Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 17 of 378
Found at i:4590500 original size:21 final size:21
Alignment explanation
Indices: 4590474--4590514 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4590464 AGACAAGCGA
* *
4590474 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
4590495 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
4590515 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:4597529 original size:34 final size:34
Alignment explanation
Indices: 4597491--4597559 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
4597481 TTAATGCAAT
4597491 CGCTTCCTTAATATATAATAATCTAGAATTAACC
1 CGCTTCCTTAATATATAATAATCTAGAATTAACC
4597525 CGCTTCCTTAATATATAATAATCTAGAATTAACC
1 CGCTTCCTTAATATATAATAATCTAGAATTAACC
4597559 C
1 C
4597560 TCGCTAGGGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.35
Consensus pattern (34 bp):
CGCTTCCTTAATATATAATAATCTAGAATTAACC
Found at i:4600949 original size:18 final size:16
Alignment explanation
Indices: 4600914--4600960 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
4600904 ATATTATTTA
*
4600914 TATATTTATATTAT-AT
1 TATAATTATATT-TGAT
4600930 TATAAATTATCATTTGAT
1 TAT-AATTAT-ATTTGAT
4600948 TATAATTATATTT
1 TATAATTATATTT
4600961 ATATAAGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 7 0.26
17 12 0.44
18 8 0.30
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (16 bp):
TATAATTATATTTGAT
Found at i:4614513 original size:35 final size:35
Alignment explanation
Indices: 4614467--4614538 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
4614457 AAGGTAACCC
4614467 ATAAAGCTACTAGTTTCCAGAAATGGTTTTGGACT
1 ATAAAGCTACTAGTTTCCAGAAATGGTTTTGGACT
4614502 ATAAAGCTACTAGTTTCCAGAAATGGTTTTGGACT
1 ATAAAGCTACTAGTTTCCAGAAATGGTTTTGGACT
4614537 AT
1 AT
4614539 CTTCGGCTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (35 bp):
ATAAAGCTACTAGTTTCCAGAAATGGTTTTGGACT
Found at i:4618868 original size:11 final size:10
Alignment explanation
Indices: 4618854--4618895 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
4618844 AAACATGAAT
4618854 TAAAAAATTCA
1 TAAAAAATT-A
*
4618865 TAAAAAGTTA
1 TAAAAAATTA
*
4618875 TTAAAAATTA
1 TAAAAAATTA
4618885 TAAAAAATTA
1 TAAAAAATTA
4618895 T
1 T
4618896 TTAAAAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
10 19 0.70
11 8 0.30
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:4618880 original size:10 final size:10
Alignment explanation
Indices: 4618856--4618903 Score: 53
Period size: 10 Copynumber: 4.6 Consensus size: 10
4618846 ACATGAATTA
4618856 AAAAATTCA-T
1 AAAAATT-ATT
4618866 AAAAAGTTATT
1 AAAAA-TTATT
*
4618877 AAAAATTATA
1 AAAAATTATT
4618887 AAAAATTATTT
1 AAAAATTA-TT
4618898 AAAAAT
1 AAAAAT
4618904 ATAGAGAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
10 18 0.55
11 15 0.45
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAAATTATT
Found at i:4618887 original size:20 final size:22
Alignment explanation
Indices: 4618856--4618903 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
4618846 ACATGAATTA
*
4618856 AAAAATTCATAAAAAGTTA-TT
1 AAAAATTCATAAAAAATTATTT
4618877 AAAAATT-ATAAAAAATTATTT
1 AAAAATTCATAAAAAATTATTT
4618898 AAAAAT
1 AAAAAT
4618904 ATAGAGAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAAATTCATAAAAAATTATTT
Found at i:4619818 original size:40 final size:39
Alignment explanation
Indices: 4619737--4619823 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 39
4619727 CTAAAAAAAA
* *
4619737 TTTATAA-CATTTAAAAATTTTCTATATTTTTAATAGTT
1 TTTATAATTATTTAAAAATTTTCTATATTTTTAATAGAT
*
4619775 TTTATAATTATTTATAAA-TTTCTAATAATTTTTAAT-GAAT
1 TTTATAATTATTTAAAAATTTTCT-AT-ATTTTTAATAG-AT
4619815 TTTATAATT
1 TTTATAATT
4619824 CATGCTAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
38 12 0.29
39 11 0.26
40 19 0.45
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.56
Consensus pattern (39 bp):
TTTATAATTATTTAAAAATTTTCTATATTTTTAATAGAT
Found at i:4624890 original size:15 final size:15
Alignment explanation
Indices: 4624870--4624904 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
4624860 ATTTTAATAA
* *
4624870 TTAAATTTATATTTT
1 TTAAATTTAAAATTT
4624885 TTAAATTTAAAATTT
1 TTAAATTTAAAATTT
4624900 TTAAA
1 TTAAA
4624905 AAATTAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTAAATTTAAAATTT
Found at i:4626384 original size:24 final size:24
Alignment explanation
Indices: 4626356--4626534 Score: 128
Period size: 24 Copynumber: 7.1 Consensus size: 24
4626346 CCAAAATATT
* * *
4626356 ATATAAAACAATTTGAAGTCAATA
1 ATATAAAACAATTTAAAATAAATA
* *
4626380 ATATAAAACAATTTCAAGTAAATA
1 ATATAAAACAATTTAAAATAAATA
4626404 ATATGCAAAACAAATTTAAAATAAATA
1 ATAT--AAAAC-AATTTAAAATAAATA
*
4626431 ATATACAAAACAATTTAAAATGAATA
1 ATAT--AAAACAATTTAAAATAAATA
* *
4626457 ATATATAAGACACTTTAAAAT-AA-C
1 ATATA-AA-ACAATTTAAAATAAATA
* * *
4626481 ATATAAAAGAGTTTAAGATAAATA
1 ATATAAAACAATTTAAAATAAATA
* *
4626505 ATACGGAAAAAGAAATTTAAAATAAATA
1 ATA---TAAAA-CAATTTAAAATAAATA
4626533 AT
1 AT
4626535 GTACAAAAAC
Statistics
Matches: 128, Mismatches: 16, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
22 9 0.07
23 4 0.03
24 35 0.27
25 4 0.03
26 34 0.27
27 27 0.21
28 15 0.12
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (24 bp):
ATATAAAACAATTTAAAATAAATA
Found at i:4626456 original size:26 final size:26
Alignment explanation
Indices: 4626349--4626567 Score: 137
Period size: 26 Copynumber: 8.4 Consensus size: 26
4626339 ATATGCACCA
* * * *
4626349 AAATATTATATAAAACAATTTGAAGT
1 AAATAATATACAAAACAATTTAAAAT
* * *
4626375 CAATAATAT--AAAACAATTTCAAGT
1 AAATAATATACAAAACAATTTAAAAT
*
4626399 AAATAATATGCAAAACAAATTTAAAAT
1 AAATAATATACAAAAC-AATTTAAAAT
4626426 AAATAATATACAAAACAATTTAAAAT
1 AAATAATATACAAAACAATTTAAAAT
* * * *
4626452 GAATAATATATAAGACACTTTAAAAT
1 AAATAATATACAAAACAATTTAAAAT
* * * *
4626478 -AA-CATAT--AAAAGAGTTTAAGAT
1 AAATAATATACAAAACAATTTAAAAT
* *
4626500 AAATAATACGGA-AAAAGAAATTTAAAAT
1 AAATAATA--TACAAAA-CAATTTAAAAT
* *
4626528 AAATAATGTACAAAAACAGTTTAAAAAT
1 AAATAATATAC-AAAACAATTT-AAAAT
4626556 AATATATATATA
1 AA-ATA-ATATA
4626568 TATATATAAA
Statistics
Matches: 153, Mismatches: 26, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
22 11 0.07
23 2 0.01
24 29 0.19
25 2 0.01
26 45 0.29
27 31 0.20
28 26 0.17
29 3 0.02
30 4 0.03
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.28
Consensus pattern (26 bp):
AAATAATATACAAAACAATTTAAAAT
Found at i:4626540 original size:102 final size:103
Alignment explanation
Indices: 4626380--4626567 Score: 258
Period size: 102 Copynumber: 1.8 Consensus size: 103
4626370 GAAGTCAATA
* *
4626380 ATATAAAACAATTTCAAGTAAATAATATGCAAAACAAATTTAAAATAAATAATATAC-AAAACAA
1 ATATAAAACAATTTCAAGTAAATAATAGGAAAAACAAATTTAAAATAAATAATATACAAAAACAA
4626444 TTT-AAAATGAATA-ATATATAAGACACTTTAAAATAAC
66 TTTAAAAAT-AATATATATATAAGACACTTTAAAATAAC
* * * *
4626481 ATATAAAAGAGTTT-AAGATAAATAATACGGAAAAAGAAATTTAAAATAAATAATGTACAAAAAC
1 ATATAAAACAATTTCAAG-TAAATAATA-GGAAAAACAAATTTAAAATAAATAATATACAAAAAC
*
4626545 AGTTTAAAAATAATATATATATA
64 AATTTAAAAATAATATATATATA
4626568 TATATATAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
100 3 0.04
101 21 0.28
102 26 0.35
103 13 0.17
104 12 0.16
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (103 bp):
ATATAAAACAATTTCAAGTAAATAATAGGAAAAACAAATTTAAAATAAATAATATACAAAAACAA
TTTAAAAATAATATATATATAAGACACTTTAAAATAAC
Found at i:4626690 original size:25 final size:25
Alignment explanation
Indices: 4626653--4626743 Score: 96
Period size: 25 Copynumber: 3.6 Consensus size: 25
4626643 TGATAATAGT
* *
4626653 TTAAAATACATAATATGTGAAAAAC
1 TTAAAATAAATAATATATGAAAAAC
* *
4626678 TTAAAACAAATAATA-AT-AAAACAGT
1 TTAAAATAAATAATATATGAAAA-A-C
*
4626703 TTAAAATAAATAATATAAGAAAAAAC
1 TTAAAATAAATAATATATG-AAAAAC
4626729 TTAAAATAAATAATA
1 TTAAAATAAATAATA
4626744 ATAACAAAAC
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
23 4 0.07
24 2 0.04
25 27 0.50
26 16 0.30
27 1 0.02
28 4 0.07
ACGTcount: A:0.64, C:0.05, G:0.04, T:0.26
Consensus pattern (25 bp):
TTAAAATAAATAATATATGAAAAAC
Found at i:4626709 original size:50 final size:51
Alignment explanation
Indices: 4626650--4626747 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 51
4626640 ACTTGATAAT
* **
4626650 AGTTTAAAATACATAATATGTG-AAAAACTTAAAACAAATAATAATAAAAC
1 AGTTTAAAATAAATAATATAAGAAAAAACTTAAAACAAATAATAATAAAAC
*
4626700 AGTTTAAAATAAATAATATAAGAAAAAACTTAAAATAAATAATAATAA
1 AGTTTAAAATAAATAATATAAGAAAAAACTTAAAACAAATAATAATAA
4626748 CAAAACAGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
50 19 0.44
51 24 0.56
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.27
Consensus pattern (51 bp):
AGTTTAAAATAAATAATATAAGAAAAAACTTAAAACAAATAATAATAAAAC
Found at i:4628341 original size:44 final size:44
Alignment explanation
Indices: 4628245--4628581 Score: 308
Period size: 44 Copynumber: 7.7 Consensus size: 44
4628235 CTTCAATCCA
* * * *
4628245 CTCCACTGCAACGTT-AGGGAGATTAG-TCTTGTAGCTTCAATCTT
1 CTCCACTGCAAC-TTCAGGGAGATAAGAT-TTGTGGCTTCAACCTG
** * * *
4628289 CTTTACTGCAACTTCAGGAAGATAAGATTTGTGGCATCAACCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAACCTG
* **
4628333 CTCCACTGCAACTTTC-GGGAGATAAGGTTTGTGG-TTTTACTCTG
1 CTCCACTGCAAC-TTCAGGGAGATAAGATTTGTGGCTTCAAC-CTG
* * *
4628377 CTCCACTGCAACTTCAGGGAGATAAGATTAGTGGCTTAAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAACCTG
* * *
4628421 CTCCACTACAACTTCAGGGAGATAAGATTCGCT-ACTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTG-TGGCTTCAACCTG
* * *
4628465 CTCTAGTGCAACTTCAGGGAGATAAGGTTTGTGG-TTCTAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTC-AACCTG
* * * *
4628509 CTCCGCTGCAACTTCAGGGAGATAAGATTTGTGGGTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAACCTG
* * * * *
4628553 TTCCCCTGTAATTTCAAGGAGATAAGATT
1 CTCCACTGCAACTTCAGGGAGATAAGATT
4628582 CGTTATAGTG
Statistics
Matches: 240, Mismatches: 43, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
43 12 0.05
44 218 0.91
45 10 0.04
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAACCTG
Found at i:4628485 original size:132 final size:132
Alignment explanation
Indices: 4628245--4628584 Score: 384
Period size: 132 Copynumber: 2.6 Consensus size: 132
4628235 CTTCAATCCA
* * * * ** *
4628245 CTCCACTGCAACGTT-AGGGAGATTAG-TCTTGTAGCTTCAATCTTCTTTACTGCAACTTCAGGA
1 CTCCACTGCAAC-TTCAGGGAGATAAGAT-TTGTGGCTTAAATCTGCTCCACTGCAACTTCAGGG
* * *
4628308 AGATAAGATTTGTGGCATCAACCTACTCCACTGCAACTTTCGGGAGATAAGGTTTGTGGTT-TTA
64 AGATAAGATTCGTGACATCAACCTACTCCACTGCAACTTTCGGGAGATAAGGTTTGTGGTTCTAA
4628372 CTCTG
129 C-CTG
* *
4628377 CTCCACTGCAACTTCAGGGAGATAAGATTAGTGGCTTAAATCTGCTCCACTACAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTAAATCTGCTCCACTGCAACTTCAGGGAG
* * * *
4628442 ATAAGATTCGCT-ACTTCAACCTGCTCTAGTGCAAC-TTCAGGGAGATAAGGTTTGTGGTTCTAA
66 ATAAGATTCG-TGACATCAACCTACTCCACTGCAACTTTC-GGGAGATAAGGTTTGTGGTTCTAA
4628505 CCTG
129 CCTG
* * * * * * * *
4628509 CTCCGCTGCAACTTCAGGGAGATAAGATTTGTGGGTTTAATCTGTTCCCCTGTAATTTCAAGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTAAATCTGCTCCACTGCAACTTCAGGGAG
4628574 ATAAGATTCGT
66 ATAAGATTCGT
4628585 TATAGTGATT
Statistics
Matches: 177, Mismatches: 26, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
131 6 0.03
132 166 0.94
133 5 0.03
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (132 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTAAATCTGCTCCACTGCAACTTCAGGGAG
ATAAGATTCGTGACATCAACCTACTCCACTGCAACTTTCGGGAGATAAGGTTTGTGGTTCTAACC
TG
Found at i:4638460 original size:24 final size:24
Alignment explanation
Indices: 4638433--4638611 Score: 130
Period size: 26 Copynumber: 7.1 Consensus size: 24
4638423 CCAAAATATT
* * *
4638433 ATATAAAACAATTTGAAGTCAATA
1 ATATAAAACAATTTAAAATAAATA
*
4638457 ATATAAAACAATTTCAAGA-AAATA
1 ATATAAAACAATTT-AAAATAAATA
4638481 ATATGCAAAACAAATTTAAAATAAATA
1 ATAT--AAAAC-AATTTAAAATAAATA
*
4638508 ATAAACAAAACAATTTAAAATAAATA
1 AT--ATAAAACAATTTAAAATAAATA
* *
4638534 ATATATAAGACACTTTAAAAT-AA-C
1 ATATA-AA-ACAATTTAAAATAAATA
* * *
4638558 ATATAAAAGAGTTTAAGATAAATA
1 ATATAAAACAATTTAAAATAAATA
*
4638582 ATATGTAAAAAGAAATTTAAAATAAATA
1 ATA--T-AAAA-CAATTTAAAATAAATA
4638610 AT
1 AT
4638612 GTACAAAAAC
Statistics
Matches: 124, Mismatches: 16, Indels: 26
0.75 0.10 0.16
Matches are distributed among these distances:
22 9 0.07
23 4 0.03
24 32 0.26
25 5 0.04
26 37 0.30
27 21 0.17
28 15 0.12
29 1 0.01
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (24 bp):
ATATAAAACAATTTAAAATAAATA
Found at i:4638580 original size:26 final size:28
Alignment explanation
Indices: 4638551--4638610 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
4638541 AGACACTTTA
* *
4638551 AAATAACATAT-AAAAG-AGTTTAAGAT
1 AAATAACATATAAAAAGAAATTTAAAAT
* *
4638577 AAATAATATGTAAAAAGAAATTTAAAAT
1 AAATAACATATAAAAAGAAATTTAAAAT
4638605 AAATAA
1 AAATAA
4638611 TGTACAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 9 0.32
27 5 0.18
28 14 0.50
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.27
Consensus pattern (28 bp):
AAATAACATATAAAAAGAAATTTAAAAT
Found at i:4638618 original size:102 final size:105
Alignment explanation
Indices: 4638457--4638647 Score: 266
Period size: 102 Copynumber: 1.8 Consensus size: 105
4638447 GAAGTCAATA
*
4638457 ATATAAAACAATTTCAAGAAAATAATATGCAAAACAAATTTAAAATAAATAATAAAC-AAAACAA
1 ATATAAAACAATTTCAAGAAAATAATATGAAAAACAAATTTAAAATAAATAATAAACAAAAACAA
4638521 TTT-AAAATAA-ATA-ATATATAAGACACTTTAAAATAAC
66 TTTAAAAATAATATATATATATAAGACACTTTAAAATAAC
* * * **
4638558 ATATAAAAGAGTTT-AAGATAAATAATATGTAAAAAGAAATTTAAAATAAATAATGTACAAAAAC
1 ATATAAAACAATTTCAAGA-AAATAATATG-AAAAACAAATTTAAAATAAATAATAAACAAAAAC
*
4638622 AGTTTAAAAATAATATATATATATAA
64 AATTTAAAAATAATATATATATATAA
4638648 ATATATATAT
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
100 4 0.05
101 22 0.29
102 24 0.31
103 9 0.12
104 7 0.09
105 3 0.04
106 8 0.10
ACGTcount: A:0.61, C:0.06, G:0.05, T:0.28
Consensus pattern (105 bp):
ATATAAAACAATTTCAAGAAAATAATATGAAAAACAAATTTAAAATAAATAATAAACAAAAACAA
TTTAAAAATAATATATATATATAAGACACTTTAAAATAAC
Found at i:4638636 original size:27 final size:25
Alignment explanation
Indices: 4638577--4638636 Score: 61
Period size: 27 Copynumber: 2.3 Consensus size: 25
4638567 AGTTTAAGAT
4638577 AAATAAT-ATGTAAAAAGAAATTTA
1 AAATAATAATGTAAAAAGAAATTTA
*
4638601 AAATAAATAATGTACAAAA-ACAGTTTAA
1 AAAT-AATAATGTA-AAAAGA-AATTT-A
4638629 AAATAATA
1 AAATAATA
4638637 TATATATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 6 0.20
27 12 0.40
28 5 0.17
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (25 bp):
AAATAATAATGTAAAAAGAAATTTA
Found at i:4638771 original size:25 final size:25
Alignment explanation
Indices: 4638734--4638824 Score: 96
Period size: 25 Copynumber: 3.6 Consensus size: 25
4638724 TGATAATAGT
* *
4638734 TTAAAATACATAATATGTGAAAAAC
1 TTAAAATAAATAATATATGAAAAAC
* *
4638759 TTAAAACAAATAATA-AT-AAAACGAT
1 TTAAAATAAATAATATATGAAAA--AC
*
4638784 TTAAAATAAATAATATAAGAAAAAAC
1 TTAAAATAAATAATATATG-AAAAAC
4638810 TTAAAATAAATAATA
1 TTAAAATAAATAATA
4638825 ATAACAAAAC
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
23 4 0.07
24 1 0.02
25 28 0.52
26 17 0.31
28 4 0.07
ACGTcount: A:0.64, C:0.05, G:0.04, T:0.26
Consensus pattern (25 bp):
TTAAAATAAATAATATATGAAAAAC
Found at i:4638790 original size:50 final size:51
Alignment explanation
Indices: 4638733--4638828 Score: 149
Period size: 51 Copynumber: 1.9 Consensus size: 51
4638723 TTGATAATAG
* **
4638733 TTTAAAATACATAATATGTG-AAAAACTTAAAACAAATAATAATAAAACGA
1 TTTAAAATAAATAATATAAGAAAAAACTTAAAACAAATAATAATAAAACGA
*
4638783 TTTAAAATAAATAATATAAGAAAAAACTTAAAATAAATAATAATAA
1 TTTAAAATAAATAATATAAGAAAAAACTTAAAACAAATAATAATAA
4638829 CAAAACAGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
50 17 0.41
51 24 0.59
ACGTcount: A:0.64, C:0.05, G:0.04, T:0.27
Consensus pattern (51 bp):
TTTAAAATAAATAATATAAGAAAAAACTTAAAACAAATAATAATAAAACGA
Found at i:4640019 original size:11 final size:12
Alignment explanation
Indices: 4639991--4640026 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
4639981 GGGCTTGGGG
4639991 TTAATTTGGGTT
1 TTAATTTGGGTT
4640003 TGTAA-TTGGGTT
1 T-TAATTTGGGTT
4640015 TTAATTTGGGTT
1 TTAATTTGGGTT
4640027 ATTTGTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 3 0.14
12 16 0.73
13 3 0.14
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.56
Consensus pattern (12 bp):
TTAATTTGGGTT
Found at i:4643460 original size:23 final size:25
Alignment explanation
Indices: 4643434--4643480 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
4643424 TATTATTCAT
*
4643434 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
4643457 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
4643481 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:4643801 original size:46 final size:46
Alignment explanation
Indices: 4643741--4644090 Score: 437
Period size: 46 Copynumber: 8.0 Consensus size: 46
4643731 TTTGACGTGA
* * * * * *
4643741 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
4643787 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
4643833 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
4643879 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
4643925 TGCCATGGTATCTTTCAATCATGGTCTT--AC---GC--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
4643963 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
4644009 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
4644047 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
4644091 AGAGCACACT
Statistics
Matches: 268, Mismatches: 19, Indels: 34
0.83 0.06 0.11
Matches are distributed among these distances:
38 65 0.24
39 2 0.01
40 5 0.02
41 2 0.01
43 2 0.01
44 5 0.02
45 6 0.02
46 181 0.68
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:4643857 original size:92 final size:85
Alignment explanation
Indices: 4643785--4644090 Score: 447
Period size: 84 Copynumber: 3.5 Consensus size: 85
4643775 TTTCTGTCAT
** * * *
4643785 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
4643850 ACCATGGTCTTACACATCTCATATCAG
66 ACCATGGTCTTAC-CA---C---TCAG
*
4643877 ATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
*
4643942 ATCATGGTCTTACGCA--CAG
66 ACCATGGTCTTAC-CACTCAG
4643961 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
*
4644026 ACCATGGTCTTA-CACACAG
66 ACCATGGTCTTACCACTCAG
4644045 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
4644091 AGAGCACACT
Statistics
Matches: 202, Mismatches: 10, Indels: 12
0.90 0.04 0.05
Matches are distributed among these distances:
82 2 0.01
84 127 0.63
92 73 0.36
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (85 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
ACCATGGTCTTACCACTCAG
Found at i:4643971 original size:38 final size:38
Alignment explanation
Indices: 4643920--4644079 Score: 230
Period size: 38 Copynumber: 4.0 Consensus size: 38
4643910 CATTTCATAT
* *
4643920 CAGGTTGCCATGGTATCTTTCAATCATGGTCTTACGCA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
4643958 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A
4644003 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 -CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
4644042 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
4644080 TTTCATATCA
Statistics
Matches: 112, Mismatches: 2, Indels: 16
0.86 0.02 0.12
Matches are distributed among these distances:
38 70 0.62
39 1 0.01
40 2 0.02
41 1 0.01
43 1 0.01
44 3 0.03
45 1 0.01
46 33 0.29
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:4648713 original size:54 final size:55
Alignment explanation
Indices: 4648629--4648742 Score: 221
Period size: 54 Copynumber: 2.1 Consensus size: 55
4648619 TAACTTTTTC
4648629 TTTTCTTTTCTTTTTTTTTTTGTCTTAATTTCTTTTTCAAAATTATATTTTATGA
1 TTTTCTTTTCTTTTTTTTTTTGTCTTAATTTCTTTTTCAAAATTATATTTTATGA
4648684 TTTTCTTTTC-TTTTTTTTTTGTCTTAATTTCTTTTTCAAAATTATATTTTATGA
1 TTTTCTTTTCTTTTTTTTTTTGTCTTAATTTCTTTTTCAAAATTATATTTTATGA
4648738 TTTTC
1 TTTTC
4648743 AATTTTCATT
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
54 49 0.83
55 10 0.17
ACGTcount: A:0.18, C:0.10, G:0.04, T:0.69
Consensus pattern (55 bp):
TTTTCTTTTCTTTTTTTTTTTGTCTTAATTTCTTTTTCAAAATTATATTTTATGA
Found at i:4648843 original size:18 final size:19
Alignment explanation
Indices: 4648805--4648843 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
4648795 TCAAAATGGA
*
4648805 TTATTTTAAATTTTTAAAT
1 TTATTTTAAATTTATAAAT
*
4648824 TTATTTT-AATTTATATAT
1 TTATTTTAAATTTATAAAT
4648842 TT
1 TT
4648844 TGATTTTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTTTAAATTTATAAAT
Found at i:4660199 original size:18 final size:19
Alignment explanation
Indices: 4660157--4660199 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
4660147 AAATTTTCTA
**
4660157 TTTCATTCAAACAAGTAGT
1 TTTCATTCAAACAAGTAAC
*
4660176 TTTCATTCACACAA-TAAC
1 TTTCATTCAAACAAGTAAC
4660194 TTTCAT
1 TTTCAT
4660200 ATAAAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.35, C:0.21, G:0.05, T:0.40
Consensus pattern (19 bp):
TTTCATTCAAACAAGTAAC
Found at i:4669498 original size:5 final size:5
Alignment explanation
Indices: 4669488--4669525 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
4669478 TTCATTTTTC
4669488 TTCTT TTC-T TTCTT TTCTTT TTCTT TTCTTT TTCTT TT
1 TTCTT TTCTT TTCTT TTC-TT TTCTT TTC-TT TTCTT TT
4669526 TGTTGTTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
4 4 0.13
5 16 0.53
6 10 0.33
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTCTT
Found at i:4669511 original size:6 final size:6
Alignment explanation
Indices: 4669476--4669526 Score: 54
Period size: 6 Copynumber: 8.7 Consensus size: 6
4669466 TTAGTTTAGG
*
4669476 TTTTCAT TTTTCT TCTTT-T CTTTC- TTTTCT TTTTC- TTTTCT TTTTCT
1 TTTTC-T TTTTCT T-TTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
4669523 TTTT
1 TTTT
4669527 GTTGTTGAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
5 12 0.32
6 18 0.47
7 8 0.21
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTCT
Found at i:4669512 original size:11 final size:11
Alignment explanation
Indices: 4669476--4669525 Score: 66
Period size: 11 Copynumber: 4.4 Consensus size: 11
4669466 TTAGTTTAGG
4669476 TTTTCATTTTTC
1 TTTTC-TTTTTC
4669488 TTCTT-TTCTTTC
1 TT-TTCTT-TTTC
4669500 TTTTCTTTTTC
1 TTTTCTTTTTC
4669511 TTTTCTTTTTC
1 TTTTCTTTTTC
4669522 TTTT
1 TTTT
4669526 TGTTGTTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
11 23 0.66
12 10 0.29
13 2 0.06
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:4670192 original size:30 final size:30
Alignment explanation
Indices: 4670156--4670300 Score: 159
Period size: 30 Copynumber: 4.8 Consensus size: 30
4670146 ACTTTTCTCA
* *
4670156 ACTAGCCACAACTTTTCCATCACCAACTCC
1 ACTAGCCACAACTTCTCCACCACCAACTCC
** *
4670186 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACAACTTCTCCACCACCAACTCC
* *
4670216 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACAACTTCTCCACCACCAACTCC
** *
4670246 ACTAGCCAC-ACTTGCTCCATTACCTACTCC
1 ACTAGCCACAACTT-CTCCACCACCAACTCC
*
4670276 ACTAACCAC-ACTTGCTCCACCACCA
1 ACTAGCCACAACTT-CTCCACCACCA
4670301 CTTGTACCTA
Statistics
Matches: 99, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
29 3 0.03
30 96 0.97
ACGTcount: A:0.28, C:0.47, G:0.04, T:0.21
Consensus pattern (30 bp):
ACTAGCCACAACTTCTCCACCACCAACTCC
Found at i:4670909 original size:25 final size:25
Alignment explanation
Indices: 4670881--4671023 Score: 85
Period size: 25 Copynumber: 5.6 Consensus size: 25
4670871 TACGTGTATA
* *
4670881 TATATATATTTTATACTATTTTATG
1 TATATATATTTAATACTATATTATG
* * *
4670906 TATATATCTTTAATATTATATTATTTA
1 TATATATATTTAATACTATATTA--TG
** *
4670933 TATATATATTTTTTACATGTTATCTTATG
1 TATATATA---TTTA-ATACTATATTATG
*
4670962 TATATAT-CTT-A-ACTATATTATG
1 TATATATATTTAATACTATATTATG
* * *
4670984 TATGTATTTTTAACACTATATTATG
1 TATATATATTTAATACTATATTATG
* *
4671009 TACATATTTTTAATA
1 TATATATATTTAATA
4671024 TTATCACGTA
Statistics
Matches: 91, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
22 14 0.15
23 3 0.03
24 1 0.01
25 44 0.48
27 8 0.09
29 8 0.09
30 4 0.04
31 9 0.10
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATG
Found at i:4670932 original size:29 final size:28
Alignment explanation
Indices: 4670875--4670990 Score: 87
Period size: 29 Copynumber: 4.2 Consensus size: 28
4670865 CTATATTACG
* * * *
4670875 TGTATATATATATATTTTATACTATTTTA
1 TGTATATATCTTTATATTATATTA-TTTA
4670904 TGTATATATCTTTAATATTATATTATTTA
1 TGTATATATCTTT-ATATTATATTATTTA
* * * *
4670933 TATATATAT-TTTTTA-CATGTTATCTTA
1 TGTATATATCTTTATATTATATTAT-TTA
* *
4670960 TGTATATATC-TTA-ACTATATTATGTA
1 TGTATATATCTTTATATTATATTATTTA
4670986 TGTAT
1 TGTAT
4670991 TTTTAACACT
Statistics
Matches: 70, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
26 14 0.20
27 21 0.30
28 3 0.04
29 23 0.33
30 9 0.13
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (28 bp):
TGTATATATCTTTATATTATATTATTTA
Found at i:4670941 original size:31 final size:31
Alignment explanation
Indices: 4670891--4670968 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
4670881 TATATATATT
* *
4670891 TTATACTATTT-TATGTATATATCTTTA-ATA
1 TTATATTATTTATATATATAT-TCTTTACATA
* *
4670921 TTATATTATTTATATATATATTTTTTACATG
1 TTATATTATTTATATATATATTCTTTACATA
* *
4670952 TTATCTTATGTATATAT
1 TTATATTATTTATATAT
4670969 CTTAACTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
30 15 0.38
31 25 0.62
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (31 bp):
TTATATTATTTATATATATATTCTTTACATA
Found at i:4671204 original size:16 final size:15
Alignment explanation
Indices: 4671180--4671227 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
4671170 TAATTATTAT
*
4671180 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
4671196 TATTTTAATATTTTA
1 TATTTTAATATTTTA
4671211 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
4671227 T
1 T
4671228 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:4671215 original size:7 final size:8
Alignment explanation
Indices: 4671180--4671231 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
4671170 TAATTATTAT
*
4671180 TATTCTAA
1 TATTTTAA
*
4671188 TATTTTGA
1 TATTTTAA
4671196 TATTTTAA
1 TATTTTAA
4671204 TATTTT-A
1 TATTTTAA
4671211 TATTTTATA
1 TATTTTA-A
*
4671220 TATTTTAT
1 TATTTTAA
4671228 TATT
1 TATT
4671232 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:4673309 original size:46 final size:46
Alignment explanation
Indices: 4673244--4673701 Score: 683
Period size: 46 Copynumber: 10.0 Consensus size: 46
4673234 TTATCTTTGA
* * * * *
4673244 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
* * *
4673290 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * *
4673336 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * *
4673382 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* *
4673428 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
4673474 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTCATAT
4673520 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTCATAT
4673566 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTCATAT
*
4673612 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
4673658 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTCAT
4673702 TTCAGAGAGC
Statistics
Matches: 390, Mismatches: 18, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
45 4 0.01
46 386 0.99
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:4675858 original size:11 final size:11
Alignment explanation
Indices: 4675842--4675893 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
4675832 TATACTAAAT
4675842 AAATAATAATA
1 AAATAATAATA
*
4675853 AAATAAT-ATT
1 AAATAATAATA
* *
4675863 AAATATCTCATA
1 AAATA-ATAATA
*
4675875 AAATATTAATA
1 AAATAATAATA
4675886 AAATAATA
1 AAATAATA
4675894 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:4676547 original size:12 final size:12
Alignment explanation
Indices: 4676530--4676560 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
4676520 AACATTTTGA
4676530 CATTCATGCATT
1 CATTCATGCATT
4676542 CATTCATGCATT
1 CATTCATGCATT
4676554 CATTCAT
1 CATTCAT
4676561 ACACTGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:4682178 original size:35 final size:35
Alignment explanation
Indices: 4682151--4682316 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
4682141 CATGGCAAAG
*
4682151 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
4682186 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
4682221 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
4682261 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
4682296 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
4682317 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:4682270 original size:75 final size:75
Alignment explanation
Indices: 4682151--4682321 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
4682141 CATGGCAAAG
** *
4682151 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
4682210 CCATACTGAGC
65 CCATACCGAGC
4682221 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
4682286 CATACCGAGT
66 CATACCGAGC
**
4682296 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
4682322 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:4689645 original size:35 final size:35
Alignment explanation
Indices: 4689618--4689783 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
4689608 CATGGCAAAG
*
4689618 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
4689653 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
4689688 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
4689728 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
4689763 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
4689784 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:4689737 original size:75 final size:75
Alignment explanation
Indices: 4689618--4689788 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
4689608 CATGGCAAAG
** *
4689618 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
4689677 CCATACTGAGC
65 CCATACCGAGC
4689688 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
4689753 CATACCGAGT
66 CATACCGAGC
**
4689763 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
4689789 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:4695272 original size:74 final size:73
Alignment explanation
Indices: 4695019--4695712 Score: 863
Period size: 73 Copynumber: 9.3 Consensus size: 73
4695009 CTTTTCAAGG
* * * * * * *
4695019 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGATACTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
4695084 GTTTTTC-
66 GTTTGTCA
* * *
4695091 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTAACTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
4695156 GTTTGTCA
66 GTTTGTCA
* * *
4695164 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* *
4695229 ATTTGTAAA
66 GTTTGT-CA
* **
4695238 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
* *
4695302 TCTGTTCGTAAAAAA
63 TCTGTTTGT----CA
* *
4695317 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTCAATTTC
*
4695382 TGTTTTTCA
65 TGTTTGTCA
**
4695391 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
4695456 GTTTGTCA
66 GTTTGTCA
* * **
4695464 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
* *
4695528 TCTGTTCGTAAAAAA
63 TCTGTTTGT----CA
* *
4695543 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTCAATTTC
*
4695608 TGTTTTTCA
65 TGTTTGTCA
* * *
4695617 AAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACCCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
4695682 GTTTGTCA
66 GTTTGTCA
*
4695690 AAAATTAACTCATATTGCGAGAG
1 AAAATCAACTCATATTGCGAGAG
4695713 TTTTACAGAG
Statistics
Matches: 543, Mismatches: 60, Indels: 37
0.85 0.09 0.06
Matches are distributed among these distances:
72 63 0.12
73 155 0.29
74 140 0.26
75 27 0.05
76 25 0.05
77 22 0.04
78 30 0.06
79 77 0.14
80 4 0.01
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTGTCA
Found at i:4695486 original size:226 final size:226
Alignment explanation
Indices: 4695091--4695712 Score: 1084
Period size: 226 Copynumber: 2.8 Consensus size: 226
4695081 TTTGTTTTTC
* * ** *
4695091 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTA-ACTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
* * **
4695155 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATT
66 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
* * * *
4695220 TCAATTTATATTTGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
131 TCAATTTCTGTTTGT-CAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
4695285 CTGAGGTCTTTTCAATTTCTGTTCGTAAAAAA
195 CTGAGGTCTTTTCAATTTCTGTTCGTAAAAAA
4695317 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
*
4695382 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGGTAATT
66 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
4695447 TCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGC
131 TCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGC
4695512 TGAGGTCTTTTCAATTTCTGTTCGTAAAAAA
196 TGAGGTCTTTTCAATTTCTGTTCGTAAAAAA
4695543 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
* *
4695608 TGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACCCTGAGGTAATT
66 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
4695673 TCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAG
131 TCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAG
4695713 TTTTACAGAG
Statistics
Matches: 378, Mismatches: 17, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
226 297 0.79
227 81 0.21
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32
Consensus pattern (226 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
TCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGC
TGAGGTCTTTTCAATTTCTGTTCGTAAAAAA
Found at i:4695622 original size:300 final size:294
Alignment explanation
Indices: 4695019--4695712 Score: 966
Period size: 300 Copynumber: 2.3 Consensus size: 294
4695009 CTTTTCAAGG
* * * * *
4695019 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGATACTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTAATTTCT
*
4695084 GTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTAACTT
65 GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTAACTT
4695148 CAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
130 CAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
*
4695213 GGTAATTTCAATTTATATTTGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC
195 GGTAATTTCAATTTATATTCGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-
* *
4695278 TCACATGCTGAGGTCTTTTCAATTTCTGTTCGTAAAAAA
259 -CACACGCTGAGGTCTTTTAAATTTCTGTTC-T-AAAAA
4695317 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTT-AATTTC
* *
4695382 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGGTAATT
64 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTAACT
* *
4695447 TCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATG
129 TCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACG
** * *
4695511 CTGAGGTCTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
191 CTGAGGTAATTTCAATTTATATTCGT---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* ***
4695576 CCTCAGG-ACACGCTGAGGTATTTTTAAATTTCTGTT-T-TTCA
253 CCTC-GGCACACGCTGAGGT-CTTTTAAATTTCTGTTCTAAAAA
* * * *
4695617 AAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACCCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTAATTTCT
* *
4695682 GTTTGTCAAAAATTAACTCATATTGCGAGAG
65 GTTTTTCAAAAATCAACTCATATTGCGAGAG
4695713 TTTTACAGAG
Statistics
Matches: 357, Mismatches: 28, Indels: 21
0.88 0.07 0.05
Matches are distributed among these distances:
298 53 0.15
299 50 0.14
300 160 0.45
301 1 0.00
302 26 0.07
303 11 0.03
304 14 0.04
305 40 0.11
306 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (294 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAATTTCTG
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTAACTTC
AATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
GTAATTTCAATTTATATTCGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCA
CACGCTGAGGTCTTTTAAATTTCTGTTCTAAAAA
Found at i:4696301 original size:30 final size:30
Alignment explanation
Indices: 4696265--4696439 Score: 235
Period size: 30 Copynumber: 5.8 Consensus size: 30
4696255 ACTTTTCTCA
*
4696265 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
4696295 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* * *
4696325 ACTAGCCACTCCTTTTCTACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
4696355 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* ** *
4696385 ACTAGCCACACCTGCTCCATTACCTACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
4696415 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
4696440 CTTGTACCTA
Statistics
Matches: 128, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
29 2 0.02
30 126 0.98
ACGTcount: A:0.27, C:0.49, G:0.04, T:0.21
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:4697039 original size:25 final size:25
Alignment explanation
Indices: 4697001--4697155 Score: 91
Period size: 25 Copynumber: 6.0 Consensus size: 25
4696991 ATTTTAAATT
*
4697001 CTATATTACGTGTATATATATTTTATA
1 CTATATTA--TGTATATATATTTAATA
* *
4697028 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATATTTAATA
* * *
4697053 TTATATTATTTATATATATATTTTTTACATG
1 CTATATTA--TGTATATATA---TTTA-ATA
* * *
4697084 TTATCTTATGTATATAT-CTT-A-A
1 CTATATTATGTATATATATTTAATA
* * *
4697106 CTATATTATGTATGTATTTTTAACA
1 CTATATTATGTATATATATTTAATA
* *
4697131 CTATATTATGTACATATTTTTAATA
1 CTATATTATGTATATATATTTAATA
4697156 TTATCACGTA
Statistics
Matches: 100, Mismatches: 19, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
22 14 0.14
23 3 0.03
24 1 0.01
25 46 0.46
27 15 0.15
29 8 0.08
30 4 0.04
31 9 0.09
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (25 bp):
CTATATTATGTATATATATTTAATA
Found at i:4697043 original size:27 final size:27
Alignment explanation
Indices: 4697001--4697147 Score: 99
Period size: 27 Copynumber: 5.6 Consensus size: 27
4696991 ATTTTAAATT
* *
4697001 CTATATTACGTGTATATATATTTTATA
1 CTATATTATGTATATATATATTTTATA
* * *
4697028 CTATTTTATG--TATATATCTTTAATA
1 CTATATTATGTATATATATATTTTATA
* * *
4697053 TTATATTATTTATATATATATTTTTTA
1 CTATATTATGTATATATATATTTTATA
* * * *
4697080 C-ATGTTATCTTATGTATATATCTTA-A
1 CTATATTAT-GTATATATATATTTTATA
* * *
4697106 CTATATTATGTATGTAT-T-TTTAACA
1 CTATATTATGTATATATATATTTTATA
*
4697131 CTATATTATGTACATAT
1 CTATATTATGTATATAT
4697148 TTTTAATATT
Statistics
Matches: 94, Mismatches: 21, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
24 3 0.03
25 37 0.39
26 15 0.16
27 39 0.41
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.54
Consensus pattern (27 bp):
CTATATTATGTATATATATATTTTATA
Found at i:4697072 original size:29 final size:31
Alignment explanation
Indices: 4697023--4697100 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
4697013 TATATATATT
* *
4697023 TTATACTATTT-TATGTATATATCTTTA-ATA
1 TTATATTATTTATATATATAT-TCTTTACATA
* *
4697053 TTATATTATTTATATATATATTTTTTACATG
1 TTATATTATTTATATATATATTCTTTACATA
* *
4697084 TTATCTTATGTATATAT
1 TTATATTATTTATATAT
4697101 CTTAACTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
30 15 0.38
31 25 0.62
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (31 bp):
TTATATTATTTATATATATATTCTTTACATA
Found at i:4697337 original size:16 final size:15
Alignment explanation
Indices: 4697313--4697360 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
4697303 TAATTATTAT
*
4697313 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
4697329 TATTTTAATATTTTA
1 TATTTTAATATTTTA
4697344 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
4697360 T
1 T
4697361 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:4697348 original size:7 final size:8
Alignment explanation
Indices: 4697313--4697364 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
4697303 TAATTATTAT
*
4697313 TATTCTAA
1 TATTTTAA
*
4697321 TATTTTGA
1 TATTTTAA
4697329 TATTTTAA
1 TATTTTAA
4697337 TATTTT-A
1 TATTTTAA
4697344 TATTTTATA
1 TATTTTA-A
*
4697353 TATTTTAT
1 TATTTTAA
4697361 TATT
1 TATT
4697365 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:4698543 original size:19 final size:21
Alignment explanation
Indices: 4698519--4698559 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
4698509 TAATTATGAT
4698519 TTATAAATTTA-TT-TTAACA
1 TTATAAATTTACTTATTAACA
*
4698538 TTATAACTTTACTTATTAACA
1 TTATAAATTTACTTATTAACA
4698559 T
1 T
4698560 GTAAATTGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 10 0.53
20 2 0.11
21 7 0.37
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (21 bp):
TTATAAATTTACTTATTAACA
Found at i:4701452 original size:36 final size:38
Alignment explanation
Indices: 4701400--4701472 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 38
4701390 TAGTATCACA
*
4701400 CTCAACTTTAACAATGCTTAA-AGATATA-AAAAGTTGG
1 CTCAACTATAACAATGCTTAATA-ATATACAAAAGTTGG
4701437 CTCAACTAT-ACAATGCTTAATAATATACAAAAGTTG
1 CTCAACTATAACAATGCTTAATAATATACAAAAGTTG
4701473 TCTCGATTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
36 16 0.48
37 17 0.52
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (38 bp):
CTCAACTATAACAATGCTTAATAATATACAAAAGTTGG
Found at i:4704712 original size:48 final size:47
Alignment explanation
Indices: 4704562--4704923 Score: 286
Period size: 48 Copynumber: 7.6 Consensus size: 47
4704552 GGTAAAATAC
* * ** **
4704562 CGATGCCATGTCCCAGACATGGTCTTACACT-GACACAT-ATAACAATAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAG-CTC-TCATAA-TGTGG
* * * * * * *
4704610 CGATGCCATGTTCCAAGCATGATCTTACACTGGC-CGCATATTGAGG
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTGG
* * *
4704656 CCGATGCCATATCCCAAACATGGTCTTACATTGGCTCTCATAATGTGG
1 -CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTGG
* * * *
4704704 CAGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAAGT--
1 C-GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTC--AT-AATGTGG
*
4704753 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGG
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTGG
* * * * ****
4704800 TCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACAT-ATCAACAC
1 -CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAAT--GTGG
* *
4704849 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGG
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTGG
*
4704896 CCGATGCCATGTCCCAAATATGGTCTTA
1 -CGATGCCATGTCCCAAACATGGTCTTA
4704924 TGTTAGCACA
Statistics
Matches: 254, Mismatches: 45, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
45 4 0.02
46 2 0.01
47 37 0.15
48 201 0.79
49 4 0.02
50 2 0.01
51 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTGG
Found at i:4704780 original size:96 final size:96
Alignment explanation
Indices: 4704561--4704941 Score: 448
Period size: 96 Copynumber: 4.0 Consensus size: 96
4704551 GGGTAAAATA
* * * * * *
4704561 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACAT-ATAACAAT-ACCGATGCCATGTTCC
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC-TCATAA-TATGGCCGATGCCATGTCCC
* * * ** *
4704624 A-AGCATGATCTTACACTGGC-CGCATATTGAGG
64 AGA-CATGGTCTTACACTAGCACACATATCAAAG
* * * *
4704656 CCGATGCCATATCCCAAACATGGTCTTACATTGGCTCTCATAATGTGGCAGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCCATGTCCCAG
4704721 ACATGGTCTTACACTAGCACACATATCAAAG
66 ACATGGTCTTACACTAGCACACATATCAAAG
* * * * * *
4704752 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGTCGATGCCATGTCCTAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCCATGTCCCAG
4704817 ACATGGTCTTACACTAGCACACATATCAACA-
66 ACATGGTCTTACACTAGCACACATATCAA-AG
*
4704848 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCCATGTCCCAA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCCATGTCCCAG
* ***
4704913 ATATGGTCTTATGTTAGCACACATATCAA
66 ACATGGTCTTACACTAGCACACATATCAA
4704942 CCGAATGTCT
Statistics
Matches: 246, Mismatches: 35, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
94 2 0.01
95 65 0.26
96 178 0.72
97 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (96 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCACACATATCAAAG
Found at i:4704878 original size:144 final size:143
Alignment explanation
Indices: 4704560--4704923 Score: 373
Period size: 144 Copynumber: 2.5 Consensus size: 143
4704550 AGGGTAAAAT
*
4704560 ACCGATGCCATGTCCCAGACATGGTCTTACACTG-ACACATATAACAATA-CCGATGCCATGTTC
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGCACACATAT--CAA-AGCCGATGCCATGTCC
* * * *
4704623 CAAGCATGATCTTACACTGGCCGCATATTGAGGCCGATGCCATATCCCAAACATGGTCTTACATT
63 CAA-CATGGTCTTACACTAGCCGCATAATGAGGCCGATGCCATATCCCAAACATGGTCTTACACT
* * * ***
4704688 GGCTCTCATAATGTGGC
127 AGCACACATAATGCAAC
*
4704705 A--GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAAGTCGATGCCATGTCCCA
1 ACCGATGCCATGTCCCAGACATGGTCTTACACT-GCACACATATCAAAGCCGATGCCATGTCCCA
* * * * * *
4704768 GACATGGTCTTACACTAGCTCTCATAATGTGGTCGATGCCATGTCCTAGACATGGTCTTACACTA
65 -ACATGGTCTTACACTAGC-CGCATAATGAGGCCGATGCCATATCCCAAACATGGTCTTACACTA
4704833 GCACACAT-AT-CAAC
128 GCACACATAATGCAAC
* * * **
4704847 ACCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-ATGGCCGATGCCATGTCCC
1 ACCGATGCCATGTCCCAGACATGGTCTTACACT-GCACACAT-ATCAAAGCCGATGCCATGTCCC
*
4704911 AAATATGGTCTTA
64 -AACATGGTCTTA
4704924 TGTTAGCACA
Statistics
Matches: 184, Mismatches: 26, Indels: 19
0.80 0.11 0.08
Matches are distributed among these distances:
142 3 0.02
143 64 0.35
144 105 0.57
145 12 0.07
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (143 bp):
ACCGATGCCATGTCCCAGACATGGTCTTACACTGCACACATATCAAAGCCGATGCCATGTCCCAA
CATGGTCTTACACTAGCCGCATAATGAGGCCGATGCCATATCCCAAACATGGTCTTACACTAGCA
CACATAATGCAAC
Found at i:4710340 original size:54 final size:56
Alignment explanation
Indices: 4710281--4710388 Score: 175
Period size: 54 Copynumber: 1.9 Consensus size: 56
4710271 ATTTTCCTAT
*
4710281 AGTTTTCTGAATTTAGATTGTGTATATA-TATT-TAGAATTGGTTTTGGTATGACA
1 AGTTTTCTGAATTTAGATTGTATATATATTATTGTAGAATTGGTTTTGGTATGACA
*
4710335 AGTTTTCTGAATTTAGATTGTATATATATTTTTTGTAGAATTGGTTTTGGTATG
1 AGTTTTCTGAATTTAGATTGTATATATA-TTATTGTAGAATTGGTTTTGGTATG
4710389 GCAACTTACA
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
54 27 0.55
56 3 0.06
57 19 0.39
ACGTcount: A:0.26, C:0.03, G:0.20, T:0.51
Consensus pattern (56 bp):
AGTTTTCTGAATTTAGATTGTATATATATTATTGTAGAATTGGTTTTGGTATGACA
Found at i:4712513 original size:17 final size:18
Alignment explanation
Indices: 4712491--4712530 Score: 64
Period size: 17 Copynumber: 2.2 Consensus size: 18
4712481 GAAATATGTC
4712491 AAAAATATTTT-TTAATA
1 AAAAATATTTTATTAATA
4712508 AAAAATATTTTAATTAATA
1 AAAAATATTTT-ATTAATA
4712527 AAAA
1 AAAA
4712531 CTATAAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 11 0.52
19 10 0.48
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAAATATTTTATTAATA
Found at i:4720813 original size:29 final size:29
Alignment explanation
Indices: 4720771--4720831 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
4720761 TTGATAGTAA
4720771 GTACTGAACAAGAGTACTTAATGAGACAC
1 GTACTGAACAAGAGTACTTAATGAGACAC
*
4720800 GTACTGAACAAGAGTACTTAATGAGACCC
1 GTACTGAACAAGAGTACTTAATGAGACAC
4720829 GTA
1 GTA
4720832 ACTGTTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.21
Consensus pattern (29 bp):
GTACTGAACAAGAGTACTTAATGAGACAC
Found at i:4727703 original size:18 final size:18
Alignment explanation
Indices: 4727680--4727728 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
4727670 CAAATAAAGT
4727680 AATAAACTGAAGAATGAA
1 AATAAACTGAAGAATGAA
4727698 AATAAACTGAAGAATGAA
1 AATAAACTGAAGAATGAA
*
4727716 AATAAATTGAAGA
1 AATAAACTGAAGA
4727729 TAAAAAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.61, C:0.04, G:0.16, T:0.18
Consensus pattern (18 bp):
AATAAACTGAAGAATGAA
Found at i:4731276 original size:178 final size:178
Alignment explanation
Indices: 4730969--4731310 Score: 519
Period size: 178 Copynumber: 1.9 Consensus size: 178
4730959 TAGAAGTCTA
* *
4730969 AGAAACACACTCTCAGAGGTGATCCAACCATAGGGAATGAACCACTTCAAAGTGATAAAACCATG
1 AGAAACACACTCTCAGAGCTGATCCAACAATAGGGAATGAACCACTTCAAAGTGATAAAACCATG
* *
4731034 AGACCTATTAGAATCAAATGCAATCAATCTTTAATACAAACATCTATACAAATGAGGATTTTTTG
66 AGACCTATTAGAATCAAATGCAATCAATCTTAAATACAAACATCTATACAAATAAGGATTTTTTG
* ** *
4731099 TTTTTATTTTTCCAGCTTTGCTTTAATAATAAGCTTTATAAAAGTTAG
131 TTTTTATTTTGCCAAATTTGCTTCAATAATAAGCTTTATAAAAGTTAG
* * * *
4731147 AGAAACACACTCTCAGAGCTGATCTAATAATAGGGAATTAACCACTTCAAAGTGATAAAATCATG
1 AGAAACACACTCTCAGAGCTGATCCAACAATAGGGAATGAACCACTTCAAAGTGATAAAACCATG
4731212 AGACCTATTAGAATCAAATGCAA-CACATCTTAAATACAAACA-C-ATACAAATAAGGATTTTTT
66 AGACCTATTAGAATCAAATGCAATCA-ATCTTAAATACAAACATCTATACAAATAAGGA--TTTT
*
4731274 TTGTTTTTATTTTGCCAAATTTTCTTCAATAATAAGC
128 TTGTTTTTATTTTGCCAAATTTGCTTCAATAATAAGC
4731311 ATCACTTCCC
Statistics
Matches: 148, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
176 12 0.08
177 3 0.02
178 133 0.90
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.31
Consensus pattern (178 bp):
AGAAACACACTCTCAGAGCTGATCCAACAATAGGGAATGAACCACTTCAAAGTGATAAAACCATG
AGACCTATTAGAATCAAATGCAATCAATCTTAAATACAAACATCTATACAAATAAGGATTTTTTG
TTTTTATTTTGCCAAATTTGCTTCAATAATAAGCTTTATAAAAGTTAG
Found at i:4742556 original size:3 final size:3
Alignment explanation
Indices: 4742548--4742592 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
4742538 TTCTTACCTT
4742548 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4742593 AGAAGTCTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:4747802 original size:21 final size:21
Alignment explanation
Indices: 4747734--4747816 Score: 76
Period size: 21 Copynumber: 3.9 Consensus size: 21
4747724 TTTACTGATC
* *
4747734 AGGCACTTTATGTGTCGTATTT
1 AGGCACCTCATGTGTCGT-TTT
* * * *
4747756 CAGGCACCTCGTGTGTCATATC
1 -AGGCACCTCATGTGTCGTTTT
4747778 AGGCACCTCATGTGTCGTTTT
1 AGGCACCTCATGTGTCGTTTT
* *
4747799 AGGCACTTTATGTGTCGT
1 AGGCACCTCATGTGTCGT
4747817 ATACTGATCA
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
21 33 0.69
22 1 0.02
23 14 0.29
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (21 bp):
AGGCACCTCATGTGTCGTTTT
Found at i:4748548 original size:18 final size:16
Alignment explanation
Indices: 4748508--4748550 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
4748498 TGTCGGATGA
*
4748508 GAGAATAAATGATACT
1 GAGAAGAAATGATACT
4748524 GATGAAGAAATGCATACT
1 GA-GAAGAAATG-ATACT
4748542 GGAGAAGAA
1 -GAGAAGAA
4748551 GAATCTTACG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 2 0.09
17 8 0.35
18 11 0.48
19 2 0.09
ACGTcount: A:0.49, C:0.07, G:0.26, T:0.19
Consensus pattern (16 bp):
GAGAAGAAATGATACT
Found at i:4755085 original size:23 final size:23
Alignment explanation
Indices: 4755055--4755141 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
4755045 GCTTTACTGA
* *
4755055 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
4755078 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
4755099 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
4755121 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
4755142 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:4758986 original size:5 final size:6
Alignment explanation
Indices: 4758964--4759016 Score: 72
Period size: 6 Copynumber: 8.8 Consensus size: 6
4758954 ACTTTTTTTT
*
4758964 TTTTCC TTTTCCC TTTTCC -TTTCC TTTTCC TTTTCC TTTTCG TTTTCC
1 TTTTCC TTTT-CC TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC
*
4759012 CTTTC
1 TTTTC
4759017 GCTTCTCTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
5 5 0.12
6 31 0.74
7 6 0.14
ACGTcount: A:0.00, C:0.34, G:0.02, T:0.64
Consensus pattern (6 bp):
TTTTCC
Found at i:4758986 original size:12 final size:12
Alignment explanation
Indices: 4758964--4759015 Score: 61
Period size: 13 Copynumber: 4.2 Consensus size: 12
4758954 ACTTTTTTTT
4758964 TTTTCCTTTTCCC
1 TTTTCC-TTTCCC
4758977 TTTTCCTTT-CC
1 TTTTCCTTTCCC
*
4758988 TTTTCCTTTTCC
1 TTTTCCTTTCCC
*
4759000 TTTTCGTTTTCCC
1 TTTTC-CTTTCCC
4759013 TTT
1 TTT
4759016 CGCTTCTCTC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 11 0.31
12 10 0.29
13 14 0.40
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (12 bp):
TTTTCCTTTCCC
Found at i:4758986 original size:18 final size:19
Alignment explanation
Indices: 4758964--4759015 Score: 81
Period size: 18 Copynumber: 2.8 Consensus size: 19
4758954 ACTTTTTTTT
4758964 TTTTCCTTTTCCCTTTTCC
1 TTTTCCTTTTCCCTTTTCC
4758983 -TTTCCTTTT-CCTTTTCC
1 TTTTCCTTTTCCCTTTTCC
*
4759000 TTTTCGTTTTCCCTTT
1 TTTTCCTTTTCCCTTT
4759016 CGCTTCTCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 8 0.27
18 17 0.57
19 5 0.17
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTCCTTTTCCCTTTTCC
Found at i:4760011 original size:60 final size:60
Alignment explanation
Indices: 4759888--4760013 Score: 137
Period size: 60 Copynumber: 2.1 Consensus size: 60
4759878 AAAAATTAAC
* * * * ** * *
4759888 TTTTTAGAGTTAGGACTAATTGACAGATTTTGTAAATGTTGAGTGTTAAATTTATTGAAT
1 TTTTTAGAATTAGAACTAAATGACAAATTTTGTAAATCATGAGAGCTAAATTTATTGAAT
* * *
4759948 TTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAA-CATGAGAGCTAATTTTGTTGATT
1 TTTTTAGAATTAGAACT-AAATGACAAATTTTGTAAATCATGAGAGCTAAATTTATTGAAT
4760008 TTTTTA
1 TTTTTA
4760014 TATTTTGGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
60 37 0.69
61 17 0.31
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.44
Consensus pattern (60 bp):
TTTTTAGAATTAGAACTAAATGACAAATTTTGTAAATCATGAGAGCTAAATTTATTGAAT
Found at i:4767184 original size:14 final size:15
Alignment explanation
Indices: 4767159--4767192 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
4767149 ATTTTTTTAA
*
4767159 AATTATTAATTAATT
1 AATTATTAATTAAAT
4767174 AATTA-TAATTAAAT
1 AATTATTAATTAAAT
4767188 AATTA
1 AATTA
4767193 AAGTTCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTATTAATTAAAT
Found at i:4770245 original size:1 final size:1
Alignment explanation
Indices: 4770239--4770268 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
4770229 ACCCCTCAAA
*
4770239 CCCCCCCCCCCCCCCCCCCCCCCGCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
4770269 GTTATTCTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.97, G:0.03, T:0.00
Consensus pattern (1 bp):
C
Found at i:4771313 original size:23 final size:22
Alignment explanation
Indices: 4771290--4771347 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
4771280 TTAATCTTTA
4771290 AAAATGAAATTATTTAAATATT
1 AAAATGAAATTATTTAAATATT
* * *
4771312 AATATTAAATTATTTTATATATT
1 AAAATGAAATTA-TTTAAATATT
*
4771335 AAAATGGAATTAT
1 AAAATGAAATTAT
4771348 GTATATTATA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
22 11 0.38
23 18 0.62
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (22 bp):
AAAATGAAATTATTTAAATATT
Found at i:4779244 original size:25 final size:24
Alignment explanation
Indices: 4779164--4779244 Score: 72
Period size: 25 Copynumber: 3.1 Consensus size: 24
4779154 GACAAAAAAG
*
4779164 AAAGATTAAGTACCAAATTAGGAA
1 AAAGATTAAGTACCAAATTAGAAA
* *
4779188 AAAGAATAAAGTATCAAATTAGACCCCAAA
1 AAAG-ATTAAGTACCAAATTAG-----AAA
4779218 AAAGATTAAGTACCAAATTCAGAAA
1 AAAGATTAAGTACCAAATT-AGAAA
4779243 AA
1 AA
4779245 GTGCTAAGTT
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
24 4 0.09
25 20 0.44
29 13 0.29
30 8 0.18
ACGTcount: A:0.57, C:0.12, G:0.12, T:0.19
Consensus pattern (24 bp):
AAAGATTAAGTACCAAATTAGAAA
Found at i:4782705 original size:3 final size:3
Alignment explanation
Indices: 4782697--4782746 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
4782687 ATTACATTTT
4782697 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4782745 AT
1 AT
4782747 GTTGATATAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:4783507 original size:3 final size:3
Alignment explanation
Indices: 4783499--4783538 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
4783489 CCGCTATCGT
4783499 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
4783539 TTTTATATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:4784399 original size:29 final size:29
Alignment explanation
Indices: 4784359--4784419 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
4784349 TTTGAAAATC
*
4784359 AAAACTTAAAAATATTTAAAATACAAAAA
1 AAAACTTAAAAATATATAAAATACAAAAA
* *
4784388 AAAACCTT-AAAATATATAAAATTCAAGAA
1 AAAA-CTTAAAAATATATAAAATACAAAAA
4784417 AAA
1 AAA
4784420 TTCTATTAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 25 0.89
30 3 0.11
ACGTcount: A:0.67, C:0.08, G:0.02, T:0.23
Consensus pattern (29 bp):
AAAACTTAAAAATATATAAAATACAAAAA
Found at i:4785977 original size:37 final size:37
Alignment explanation
Indices: 4785936--4786008 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
4785926 TACTTACCAT
*
4785936 ATGTGTCCTAATAAGGATTGGTTTTCTAGTCTTAAAG
1 ATGTGTCCTAATAAAGATTGGTTTTCTAGTCTTAAAG
4785973 ATGTGTCCTAATAAAGATTGGTTTTCTAGTCTTAAA
1 ATGTGTCCTAATAAAGATTGGTTTTCTAGTCTTAAA
4786009 AAGCTAGAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (37 bp):
ATGTGTCCTAATAAAGATTGGTTTTCTAGTCTTAAAG
Found at i:4789069 original size:24 final size:22
Alignment explanation
Indices: 4789036--4789079 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
4789026 GAATTCTTAA
4789036 TTTTTAAATTCTTTTAAAATATAT
1 TTTTTAAA-T-TTTTAAAATATAT
*
4789060 TTTTTGAATTTTTAAAATAT
1 TTTTTAAATTTTTAAAATAT
4789080 GTGTTGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 1 0.05
24 7 0.37
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTTTAAATTTTTAAAATATAT
Found at i:4790583 original size:20 final size:22
Alignment explanation
Indices: 4790553--4790593 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
4790543 TATCATACTA
4790553 GTATACATATT-AATAGTTCAG
1 GTATACATATTGAATAGTTCAG
*
4790574 GTAT-CATATTGAATATTTCA
1 GTATACATATTGAATAGTTCA
4790594 AAGACCAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (22 bp):
GTATACATATTGAATAGTTCAG
Found at i:4799955 original size:11 final size:11
Alignment explanation
Indices: 4799919--4799972 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 11
4799909 TTGACCTTTC
4799919 CAAGGTATGGG
1 CAAGGTATGGG
* *
4799930 -TAGGCATGGG
1 CAAGGTATGGG
*
4799940 AAAGGTATGGG
1 CAAGGTATGGG
*
4799951 CAAGGTATAGG
1 CAAGGTATGGG
*
4799962 CAAGGAATGGG
1 CAAGGTATGGG
4799973 TATATTCTAA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
10 8 0.24
11 26 0.76
ACGTcount: A:0.31, C:0.07, G:0.44, T:0.17
Consensus pattern (11 bp):
CAAGGTATGGG
Found at i:4804045 original size:18 final size:18
Alignment explanation
Indices: 4804024--4804080 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 18
4804014 ATACATGAAC
*
4804024 AGTATTGTATACGTAAAT
1 AGTATCGTATACGTAAAT
*
4804042 AGTAACGTATACGTAAAT
1 AGTATCGTATACGTAAAT
*
4804060 AGTATCGTATACGTGAAT
1 AGTATCGTATACGTAAAT
4804078 AGT
1 AGT
4804081 GCCGTAAATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (18 bp):
AGTATCGTATACGTAAAT
Found at i:4804636 original size:10 final size:11
Alignment explanation
Indices: 4804620--4804661 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
4804610 TGACCTTTCC
4804620 AAGGTATGGG-
1 AAGGTATGGGA
*
4804630 TAGGTATGGGA
1 AAGGTATGGGA
*
4804641 AAGGTATGGGC
1 AAGGTATGGGA
*
4804652 AAGGAATGGG
1 AAGGTATGGG
4804662 TATATTCTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.31, C:0.02, G:0.48, T:0.19
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:4805445 original size:37 final size:33
Alignment explanation
Indices: 4805372--4805459 Score: 106
Period size: 33 Copynumber: 2.6 Consensus size: 33
4805362 ATTTAAAAAC
*
4805372 ATTATAAAATTTTTAAAAATGATTTTTTTTGAA
1 ATTATAAATTTTTTAAAAATGATTTTTTTTGAA
*
4805405 ATTATAAATTTTTTAAAAGTATTATTCTTTTTTTGAA
1 ATTATAAATTTTTTAAAA--ATGA-T-TTTTTTTGAA
*
4805442 ATTAT-AATTTTTAAAAAA
1 ATTATAAATTTTTTAAAAA
4805460 AATATAATTC
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
33 17 0.35
34 1 0.02
35 3 0.06
36 12 0.25
37 15 0.31
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (33 bp):
ATTATAAATTTTTTAAAAATGATTTTTTTTGAA
Found at i:4805452 original size:17 final size:17
Alignment explanation
Indices: 4805395--4805453 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
4805385 TAAAAATGAT
4805395 TTTTTTTGAAATTATAAA
1 TTTTTTTGAAATTAT-AA
** **
4805413 TTTTTTAAAAGTATTATTC
1 TTTTTTTGAA--ATTATAA
4805432 TTTTTTTGAAATTATAA
1 TTTTTTTGAAATTATAA
4805449 TTTTT
1 TTTTT
4805454 AAAAAAAATA
Statistics
Matches: 31, Mismatches: 8, Indels: 5
0.70 0.18 0.11
Matches are distributed among these distances:
17 10 0.32
18 8 0.26
19 8 0.26
20 5 0.16
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (17 bp):
TTTTTTTGAAATTATAA
Found at i:4805465 original size:18 final size:19
Alignment explanation
Indices: 4805444--4805479 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
4805434 TTTTTGAAAT
*
4805444 TATAATT-TTTAAAAAAAA
1 TATAATTCTGTAAAAAAAA
4805462 TATAATTCTGTAAAAAAA
1 TATAATTCTGTAAAAAAA
4805480 TTAAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (19 bp):
TATAATTCTGTAAAAAAAA
Found at i:4808437 original size:5 final size:5
Alignment explanation
Indices: 4808427--4808455 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
4808417 GAAAAATTTT
4808427 GATTC GATTC GATTC GATTC GATTC GATT
1 GATTC GATTC GATTC GATTC GATTC GATT
4808456 TGATAAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (5 bp):
GATTC
Found at i:4818490 original size:28 final size:28
Alignment explanation
Indices: 4818458--4818530 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 28
4818448 TTAAATTATT
4818458 AATAATAAAATTATACTTTAACCC-TAAA
1 AATAATAAAATTATA-TTTAACCCTTAAA
4818486 AATAATAAAAAATTA-ATTTAACCCTTTAAA
1 AATAAT--AAAATTATATTTAACCC-TTAAA
* *
4818516 AATTATAAAAATATA
1 AATAATAAAATTATA
4818531 AATTATTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
28 20 0.53
29 2 0.05
30 16 0.42
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.33
Consensus pattern (28 bp):
AATAATAAAATTATATTTAACCCTTAAA
Found at i:4818498 original size:30 final size:29
Alignment explanation
Indices: 4818457--4818526 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 29
4818447 TTTAAATTAT
4818457 TAATAATAAAATTATACTTTAACCC-TAAAAA
1 TAATAA-AAAATTA-A-TTTAACCCTTAAAAA
4818488 TAATAAAAAATTAATTTAACCCTTTAAAAA
1 TAATAAAAAATTAATTTAACCC-TTAAAAA
*
4818518 TTATAAAAA
1 TAATAAAAA
4818527 TATAAATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
28 8 0.22
29 1 0.03
30 21 0.58
31 6 0.17
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (29 bp):
TAATAAAAAATTAATTTAACCCTTAAAAA
Found at i:4819721 original size:273 final size:272
Alignment explanation
Indices: 4819234--4819778 Score: 765
Period size: 273 Copynumber: 2.0 Consensus size: 272
4819224 CATCGACGTT
*
4819234 GGAAAAATATACTCCAAACCATAACAATTAGATATGCTGACGTTTCCTAACTCTGGGAAGCACAA
1 GGAAAAATATACTCCAAACCATAACAAGTAGATATGCTGACGTTT-CTAACTCTGGGAAGCACAA
*
4819299 AGAATTATGAGAAGTGATGGTCGATGATATTTCTCCCTCGTCACCTTCCAATTCTGTCACTATTT
65 AGAAGTATGAGAAGTGATGGTCGATGATATTTCTCCCTCGTCACCTTCCAATTCTGTCACTATTT
* * * * ** *
4819364 GCTTCATTTCATCACAGTAGCTTACTTCAAGGCCTTTCAATTGTACTAGACTTTGAGCAAGAGAA
130 GCTTCAATTCAGCACAATAGATTACTTCAAGGCCTTTCAAGAGTACGAGACTTTGAGCAAGAGAA
* * **
4819429 AGTGAAAAGAGTGATTTCAAACGTGGGCACTTTTTTATAGTCAAAACAACTAAGCTTTCAAGTCT
195 AGTGAAAAGAGTGATTTCAAACGTCGGCACTGTAGTATAGTCAAAACAACTAAGCTTTCAAGTCT
4819494 TACATGTTGGGTC
260 TACATGTTGGGTC
* * * *
4819507 GGAAAAATATATTCCAAACCATCACAAGTAGATATG-TAGACCGTTGT-TAACTTTGGGAAGGAC
1 GGAAAAATATACTCCAAACCATAACAAGTAGATATGCT-GA-CGTT-TCTAACTCTGGGAAGCAC
* * *
4819570 AAAGAAGTATGAGAATTGATGGTCGATGATATTTCTCCCTCGTCACCTTCTATTTCTGTCACTAT
63 AAAGAAGTATGAGAAGTGATGGTCGATGATATTTCTCCCTCGTCACCTTCCAATTCTGTCACTAT
* **
4819635 TTGCTTCAATTCAGGACAATAGATTA-TCTCAA-GTTTTTCCAAGAGTACGAGACTTTGAGCAAG
128 TTGCTTCAATTCAGCACAATAGATTACT-TCAAGGCCTTT-CAAGAGTACGAGACTTTGAGCAAG
* * **
4819698 AGAATGTGAAAAGAGTGATTTCAAACGTCGGCAGTGTAGTATAGTCAATTCAACTAAGCTTTCAA
191 AGAAAGTGAAAAGAGTGATTTCAAACGTCGGCACTGTAGTATAGTCAAAACAACTAAGCTTTCAA
4819763 GTCTTACATGTTGGGT
256 GTCTTACATGTTGGGT
4819779 TGGCAATTCC
Statistics
Matches: 240, Mismatches: 27, Indels: 10
0.87 0.10 0.04
Matches are distributed among these distances:
272 6 0.03
273 229 0.95
274 4 0.02
275 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (272 bp):
GGAAAAATATACTCCAAACCATAACAAGTAGATATGCTGACGTTTCTAACTCTGGGAAGCACAAA
GAAGTATGAGAAGTGATGGTCGATGATATTTCTCCCTCGTCACCTTCCAATTCTGTCACTATTTG
CTTCAATTCAGCACAATAGATTACTTCAAGGCCTTTCAAGAGTACGAGACTTTGAGCAAGAGAAA
GTGAAAAGAGTGATTTCAAACGTCGGCACTGTAGTATAGTCAAAACAACTAAGCTTTCAAGTCTT
ACATGTTGGGTC
Found at i:4821583 original size:25 final size:26
Alignment explanation
Indices: 4821531--4821583 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
4821521 TCAAATTTAG
*
4821531 GTACCAAATTGGACAAAAAAAATTAA
1 GTACCAAATTGGACAAAAAAAATCAA
*
4821557 GTACCAAATT-TA-AAAAAAAAGTCAA
1 GTACCAAATTGGACAAAAAAAA-TCAA
4821582 GT
1 GT
4821584 TCAAGTACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 6 0.25
26 10 0.42
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.21
Consensus pattern (26 bp):
GTACCAAATTGGACAAAAAAAATCAA
Found at i:4821784 original size:15 final size:15
Alignment explanation
Indices: 4821753--4821783 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
4821743 ATCATTAAAA
4821753 TATTTTTAATATTTT
1 TATTTTTAATATTTT
4821768 TATTTATTAATATTTT
1 TATTT-TTAATATTTT
4821784 AATGGGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTTTAATATTTT
Found at i:4831728 original size:15 final size:16
Alignment explanation
Indices: 4831708--4831737 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4831698 ACATTATGTG
4831708 ACAAAAA-TAAATAAA
1 ACAAAAAGTAAATAAA
4831723 ACAAAAAGTAAATAA
1 ACAAAAAGTAAATAA
4831738 CTAAACCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.77, C:0.07, G:0.03, T:0.13
Consensus pattern (16 bp):
ACAAAAAGTAAATAAA
Found at i:4839705 original size:18 final size:18
Alignment explanation
Indices: 4839626--4839719 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
4839616 CAAGGTCACG
*
4839626 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
4839644 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
*
4839662 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTATC
4839680 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
4839698 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
4839713 ATCAATA
1 ATCAATA
4839720 AGAAAACCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:4839706 original size:9 final size:9
Alignment explanation
Indices: 4839626--4839706 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
4839616 CAAGGTCACG
*
4839626 ATCAATAGC
1 ATCAATATC
* *
4839635 GTCACTATC
1 ATCAATATC
*
4839644 ATCAATAGC
1 ATCAATATC
* * *
4839653 GTCACTAGC
1 ATCAATATC
4839662 ATCAATATC
1 ATCAATATC
* * *
4839671 GTCACTAGC
1 ATCAATATC
4839680 ATCAATATC
1 ATCAATATC
* *
4839689 GTCACTATC
1 ATCAATATC
4839698 ATCAATATC
1 ATCAATATC
4839707 GATATCATCA
Statistics
Matches: 51, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:4842115 original size:21 final size:21
Alignment explanation
Indices: 4842085--4842173 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
4842075 CTCACAAAGA
* *
4842085 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
4842105 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
4842126 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
4842147 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
4842171 AAA
1 AAA
4842174 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:4842166 original size:24 final size:21
Alignment explanation
Indices: 4842085--4842153 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
4842075 CTCACAAAGA
* * *
4842085 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
4842105 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
4842126 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
4842147 AAAAAGA
1 AAAAAGA
4842154 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:4842998 original size:43 final size:43
Alignment explanation
Indices: 4842925--4843129 Score: 261
Period size: 43 Copynumber: 4.8 Consensus size: 43
4842915 AGGTCCTGGT
*
4842925 CTTTAGCGGCGCTTTT-ATAAAAACGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTCCTAAAAACGCCGCTAAAGACCAGGAC
* * * ** *
4842967 CTTTCGCGGCGCTTTTCCCACAAACGCCGCTAAAGGTCATGAC
1 CTTTAGCGGCGCTTTTCCTAAAAACGCCGCTAAAGACCAGGAC
* *
4843010 TTTTAGCGGCGCTTTT-TTAAAAAACGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTCCT-AAAAACGCCGCTAAAGACCAGGAC
* ** *
4843053 CTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGGTCATGAC
1 CTTTAGCGGCGCTTTTCCTAAAAACGCCGCTAAAGACCAGGAC
*
4843096 TTTTAGCGGCGCTTTTCCTAAAAACGCCGCTAAA
1 CTTTAGCGGCGCTTTTCCTAAAAACGCCGCTAAA
4843130 AATATGACAT
Statistics
Matches: 137, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
42 15 0.11
43 121 0.88
44 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCTAAAAACGCCGCTAAAGACCAGGAC
Found at i:4843062 original size:86 final size:85
Alignment explanation
Indices: 4842926--4843129 Score: 354
Period size: 86 Copynumber: 2.4 Consensus size: 85
4842916 GGTCCTGGTC
*
4842926 TTTAGCGGCGCTTTTATAAAAACGCCGCTAAAGACCAGGACCTTTCGCGGCGCTTTTCCCACAAA
1 TTTAGCGGCGCTTTTATAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCACAAA
4842991 CGCCGCTAAAGGTCATGACT
66 CGCCGCTAAAGGTCATGACT
* *
4843011 TTTAGCGGCGCTTTTTTAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCTACAA
1 TTTAGCGGCGCTTTTAT-AAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCACAA
4843076 ACGCCGCTAAAGGTCATGACT
65 ACGCCGCTAAAGGTCATGACT
*
4843097 TTTAGCGGCGCTTTTCCTAAAAACGCCGCTAAA
1 TTTAGCGGCGCTTTT-ATAAAAACGCCGCTAAA
4843130 AATATGACAT
Statistics
Matches: 113, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
85 16 0.14
86 96 0.85
87 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (85 bp):
TTTAGCGGCGCTTTTATAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCACAAA
CGCCGCTAAAGGTCATGACT
Found at i:4843143 original size:129 final size:128
Alignment explanation
Indices: 4842883--4843143 Score: 314
Period size: 129 Copynumber: 2.0 Consensus size: 128
4842873 GGTCCTGGTC
* * * *
4842883 TTTAGCGGCGTTTTTTAAAAAAGCGTCGTGAAAGGTCCTGGTCTTTAGCGGCGCTTTTATAAAAA
1 TTTAGCGGCGTTTTTTAAAAAAGCGCCGTGAAAGGACCAGGCCTTTAGCGGCGCTTTTATAAAAA
* * **
4842948 CGCCGCTAAAGACCAGGACCTTTCGCGGCGCTTTTCCCACAAACGCCGCTAAAGGTCATGACT
66 CGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAAATCATGACT
*
4843011 TTTAGCGGCGCTTTTTTAAAAAA-CGCCGCT-AAA-GACCAGGACCTTTAGCGGCGCTTTTCCTA
1 TTTAGCGGCG-TTTTTTAAAAAAGCGCCG-TGAAAGGACCAGG-CCTTTAGCGGCGCTTTT-ATA
* ** * * *
4843073 CAAACGCCGCTAAAGGTCATGACTTTTAGCGGCGCTTTTCCTAAAAACGCCGCTAAAAAT-ATGA
62 AAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAAATCATGA
4843137 CAT
127 C-T
4843140 TTTA
1 TTTA
4843144 AATATTTATT
Statistics
Matches: 113, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
127 5 0.04
128 38 0.34
129 70 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (128 bp):
TTTAGCGGCGTTTTTTAAAAAAGCGCCGTGAAAGGACCAGGCCTTTAGCGGCGCTTTTATAAAAA
CGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAAATCATGACT
Found at i:4853771 original size:7 final size:7
Alignment explanation
Indices: 4853759--4853886 Score: 80
Period size: 7 Copynumber: 18.1 Consensus size: 7
4853749 ACTAATTAAT
4853759 CTAAACC
1 CTAAACC
4853766 CTAAACC
1 CTAAACC
*
4853773 TCTTAACC
1 -CTAAACC
*
4853781 CT-ATCC
1 CTAAACC
*
4853787 CATAAACA
1 C-TAAACC
*
4853795 CTAAACT
1 CTAAACC
4853802 CTAAACC
1 CTAAACC
*
4853809 CTTAACC
1 CTAAACC
*
4853816 CTTAACC
1 CTAAACC
*
4853823 CCAAATCC
1 CTAAA-CC
* *
4853831 TTACACC
1 CTAAACC
* *
4853838 TTAAACT
1 CTAAACC
4853845 CT-AACC
1 CTAAACC
*
4853851 CTAACCC
1 CTAAACC
4853858 CTAAACC
1 CTAAACC
*
4853865 CTAAATC
1 CTAAACC
* *
4853872 ATAATCC
1 CTAAACC
4853879 CTAAACC
1 CTAAACC
4853886 C
1 C
4853887 ATAATTCATC
Statistics
Matches: 92, Mismatches: 24, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
6 9 0.10
7 70 0.76
8 13 0.14
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:4853976 original size:46 final size:46
Alignment explanation
Indices: 4853914--4854002 Score: 160
Period size: 46 Copynumber: 1.9 Consensus size: 46
4853904 TTCAAATACT
* *
4853914 AGTTAACTCTTAAACCTTAGACCCTAAACCATATATCTTAAACTAG
1 AGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTAG
4853960 AGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
1 AGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
4854003 CATAAACCAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.42, C:0.25, G:0.04, T:0.29
Consensus pattern (46 bp):
AGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTAG
Found at i:4853982 original size:7 final size:7
Alignment explanation
Indices: 4853968--4854021 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
4853958 AGAGTTAACT
4853968 CATAAAC
1 CATAAAC
*
4853975 CTTAAAC
1 CATAAAC
*
4853982 CCTAAAC
1 CATAAAC
* *
4853989 CATATAT
1 CATAAAC
*
4853996 CTTAAAC
1 CATAAAC
4854003 CATAAAC
1 CATAAAC
4854010 CATAAAC
1 CATAAAC
*
4854017 TATAA
1 CATAA
4854022 TGATAATTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (7 bp):
CATAAAC
Found at i:4853999 original size:21 final size:21
Alignment explanation
Indices: 4853929--4854013 Score: 71
Period size: 21 Copynumber: 3.9 Consensus size: 21
4853919 ACTCTTAAAC
*
4853929 CTTAGACCCTAAACCATATAT
1 CTTAAACCCTAAACCATATAT
** * * *
4853950 CTTAAACTAGAGTTAACTCATAAAC
1 CTTAAAC---CCTAAAC-CATATAT
4853975 CTTAAACCCTAAACCATATAT
1 CTTAAACCCTAAACCATATAT
*
4853996 CTTAAACCATAAACCATA
1 CTTAAACCCTAAACCATA
4854014 AACTATAATG
Statistics
Matches: 48, Mismatches: 12, Indels: 8
0.71 0.18 0.12
Matches are distributed among these distances:
21 28 0.58
22 4 0.08
24 4 0.08
25 12 0.25
ACGTcount: A:0.44, C:0.26, G:0.04, T:0.27
Consensus pattern (21 bp):
CTTAAACCCTAAACCATATAT
Found at i:4854225 original size:41 final size:41
Alignment explanation
Indices: 4854178--4854345 Score: 268
Period size: 41 Copynumber: 4.1 Consensus size: 41
4854168 GTTATATGAC
**
4854178 TTTTAGCGGCGTTTTTGGTAAAA-CGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTT-CCAAAAGCGCCGCTAATGCTCTGGT
*
4854219 TTTTAGCGGCGTTTTTCCAAAAGCACCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
4854260 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
* *
4854301 TTTTAGTGGCGTTTTTCCAAAAGCGCTGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
4854341 TTTTA
1 TTTTA
4854346 CGCCGCTATT
Statistics
Matches: 120, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
40 11 0.09
41 109 0.91
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
Found at i:4854408 original size:63 final size:63
Alignment explanation
Indices: 4854283--4854409 Score: 177
Period size: 62 Copynumber: 2.0 Consensus size: 63
4854273 TTTCCAAAAG
* *
4854283 CGCCGCTAATGCTCTGGTTTTTAGTGGCGTTTTTCCAAAAGCGCTGCTAATGCTCTGTTTTTA
1 CGCCGCTAATGCTCTGGTTTTTAGTGGCGTTTTTCCAAAAGCGCCGCTAATGCTATGTTTTTA
* * *
4854346 CGCCGCTATTGCTCT-GTTTTTAGTGGCGTTTTTCGTAAAA-CGCCGCTATTGCTATGTGTTTTA
1 CGCCGCTAATGCTCTGGTTTTTAGTGGCGTTTTTC-CAAAAGCGCCGCTAATGCTATGT-TTTTA
4854409 C
1 C
4854410 AATTTTTGCG
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
62 33 0.58
63 24 0.42
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.41
Consensus pattern (63 bp):
CGCCGCTAATGCTCTGGTTTTTAGTGGCGTTTTTCCAAAAGCGCCGCTAATGCTATGTTTTTA
Found at i:4855381 original size:5 final size:5
Alignment explanation
Indices: 4855371--4855402 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
4855361 ATATATGTGA
4855371 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
4855403 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:4855396 original size:9 final size:9
Alignment explanation
Indices: 4855372--4855402 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
4855362 TATATGTGAA
4855372 AAATAAAAT
1 AAATAAAAT
4855381 AAAATAAAAT
1 -AAATAAAAT
4855391 AAATAAAAT
1 AAATAAAAT
4855400 AAA
1 AAA
4855403 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:4856510 original size:28 final size:28
Alignment explanation
Indices: 4856470--4856527 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
4856460 GCACTAGAGT
4856470 ATGGAACATGTGACATGTACTCAATCTC
1 ATGGAACATGTGACATGTACTCAATCTC
4856498 ATGGAACATGTGACATGTACTCAATCTC
1 ATGGAACATGTGACATGTACTCAATCTC
4856526 AT
1 AT
4856528 CATCTGATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (28 bp):
ATGGAACATGTGACATGTACTCAATCTC
Found at i:4859849 original size:5 final size:5
Alignment explanation
Indices: 4859839--4859871 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
4859829 CAATTTGTGA
4859839 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
4859872 AACACACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:4859864 original size:9 final size:9
Alignment explanation
Indices: 4859840--4859870 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
4859830 AATTTGTGAA
4859840 AAATAAAAT
1 AAATAAAAT
4859849 AAAATAAAAT
1 -AAATAAAAT
4859859 AAATAAAAT
1 AAATAAAAT
4859868 AAA
1 AAA
4859871 AAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:4859864 original size:14 final size:15
Alignment explanation
Indices: 4859839--4859871 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
4859829 CAATTTGTGA
4859839 AAAATAAAATAAAAT
1 AAAATAAAATAAAAT
4859854 AAAAT-AAATAAAAT
1 AAAATAAAATAAAAT
4859868 AAAA
1 AAAA
4859872 AACACACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAATAAAATAAAAT
Found at i:4860192 original size:2 final size:2
Alignment explanation
Indices: 4860185--4860220 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4860175 AATTCTAACA
4860185 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4860221 TGATCTTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4861325 original size:47 final size:47
Alignment explanation
Indices: 4861271--4861364 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
4861261 AGTTGTTGTT
*
4861271 GTGAAATTTTGGGACATTTTAAATGATATACTTCTAATCCAAAAACA
1 GTGAAATTTGGGGACATTTTAAATGATATACTTCTAATCCAAAAACA
* *
4861318 GTGAAATTTGGGGACATTTTAAATGATATATTTCTAATTCAAAAACA
1 GTGAAATTTGGGGACATTTTAAATGATATACTTCTAATCCAAAAACA
4861365 AGGTTATGAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (47 bp):
GTGAAATTTGGGGACATTTTAAATGATATACTTCTAATCCAAAAACA
Found at i:4868032 original size:35 final size:35
Alignment explanation
Indices: 4867986--4868057 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
4867976 ACAAATAGCA
*
4867986 GTCAAATATTTAACCCATTAGAATATATTTACATC
1 GTCAAATATTTAACCCATTAGAATACATTTACATC
* *
4868021 GTCAAATATTTAACCCATTGGAATACATTTACTTC
1 GTCAAATATTTAACCCATTAGAATACATTTACATC
4868056 GT
1 GT
4868058 TTATTGTGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (35 bp):
GTCAAATATTTAACCCATTAGAATACATTTACATC
Found at i:4869868 original size:36 final size:36
Alignment explanation
Indices: 4869788--4869882 Score: 120
Period size: 36 Copynumber: 2.6 Consensus size: 36
4869778 TACGACCGTT
*
4869788 TACGGTACTATTCACGTATACAGCACTATTCATATA
1 TACGGTACTATTCACGTATACAGCACTATTCATAAA
* * *
4869824 TACAGTACTATTCACGTATACGGCACTATTTA-AGAA
1 TACGGTACTATTCACGTATACAGCACTATTCATA-AA
* *
4869860 TACGGTACTGTTCAAGTATACAG
1 TACGGTACTATTCACGTATACAG
4869883 TAGTTGGGAT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
35 1 0.02
36 49 0.98
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.32
Consensus pattern (36 bp):
TACGGTACTATTCACGTATACAGCACTATTCATAAA
Found at i:4869880 original size:18 final size:18
Alignment explanation
Indices: 4869788--4869880 Score: 89
Period size: 18 Copynumber: 5.2 Consensus size: 18
4869778 TACGACCGTT
*
4869788 TACGGTACTATTCACGTA
1 TACGGTACTATTCAAGTA
* *
4869806 TACAGCACTATTCATA-TA
1 TACGGTACTATTCA-AGTA
* *
4869824 TACAGTACTATTCACGTA
1 TACGGTACTATTCAAGTA
* * *
4869842 TACGGCACTATTTAAGAA
1 TACGGTACTATTCAAGTA
*
4869860 TACGGTACTGTTCAAGTA
1 TACGGTACTATTCAAGTA
4869878 TAC
1 TAC
4869881 AGTAGTTGGG
Statistics
Matches: 59, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
18 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCAAGTA
Done.