Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 169 of 378
Found at i:49251122 original size:26 final size:26
Alignment explanation
Indices: 49251091--49251198 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
49251081 TGAAATTCCC
*
49251091 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
49251117 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
49251143 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
49251169 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
49251195 ATCA
1 ATCA
49251199 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:49257289 original size:46 final size:46
Alignment explanation
Indices: 49257234--49257414 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
49257224 TAGGATGGTT
49257234 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
49257280 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
49257326 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
49257373 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49257415 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:49257395 original size:93 final size:93
Alignment explanation
Indices: 49257236--49257406 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
49257226 GGATGGTTGA
* *
49257236 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
49257301 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
49257329 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
49257394 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
49257407 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:49260376 original size:15 final size:15
Alignment explanation
Indices: 49260356--49260424 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
49260346 GTATCTTGGG
49260356 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
49260371 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
49260386 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
49260401 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
49260416 TTTCTTTAT
1 TTTCTTTAT
49260425 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:49260425 original size:30 final size:30
Alignment explanation
Indices: 49260347--49260434 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
49260337 CATAGTATCG
* * * *
49260347 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
49260377 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
49260407 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
49260435 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:49262868 original size:46 final size:46
Alignment explanation
Indices: 49262813--49262993 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
49262803 TAGGATGGTT
49262813 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
49262859 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
49262905 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
49262952 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49262994 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:49262974 original size:93 final size:93
Alignment explanation
Indices: 49262815--49262985 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
49262805 GGATGGTTGA
* *
49262815 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
49262880 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
49262908 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
49262973 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
49262986 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:49266569 original size:26 final size:26
Alignment explanation
Indices: 49266540--49266647 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
49266530 TAAAATTCCC
*
49266540 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
49266566 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
49266592 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
49266618 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
49266644 ATCA
1 ATCA
49266648 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:49268390 original size:2 final size:2
Alignment explanation
Indices: 49268383--49268425 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
49268373 TGTATGTGAT
49268383 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
49268425 T
1 T
49268426 TCTTACTAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:49271419 original size:27 final size:27
Alignment explanation
Indices: 49271378--49271438 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
49271368 TGATCTATAA
*
49271378 AATTTCAAATTAATCTCATTCAAACAC
1 AATTTCAAATAAATCTCATTCAAACAC
49271405 AATTTCAAATAAATCTCATTCAAACAC
1 AATTTCAAATAAATCTCATTCAAACAC
49271432 AATTTCA
1 AATTTCA
49271439 TTCAATTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (27 bp):
AATTTCAAATAAATCTCATTCAAACAC
Found at i:49271428 original size:15 final size:16
Alignment explanation
Indices: 49271392--49271443 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 16
49271382 TCAAATTAAT
49271392 CTCATTCAAACACAA-
1 CTCATTCAAACACAAT
*
49271407 -T--TTCAAATA-AAT
1 CTCATTCAAACACAAT
49271419 CTCATTCAAACACAAT
1 CTCATTCAAACACAAT
*
49271435 TTCATTCAA
1 CTCATTCAA
49271444 TTTAACCCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 9
0.71 0.07 0.22
Matches are distributed among these distances:
11 2 0.07
12 7 0.24
13 1 0.03
14 1 0.03
15 7 0.24
16 11 0.38
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (16 bp):
CTCATTCAAACACAAT
Found at i:49283252 original size:45 final size:44
Alignment explanation
Indices: 49283185--49283287 Score: 179
Period size: 45 Copynumber: 2.3 Consensus size: 44
49283175 ATTTTAAATA
49283185 ATAATATATTAATATATTTCATATTAAAATGATATAATAATAACAT
1 ATAATATATT--TATATTTCATATTAAAATGATATAATAATAACAT
49283231 ATAATATATTTCATATTTCATATTAAAATGATATAATAATAACAT
1 ATAATATATTT-ATATTTCATATTAAAATGATATAATAATAACAT
49283276 ATAATATATTTA
1 ATAATATATTTA
49283288 ATAATATAGA
Statistics
Matches: 56, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
44 2 0.04
45 44 0.79
46 10 0.18
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (44 bp):
ATAATATATTTATATTTCATATTAAAATGATATAATAATAACAT
Found at i:49286835 original size:2 final size:2
Alignment explanation
Indices: 49286828--49286863 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
49286818 TCATATAGAA
*
49286828 AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
49286864 TATTTAGACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:49286841 original size:12 final size:12
Alignment explanation
Indices: 49286820--49286862 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
49286810 TCCCAACTTC
*
49286820 ATATAGAAATAT
1 ATATATAAATAT
49286832 ATATATAAATAT
1 ATATATAAATAT
*
49286844 ATATATATATAT
1 ATATATAAATAT
49286856 ATATATA
1 ATATATA
49286863 TTATTTAGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (12 bp):
ATATATAAATAT
Found at i:49287869 original size:12 final size:12
Alignment explanation
Indices: 49287844--49287879 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
49287834 TTCTAAAATA
*
49287844 AAATTTAAATTT
1 AAATTTAAACTT
49287856 AAATTTAAACTT
1 AAATTTAAACTT
*
49287868 AAACTTAAACTT
1 AAATTTAAACTT
49287880 TTTATTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
AAATTTAAACTT
Found at i:49288851 original size:17 final size:16
Alignment explanation
Indices: 49288788--49288852 Score: 62
Period size: 14 Copynumber: 4.0 Consensus size: 16
49288778 CCTAAAAAAA
*
49288788 TTAAAAATTATAATTT
1 TTAAAAAATATAATTT
49288804 TT-AAAAA-ATAATTT
1 TTAAAAAATATAATTT
*
49288818 TTAACAAGATTATAATTTT
1 TTAA-AA-AATATAA-TTT
*
49288837 TTAAAAAATAAAATTT
1 TTAAAAAATATAATTT
49288853 CTTTAAAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
14 9 0.22
15 5 0.12
16 7 0.17
17 6 0.15
18 6 0.15
19 7 0.17
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (16 bp):
TTAAAAAATATAATTT
Found at i:49289387 original size:17 final size:18
Alignment explanation
Indices: 49289362--49289398 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
49289352 AAATTAAAAA
49289362 TTAAAA-ATAAAAATAATT
1 TTAAAATATAAAAA-AATT
49289380 TTAAAATATAAAAAAATT
1 TTAAAATATAAAAAAATT
49289398 T
1 T
49289399 CCAAATTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAAATATAAAAAAATT
Found at i:49289404 original size:18 final size:19
Alignment explanation
Indices: 49289364--49289404 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
49289354 ATTAAAAATT
*
49289364 AAAA-ATAAAAATAATTTT
1 AAAATATAAAAATAATTTC
49289382 AAAATATAAAAA-AATTTC
1 AAAATATAAAAATAATTTC
*
49289400 CAAAT
1 AAAAT
49289405 TTCAATGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAATATAAAAATAATTTC
Found at i:49289901 original size:27 final size:26
Alignment explanation
Indices: 49289861--49289916 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
49289851 ATTTTTTTTG
*
49289861 AAAATTTTATGTTTTAATTTAAAATATA
1 AAAATATTATG-TTTAATTTAAAA-ATA
*
49289889 AAAATATTA-GTTTATTTTAAAAATA
1 AAAATATTATGTTTAATTTAAAAATA
49289914 AAA
1 AAA
49289917 TTTTTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 6 0.23
26 11 0.42
27 1 0.04
28 8 0.31
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.45
Consensus pattern (26 bp):
AAAATATTATGTTTAATTTAAAAATA
Found at i:49289931 original size:13 final size:14
Alignment explanation
Indices: 49289902--49289938 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
49289892 ATATTAGTTT
49289902 ATTTTAAAAATAAA
1 ATTTTAAAAATAAA
*
49289916 ATTTTTAAAA-AAA
1 ATTTTAAAAATAAA
49289929 A-TTTAAAAAT
1 ATTTTAAAAAT
49289939 TGTTTATGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
12 7 0.35
13 4 0.20
14 9 0.45
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATTTTAAAAATAAA
Found at i:49290893 original size:9 final size:8
Alignment explanation
Indices: 49290870--49290899 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
49290860 AATATTATAA
49290870 AAAATATT
1 AAAATATT
49290878 AAAATATT
1 AAAATATT
49290886 AAATATATT
1 AAA-ATATT
49290895 AAAAT
1 AAAAT
49290900 GACAAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
AAAATATT
Found at i:49290937 original size:19 final size:20
Alignment explanation
Indices: 49290913--49290954 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
49290903 AAAATATAAA
*
49290913 AAAATTATAAATAATT-ATT
1 AAAATTATAAAAAATTAATT
*
49290932 AAAATTTTAAAAAATTAATT
1 AAAATTATAAAAAATTAATT
49290952 AAA
1 AAA
49290955 TAAAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAATTATAAAAAATTAATT
Found at i:49290955 original size:19 final size:19
Alignment explanation
Indices: 49290863--49290954 Score: 66
Period size: 18 Copynumber: 5.0 Consensus size: 19
49290853 AATTTTGAAT
49290863 ATTATAAAAAA-TATTAAA
1 ATTATAAAAAATTATTAAA
* *
49290881 A-TATTAAATA-TATTAAA
1 ATTATAAAAAATTATTAAA
* * * **
49290898 ATGACAAAATA-TAAAAAA
1 ATTATAAAAAATTATTAAA
*
49290916 ATTATAAATAATTATTAAA
1 ATTATAAAAAATTATTAAA
*
49290935 ATTTTAAAAAATTAATTAAA
1 ATTATAAAAAATT-ATTAAA
49290955 TAAAAATTAA
Statistics
Matches: 56, Mismatches: 15, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
17 15 0.27
18 19 0.34
19 16 0.29
20 6 0.11
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (19 bp):
ATTATAAAAAATTATTAAA
Found at i:49291846 original size:20 final size:18
Alignment explanation
Indices: 49291805--49291843 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
49291795 TTTATGATTA
*
49291805 TTTA-TAATTTTTACCAT
1 TTTAGTAATTTTTACAAT
49291822 TTTAGTAATATTTTACAAT
1 TTTAGTAAT-TTTTACAAT
49291841 TTT
1 TTT
49291844 TAGAATTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 4 0.21
19 11 0.58
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTAGTAATTTTTACAAT
Found at i:49291981 original size:20 final size:22
Alignment explanation
Indices: 49291956--49291998 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
49291946 ATATTTATAA
*
49291956 TTTTTACCATT-TT-TAATATT
1 TTTTTACAATTCTTATAATATT
49291976 TTTTTACAATTCTTATAATATT
1 TTTTTACAATTCTTATAATATT
49291998 T
1 T
49291999 GAAATTTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 2 0.10
22 8 0.40
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTTACAATTCTTATAATATT
Found at i:49294682 original size:19 final size:19
Alignment explanation
Indices: 49294658--49294698 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
49294648 TTGTTAGATT
49294658 TGATTTAGGGATTAAATTG
1 TGATTTAGGGATTAAATTG
*
49294677 TGATTTAGGGATTGAATTG
1 TGATTTAGGGATTAAATTG
49294696 TGA
1 TGA
49294699 AAATGTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.41
Consensus pattern (19 bp):
TGATTTAGGGATTAAATTG
Found at i:49295405 original size:35 final size:35
Alignment explanation
Indices: 49295327--49295411 Score: 143
Period size: 35 Copynumber: 2.4 Consensus size: 35
49295317 GATTAGCTCT
*
49295327 TATGAGCAATAGTGTGTTTCAGATGGTTTAACTCG
1 TATGAGCATTAGTGTGTTTCAGATGGTTTAACTCG
*
49295362 TATGAGCATTAGTGTGTTTCAGATGGTTTAATTCG
1 TATGAGCATTAGTGTGTTTCAGATGGTTTAACTCG
*
49295397 TATGAGCATTGGTGT
1 TATGAGCATTAGTGT
49295412 ATTTTGGATG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.24, C:0.09, G:0.27, T:0.40
Consensus pattern (35 bp):
TATGAGCATTAGTGTGTTTCAGATGGTTTAACTCG
Found at i:49296397 original size:54 final size:53
Alignment explanation
Indices: 49296311--49296439 Score: 161
Period size: 54 Copynumber: 2.4 Consensus size: 53
49296301 CAAGTCAGTT
*
49296311 AGTTACATGGCCTAGCATACGGCTTGGAACACGGGCA-TGTGGGGCTATTTCGAG
1 AGTTACA-GGCCTAGCACACGGCTTGGAACACGGG-AGTGTGGGGCTATTTCGAG
* * * *
49296365 AGTTACACGGCCTAGCACATGGTTTGGCACACGGGAGTGTGGGGTTATTTCGAG
1 AGTTACA-GGCCTAGCACACGGCTTGGAACACGGGAGTGTGGGGCTATTTCGAG
* *
49296419 AGTTACAGGCCTGGTACACGG
1 AGTTACAGGCCTAGCACACGG
49296440 GTGTGTGACA
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
53 12 0.18
54 53 0.82
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (53 bp):
AGTTACAGGCCTAGCACACGGCTTGGAACACGGGAGTGTGGGGCTATTTCGAG
Found at i:49296459 original size:54 final size:54
Alignment explanation
Indices: 49296348--49296459 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 54
49296338 AACACGGGCA
* * * *
49296348 TGTGGGGCTATTTCGAGAGTTACACGGCCTAGCACATGGTTTGGCACACGGGAG
1 TGTGGGGCTATTTCGAGAGTTACACGGCCTAGCACAGGGTGTGGCACACAGCAG
* * * *
49296402 TGTGGGGTTATTTCGAGAGTTACA-GGCCTGGTACACGGGTGTGTG-ACACAGCCG
1 TGTGGGGCTATTTCGAGAGTTACACGGCCTAGCACA-GGGTGTG-GCACACAGCAG
49296456 TGTG
1 TGTG
49296460 ACCCTATTCA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
53 9 0.19
54 38 0.79
55 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.37, T:0.26
Consensus pattern (54 bp):
TGTGGGGCTATTTCGAGAGTTACACGGCCTAGCACAGGGTGTGGCACACAGCAG
Found at i:49298320 original size:45 final size:44
Alignment explanation
Indices: 49298166--49298478 Score: 231
Period size: 45 Copynumber: 6.7 Consensus size: 44
49298156 TTTGTGTGCT
49298166 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAG-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-C-C-TTATGAGAAGCC
* * * **
49298212 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTATGACGAGTGGT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTATGA-GA-AGCC
*
49298260 AGTGTAAAACATGTCTGGGACATGCATCGGCCTTA-GACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTATGA-G-AAGCC
* * *
49298305 AGTGTAAGACATGTCTGGGACATGCATCGG-C-TACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTATGAGA--AGCC
** * *
49298349 AGTGTAAGACCATGTCTGGGACATGGCATCGGAACGGATATGCGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG--C-CTTATGAGA-AGCC
* *
49298399 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATGATGATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCT-TATGA-GA-AGCC
49298448 AGTGTAAGACCATGT-TCGGGACATGGCATCG
1 AGTGTAAGA-CATGTCT-GGGACAT-GCATCG
49298479 ACAACTGACC
Statistics
Matches: 221, Mismatches: 27, Indels: 35
0.78 0.10 0.12
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 14 0.06
45 54 0.24
46 28 0.13
47 29 0.13
48 20 0.09
49 34 0.15
50 33 0.15
51 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTTATGAGAAGCC
Found at i:49301973 original size:40 final size:40
Alignment explanation
Indices: 49301886--49302092 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
49301876 TATTCGAATG
* *
49301886 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
49301926 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
49301966 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
49302005 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
49302045 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
49302085 ATATCCGG
1 ATATCCGG
49302093 TTAAATTCGA
Statistics
Matches: 146, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
39 37 0.25
40 101 0.69
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:49302025 original size:79 final size:80
Alignment explanation
Indices: 49301886--49302105 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 80
49301876 TATTCGAATG
* * **
49301886 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGC
*
49301950 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGATACT
* *
49301966 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGG
49302028 CATTTGTGCGAGATACT
64 CATTTGTGCGAGATACT
* * * *
49302045 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAA-ATTCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGATCCGAAGG
49302106 TACGTGATTC
Statistics
Matches: 120, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
78 7 0.06
79 69 0.57
80 44 0.37
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCA
TTTGTGCGAGATACT
Found at i:49310084 original size:79 final size:81
Alignment explanation
Indices: 49309947--49310100 Score: 188
Period size: 79 Copynumber: 1.9 Consensus size: 81
49309937 ATGATATCCA
* * *
49309947 GGCTAAGTCCCAAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCAAAGGCATTTGTG
1 GGCTAAGTCCCAAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCATTTGTG
*
49310012 CGAGTTACTAATTTCG
66 CGAGATACTAATTTCG
* * ** *
49310028 GGCTAAG-CCCAAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGT
1 GGCTAAGTCCCAAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCAAAGGCATTTGT
*
49310090 GGGAGATACTA
65 GCGAGATACTA
49310101 TAACCGGGCT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.02
79 39 0.63
80 15 0.24
81 7 0.11
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (81 bp):
GGCTAAGTCCCAAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCATTTGTG
CGAGATACTAATTTCG
Found at i:49310100 original size:40 final size:40
Alignment explanation
Indices: 49309942--49310135 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
49309932 TTCGAATGAT
* * * * * *
49309942 ATCCAGGCTAAGTCCCAAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
49309983 ATCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * * *
49310023 TTTCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
49310062 ATCCGGGTTAAGTCCCGAAGGCATTTGTGGGAGATACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
49310103 A-CCGGGCTATGTCCCGAAGGTATTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
49310136 AGCTATATCC
Statistics
Matches: 126, Mismatches: 23, Indels: 9
0.80 0.15 0.06
Matches are distributed among these distances:
39 34 0.27
40 64 0.51
41 27 0.21
42 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:49310109 original size:79 final size:81
Alignment explanation
Indices: 49309947--49310122 Score: 180
Period size: 79 Copynumber: 2.2 Consensus size: 81
49309937 ATGATATCCA
* * *
49309947 GGCTAAGTCCCAAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCAAAGGCATTTGTG
1 GGCTAAGTCCCAAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCATTTGTG
* **
49310012 CGAGTTACTAATTTCG
66 CGAGATACTAATACCG
* * ** *
49310028 GGCTAAG-CCCAAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGT
1 GGCTAAGTCCCAAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCAAAGGCATTTGT
*
49310090 GGGAGATACT-ATAACCG
65 GCGAGATACTAAT-ACCG
* *
49310107 GGCTATGTCCCGAAGG
1 GGCTAAGTCCCAAAGG
49310123 TATTTGAGCG
Statistics
Matches: 78, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
78 3 0.04
79 46 0.59
80 22 0.28
81 7 0.09
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (81 bp):
GGCTAAGTCCCAAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCATTTGTG
CGAGATACTAATACCG
Found at i:49316452 original size:775 final size:774
Alignment explanation
Indices: 49314793--49322122 Score: 9712
Period size: 775 Copynumber: 9.5 Consensus size: 774
49314783 GGGCTGTCAC
* *
49314793 ATGA-TTTATTTTTCCCTAAATATAATTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* * *
49314857 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTTTATGGCTGAAACAGTGGCCACAACTTATGGCTC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
*
49314922 TATTTCATTGCTTTACTTGTCTA-TTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTCT
131 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTAT
* * * *
49314986 TTGTTTTGGAGACATTTGGATGAATTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGAA
196 TTGTTTTGGAGATATTTAGACGAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGAA
* *
49315051 GACTTGAAGATCGATTACTCGTGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATTA
261 GACTTGAAGATCGGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATTA
* * *
49315116 CACCGAGACTC-T-T---ATTAAG-CAACGATTATTCTATACTAATTTTTAGCTTTACTTTATAG
326 CACCGAGACTCTTATGGAATTATGTCAA-GATTATCCTATGCTAATTTTTAGCTTTACTTTATAG
* * * *
49315175 AAAAATGATTAGGTTAAGGACCTCAAAGCAAGCAACAATAAGCTATTTGACATGAAGTTGGATAT
390 AAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATAT
* * *
49315240 CAAGGTCAAATACCTTCAGTGATCCCTTTGCAATCATTGAAAAAAA-AAGGAGTAGTGAAGTGAA
455 CATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAGTGAAGTGAA
* * * *
49315304 CTATGATGTTTTTTGGTATAATAATAAACACAAACTTTGGGTTTCAATTCTCATTAATTTAGTAT
520 CTATGATGTTTTTTGG-ACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGTAT
* *
49315369 GGTGTTTCTTTTGCTTTCTGCACAAATACTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGT
584 GGTGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGT
* * *
49315434 TTTGAATCATATGTTATTGTCTTTTTTGTGTTAATACATTAATTAATGGTTAAATTATTTTGAGA
649 TTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTTTGAGA
* * *
49315499 TGAGTTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAAGGGAGAATTTGTGACTGTG
714 TGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTG
* *
49315560 ATGA-TATATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAAGGGGAGATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* * *
49315624 CTGAAGGCAAGGAAAAATTCTATGGTTGTTTTTATGGCTAAAATAGTGGCCACAACTTGTGGCTC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
* * * * *
49315689 TATTTCATTACTTTACTTGTCTATTTTTAGAGTTTGAAACTTGTAGAAAAAAAGCATTGGACTCT
131 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTAT
* * * * * *
49315754 TTGTTTTGGAGACATTTAGACGAATTAAAGCTCAAAACAAGAATACCAATTGAGTTAAACTTGAA
196 TTGTTTTGGAGATATTTAGACGAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGAA
* * *
49315819 GACTTGAAGATCGGTTACTCGCAGATCAAATAAAGTCATTTTCCATATTTGAAAGCATTGGATTA
261 GACTTGAAGATCGGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATTA
* * *
49315884 CACCGAGACTCTTATGGAATTATGCCTAGATTATTCTATGCTAATTTTTAGCTTTACTTTATAGA
326 CACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTATAGA
* * *
49315949 AAAATGATTAGATTAAGGACCTCAAAGCATGCAACAATAAACTATTTGCCATGAACTTGGATATC
391 AAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATATC
* * * *
49316014 AAGGTCAAATAGCTTTAGTGATCCCATTGCTATCATTGAAAAAAAGAGGGAGTAGTGAAGTGAAC
456 ATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAGTGAAGTGAAC
49316079 TATGATGTGTTTTTGGTACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGTAT
521 TATGATGT-TTTTTGG-ACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGTAT
* *
49316144 GGTGTTTCTTTTGCTTTCTGCACAAAT-CTCACTCAATCTAGTAATTTTGTACTCCTTTTCTTGT
584 GGTGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGT
* * *
49316208 TTTGAATCATATGTTATTGTCTTTTTTGTGTTAATACATTCATTAACGGTTAAACTACTTTGAGA
649 TTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTTTGAGA
* * * * * * *
49316273 TGAGGTACTTGAGATTCATTGAATAATGAGGAGAT-CTTAAAGGGGAGAATTTGTGACAGTG
714 TGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTT-AAGGGGAGAATTTGTAACTGTG
* *
49316334 ATGATTTTATTTTTCCTTATATATATTTATTCAAATAA-TGCTAAAGGGGGAGATTGTTAACGTA
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAA-AATTGCTAAAGGGGGAGATTGTTAACATA
* * *
49316398 TTTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGTTGGAACAGTGGCCACAACTTGTGGCT
65 TTTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCT
* * *
49316463 CTATTTCATCGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTAGACAA
130 CTATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTA
* ** *
49316528 TTTGTTTTGGATATATTTAGAAAAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTAA
195 TTTGTTTTGGAGATATTTAGACGAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGA
* * *
49316593 AGACTTGAAGATCGATTACTCGCAGATCAAATAAAGTCACTTTCCATATTTGTAGGCATTGGATT
260 AGACTTGAAGATCGGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATT
* * * * * *
49316658 ACACCGAGACTCTTATAGAATTAAGCCACGATTATTCTATGCTAATTTTTTGCTTTACTTTATAG
325 ACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTATAG
* * ** * *
49316723 AAAAATAATTAGGTTGAGGACCTCAAAGCAAGCAACAATAAGCTATTTGACATGAAGTTGGATAT
390 AAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATAT
* * *
49316788 CAAGGTCAAATAGCTTCAGTGATCCCTTTGTAATTATTGAAAAAAAGAGGGAGTAGTGAAGTGAA
455 CATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAGTGAAGTGAA
* *
49316853 CTAGGATGTTTTATTGGTACAATAATAAACACAAACTTAGGGTTTCAATTCTCATTAATCTAGTA
520 CTATGATGTTTT-TTGG-ACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGTA
* * *
49316918 TGGTGTTTCTTTTGCTTTCTGTACAAATGCTCACTCAATCTAGTAATTTTGTACACCTTTCCTTG
583 TGGTGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTG
* * * * *
49316983 TTTTGAATTATATGTTATTGTTTTTTTTGTGTTAATACATTAATTAATGGTTAAATTATTTTGAG
648 TTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTTTGAG
* * ** *
49317048 ATGAGTTAGTTGAGATTCTTTGATTAAAGGGGAGATCCTTAAAAGGAGAATTTTTAACTGTG
713 ATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTG
* * *
49317110 ATGA-TTTATTTTTGCCTATATATATTTATTCAAAAATTGCTAAAGGGGGTGATAGTTAACATA-
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
** * * * * *
49317173 -T---GG--TTG----TTTTTATGGTTGTTTTTATGGTTGAAACAGTGGCCACAACTTGTGGCTC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
* * * * *
49317228 TATTTCATTGCTTTACTTGTTTATTTTTAGAGACT-GAAAATTGTAGAACAAAAGCACTAGACTC
131 TATTTCATTGCTTTACTTGTCTATTTTTAGAG-TTGGAAAATTGTAGAACAAAAGCATTGGACTA
* * * * *
49317292 TTTGTTTTGGAGACATTTAGACGAATTAAAGCTCAAAACAAGAATACCAATTGAGTTAAAGTTGA
195 TTTGTTTTGGAGATATTTAGACGAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGA
* * ** *
49317357 ATACTTGAAGATCGATTACTTACAGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATT
260 AGACTTGAAGATCGGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATT
* * * *
49317422 ACACCGAGAATCTTATGAAATTATGCCAAGATTATTCTATGCTAATTTTTAGCTTTACTTTATAG
325 ACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTATAG
* * *
49317487 AAAAATGATTAGATTAAGGACCTTAAAGCATGCAATAATAAGCTATTTGCCATGAAGTTGGATAT
390 AAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATAT
* *
49317552 CAAGGTCAAATAGCTTCACTGATCCCTTTGCAATCATTG-AAAAAA-AGGGAGTAGTGAAGTGAA
455 CATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAGTGAAGTGAA
*
49317615 CTAGGATGTTTCTTTGGTACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGTA
520 CTATGATGTTT-TTTGG-ACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGTA
* * * * *
49317680 AGAT-ATTTCTTTTGCTTTCTGTACAAATGCTCACTCAATCTCGTAATTTTGTACTCCTTTTCTT
583 TGGTGA-TTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTT
* *
49317744 GTTTTGAATCATATGTTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTAATTTGA
647 GTTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTTTGA
* * * * *
49317809 GATGAGGTAGTTGAGATTCATTGATTGAGGGGGAGATCTTTAAGGGAAGAATTTGTGACTGTG
712 GATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTG
** *
49317872 ATGATTTTATTTTTTCATATATATATATTTATTCAAATATTGCTAAAGGGGGAGATTGTTAACAT
1 ATGATTTTA-TTTTTC-CCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACAT
* * * *
49317937 ATTTGAAGGCCAGAAAAAATTCTATGGTTGTTTCTATGGTTGAAATAGTGGCCACAACTCGTGGC
64 ATTTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGC
* * * *
49318002 TCTATTTCATTTCTTTACTTGTGTATTTTTAGAGTTGGAAAATTGTAGAATAAAATCATTGGACT
129 TCTATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACT
* * * *
49318067 ATTT-TTTCGGAGATATTTACACGATTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAA-TCT
194 ATTTGTTTTGGAGATATTTAGACGAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGT-T
* * ** * *
49318130 AAAGACTTGAAGATCGGTTACTCGCTGATCAAATAAAGTCACTTTCTTTTTTTGTAA-GTATTGG
258 GAAGACTTGAAGATCGGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTG-AAGGCATTGG
* * * *
49318194 CTTTCACCGAGATTCTTATGGAATTATGTCAAGATTATCCTATGCTGATTTTTAGCTTTACTTTA
322 ATTACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTA
* * * * * *
49318259 TA-AAAAATAATTAGATCAAGGTCTTCAAAGCATGGAACAATAAGCTGTTGGCCATGAAGTTGGA
387 TAGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGA
* * * *
49318323 TATCATGGTCAAATAGCCTCAGTAATCCCTTTCCAATCATTGAAAGAAAAGAGGGAGTATTGAAG
452 TATCATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAA-AAAAGAGGGAGTAGTGAAG
* * * *
49318388 TGAACTATGA-------T-G-C--------ACA-GAA-TTAGGGTTTAAATTCTCATCAGTCTTG
516 TGAACTATGATGTTTTTTGGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAG
* * * *
49318434 TATGGTGATTCTTCTGCTCTT-TGCACGAATGCTCACTCAATCTAGTAATTTTGTACACTTTTCC
581 TATGGTGATTCTTTTGCT-TTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCC
** * * *
49318498 TTGTTTTGAATCATATATCGTTGTCTTTTTTGTGTTCATACACTCAATAATGGTTAAATTACTTT
645 TTGTTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTTT
* * * *
49318563 GAGATGAGGTAGTTGAGATTCATTGATTAAGGGGGAAATCCTTAAGGGGAGAATTTTTAATTGTG
710 GAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTG
* * * * ** * *
49318628 ATGATTTTATTTTTACCTATATATATTAATTCAAATATTTCTAAATAGAGAGATTGTTAACGTAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* * * * *
49318693 TTGAAGGGAAGGAAAAATTCTATGGTTGTTTCTATAGCTAAAAAAGTGGCCACAACTTGTGGCAC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
* *
49318758 TATTTCATTGCTTTACTTGTCTA-TTTTAGAGTTGGAAAATTTTAGAACGAAAGCAATTGG-CTA
131 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGC-ATTGGACTA
* * *
49318821 TTTGTTTTGGAGATATTTAGACTAGTTAGAGCCCAAAACAAGAAGATCGATTGAGTTAAAGTTGA
195 TTTGTTTTGGAGATATTTAGACGAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGA
* * * * * *
49318886 TGATTTTAAGATCAGTTACTCGC-GAGTCAAATAAAGTCACTTTCCATATTTGAAGGTAGTGGAT
260 AGACTTGAAGATCGGTTACTCGCGGA-TCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGAT
* * * * *
49318950 TACACCGAGACTTTTATGGATTTATTTGAAGATTATCCTATGCTGATTTTTAGCTTTACTTTATA
324 TACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTATA
*
49319015 GAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAAGTTGGATA
389 GAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATA
* * * * * ** * *
49319080 TCATGGTCAAATAGCTTTAGTGATCCCTTTCCGATCATTAAAAAGAAAAAATGAGTAGAGGAGTG
454 TCATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAA-AAAGAGGGAGTAGTGAAGTG
* * * * *
49319145 AAGTATGACGTTTTTTTTTTGGACAATAATAAACATAAACTTAGGGTTTGAATTCTCATCAGTCT
518 AACTATGA----TGTTTTTTGGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCT
* *
49319210 AGTATGGTGATTCTTCTT-CTCTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTATTCCTTT
579 AGTATGGTGATTCTT-TTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTT
* * *
49319274 CCTTGTTTTGAATCATATATGT-TTGTCTTTTTTGTTTTAATACATTCAATAATGGTTATATTAC
643 CCTTGTTTTGAATCATATAT-TATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTAC
* * * *
49319338 TTTGAGATGAGGTAGTTGAGATTCTTTGATTAAGTGGGAGATCTTTAAGGGAAGAATTTGTAATT
707 TTTGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACT
*
49319403 TTG
772 GTG
* * * *
49319406 ATGATTTTATTTTTACCTATATATATTTATTCAAATATTGCTAAAAGGGGAGATTATTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
** *
49319471 TTGAAGTTAAGGAAAAATTCTATGGTTGTTT-TGATGGCTGAAAAAGTGGCCACAACTTGTGGCT
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCT-ATGGCTGAAATAGTGGCCACAACTTGTGGCT
* * * *
49319535 CTGTTTCATTGCTTTACTTGTCT-CTTTTAGAGTTGGAAAATTTTATAACAAAAGCATTGGACTA
130 CTATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTA
* * *
49319599 TTTGTTTTGGAG--ATTTAGATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTGAAGTTGA
195 TTTGTTTTGGAGATATTTAGACGAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGA
* * * *
49319662 AGACTTGAAGATCGGTTACTCGTGGATCAAATAAAGTCACTTTCTATTTTTGTAA-GCATTGGGT
260 AGACTTGAAGATCGGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTG-AAGGCATTGGAT
* * *
49319726 TACACCGAGACTCATATGG-ATATATGTGAAGATTATCCTATGCTGATTTTTAGCTTTACTTTAT
324 TACACCGAGACTCTTATGGAAT-TATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTAT
* * * *
49319790 AGAAAAATGATTAGATCAAGGACCTTAAAGCATGTATCAATATGCTATTAT-CCATGAAGTTGGA
388 AGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATT-TGCCATGAAGTTGGA
*
49319854 TATCATGGTCAAATAGCTTCAGTGATCCCTTTCCAATCATTGAAAAAAGAGAGGGAGTAGTGAAG
452 TATCATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAAAA-AGAGGGAGTAGTGAAG
* * * *
49319919 TGAAGTATGATGTTTTTTTTCGGACAATAATAAACACAAACTTAGGGTTTGAATTATCATCAGTC
516 TGAACTATGATG--TTTTTT-GGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATC
* * * *
49319984 TAGTATGGTGATTCTTCTGCTCTT-TACACAATTGCTCACTTAATCTAGTAATTTTGTACTCCTT
578 TAGTATGGTGATTCTTTTGCT-TTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTT
* * * * *
49320048 TCCTTGTTTTGATTGATATACTATTGTCTTTTTTGTGTTAATACATTCAATAATTGTTAAATTAC
642 TCCTTGTTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTAC
* * * * * *
49320113 TTTGAGATAAGTTATTTCAGATTCTTTGATTAAGGGGGAGATCCTTAAGAGGAGAATTTGTAATT
707 TTTGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACT
*
49320178 TTG
772 GTG
* * *
49320181 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTTCTAAA-GGGGAAATTGTTAGCATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
*
49320245 TTGAAGGCAA-GAAGAAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGCT
66 TTGAAGGCAAGGAA-AAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCT
* * * **
49320309 CTGTTTCATTGCTTTACTTGTCTATTTTTAGAGCTGGAAAATTGTAGAAAAAAAGTGTTGGACTA
130 CTATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTA
* * * *
49320374 TTTGTTTTGGAGATATTTAAATGAGTTAGAGCCCAAAACATGAAGACCAATTAAGTTAAAGTTGA
195 TTTGTTTTGGAGATATTTAGACGAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGA
** * *
49320439 AGACTTGACTATCGGTTACTCACGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTAGATT
260 AGACTTGAAGATCGGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATT
* * * * *
49320504 ACACTGGGAATCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTGCTTTATTG
325 ACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTATAG
*
49320569 AAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATTAAGTTGGATAT
390 AAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATAT
* * * * *
49320634 CATGGTCAACTAGCTTCAATGATCCCTTTGCAATCATTGAGAAAAAAGAGGAAGTAATGAATTGA
455 CATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGA-AAAAAAGAGGGAGTAGTGAAGTGA
*
49320699 AGTATGATGTTTTTTTTTGGGACAATAATAAACACAAACTTAGGGTTTCAATTCTCAT-AAGTCT
519 ACTATGATG---TTTTTT-GGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAA-TCT
* * * * * *
49320763 ATTATGGTGATTCTTTTTCTTTTTGTACAAATACTCACTCAATTTAGTAATTTTGTACTCCTTTC
579 AGTATGGTGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTC
* *
49320828 CTTGTTTTGAATCATATATTATTGTCTTTATTGTGTTAATACATTCATTAATGGTTAAATTAGTT
644 CTTGTTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTT
* *
49320893 TGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGATATCCTTAAGGGGAGAATTTGCAACTGT
709 TGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGT
49320958 G
774 G
* * * *
49320959 ATTATTTTGTTTTTCCCTCTATATATTTATTCAAAAATTACTAAAGGGGGAGATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* ** *
49321024 TTGGAGGCAAGGAAAAATTCTAT-G--G------T---TGAAATAGTGGCCACAACTTAAGGCTT
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
* * * *
49321077 TGTTTCATTGCTTTACTAGTCTATTTTTAGAGTTGGAAAATTTTAGAACGAAAGCAATTGG-CTA
131 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGC-ATTGGACTA
* * *
49321141 TTTGTTTTGGAGATATTTAGACTAGTTAGAGCCCAAAACAAGAAGATCGATTGAGTTAAAGTTGA
195 TTTGTTTTGGAGATATTTAGACGAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGA
* * * * * *
49321206 TGATTTTAAGATCAGTTACTCGC-GAGTCAAATAAAGTCACTTTCCATATTTGAAGGTAGTGGAT
260 AGACTTGAAGATCGGTTACTCGCGGA-TCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGAT
* *
49321270 TACACCGAGACTCTTATGGAATTATGTAAAGATTATCCTATGCTGATTTTTAGCTTTACTTTATA
324 TACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTATA
* ** * *
49321335 GAAAAGTGATTAGATCAAGGATATCAAAGCATGCAACAATAAGTTATTGGCCATGAAGTTGGATA
389 GAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATA
* * *
49321400 TCATGGTCAAATAGCTTCAATGATCCCTTTGCAATCATTGAACAAAAAAGAAGGAGTAGTGCAGT
454 TCATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTG-A-AAAAAAGAGGGAGTAGTGAAGT
* * * *
49321465 GAAGTATGATGTTCTTTTTTGGACAATAATAAACACAAACTTAGTGTTTAAATTCTCATCAGTCT
517 GAACTATGATG---TTTTTTGGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCT
* * * * *
49321530 AGTGTGGCGATTCTTCTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTTTACTCATTTC
579 AGTATGGTGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTC
* * * *
49321595 CTTATTTTGAATAATATATTGTTGTCTTTTTTGTGTTAATACATTTATTAATGGTTAAATTACTT
644 CTTGTTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTT
* *
49321660 TGAGATGAGGTAGTTGAAATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAGCTGT
709 TGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGT
49321725 G
774 G
* * * *
49321726 ATGATTTTATAGTTTCTCTATAGATATTTTTTCAAAAATTGCTAAAGGGGGAGATTGTTAACATA
1 ATGATTTTAT-TTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATA
*
49321791 TTTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGAGGCT
65 TTTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCT
* * * *
49321856 C-AGTTTCA-----TTACTAGTCTATTTTTAGAGTTGAAAAATTTTAGAACAAAAGCATTGAACT
130 CTA-TTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACT
* * * *
49321915 ATTTGTTTTAGATATATTTAGACGAGTTAGAGCCCAAAACATGAAGACCAATTGAGCTAAAGTTG
194 ATTTGTTTTGGAGATATTTAGACGAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTG
* * * *
49321980 AAGACTTGAAGATCGGTTATTCGTGGATGAAATAAAGTCCCTTTCCATATTTGAAGGCATTGGAT
259 AAGACTTGAAGATCGGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGAT
* * * *
49322045 TACACC-AGGACTCTTATGGAATTATGTCAATATTATGCTATACTGATTTTTAGCTTTACTTTAT
324 TACACCGA-GACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTAT
*
49322109 AG-AAAATTATTAGA
388 AGAAAAATGATTAGA
49322123 CTATGACTCT
Statistics
Matches: 5811, Mismatches: 629, Indels: 239
0.87 0.09 0.04
Matches are distributed among these distances:
753 37 0.01
754 284 0.05
755 124 0.02
756 199 0.03
757 5 0.00
758 3 0.00
762 255 0.04
763 11 0.00
764 376 0.06
765 45 0.01
766 4 0.00
767 708 0.12
768 284 0.05
769 3 0.00
770 6 0.00
771 1 0.00
772 1 0.00
773 149 0.03
774 392 0.07
775 1359 0.23
776 536 0.09
777 318 0.05
778 642 0.11
779 36 0.01
780 33 0.01
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (774 bp):
ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTAT
TTGTTTTGGAGATATTTAGACGAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGAA
GACTTGAAGATCGGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATTA
CACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTATAGA
AAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATATC
ATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAGTGAAGTGAAC
TATGATGTTTTTTGGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGTATGG
TGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGTTT
TGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTTTGAGATG
AGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTG
Found at i:49317188 original size:12 final size:12
Alignment explanation
Indices: 49317171--49317202 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
49317161 ATAGTTAACA
49317171 TATGGTTGTTTT
1 TATGGTTGTTTT
49317183 TATGGTTGTTTT
1 TATGGTTGTTTT
49317195 TATGGTTG
1 TATGGTTG
49317203 AAACAGTGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.00, G:0.28, T:0.62
Consensus pattern (12 bp):
TATGGTTGTTTT
Found at i:49323869 original size:16 final size:16
Alignment explanation
Indices: 49323845--49323877 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
49323835 TAATGAGTAC
49323845 AATAATATATAAAAAT
1 AATAATATATAAAAAT
*
49323861 AATACTATATAAAAAT
1 AATAATATATAAAAAT
49323877 A
1 A
49323878 CATATGCACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
AATAATATATAAAAAT
Found at i:49324000 original size:23 final size:22
Alignment explanation
Indices: 49323960--49324015 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
49323950 CCAATTTTAC
49323960 ATAAAGATATACCTA-TATATATA
1 ATAAAGATATA--TACTATATATA
* *
49323983 TTAAAGATATATAC-ATATGTA
1 ATAAAGATATATACTATATATA
49324004 ATAAA-ATATATA
1 ATAAAGATATATA
49324016 AATGACATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 7 0.24
21 12 0.41
23 10 0.34
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (22 bp):
ATAAAGATATATACTATATATA
Found at i:49324086 original size:18 final size:19
Alignment explanation
Indices: 49324060--49324099 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
49324050 TATGATAAAA
*
49324060 ATAATAATATACATAATAT
1 ATAATAATACACATAATAT
*
49324079 ATAA-AATACATATAATAT
1 ATAATAATACACATAATAT
49324097 ATA
1 ATA
49324100 CATATACTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (19 bp):
ATAATAATACACATAATAT
Found at i:49324087 original size:16 final size:15
Alignment explanation
Indices: 49324059--49324129 Score: 51
Period size: 16 Copynumber: 4.7 Consensus size: 15
49324049 GTATGATAAA
*
49324059 AATAATAATATACAT
1 AATAATAAAATACAT
49324074 AATATATAAAATACAT
1 AATA-ATAAAATACAT
*
49324090 -ATAAT-ATATACAT
1 AATAATAAAATACAT
*
49324103 -ATACTAGAAATGACAAT
1 AATAATA-AAAT-AC-AT
49324120 AAT-ATAAAAT
1 AATAATAAAAT
49324130 GAACTTGCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
13 11 0.24
14 2 0.04
15 10 0.22
16 16 0.36
17 4 0.09
18 2 0.04
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATAAAATACAT
Found at i:49324100 original size:13 final size:14
Alignment explanation
Indices: 49324060--49324105 Score: 58
Period size: 13 Copynumber: 3.2 Consensus size: 14
49324050 TATGATAAAA
49324060 ATAATAATATACAT
1 ATAATAATATACAT
*
49324074 AATATATAAAATACAT
1 -ATA-ATAATATACAT
49324090 ATAAT-ATATACAT
1 ATAATAATATACAT
49324103 ATA
1 ATA
49324106 CTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 10 0.36
14 2 0.07
15 6 0.21
16 10 0.36
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATAATATACAT
Found at i:49324122 original size:28 final size:28
Alignment explanation
Indices: 49324059--49324125 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 28
49324049 GTATGATAAA
49324059 AATAATAATATACATAATATATAAAATAC
1 AATAAT-ATATACATAATATATAAAATAC
*
49324088 ATATAATATATACAT-ATACTA-GAAATGAC
1 A-ATAATATATACATAATA-TATAAAAT-AC
49324117 AATAATATA
1 AATAATATA
49324126 AAATGAACTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
28 15 0.44
29 14 0.41
30 5 0.15
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.31
Consensus pattern (28 bp):
AATAATATATACATAATATATAAAATAC
Found at i:49324221 original size:17 final size:19
Alignment explanation
Indices: 49324199--49324242 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
49324189 GGAAATACTT
*
49324199 AATATATA-ATAAT-TTAA
1 AATATATACATAATATAAA
*
49324216 AATATATACATGATATAAA
1 AATATATACATAATATAAA
49324235 AATATATA
1 AATATATA
49324243 TAGAACGTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 4 0.17
19 11 0.48
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
AATATATACATAATATAAA
Found at i:49324426 original size:59 final size:57
Alignment explanation
Indices: 49324334--49324462 Score: 126
Period size: 59 Copynumber: 2.2 Consensus size: 57
49324324 ACATACAATG
*
49324334 TATATAAAAATATATAATATATATACAATATATACATATCTAATATAATAATAAAT-AT-A
1 TATATAAAAATATATAATATATACACAATATATACATA-CTAA-A-AAT-ATAAATAATAA
* *
49324393 TATATAAAAATATTGATAATACT-T-CACAA-ATATATATACTAAAAATATACATAATAA
1 TATATAAAAATA-T-ATAATA-TATACACAATATATACATACTAAAAATATAAATAATAA
49324450 TATAT-AAAATATA
1 TATATAAAAATATA
49324463 GTATTAAAAG
Statistics
Matches: 62, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
54 1 0.02
55 6 0.10
56 11 0.18
57 7 0.11
58 4 0.06
59 20 0.32
60 5 0.08
61 7 0.11
62 1 0.02
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.36
Consensus pattern (57 bp):
TATATAAAAATATATAATATATACACAATATATACATACTAAAAATATAAATAATAA
Found at i:49324614 original size:3 final size:3
Alignment explanation
Indices: 49324606--49324672 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
49324596 ATGACAACAC
49324606 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
49324654 ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA A
49324673 ATTAAAGTAG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:49325321 original size:14 final size:13
Alignment explanation
Indices: 49325302--49325334 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
49325292 AAAAGGAAAG
49325302 AAAAAAAAAAGAA
1 AAAAAAAAAAGAA
49325315 AAGAAAAAAAAGAA
1 AA-AAAAAAAAGAA
49325329 AAAAAA
1 AAAAAA
49325335 TCGATTCGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:49325325 original size:9 final size:9
Alignment explanation
Indices: 49325298--49325334 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
49325288 TAGGAAAAGG
49325298 AAAG-AAAA
1 AAAGAAAAA
*
49325306 AAA-AAAGA
1 AAAGAAAAA
49325314 AAAGAAAAA
1 AAAGAAAAA
49325323 AAAGAAAAA
1 AAAGAAAAA
49325332 AAA
1 AAA
49325335 TCGATTCGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
8 9 0.36
9 16 0.64
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (9 bp):
AAAGAAAAA
Found at i:49325332 original size:16 final size:16
Alignment explanation
Indices: 49325292--49325325 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
49325282 TTCGAGTAGG
*
49325292 AAAAGGAAAGAAAAAA
1 AAAAGAAAAGAAAAAA
49325308 AAAAGAAAAGAAAAAA
1 AAAAGAAAAGAAAAAA
49325324 AA
1 AA
49325326 GAAAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAGAAAAAA
Found at i:49326224 original size:44 final size:44
Alignment explanation
Indices: 49326176--49326262 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
49326166 CTTCGATCTG
* *
49326176 CTTCACTATAACTTCAGAAAGACAAGACTTGCAACTTTGACCTA
1 CTTCACTACAACTTCAGAAAGACAAAACTTGCAACTTTGACCTA
* **
49326220 CTTCACTGCAACTTCAGGGAGACAAAACTTGCAACTTTGACCT
1 CTTCACTACAACTTCAGAAAGACAAAACTTGCAACTTTGACCT
49326263 GCTCCGCTGC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (44 bp):
CTTCACTACAACTTCAGAAAGACAAAACTTGCAACTTTGACCTA
Found at i:49326273 original size:44 final size:44
Alignment explanation
Indices: 49326185--49326277 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
49326175 GCTTCACTAT
* *
49326185 AACTTCAGAAAGACAAGACTTGCAACTTTGACCTACTTCACTGC
1 AACTTCAGAAAGACAAAACTTGCAACTTTGACCTACTCCACTGC
** * *
49326229 AACTTCAGGGAGACAAAACTTGCAACTTTGACCTGCTCCGCTGC
1 AACTTCAGAAAGACAAAACTTGCAACTTTGACCTACTCCACTGC
49326273 AACTT
1 AACTT
49326278 TAGAGAGGCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (44 bp):
AACTTCAGAAAGACAAAACTTGCAACTTTGACCTACTCCACTGC
Found at i:49326530 original size:80 final size:75
Alignment explanation
Indices: 49326438--49326716 Score: 232
Period size: 73 Copynumber: 3.7 Consensus size: 75
49326428 GCCAAAACTT
* **
49326438 AACTCACCTCTCGCAATATAAGTT-AGTTTTGAAACTTAAAAATAGATTTTGAAAATACCTCGAC
1 AACTCACCTCTCGCAATATAAGTTGACTTTT-----TTAAAAATAGAAATTGAAAATACCTCGAC
*
49326502 ATGTGACCTGCGGCTC
61 ATGTGACCCG-GGCTC
* * * *
49326518 AACTCACTTCTCGCAATATGAGTTGACTTTTTTGAAAATATAAATTGAAAATACCTCGACATGTG
1 AACTCACCTCTCGCAATATAAGTTGACTTTTTTAAAAATAGAAATTGAAAATACCTCGACATGTG
49326583 ACCCGGGCTC
66 ACCCGGGCTC
* * * * * *
49326593 AAATCACCTCTAGCAATATGCA-TTGA-TTTTTGAAAAACATAAATTGAAAATACCTC-AGC--G
1 AACTCACCTCTCGCAATAT-AAGTTGACTTTTTTAAAAATAGAAATTGAAAATACCTCGA-CATG
49326653 TG-CCCTGAGGCTC
64 TGACCC-G-GGCTC
* * * * *
49326666 AACTCACCTCTCGCAATATGAGTTCA-TTTTTGACAAACAGAAATTTGAAAA
1 AACTCACCTCTCGCAATATAAGTTGACTTTTTTAAAAATAGAAA-TTGAAAA
49326717 ATAGAAACTG
Statistics
Matches: 171, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
71 3 0.02
72 5 0.03
73 41 0.24
74 35 0.20
75 25 0.15
76 35 0.20
80 22 0.13
81 5 0.03
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (75 bp):
AACTCACCTCTCGCAATATAAGTTGACTTTTTTAAAAATAGAAATTGAAAATACCTCGACATGTG
ACCCGGGCTC
Found at i:49326674 original size:73 final size:73
Alignment explanation
Indices: 49326486--49326880 Score: 277
Period size: 73 Copynumber: 5.1 Consensus size: 73
49326476 AAAATAGATT
* *
49326486 TTGAAAATACCTCGACATGTGACCTGCGGCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTT
1 TTGAAAATACCTCGACA-GTGCCCTG-GGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
*
49326551 G-AAAATATAAA
62 GAAAAACATAAA
* *
49326562 TTGAAAATACCTCGACATGTGACCC-GGGCTCAAATCACCTCTAGCAATATGCA-TTGATTTTTG
1 TTGAAAATACCTCGACA-GTG-CCCTGGGCTCAACTCACCTCTCGCAATATG-AGTTGATTTTTG
49326625 AAAAACATAAA
63 AAAAACATAAA
*
49326636 TTGAAAATACCTC-AGC-GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTCATTTTTGA
1 TTGAAAATACCTCGA-CAGTGCCCTG-GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
* *
49326699 CAAACAGAAA
64 AAAACATAAA
* * * * *
49326709 TTTGAAAAATAGAAACT-GAAAATACCTCAGCATGTGAGC-CGAGGCTCAACTCACCTCTCGCAA
1 -TTG-AAAAT---ACCTCGACAGT-GC-C--C-TG-G-GCTC-A-ACTC-----ACCTCTCGCAA
* *
49326772 TATGAGTTGATTTTTTTGAAAAGCAGAAA
47 TATGAGTTGA--TTTTTGAAAAACATAAA
* *
49326801 TTGAAAATTCCTC-AGC-GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
1 TTGAAAATACCTCGA-CAGTGCCCTG-GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
*
49326864 AAAACAGAAA
64 AAAACATAAA
49326874 TTGAAAA
1 TTGAAAA
49326881 AACAGAAATT
Statistics
Matches: 259, Mismatches: 28, Indels: 67
0.73 0.08 0.19
Matches are distributed among these distances:
71 3 0.01
72 5 0.02
73 71 0.27
74 26 0.10
75 52 0.20
76 23 0.09
77 2 0.01
78 5 0.02
79 1 0.00
80 4 0.02
81 3 0.01
82 4 0.02
83 5 0.02
84 3 0.01
85 4 0.02
86 1 0.00
87 4 0.02
90 25 0.10
91 3 0.01
92 15 0.06
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (73 bp):
TTGAAAATACCTCGACAGTGCCCTGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
AACATAAA
Found at i:49326772 original size:90 final size:89
Alignment explanation
Indices: 49326621--49326807 Score: 256
Period size: 90 Copynumber: 2.1 Consensus size: 89
49326611 TGCATTGATT
* *
49326621 TTTGAAAAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAACAGAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
49326686 AGTTCA-TTTTTGACAAA-CAGAAA
66 AGTTCATTTTTTGA-AAAGCAGAAA
* *
49326709 TTTGAAAAATAGAAACTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAACAGAAACTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAAT
*
49326773 ATGAGTTGATTTTTTTGAAAAGCAGAAA
63 ATGAGTTCA-TTTTTTGAAAAGCAGAAA
49326801 -TTGAAAA
1 TTTGAAAA
49326808 TTCCTCAGCG
Statistics
Matches: 88, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
88 28 0.32
90 35 0.40
91 12 0.14
92 13 0.15
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (89 bp):
TTTGAAAAACAGAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTCATTTTTTGAAAAGCAGAAA
Found at i:49326832 original size:165 final size:160
Alignment explanation
Indices: 49326552--49327042 Score: 662
Period size: 165 Copynumber: 3.0 Consensus size: 160
49326542 GACTTTTTTG
* * * *
49326552 AAAATATAAATTGAAAATACCTC-GACATGTGACCCG-GGCTCAAATCACCTCTAGCAATATGCA
1 AAAATAGAAATTGAAAATACCTCAG-CATGTGAACCGAGGCTCAACTCACCTCTCGCAATATG-A
* *
49326615 TTGATTTTTGAAAAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGC
64 TTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGC
*
49326680 AATATGAGTTCATTTTTGACAAACAGAAATTTGA
129 AATATGAGTTGATTTTTGA-AAACAGAAA-TTGA
* *
49326714 AAAATAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAATAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGA-T
* *
49326779 TGATTTTTTTGAAAAGCAGAAATTGAAAATTCCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCG
65 TGA--TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCG
49326844 CAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
128 CAATATGAGTTGATTTTTG-AAAACAGAAATTG-A
* * * * * *
49326879 AAAACAGAAATTGAAAATACCTCAGTACGTGAACCTAGGTTCAACTCACCTCTCGCCATATGAAT
1 AAAATAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATG-AT
* * * * *
49326944 TGATTTTTGAAAAATAGCATTTGAAAATACCTCAGTGTGCCCCGAGGCCCAACTCACCTCTCGCA
65 TGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCA
*
49327009 ATATGAGTTGATTTTTGAAACATAGAAATTGA
130 ATATGAGTTGATTTTTGAAA-ACAGAAATTGA
49327041 AA
1 AA
49327043 TTACCTCAGC
Statistics
Matches: 294, Mismatches: 26, Indels: 18
0.87 0.08 0.05
Matches are distributed among these distances:
162 38 0.13
163 109 0.37
164 3 0.01
165 142 0.48
166 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (160 bp):
AAAATAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGATT
GATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTGAAAACAGAAATTGA
Found at i:49326848 original size:75 final size:74
Alignment explanation
Indices: 49326709--49326880 Score: 256
Period size: 75 Copynumber: 2.3 Consensus size: 74
49326699 CAAACAGAAA
* * *
49326709 TTTGAAAAATAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATA
49326774 TGAGTTGATTTT
65 TGAGTTGA--TT
* * *
49326786 TTTGAAAAGCAGAAATTGAAAATTCCTCAGC-GTGCCCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
49326850 GAGTTGATT
66 GAGTTGATT
49326859 TTTGAAAAACAGAAATTGAAAA
1 TTTGAAAAACAGAAATTGAAAA
49326881 AACAGAAATT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
73 23 0.26
75 38 0.43
77 27 0.31
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (74 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATT
Found at i:49326883 original size:15 final size:15
Alignment explanation
Indices: 49326863--49326895 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
49326853 TTGATTTTTG
49326863 AAAAACAGAAATTGA
1 AAAAACAGAAATTGA
49326878 AAAAACAGAAATTGA
1 AAAAACAGAAATTGA
49326893 AAA
1 AAA
49326896 TACCTCAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.70, C:0.06, G:0.12, T:0.12
Consensus pattern (15 bp):
AAAAACAGAAATTGA
Found at i:49326890 original size:88 final size:89
Alignment explanation
Indices: 49326790--49326957 Score: 248
Period size: 90 Copynumber: 1.9 Consensus size: 89
49326780 GATTTTTTTG
* * ** *
49326790 AAAAGCAGAAATTGAAAATTCCTCAG-CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAGACGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAAT
49326854 TGATTTTTGAAAAACAGAAATTGA
66 TGATTTTTGAAAAACAGAAATTGA
* * *
49326878 AAAAACAGAAATTGAAAATACCTCAGTACGTGAACCTAGGTTCAACTCACCTCTCGCCATATGAA
1 AAAAACAGAAATTGAAAATACCTCAG-ACGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAA
49326943 TTGATTTTTGAAAAA
65 TTGATTTTTGAAAAA
49326958 TAGCATTTGA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
88 24 0.34
90 46 0.66
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (89 bp):
AAAAACAGAAATTGAAAATACCTCAGACGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAAT
TGATTTTTGAAAAACAGAAATTGA
Found at i:49327014 original size:73 final size:73
Alignment explanation
Indices: 49326878--49327116 Score: 298
Period size: 73 Copynumber: 3.2 Consensus size: 73
49326868 CAGAAATTGA
* ** * ** *
49326878 AAAAACAGAAATTGAAAATACCTCAGTACGTGAACCTAGGTTCAACTCACCTCTCGCCATATGAA
1 AAAAATAGAAATTGAAAATACCTCAG--CGTGCCCCGAGGCCCAACTCACCTCTCGCAATATGAA
49326943 TTGATTTTTG
64 TTGATTTTTG
* * * *
49326953 AAAAATAGCATTTGAAAATACCTCAGTGTGCCCCGAGGCCCAACTCACCTCTCGCAATATGAGTT
1 AAAAATAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCCCAACTCACCTCTCGCAATATGAATT
49327018 GATTTTTG
66 GATTTTTG
* * * * * *
49327026 AAACATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCGCCTCTCGCAATATGAATT
1 AAAAATAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCCCAACTCACCTCTCGCAATATGAATT
49327091 GATTTTTG
66 GATTTTTG
*
49327099 AAAAGTAGAAATTGAAAA
1 AAAAATAGAAATTGAAAA
49327117 AAAGAAATTG
Statistics
Matches: 140, Mismatches: 24, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
73 117 0.84
75 23 0.16
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.28
Consensus pattern (73 bp):
AAAAATAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCCCAACTCACCTCTCGCAATATGAATT
GATTTTTG
Found at i:49327097 original size:236 final size:235
Alignment explanation
Indices: 49326709--49327197 Score: 684
Period size: 236 Copynumber: 2.1 Consensus size: 235
49326699 CAAACAGAAA
* *
49326709 TTTGAAAAATAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAATAGAAACTGAAAATACCTCAG-ATGTGACCCGAGGCCCAACTCACCTCTCGCAATA
49326774 TGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATTCCTCAGCGTGCCCCGAGGCTCAACTCACC
65 TGAGTTGA-TTTTTTGAAAAGCAGAAATTGAAAATTCCTCAGCGTGCCCCGAGGCTCAACTCACC
*
49326839 TCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAAACAGAAATTGAAAATACCTCAG
129 TCTCGCAATATGAATTGATTTTTGAAAAACAGAAATTGAAAAAA-AGAAATTGAAAATACCTCAG
* *
49326904 TACGTGAACCT-AGGTTCAACTCACCTCTCGCCATATGAATTGATT
193 --CGTG-ACCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATT
* ** *
49326949 TTTGAAAAATAGCATTTGAAAATACCTCAG-TGTGCCCCGAGGCCCAACTCACCTCTCGCAATAT
1 TTTGAAAAATAGAAACTGAAAATACCTCAGATGTGACCCGAGGCCCAACTCACCTCTCGCAATAT
* * * *
49327013 GAGTTGA-TTTTTGAAACA-TAGAAATTG-AAATTACCTCAGCGTGTCCTGAGGCTCAACTCGCC
66 GAGTTGATTTTTTGAAA-AGCAGAAATTGAAAATT-CCTCAGCGTGCCCCGAGGCTCAACTCACC
** *
49327075 TCTCGCAATATGAATTGATTTTTGAAAAGTAGAAATTGAAAAAAAGAAATTGAAATTACCTCAGC
129 TCTCGCAATATGAATTGATTTTTGAAAAACAGAAATTGAAAAAAAGAAATTGAAAATACCTCAGC
* *
49327140 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
194 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAATTGA--TT
49327184 TTTG-AAAATAGAAA
1 TTTGAAAAATAGAAA
49327198 TAAAAACATC
Statistics
Matches: 224, Mismatches: 20, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
232 3 0.01
233 33 0.15
234 8 0.04
235 30 0.13
236 84 0.38
237 1 0.00
238 38 0.17
240 27 0.12
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (235 bp):
TTTGAAAAATAGAAACTGAAAATACCTCAGATGTGACCCGAGGCCCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTGAAAAGCAGAAATTGAAAATTCCTCAGCGTGCCCCGAGGCTCAACTCACCTC
TCGCAATATGAATTGATTTTTGAAAAACAGAAATTGAAAAAAAGAAATTGAAAATACCTCAGCGT
GACCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATT
Found at i:49327169 original size:87 final size:87
Alignment explanation
Indices: 49327023--49327198 Score: 291
Period size: 87 Copynumber: 2.0 Consensus size: 87
49327013 GAGTTGATTT
* * *
49327023 TTGAAACATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCGCCTCTCGCAATATGA
1 TTGAAAAAAAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
49327088 ATTGA-TTTTTGAAAAGTAGAAA
66 ATTGATTTTTTGAAAA-TAGAAA
49327110 TTGAAAAAAAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAAAAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
49327175 GTTGATTTTTTTGAAAATAGAAA
66 ATTGA-TTTTTTGAAAATAGAAA
49327198 T
1 T
49327199 AAAAACATCA
Statistics
Matches: 83, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
87 66 0.80
88 7 0.08
89 10 0.12
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Consensus pattern (87 bp):
TTGAAAAAAAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
ATTGATTTTTTGAAAATAGAAA
Found at i:49339702 original size:23 final size:22
Alignment explanation
Indices: 49339662--49339717 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
49339652 CCAATTTTAC
49339662 ATAAAGATATACCTA-TATATATA
1 ATAAAGATATA--TACTATATATA
* *
49339685 TTAAAGATATATAC-ATATGTA
1 ATAAAGATATATACTATATATA
49339706 ATAAA-ATATATA
1 ATAAAGATATATA
49339718 AATGACATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 7 0.24
21 12 0.41
23 10 0.34
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (22 bp):
ATAAAGATATATACTATATATA
Found at i:49339788 original size:16 final size:15
Alignment explanation
Indices: 49339760--49339830 Score: 51
Period size: 16 Copynumber: 4.7 Consensus size: 15
49339750 TGTATGATAA
*
49339760 AATAATAATATACAT
1 AATAATAAAATACAT
49339775 AATATATAAAATACAT
1 AATA-ATAAAATACAT
*
49339791 -ATAAT-ATATACAT
1 AATAATAAAATACAT
*
49339804 -ATACTAGAAATGACAAT
1 AATAATA-AAAT-AC-AT
49339821 AAT-ATAAAAT
1 AATAATAAAAT
49339831 GAACTTGCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
13 11 0.24
14 2 0.04
15 10 0.22
16 16 0.36
17 4 0.09
18 2 0.04
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATAAAATACAT
Found at i:49339801 original size:13 final size:14
Alignment explanation
Indices: 49339761--49339806 Score: 58
Period size: 13 Copynumber: 3.2 Consensus size: 14
49339751 GTATGATAAA
49339761 ATAATAATATACAT
1 ATAATAATATACAT
*
49339775 AATATATAAAATACAT
1 -ATA-ATAATATACAT
49339791 ATAAT-ATATACAT
1 ATAATAATATACAT
49339804 ATA
1 ATA
49339807 CTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 10 0.36
14 2 0.07
15 6 0.21
16 10 0.36
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATAATATACAT
Found at i:49339823 original size:28 final size:28
Alignment explanation
Indices: 49339760--49339826 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 28
49339750 TGTATGATAA
49339760 AATAATAATATACATAATATATAAAATAC
1 AATAAT-ATATACATAATATATAAAATAC
*
49339789 ATATAATATATACAT-ATACTA-GAAATGAC
1 A-ATAATATATACATAATA-TATAAAAT-AC
49339818 AATAATATA
1 AATAATATA
49339827 AAATGAACTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
28 15 0.44
29 14 0.41
30 5 0.15
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.31
Consensus pattern (28 bp):
AATAATATATACATAATATATAAAATAC
Found at i:49339922 original size:17 final size:19
Alignment explanation
Indices: 49339900--49339943 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
49339890 AGAAATACTT
*
49339900 AATATATA-ATAAT-TTAA
1 AATATATACATAATATAAA
*
49339917 AATATATACATGATATAAA
1 AATATATACATAATATAAA
49339936 AATATATA
1 AATATATA
49339944 TAGAACGTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 4 0.17
19 11 0.48
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
AATATATACATAATATAAA
Found at i:49340316 original size:3 final size:3
Alignment explanation
Indices: 49340308--49340359 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
49340298 ATGTCAACAC
*
49340308 ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
49340356 ATA A
1 ATA A
49340360 AATTAAAGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:49340838 original size:13 final size:14
Alignment explanation
Indices: 49340803--49340832 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
49340793 TTGAGTTGGG
49340803 AAAGAAAAAAAAAGA
1 AAAG-AAAAAAAAGA
49340818 AAAGAAAAAAAAGA
1 AAAGAAAAAAAAGA
49340832 A
1 A
49340833 GGAAAATCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAAAAGA
Found at i:49341401 original size:16 final size:18
Alignment explanation
Indices: 49341374--49341406 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
49341364 TTATTGTTTG
49341374 GGTTTGTGGG-TTAGTGA
1 GGTTTGTGGGTTTAGTGA
49341391 GGTTT-TGGGTTTAGTG
1 GGTTTGTGGGTTTAGTG
49341407 TAATGTAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.09, C:0.00, G:0.45, T:0.45
Consensus pattern (18 bp):
GGTTTGTGGGTTTAGTGA
Found at i:49342192 original size:22 final size:22
Alignment explanation
Indices: 49342164--49342206 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
49342154 TGTAATTATA
49342164 AATTATAATTTATGATCATAAT
1 AATTATAATTTATGATCATAAT
*
49342186 AATTATAATTTCTGATCATAA
1 AATTATAATTTATGATCATAA
49342207 AATCTACAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (22 bp):
AATTATAATTTATGATCATAAT
Found at i:49350139 original size:16 final size:16
Alignment explanation
Indices: 49350113--49350151 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
49350103 GGCAACCCAA
*
49350113 ATTTT-TTATTTTTTT
1 ATTTTATTATTTATTT
49350128 ATTTTATTATTTATTT
1 ATTTTATTATTTATTT
*
49350144 ATATTATT
1 ATTTTATT
49350152 TACTATTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTTATTATTTATTT
Found at i:49350153 original size:20 final size:20
Alignment explanation
Indices: 49350117--49350160 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
49350107 ACCCAAATTT
* *
49350117 TTTATTTTTTTATTTTATTA
1 TTTATTTTATTATTTTACTA
49350137 TTTATTTATATTA-TTTACTA
1 TTTATTT-TATTATTTTACTA
49350157 TTTA
1 TTTA
49350161 CTATTTACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTATTTTATTATTTTACTA
Found at i:49350158 original size:7 final size:7
Alignment explanation
Indices: 49350148--49350174 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
49350138 TTATTTATAT
49350148 TATTTAC
1 TATTTAC
49350155 TATTTAC
1 TATTTAC
49350162 TATTTAC
1 TATTTAC
49350169 TATTTA
1 TATTTA
49350175 TTTTTCTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.59
Consensus pattern (7 bp):
TATTTAC
Found at i:49355520 original size:15 final size:15
Alignment explanation
Indices: 49355500--49355548 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
49355490 ATCATATCTC
49355500 ATATTTTCCATTTCA
1 ATATTTTCCATTTCA
*
49355515 ATATTTTCTCATCTC-
1 ATATTTTC-CATTTCA
*
49355530 ATCTTTTCCATTTCA
1 ATATTTTCCATTTCA
49355545 ATAT
1 ATAT
49355549 CAATCACATA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 5 0.18
15 18 0.64
16 5 0.18
ACGTcount: A:0.24, C:0.22, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATTTTCCATTTCA
Found at i:49356728 original size:18 final size:18
Alignment explanation
Indices: 49356705--49356741 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
49356695 AAAAATAGAG
*
49356705 AAAAATTAAGGATTCTCT
1 AAAAATGAAGGATTCTCT
*
49356723 AAAAATGAAGGATTTTCT
1 AAAAATGAAGGATTCTCT
49356741 A
1 A
49356742 TCTCCTTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.08, G:0.14, T:0.32
Consensus pattern (18 bp):
AAAAATGAAGGATTCTCT
Found at i:49357422 original size:16 final size:16
Alignment explanation
Indices: 49357407--49357464 Score: 89
Period size: 16 Copynumber: 3.6 Consensus size: 16
49357397 GATTATAACT
*
49357407 CTATTTCATTACAACT
1 CTATTTCATTACAACC
*
49357423 CTATTACATTACAACC
1 CTATTTCATTACAACC
49357439 CTATTTCATTACAACC
1 CTATTTCATTACAACC
*
49357455 CTATTCCATT
1 CTATTTCATT
49357465 CCACTGAACC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (16 bp):
CTATTTCATTACAACC
Found at i:49357443 original size:32 final size:32
Alignment explanation
Indices: 49357398--49357464 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
49357388 TGAATTACTG
* * *
49357398 ATTATAACTCTATTTCATTACAACTCTATTAC
1 ATTACAACCCTATTTCATTACAACCCTATTAC
*
49357430 ATTACAACCCTATTTCATTACAACCCTATTCC
1 ATTACAACCCTATTTCATTACAACCCTATTAC
49357462 ATT
1 ATT
49357465 CCACTGAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.40
Consensus pattern (32 bp):
ATTACAACCCTATTTCATTACAACCCTATTAC
Found at i:49361024 original size:27 final size:27
Alignment explanation
Indices: 49360993--49361087 Score: 93
Period size: 27 Copynumber: 3.5 Consensus size: 27
49360983 TTAGTTTACC
* *
49360993 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
* *
49361020 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TACCCTCGATTTGTA
* * *
49361047 AAATTACCCAAATATCCTTGATTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
* *
49361074 AAATCACTGAAATA
1 AAATTACTCAAATA
49361088 AGATAGAATT
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
26 3 0.05
27 48 0.87
28 4 0.07
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACTCAAATACCCTCGATTTGTA
Found at i:49361132 original size:27 final size:27
Alignment explanation
Indices: 49361092--49361314 Score: 338
Period size: 27 Copynumber: 8.3 Consensus size: 27
49361082 GAAATAAGAT
*
49361092 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
49361119 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
49361146 AGAATTATCGTTTTACCCTCAATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
49361173 AAAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
**
49361200 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
49361227 AGAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
*
49361254 AGAATTACCGTTTTACTCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
49361281 AGAATTACTGTTTTATCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
49361308 AAAATTA
1 AGAATTA
49361315 TTGAAATACC
Statistics
Matches: 176, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 176 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
AGAATTACCGTTTTACCCTCGATTTAC
Found at i:49361198 original size:81 final size:81
Alignment explanation
Indices: 49361094--49361343 Score: 347
Period size: 81 Copynumber: 3.1 Consensus size: 81
49361084 AATAAGATAG
* *
49361094 AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTT
1 AATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGTTT
49361159 TACCCTCAATTTACAA
66 TACCCTCAATTTACAA
* * *
49361175 AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
1 AATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGTTT
* * *
49361240 TACCCTCGATTTATAG
66 TACCCTCAATTTACAA
* * * * ***
49361256 AATTACCGTTTTACTCTCGATTTACAGAATTACTGTTTTATCCTCGATTTACAAAATTATTGAAA
1 AATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGTTT
* *
49361321 TACCCTTAGTTTACAA
66 TACCCTCAATTTACAA
49361337 AATTACC
1 AATTACC
49361344 AAAATACCCT
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 146 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (81 bp):
AATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGTTT
TACCCTCAATTTACAA
Found at i:49361348 original size:27 final size:26
Alignment explanation
Indices: 49361318--49361460 Score: 117
Period size: 27 Copynumber: 5.3 Consensus size: 26
49361308 AAAATTATTG
*
49361318 AAATACCCTTAGTTTACAAAATTACCA
1 AAATACCC-TAGTTTATAAAATTACCA
* * *
49361345 AAATACCCTCGATCAGTAAAATTACCA
1 AAATACCCTAGTTTA-TAAAATTACCA
* * *
49361372 AAATACCCCTGGTTTGTAAAATTACTA
1 AAATA-CCCTAGTTTATAAAATTACCA
* * *
49361399 AAATACCACTGGTTTGTAAAATTACTA
1 AAATACC-CTAGTTTATAAAATTACCA
* *
49361426 AAATACCCCT-GACTTGTAAAATTACCA
1 AAATA-CCCTAG-TTTATAAAATTACCA
49361453 AAATACCC
1 AAATACCC
49361461 CTAATTTGTG
Statistics
Matches: 100, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.10
27 82 0.82
28 8 0.08
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (26 bp):
AAATACCCTAGTTTATAAAATTACCA
Found at i:49361393 original size:81 final size:81
Alignment explanation
Indices: 49361308--49361482 Score: 203
Period size: 81 Copynumber: 2.2 Consensus size: 81
49361298 CTCGATTTAC
*
49361308 AAAATTATTGAAATACC-CTTAGTTTACAAAATTACCAAAATA-CCCTCGA-TCAGTAAAATTAC
1 AAAATTATTAAAATACCAC-TAGTTTACAAAATTACCAAAATACCCCT-GACT-AGTAAAATTAC
**
49361370 CAAAATACCCCTGGTTTGT
63 CAAAATACCCCTAATTTGT
* * ** * *
49361389 AAAATTACTAAAATACCACTGGTTTGTAAAATTACTAAAATACCCCTGACTTGTAAAATTACCAA
1 AAAATTATTAAAATACCACTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
49361454 AATACCCCTAATTTGT
66 AATACCCCTAATTTGT
* *
49361470 GAAATTATCAAAA
1 AAAATTATTAAAA
49361483 CACTCTCGAT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
81 73 0.92
82 6 0.08
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (81 bp):
AAAATTATTAAAATACCACTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:49361461 original size:27 final size:27
Alignment explanation
Indices: 49361335--49361543 Score: 183
Period size: 27 Copynumber: 7.8 Consensus size: 27
49361325 CTTAGTTTAC
**
49361335 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
49361362 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
49361389 AAAATTACTAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
49361416 AAAATTACTAAAATACCCCTGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
49361443 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * *
49361470 GAAATTATCAAAACA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* * * **
49361497 ATAA-TATCGAAATACCCCTG-TAGGGT
1 AAAATTACCAAAATACCCCTGAT-TTGT
**
49361523 AAAATTACCGGAATACCCCTG
1 AAAATTACCAAAATACCCCTG
49361544 TAGGGTAGAA
Statistics
Matches: 151, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
25 1 0.01
26 17 0.11
27 129 0.85
28 4 0.03
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:49361545 original size:27 final size:27
Alignment explanation
Indices: 49361504--49361744 Score: 319
Period size: 27 Copynumber: 9.0 Consensus size: 27
49361494 TGTATAATAT
*
49361504 CGAAATACCCCTGTAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
49361531 CGGAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
49361558 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
49361585 CG-AATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
49361611 CGAAATACCCTTATAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
49361638 CGCAATA-CCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
49361664 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** *
49361691 TAAAATACCCCTGTAGGGTGGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
49361718 C-AAGATA-CCTTGTGGGGTAAAATTAC
1 CGAA-ATACCCCTGTAGGGTAGAATTAC
49361744 C
1 C
49361745 ATTTTGCCCC
Statistics
Matches: 188, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
26 66 0.35
27 122 0.65
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:49361616 original size:53 final size:53
Alignment explanation
Indices: 49361504--49361744 Score: 317
Period size: 53 Copynumber: 4.5 Consensus size: 53
49361494 TGTATAATAT
* *
49361504 CGAAATACCCCTGTAGGGTAAAATTACCGGAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTACC-GAATACCCCTGTAGGGTAGAATTAC
*
49361558 TGAAATACCCCTGTAGGGTAGAATTACCGAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTACCGAATACCCCTGTAGGGTAGAATTAC
* * *
49361611 CGAAATACCCTTATAGGGTAGAATTATCGCAATA-CCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTACCG-AATACCCCTGTAGGGTAGAATTAC
** *
49361664 CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC-CGAATACCCCTGTAGGGTAGAATTAC
* * *
49361718 C-AAGATA-CCTTGTGGGGTAAAATTACC
1 CGAA-ATACCCCTGTAGGGTAGAATTACC
49361745 ATTTTGCCCC
Statistics
Matches: 166, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
53 114 0.69
54 52 0.31
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (53 bp):
CGAAATACCCCTGTAGGGTAGAATTACCGAATACCCCTGTAGGGTAGAATTAC
Found at i:49361755 original size:80 final size:79
Alignment explanation
Indices: 49361507--49361744 Score: 318
Period size: 80 Copynumber: 3.0 Consensus size: 79
49361497 ATAATATCGA
* * **
49361507 AATACCCCTGTAGGGTAAAATTACCGGAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCCAAATA-CCCTGT
49361572 AGGGTAGAATTACCG
65 AGGGTAGAATTACCG
* *
49361587 AATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAATTATCGC-AATACCCTGT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC-CAAATACCCTGT
49361651 AGGGTAGAATTACCG
65 AGGGTAGAATTACCG
** * *
49361666 AAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTA-CCAAGATACCTTG
1 -AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCCAA-ATACCCTG
* *
49361730 TGGGGTAAAATTACC
64 TAGGGTAGAATTACC
49361745 ATTTTGCCCC
Statistics
Matches: 140, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 23 0.16
80 116 0.83
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (79 bp):
AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCCAAATACCCTGTA
GGGTAGAATTACCG
Found at i:49362223 original size:22 final size:22
Alignment explanation
Indices: 49362171--49362235 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
49362161 TTAAAGCCTT
* *
49362171 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
49362193 CT-ACATATGACTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
49362215 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
49362236 ACGTATTTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:49362474 original size:27 final size:26
Alignment explanation
Indices: 49362394--49362495 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
49362384 ATTCTGTTAA
* * *
49362394 GTGGCTTTGCCACATTATCTATTTCTA
1 GTGGCTTTGCCACAATATCT-GTTCTG
* *
49362421 ATGGCTATGCCACTAATATCTGTTCTG
1 GTGGCTTTGCCAC-AATATCTGTTCTG
*
49362448 GTGGCTTTGCCACAATATTTGTATCTG
1 GTGGCTTTGCCACAATATCTGT-TCTG
* *
49362475 GTGACTCTGCCACAATATCTG
1 GTGGCTTTGCCACAATATCTG
49362496 ATAACTGAGC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 8 0.13
27 48 0.77
28 6 0.10
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (26 bp):
GTGGCTTTGCCACAATATCTGTTCTG
Found at i:49362665 original size:19 final size:19
Alignment explanation
Indices: 49362643--49362700 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
49362633 TTCTGATTTT
49362643 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
49362662 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
49362674 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
49362693 TGATTCTG
1 TGATTCTG
49362701 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:49362670 original size:6 final size:6
Alignment explanation
Indices: 49362632--49362751 Score: 86
Period size: 6 Copynumber: 19.3 Consensus size: 6
49362622 TTGCATTCAC
* * *
49362632 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
49362682 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
49362732 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
49362752 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 6 0.07
6 67 0.74
7 14 0.16
8 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:49362727 original size:37 final size:31
Alignment explanation
Indices: 49362632--49362767 Score: 168
Period size: 31 Copynumber: 4.4 Consensus size: 31
49362622 TTGCATTCAC
*
49362632 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
49362664 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
49362695 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
49362726 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
49362756 TTTCTTATTCTG
1 ATTCTGATTCTG
49362768 TAATGGGTTA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
30 16 0.17
31 68 0.73
32 9 0.10
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:49364413 original size:29 final size:29
Alignment explanation
Indices: 49364371--49364452 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
49364361 TTATTTTTTT
49364371 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
49364400 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
49364429 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
49364453 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:49372289 original size:29 final size:29
Alignment explanation
Indices: 49372247--49372328 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
49372237 TATTTTTTTT
49372247 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
49372276 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
49372305 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
49372329 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:49374579 original size:3 final size:3
Alignment explanation
Indices: 49374571--49374637 Score: 98
Period size: 3 Copynumber: 22.3 Consensus size: 3
49374561 TTAAAGGTAT
49374571 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
49374619 GTA GTA GTA GTA ATA ATA A
1 ATA ATA ATA ATA ATA ATA A
49374638 AGTCCTAAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:49381024 original size:16 final size:16
Alignment explanation
Indices: 49381003--49381037 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
49380993 TTTCAATTTC
*
49381003 TTTGTTATTTAACTTG
1 TTTGTTATTTAACTGG
*
49381019 TTTGTTGTTTAACTGG
1 TTTGTTATTTAACTGG
49381035 TTT
1 TTT
49381038 ATCCCTAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.14, C:0.06, G:0.17, T:0.63
Consensus pattern (16 bp):
TTTGTTATTTAACTGG
Found at i:49382686 original size:25 final size:27
Alignment explanation
Indices: 49382645--49382699 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
49382635 AGTCAAACAT
49382645 GTATTTAGGTCAATTTAAC-CCTAGGG
1 GTATTTAGGTCAATTTAACTCCTAGGG
* *
49382671 GTATTTCGGT-AATTTATCTCCTAGGG
1 GTATTTAGGTCAATTTAACTCCTAGGG
49382697 GTA
1 GTA
49382700 AAACTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.38
Consensus pattern (27 bp):
GTATTTAGGTCAATTTAACTCCTAGGG
Found at i:49384215 original size:26 final size:26
Alignment explanation
Indices: 49384184--49384291 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
49384174 TGAAATGCCC
* *
49384184 ATCATGGAACATTTAACTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
49384210 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
49384236 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
49384262 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
49384288 ATCA
1 ATCA
49384292 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:49390384 original size:40 final size:40
Alignment explanation
Indices: 49390340--49390500 Score: 164
Period size: 40 Copynumber: 4.0 Consensus size: 40
49390330 ATACATATAT
* *
49390340 ACATAGCCCGGTTATAGTGATTCGCTCGATTGTCTTCGGG
1 ACATAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGG
*
49390380 ACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGG
1 ACATAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGG
* * *
49390420 A-ATTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTCGGG
1 ACA-TAGCCCGG-TTATAGTGATTCGCACGATTGCCTTCGGG
* * * * * * * *
49390460 ACTTAACCCGATTTTGGTAACTCGCACGAATGCCTTCGGG
1 ACATAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGG
49390500 A
1 A
49390501 ATTGACCCGG
Statistics
Matches: 106, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
39 3 0.03
40 101 0.95
41 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.28
Consensus pattern (40 bp):
ACATAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGG
Found at i:49390495 original size:80 final size:81
Alignment explanation
Indices: 49390401--49390550 Score: 216
Period size: 80 Copynumber: 1.9 Consensus size: 81
49390391 TTATAGTGAT
* * *
49390401 TCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAGTAAC-TCGCACGAATGCCTTCGGGACTT
1 TCGCACAATTGCCTTCGGGAATTGA-CCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTT
49390464 AACCCGATTTTGGTAAC
65 AACCCGATTTTGGTAAC
*
49390481 TCGCACGAA-TGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTT
1 TCGCAC-AATTGCCTTCGGGAATTGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTT
*
49390545 AGCCCG
65 AACCCG
49390551 GACACCATTC
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
80 34 0.55
81 28 0.45
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
TCGCACAATTGCCTTCGGGAATTGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTTA
ACCCGATTTTGGTAAC
Found at i:49390536 original size:41 final size:39
Alignment explanation
Indices: 49390401--49390552 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 39
49390391 TTATAGTGAT
49390401 TCGCAC-AATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACGAA-TGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* *
49390441 TCGCACGAATGCCTTCGGGACTTAACCC-GATTTTGGTAAC
1 TCGCACGAATGCCTTCGGGAATT-ACCCGGA-TTTAGTAAC
*
49390481 TCGCACGAATGCCTTCGGGAATTGACCCGGATTTAGTCAC
1 TCGCACGAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* * * *
49390521 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACGAATGCCTTCGGGAATTA-CCCGGA
49390553 CACCATTCGA
Statistics
Matches: 96, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
39 2 0.02
40 64 0.67
41 30 0.31
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
TCGCACGAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:49393153 original size:37 final size:37
Alignment explanation
Indices: 49393130--49393273 Score: 173
Period size: 37 Copynumber: 3.9 Consensus size: 37
49393120 ATAGATTTTT
49393130 CTCATTTGAGCTTCATTCAGTATAACAGTAGAAATTG
1 CTCATTTGAGCTTCATTCAGTATAACAGTAGAAATTG
* * * *
49393167 CTCGTTTGAGCTTCATTCAATATAACAGTGGAATTTG
1 CTCATTTGAGCTTCATTCAGTATAACAGTAGAAATTG
* * * **
49393204 TTCGTTTGAGCTTCATTTAGTATAACAAAAG-AATTCG
1 CTCATTTGAGCTTCATTCAGTATAACAGTAGAAATT-G
**
49393241 CTCCCTTGAGCTTCATTCAGTATAACAGTAGAA
1 CTCATTTGAGCTTCATTCAGTATAACAGTAGAA
49393274 CTTGTTATTG
Statistics
Matches: 88, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
36 3 0.03
37 84 0.95
38 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (37 bp):
CTCATTTGAGCTTCATTCAGTATAACAGTAGAAATTG
Found at i:49393218 original size:74 final size:74
Alignment explanation
Indices: 49393134--49393279 Score: 204
Period size: 74 Copynumber: 2.0 Consensus size: 74
49393124 ATTTTTCTCA
** ** *
49393134 TTTGAGCTTCATTCAGTATAACAGTAGAAATT-GCTCGTTTGAGCTTCATTCAATATAACAGTGG
1 TTTGAGCTTCATTCAGTATAACAAAAG-AATTCGCTCCCTTGAGCTTCATTCAATATAACAGTAG
*
49393198 AATTTGTTCG
65 AACTTGTTCG
* *
49393208 TTTGAGCTTCATTTAGTATAACAAAAGAATTCGCTCCCTTGAGCTTCATTCAGTATAACAGTAGA
1 TTTGAGCTTCATTCAGTATAACAAAAGAATTCGCTCCCTTGAGCTTCATTCAATATAACAGTAGA
49393273 ACTTGTT
66 ACTTGTT
49393280 ATTGGCTCGT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
73 4 0.06
74 59 0.94
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (74 bp):
TTTGAGCTTCATTCAGTATAACAAAAGAATTCGCTCCCTTGAGCTTCATTCAATATAACAGTAGA
ACTTGTTCG
Found at i:49396896 original size:21 final size:21
Alignment explanation
Indices: 49396870--49396925 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
49396860 AGAATTAATG
*
49396870 CTACACGGACGTGTTGCCCTT
1 CTACACGGGCGTGTTGCCCTT
49396891 CTACACGGGCGTGTTGCCCTT
1 CTACACGGGCGTGTTGCCCTT
49396912 CTACACGGGCGTGT
1 CTACACGGGCGTGT
49396926 ACCCTATTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.12, C:0.32, G:0.29, T:0.27
Consensus pattern (21 bp):
CTACACGGGCGTGTTGCCCTT
Found at i:49402510 original size:38 final size:38
Alignment explanation
Indices: 49402454--49402528 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
49402444 GATGTGTATT
* * *
49402454 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
49402492 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
49402529 TCGAGCCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:49402581 original size:43 final size:43
Alignment explanation
Indices: 49402505--49402693 Score: 292
Period size: 43 Copynumber: 4.4 Consensus size: 43
49402495 GATAAATCCC
* * * *
49402505 GCAGGCCTAGTGCTGGT-AT-TATATTCGAGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
49402546 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
49402589 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
49402632 GCAGGCTTCGTACCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
49402675 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
49402694 AATGACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
41 15 0.11
42 2 0.01
43 119 0.88
ACGTcount: A:0.14, C:0.24, G:0.33, T:0.29
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:49403093 original size:45 final size:43
Alignment explanation
Indices: 49403010--49403136 Score: 123
Period size: 45 Copynumber: 2.9 Consensus size: 43
49403000 TTGACTTGAT
* * ** *
49403010 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGA-A-AC
* *
49403055 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATAACGGTGAACC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAAAC
* * *
49403098 GATATCGGGCC-TCGAGCCTAACAGGCGA-AATACCGGTGA
1 TAT-TCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGA
49403137 TTTGAGAAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 10 0.14
43 18 0.26
44 8 0.11
45 34 0.49
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (43 bp):
TATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAAAC
Found at i:49407382 original size:45 final size:46
Alignment explanation
Indices: 49407269--49407395 Score: 134
Period size: 46 Copynumber: 2.7 Consensus size: 46
49407259 TTATGAGAGC
* ** *
49407269 CAGTGTAAGACCATGTCTGGGATATGGCATTGGCATTGAGACGAGTG
1 CAGTGTAAGACCATGTCTGGGACAT-GCACCGGCATCGAGACGAGTG
* *
49407316 CTAGTGTAAGA-CATGTCTGGGACATGCACCGGC-TACGAGATGTGT-
1 C-AGTGTAAGACCATGTCTGGGACATGCACCGGCAT-CGAGACGAGTG
*
49407361 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 CAGTGTAAGACCATGTCTGGGACAT-GCACCGGCA
49407396 CAGATATGCT
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
44 9 0.13
45 16 0.24
46 20 0.29
47 14 0.21
48 9 0.13
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGCACCGGCATCGAGACGAGTG
Found at i:49410243 original size:84 final size:84
Alignment explanation
Indices: 49410153--49410314 Score: 227
Period size: 84 Copynumber: 1.9 Consensus size: 84
49410143 TACGTTTTTG
* * * * ** *
49410153 TTTGGAAATAAAACAATATCGAATAAAATCTTGTTCAATGGT-GGAAGTAAATCCTGAAACAGAT
1 TTTGGAAACAAAACAAAATCAAATAAAATCTTGTTAAACCGTGGGAA-TAAATCCCGAAACAGAT
*
49410217 TTTATTTAATTCAATTCGAA
65 TTTATTTAAATCAATTCGAA
*
49410237 TTTGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACCGTGGGAATAAATCCCGAAACAGATT
1 TTTGGAAACAAAACAAAATCAAATAAAATCTTGTTAAACCGTGGGAATAAATCCCGAAACAGATT
49410302 TTATTTAAATCAA
66 TTATTTAAATCAA
49410315 ATAAAATTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
84 64 0.94
85 4 0.06
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31
Consensus pattern (84 bp):
TTTGGAAACAAAACAAAATCAAATAAAATCTTGTTAAACCGTGGGAATAAATCCCGAAACAGATT
TTATTTAAATCAATTCGAA
Found at i:49410379 original size:56 final size:56
Alignment explanation
Indices: 49410252--49410365 Score: 183
Period size: 56 Copynumber: 2.0 Consensus size: 56
49410242 AAACAAAATA
* **
49410252 AAATCAAATAAAATCTTGTTAAACCGTGGGAATAAATCCCGAAACAGATTTTATTT
1 AAATCAAATAAAATTTTGTTAAACAATGGGAATAAATCCCGAAACAGATTTTATTT
* *
49410308 AAATCAAATAAAATTTTGTTAAACAATGGGAATAAATCCTGAAACATATTTTATTT
1 AAATCAAATAAAATTTTGTTAAACAATGGGAATAAATCCCGAAACAGATTTTATTT
49410364 AA
1 AA
49410366 TTCTATTCTA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (56 bp):
AAATCAAATAAAATTTTGTTAAACAATGGGAATAAATCCCGAAACAGATTTTATTT
Found at i:49410405 original size:84 final size:82
Alignment explanation
Indices: 49410308--49410623 Score: 293
Period size: 84 Copynumber: 3.7 Consensus size: 82
49410298 GATTTTATTT
* * *
49410308 AAATCAAATAAAATTTTGTTAAACAATGGGAATAAATCCTGAAACATATTTTATTTAATTCTA-T
1 AAATCAAATAAAATCTTGTTAAA-AA-GGGAATAAATCCCGAAACAGATTTTATTTAATTCTACT
49410372 TCTAATTTGGAAACAAAACA
64 T-TAATTTGGAAACAAAACA
* * * * *
49410392 AAATAAAATAAAATCTTGTTAAATTACGGGAATAAATCCCAAAATAGAATTTATTTAATTCTACT
1 AAATCAAATAAAATCTTGTTAAA--AAGGGAATAAATCCCGAAACAGATTTTATTTAATTCTACT
* *
49410457 TTAATTTGGAAACAAGATA
64 TTAATTTGGAAACAAAACA
*
49410476 AAATCAAATAAAATCTTATTAAAAGGAGGGAATAAATCCCGAAACAGATTTTATTTAATT-TAAT
1 AAATCAAATAAAATCTTGTTAAAA--AGGGAATAAATCCCGAAACAGATTTTATTTAATTCT-A-
*
49410540 TTCTTGT-TTTTGGCAAA-AAAATC-
62 --CTT-TAATTTGG-AAACAAAA-CA
* * * *
49410563 AAATCAAATAAATAT-TTATTAAACGGAGGGAATAAATCCCAAAATAGATTTTATTTAATTC
1 AAATCAAATAAA-ATCTTGTTAAA--AAGGGAATAAATCCCGAAACAGATTTTATTTAATTC
49410624 AATTTCTCTT
Statistics
Matches: 194, Mismatches: 23, Indels: 26
0.80 0.09 0.11
Matches are distributed among these distances:
82 1 0.01
83 1 0.01
84 120 0.62
85 3 0.02
87 63 0.32
88 6 0.03
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (82 bp):
AAATCAAATAAAATCTTGTTAAAAAGGGAATAAATCCCGAAACAGATTTTATTTAATTCTACTTT
AATTTGGAAACAAAACA
Found at i:49410463 original size:140 final size:141
Alignment explanation
Indices: 49410195--49410449 Score: 395
Period size: 140 Copynumber: 1.8 Consensus size: 141
49410185 GTTCAATGGT
* *
49410195 GGAAGTAAATCCTGAAACAGATTTTATTTAATTCAATTCGAATTTGGAAACAAAATAAAATCAAA
1 GGAAGTAAATCCTGAAACAGATTTTATTTAATTCAATTCGAATTTGGAAACAAAACAAAATAAAA
** * *
49410260 TAAAATCTTGTTAAACCGTGGGAATAAATCCCGAAACAGATTTTATTTAAATCAAATAAAATTTT
66 TAAAATCTTGTTAAACCACGGGAATAAATCCCAAAACAGAATTTATTTAAATCAAATAAAATTTT
49410325 GTTAAACAATG
131 GTTAAACAATG
* * *
49410336 GGAA-TAAATCCTGAAACATATTTTATTTAATTCTATTCTAATTTGGAAACAAAACAAAATAAAA
1 GGAAGTAAATCCTGAAACAGATTTTATTTAATTCAATTCGAATTTGGAAACAAAACAAAATAAAA
** *
49410400 TAAAATCTTGTTAAATTACGGGAATAAATCCCAAAATAGAATTTATTTAA
66 TAAAATCTTGTTAAACCACGGGAATAAATCCCAAAACAGAATTTATTTAA
49410450 TTCTACTTTA
Statistics
Matches: 102, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
140 98 0.96
141 4 0.04
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (141 bp):
GGAAGTAAATCCTGAAACAGATTTTATTTAATTCAATTCGAATTTGGAAACAAAACAAAATAAAA
TAAAATCTTGTTAAACCACGGGAATAAATCCCAAAACAGAATTTATTTAAATCAAATAAAATTTT
GTTAAACAATG
Found at i:49410660 original size:87 final size:87
Alignment explanation
Indices: 49410335--49410662 Score: 309
Period size: 87 Copynumber: 3.8 Consensus size: 87
49410325 GTTAAACAAT
** * * * ** * * *
49410335 GGGAATAAATCCTGAAACATATTTTATTTAATTCTA-TTC-TAATTTGGAAACAAAACAAAATAA
1 GGGAATAAATCCCAAAATAGATTTTATTTAATTCAATTTCTTTTTTTGGCAACAAATCAAAATCA
* **
49410398 AATAAA-ATCTTGTT-AAATTA
66 AATAAATATCTTATTAAAAGGA
* * * *
49410418 CGGGAATAAATCCCAAAATAGAATTTATTTAATTC---TACTTTAATTTGGAAACAAGAT-AAAA
1 -GGGAATAAATCCCAAAATAGATTTTATTTAATTCAATTTCTTT-TTTTGGCAACAA-ATCAAAA
49410479 TCAAATAAA-ATCTTATTAAAAGGA
63 TCAAATAAATATCTTATTAAAAGGA
* * * *
49410503 GGGAATAAATCCCGAAACAGATTTTATTTAATTTAATTTCTTGTTTTTGGCAAAAAAATC-AAAT
1 GGGAATAAATCCCAAAATAGATTTTATTTAATTCAATTTCTT-TTTTTGGC-AACAAATCAAAAT
*
49410567 CAAATAAATAT-TTATTAAACGGA
64 CAAATAAATATCTTATTAAAAGGA
*
49410590 GGGAATAAATCCCAAAATAGATTTTATTTAATTCAATTTCTCTTTTTTGGCAACAAATCAAAATG
1 GGGAATAAATCCCAAAATAGATTTTATTTAATTCAATTTCT-TTTTTTGGCAACAAATCAAAATC
*
49410655 TAATAAAT
65 AAATAAAT
49410663 CCATTGAACG
Statistics
Matches: 204, Mismatches: 27, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
82 2 0.01
83 1 0.00
84 90 0.44
85 5 0.02
86 7 0.03
87 91 0.45
88 8 0.04
ACGTcount: A:0.45, C:0.11, G:0.10, T:0.34
Consensus pattern (87 bp):
GGGAATAAATCCCAAAATAGATTTTATTTAATTCAATTTCTTTTTTTGGCAACAAATCAAAATCA
AATAAATATCTTATTAAAAGGA
Found at i:49410770 original size:79 final size:75
Alignment explanation
Indices: 49410659--49410857 Score: 263
Period size: 79 Copynumber: 2.6 Consensus size: 75
49410649 AAAATGTAAT
*
49410659 AAATCCATTGAACGGGGGAATCAATCCTGAAACAAATTTTATTTTACTCATTTTTGGAAATAAAA
1 AAAT-CATTGAACGGGGGAATCAATCCCGAAACAAATTTTATTTTACTCATTTTTGGAAAT-AAA
49410724 TAAAATTTGGAATA
64 -AAAATTTGGAA-A
* * **
49410738 AAATCATTGAACGGCGGGAATCAACCCCGAAACGAATTTTATTTTACTTGTTTTTGGAAATAAAA
1 AAATCATTGAACGG-GGGAATCAATCCCGAAACAAATTTTATTTTACTCATTTTTGGAAATAAAA
49410803 AAATTTGGAAA
65 AAATTTGGAAA
* * * *
49410814 AAATCGTTAAACGATGGGAATCAATCCCGAAACAGATTTTATTT
1 AAATCATTGAACG-GGGGAATCAATCCCGAAACAAATTTTATTT
49410858 ACCTTTAATT
Statistics
Matches: 107, Mismatches: 11, Indels: 7
0.86 0.09 0.06
Matches are distributed among these distances:
76 38 0.36
77 11 0.10
78 13 0.12
79 45 0.42
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (75 bp):
AAATCATTGAACGGGGGAATCAATCCCGAAACAAATTTTATTTTACTCATTTTTGGAAATAAAAA
AATTTGGAAA
Found at i:49410911 original size:65 final size:66
Alignment explanation
Indices: 49410830--49410968 Score: 199
Period size: 66 Copynumber: 2.1 Consensus size: 66
49410820 TTAAACGATG
*
49410830 GGAATCAATCCCGAAACAGATTTTATTTACCTTTAA-TTCCCATTTGGAAATAAAACCAAAAAAA
1 GGAATAAATCCCGAAACAGATTTTATTTACCTTTAATTTCCCATTTGGAAATAAAACCAAAAAAA
49410894 T
66 T
* * * * * * *
49410895 GGAATAAATCCTGAAACATATTTTATTTACTTTTAATTTCTCGTTTGGAAATAAAATCAAAATAA
1 GGAATAAATCCCGAAACAGATTTTATTTACCTTTAATTTCCCATTTGGAAATAAAACCAAAAAAA
49410960 T
66 T
49410961 GGAATAAA
1 GGAATAAA
49410969 ATCTATTGAA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
65 32 0.49
66 33 0.51
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (66 bp):
GGAATAAATCCCGAAACAGATTTTATTTACCTTTAATTTCCCATTTGGAAATAAAACCAAAAAAA
T
Found at i:49412654 original size:19 final size:21
Alignment explanation
Indices: 49412616--49412655 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
49412606 AAATACGAAG
*
49412616 TAGAGAAGAAGGAGATTAAGT
1 TAGAGAAGAACGAGATTAAGT
49412637 TAGAGAAG-ACGA-ATTAAGT
1 TAGAGAAGAACGAGATTAAGT
49412656 GGCGCTTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 3 0.17
21 8 0.44
ACGTcount: A:0.47, C:0.03, G:0.30, T:0.20
Consensus pattern (21 bp):
TAGAGAAGAACGAGATTAAGT
Found at i:49414387 original size:14 final size:13
Alignment explanation
Indices: 49414369--49414406 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
49414359 CAATTAATAT
49414369 AATAAAATTTTAA
1 AATAAAATTTTAA
49414382 ACATAAAA-TTTAA
1 A-ATAAAATTTTAA
49414395 AATTAAAATTTT
1 AA-TAAAATTTT
49414407 TACACAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.05
13 12 0.55
14 9 0.41
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (13 bp):
AATAAAATTTTAA
Found at i:49414935 original size:16 final size:16
Alignment explanation
Indices: 49414914--49414964 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
49414904 TATATATAAC
** *
49414914 ATATTTAATGTAACTA
1 ATATTTAAAATAAATA
49414930 ATATTTAAAATAAATA
1 ATATTTAAAATAAATA
49414946 ATATTTAGAAATAATATA
1 ATATTTA-AAATAA-ATA
49414964 A
1 A
49414965 AATTAAGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
16 20 0.67
17 6 0.20
18 4 0.13
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (16 bp):
ATATTTAAAATAAATA
Found at i:49415625 original size:29 final size:27
Alignment explanation
Indices: 49415557--49415625 Score: 75
Period size: 31 Copynumber: 2.4 Consensus size: 27
49415547 TAGAGTTTCA
*
49415557 CATGTATAATTGCACAAAATTAAGGTT
1 CATGTATAATTGCACAAAATCAAGGTT
* *
49415584 CATGTATACAATTGCATATTAAATCAATGTT
1 CATGTAT--AATTGCACA--AAATCAAGGTT
49415615 CATGTATAATT
1 CATGTATAATT
49415626 CTGAGATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
27 7 0.20
29 12 0.34
31 16 0.46
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.38
Consensus pattern (27 bp):
CATGTATAATTGCACAAAATCAAGGTT
Found at i:49416949 original size:14 final size:13
Alignment explanation
Indices: 49416931--49416959 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
49416921 TAAAAATTTT
49416931 AATAT-TAAAATA
1 AATATATAAAATA
49416943 AATATATAAAATA
1 AATATATAAAATA
49416956 AATA
1 AATA
49416960 ATTTGTAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AATATATAAAATA
Found at i:49417059 original size:16 final size:16
Alignment explanation
Indices: 49417038--49417068 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49417028 TTTTGTATTA
*
49417038 TTTTAATATTAAATAT
1 TTTTAAAATTAAATAT
49417054 TTTTAAAATTAAATA
1 TTTTAAAATTAAATA
49417069 ACGTTAACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTTAAAATTAAATAT
Done.