTTCA
*
48440819 ATAA-AATTATTTAATATTATAA-TT-TTATTTCA
1 ATAATAAAT-TTTAATATTA-AATTTATTATTTCA
*
48440851 ATAATAAATTTTAACATTAA
1 ATAATAAATTTTAATATTAA
48440871 CATCAATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
31 10 0.23
32 25 0.58
33 6 0.14
34 2 0.05
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (33 bp):
ATAATAAATTTTAATATTAAATTTATTATTTCA
Found at i:48441016 original size:23 final size:23
Alignment explanation
Indices: 48440973--48441019 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
48440963 TTTAGTAATA
*
48440973 AATATTTTATAGAATAAAATATG
1 AATATTTTATAAAATAAAATATG
*
48440996 AATATTTTATTAAAAT-GAATATG
1 AATATTTTA-TAAAATAAAATATG
48441019 A
1 A
48441020 GTTTTTGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (23 bp):
AATATTTTATAAAATAAAATATG
Found at i:48448844 original size:87 final size:86
Alignment explanation
Indices: 48448735--48448898 Score: 222
Period size: 87 Copynumber: 1.9 Consensus size: 86
48448725 TACATGCATA
* *
48448735 AGGTTGAGTTCTCACTCTTAATGAATTCATATCCCAG-GATTTGGATGGTCCTATTGAGACGGAC
1 AGGTTGAGTTATCACTCTTAATGAATTCATATCCCAGAG-TTTGGATGATCCTATTGAGACGGAC
48448799 TTGATGAATTCACTGACATGTG
65 TTGATGAATTCACTGACATGTG
* * * * * **
48448821 AGGTTGAGTTTATTACTCTTAATGAGTTCATATTCCAGAGTTTGGGTGATCCTATTGAGATGGGT
1 AGGTTGAG-TTATCACTCTTAATGAATTCATATCCCAGAGTTTGGATGATCCTATTGAGACGGAC
48448886 TTGATGAATTCAC
65 TTGATGAATTCAC
48448899 CGAACTTAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
86 8 0.12
87 58 0.87
88 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.37
Consensus pattern (86 bp):
AGGTTGAGTTATCACTCTTAATGAATTCATATCCCAGAGTTTGGATGATCCTATTGAGACGGACT
TGATGAATTCACTGACATGTG
Found at i:48449911 original size:55 final size:56
Alignment explanation
Indices: 48449804--48449921 Score: 148
Period size: 55 Copynumber: 2.1 Consensus size: 56
48449794 AAGTATTGTG
* * *** *
48449804 TTAAACTTGGGGGGGCAACATTCACTACACGATTATATTGATTAAGGTAAATTTGCT
1 TTAAACTT-GGGGGGCAACATTCACTACACGATTACATTGATCAAAACAAATTTACT
*
48449861 TTAAACTT-GGGGGCAACTTTCACTACACGATTACATTGATCAAAACAAATTTACT
1 TTAAACTTGGGGGGCAACATTCACTACACGATTACATTGATCAAAACAAATTTACT
48449916 TCTAAA
1 T-TAAA
48449922 GTAGTGGTTC
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
55 41 0.77
56 4 0.08
57 8 0.15
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (56 bp):
TTAAACTTGGGGGGCAACATTCACTACACGATTACATTGATCAAAACAAATTTACT
Found at i:48450999 original size:15 final size:16
Alignment explanation
Indices: 48450962--48451000 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
48450952 AAAAAGCTAC
48450962 TTTTAAAAATATATAT
1 TTTTAAAAATATATAT
* *
48450978 TTATAAATATAT-TAT
1 TTTTAAAAATATATAT
48450993 TTTTAAAA
1 TTTTAAAA
48451001 TGGATGGAGC
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TTTTAAAAATATATAT
Found at i:48459685 original size:24 final size:24
Alignment explanation
Indices: 48459629--48459784 Score: 100
Period size: 24 Copynumber: 6.3 Consensus size: 24
48459619 TTCAACTTAC
*
48459629 AGGCTTCCCAGATGACTCGCCAC-A
1 AGGCTT-CCAGATGACTTGCCACAA
* *
48459653 AGGTTTTCTAGATGACTTGCCACAA
1 AGG-CTTCCAGATGACTTGCCACAA
* * * *
48459678 AGGCTTCTAAATGTCTTACCACAA
1 AGGCTTCCAGATGACTTGCCACAA
* * *
48459702 AGGCTTTCCAAATGTCTTGCCATAA
1 AGGC-TTCCAGATGACTTGCCACAA
** *
48459727 AGGCTTCCTA-AAAAATTCGCCACAA
1 AGGCTTCC-AGATGACTT-GCCACAA
* **
48459752 AGGCTTTCCAGATGTCTTGCCATGA
1 AGGC-TTCCAGATGACTTGCCACAA
48459777 AGGCTTCC
1 AGGCTTCC
48459785 CAAACAATTC
Statistics
Matches: 104, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
24 49 0.47
25 48 0.46
26 7 0.07
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (24 bp):
AGGCTTCCAGATGACTTGCCACAA
Found at i:48459728 original size:25 final size:25
Alignment explanation
Indices: 48459668--48459788 Score: 113
Period size: 25 Copynumber: 4.9 Consensus size: 25
48459658 TTCTAGATGA
*
48459668 CTTGCCACAAAGGC-TTCTAAATGT
1 CTTGCCACAAAGGCTTTCCAAATGT
*
48459692 CTTACCACAAAGGCTTTCCAAATGT
1 CTTGCCACAAAGGCTTTCCAAATGT
* **
48459717 CTTGCCATAAAGGC-TTCCTAAAAAAT
1 CTTGCCACAAAGGCTTTCC--AAATGT
* *
48459743 -TCGCCACAAAGGCTTTCCAGATGT
1 CTTGCCACAAAGGCTTTCCAAATGT
** *
48459767 CTTGCCATGAAGGCTTCCCAAA
1 CTTGCCACAAAGGCTTTCCAAA
48459789 CAATTCACCA
Statistics
Matches: 76, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
24 20 0.26
25 48 0.63
26 8 0.11
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (25 bp):
CTTGCCACAAAGGCTTTCCAAATGT
Found at i:48459756 original size:50 final size:50
Alignment explanation
Indices: 48459695--48459808 Score: 183
Period size: 50 Copynumber: 2.3 Consensus size: 50
48459685 TAAATGTCTT
*
48459695 ACCACAAAGGCTTTCCAAATGTCTTGCCATAAAGGCTTCCTAAAAAATTC
1 ACCACAAAGGCTTTCCAAATGTCTTGCCATAAAGGCTTCCCAAAAAATTC
* * * *
48459745 GCCACAAAGGCTTTCCAGATGTCTTGCCATGAAGGCTTCCCAAACAATTC
1 ACCACAAAGGCTTTCCAAATGTCTTGCCATAAAGGCTTCCCAAAAAATTC
48459795 ACCACAAAGGCTTT
1 ACCACAAAGGCTTT
48459809 GTTTGGTTTG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 58 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (50 bp):
ACCACAAAGGCTTTCCAAATGTCTTGCCATAAAGGCTTCCCAAAAAATTC
Found at i:48460256 original size:33 final size:33
Alignment explanation
Indices: 48460217--48460280 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
48460207 CATAATGGAT
48460217 GCATTTACACAGATTTCACTCATAATCTTAAAC
1 GCATTTACACAGATTTCACTCATAATCTTAAAC
*
48460250 GCATTTACATAGATTTCACTCATAATCTTAA
1 GCATTTACACAGATTTCACTCATAATCTTAA
48460281 CAGACTCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (33 bp):
GCATTTACACAGATTTCACTCATAATCTTAAAC
Found at i:48461242 original size:16 final size:16
Alignment explanation
Indices: 48461221--48461251 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
48461211 AAAACTATGG
48461221 GGCGTACTCTTTCTTA
1 GGCGTACTCTTTCTTA
48461237 GGCGTACTCTTTCTT
1 GGCGTACTCTTTCTT
48461252 CACTTGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.10, C:0.26, G:0.19, T:0.45
Consensus pattern (16 bp):
GGCGTACTCTTTCTTA
Found at i:48463131 original size:41 final size:41
Alignment explanation
Indices: 48463086--48463203 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
48463076 TGAAAGATAA
48463086 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
48463127 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
48463157 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
48463198 ATGTAG
1 ATGTAG
48463204 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:48463142 original size:71 final size:71
Alignment explanation
Indices: 48463054--48463217 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48463044 GAGATGTATC
48463054 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48463119 AGGACA
66 AGGACA
48463125 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48463190 AGGACA
66 AGGACA
48463196 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
48463218 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:48470713 original size:41 final size:41
Alignment explanation
Indices: 48470668--48470785 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
48470658 TGAAAGATAA
48470668 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
48470709 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
48470739 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
48470780 ATGTAG
1 ATGTAG
48470786 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:48470724 original size:71 final size:71
Alignment explanation
Indices: 48470636--48470799 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48470626 GAGATGTATC
48470636 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48470701 AGGACA
66 AGGACA
48470707 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48470772 AGGACA
66 AGGACA
48470778 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
48470800 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:48477330 original size:37 final size:37
Alignment explanation
Indices: 48477283--48477354 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
48477273 CTAACTCCAT
*
48477283 CACCCTACTAAACTATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
48477320 CACCCTACTAAACCATCCACTACCTCCATCACCCC
1 CACCCTACTAAACCATCCACTACCTCCATCACCCC
48477355 TACTAACTCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.29, C:0.53, G:0.00, T:0.18
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Done.