Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 171 of 378
Found at i:49734621 original size:81 final size:80
Alignment explanation
Indices: 49734374--49734718 Score: 262
Period size: 81 Copynumber: 4.3 Consensus size: 80
49734364 ATTACCGTTT
* * * *** *
49734374 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTAC-AAAATACCCTCAATT
****
49734439 TATAAAATTACCGTTT
65 TATAAAATTACCAAAA
* ** *** **
49734455 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATCATTTTACTGTCAATT
1 TACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTA-CAAAATACCCTCAATT
* ** ***
49734520 TATAGAATTATTATTT
65 TATAAAATTACCAAAA
* *
49734536 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACAGAAATACCCTCAATT
1 TACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACA-AAATACCCTCAATT
*
49734601 TGTAAAATTACCAAAA
65 TATAAAATTACCAAAA
* * *** * *** *
49734617 TACCCTAG-TTTATAAAATTACCAAAATACCACT-GGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCTTGATTTACAAAATTACCATTTTACC-CTCGATTTACAAAATTA-CAAAATACCCTCAAT
*
49734680 TTTTAAAATTACCAAAA
64 TTATAAAATTACCAAAA
* *
49734697 TACCCCTGATTTACAAAGTTAC
1 TACCCTTGATTTACAAAATTAC
49734719 AGAAATACCC
Statistics
Matches: 218, Mismatches: 41, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
80 63 0.29
81 154 0.71
82 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (80 bp):
TACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACAAAATACCCTCAATTT
ATAAAATTACCAAAA
Found at i:49734791 original size:27 final size:27
Alignment explanation
Indices: 49734226--49734787 Score: 165
Period size: 27 Copynumber: 20.8 Consensus size: 27
49734216 TTAGTTCACT
*
49734226 AAAATTACCGAAATACCCTTAGTTTGTA-
1 AAAATTACCGAAATACCCTT-GATT-TAC
* * **
49734254 AAAA-TACTGAAATACCCTCGATTTGT
1 AAAATTACCGAAATACCCTTGATTTAC
* * **
49734280 AAAATTACTGAAATA-CCTTCGACTTGT
1 AAAATTACCGAAATACCCTT-GATTTAC
**
49734307 AAAATTACC-AAAGTACCCCCGATTTAC
1 AAAATTACCGAAA-TACCCTTGATTTAC
* * *** **
49734334 AGAATTATCGTTTTACCCCCGATTTAC
1 AAAATTACCGAAATACCCTTGATTTAC
* *** *
49734361 ATAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCGAAATACCCTTGATTTAC
*** *
49734388 AAAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCGAAATACCCTTGATTTAC
* * ** * *
49734415 AGAATTA-CTATTTTACCCTCGATTTAT
1 AAAATTACCGA-AATACCCTTGATTTAC
***
49734442 AAAATTACCGTTTTACCCTTGATTTAC
1 AAAATTACCGAAATACCCTTGATTTAC
* * *** *
49734469 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACCGAAATACCCTTGATTTAC
* ** ** ** *
49734496 AAAATTATC-ATTTTACTGTCAATTTAT
1 AAAATTACCGA-AATACCCTTGATTTAC
* ** **
49734523 AGAATTA-TTATTTTACCCTTGATTTAC
1 AAAATTACCGA-AATACCCTTGATTTAC
* * ** *
49734550 AGAATTA-CTATTTTACCCTCGATTTAC
1 AAAATTACCGA-AATACCCTTGATTTAC
* ** **
49734577 AAAATTACAGAAATACCCTCAATTTGT
1 AAAATTACCGAAATACCCTTGATTTAC
* * *
49734604 AAAATTACCAAAATACCCTAG-TTTAT
1 AAAATTACCGAAATACCCTTGATTTAC
* * **
49734630 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCGAAATACC-CTTGATTTAC
* ** **
49734657 GAAATTACCGAAATACCCTCAATTTTT
1 AAAATTACCGAAATACCCTTGATTTAC
* *
49734684 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCGAAATACCCTTGATTTAC
* *
49734711 AAAGTTACAGAAATACCCTTGACTTT-C
1 AAAATTACCGAAATACCCTTGA-TTTAC
** * *
49734738 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTACCGAAATACCCTTGATTTAC
*
49734767 AAAATTACTGAAATACCCTTG
1 AAAATTACCGAAATACCCTTG
49734788 GTTTGTAGAT
Statistics
Matches: 427, Mismatches: 89, Indels: 37
0.77 0.16 0.07
Matches are distributed among these distances:
25 1 0.00
26 37 0.09
27 356 0.83
28 14 0.03
29 19 0.04
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.35
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGATTTAC
Found at i:49734875 original size:27 final size:27
Alignment explanation
Indices: 49734844--49734933 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
49734834 TACCCCTATT
*
49734844 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
* * *
49734871 GGGTAAAGTGACCGTAAAGCCCCTGCA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
49734898 AGGTAAAATGACCGTAATA-CCCCTGTA
1 AGGTAAAATGACCGTAA-AGCCCCTGTA
*
49734925 TGGTAAAAT
1 AGGTAAAAT
49734934 AACGAATATG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (27 bp):
AGGTAAAATGACCGTAAAGCCCCTGTA
Found at i:49736194 original size:9 final size:9
Alignment explanation
Indices: 49736182--49736238 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
49736172 TTTGATAAAC
49736182 ATGATATGT
1 ATGATATGT
*
49736191 ATGATATGCAC
1 ATGATATG--T
*
49736202 ATGACATGT
1 ATGATATGT
*
49736211 ATGATATGAAC
1 ATGATATG--T
49736222 ATGATATGT
1 ATGATATGT
49736231 ATGATATG
1 ATGATATG
49736239 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:49736205 original size:20 final size:20
Alignment explanation
Indices: 49736180--49736242 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
49736170 ATTTTGATAA
49736180 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
49736200 ACATGACATGTATGATATGA
1 ACATGATATGTATGATATGC
49736220 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
49736240 ACA
1 ACA
49736243 CGAGATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:49736352 original size:24 final size:23
Alignment explanation
Indices: 49736296--49736462 Score: 219
Period size: 24 Copynumber: 7.0 Consensus size: 23
49736286 GAGGAAGTGA
*
49736296 AAAAGGGCTTATGCCCCAATTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
49736319 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
49736342 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
49736366 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
49736390 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
49736413 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
49736438 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
49736462 A
1 A
49736463 TGATAAAGCA
Statistics
Matches: 129, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
23 42 0.33
24 76 0.59
25 11 0.09
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:49736395 original size:47 final size:46
Alignment explanation
Indices: 49736297--49736462 Score: 217
Period size: 47 Copynumber: 3.5 Consensus size: 46
49736287 AGGAAGTGAA
* * *
49736297 AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT-T
*
49736344 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
*
49736391 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
*
49736438 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
49736463 TGATAAAGCA
Statistics
Matches: 107, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
47 65 0.61
48 31 0.29
49 11 0.10
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:49736412 original size:71 final size:71
Alignment explanation
Indices: 49736296--49736461 Score: 253
Period size: 71 Copynumber: 2.3 Consensus size: 71
49736286 GAGGAAGTGA
* * *
49736296 AAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
49736361 GTTATC
66 GTTATC
*
49736367 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
49736432 GTTATT
66 GTTATC
*
49736438 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
49736462 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 76 0.87
72 11 0.13
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:49736687 original size:31 final size:31
Alignment explanation
Indices: 49736652--49736715 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
49736642 CGTTTACAGT
*
49736652 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
49736683 AAAGGCTTTGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
49736714 AA
1 AA
49736716 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:49744226 original size:40 final size:40
Alignment explanation
Indices: 49744159--49744335 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
49744149 ACCCAAGTAT
*
49744159 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
49744198 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
49744238 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
49744278 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
49744318 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
49744336 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:49752193 original size:40 final size:40
Alignment explanation
Indices: 49752126--49752302 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
49752116 ACCCAAGTAT
*
49752126 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
49752165 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
49752205 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
49752245 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
49752285 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
49752303 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:49754792 original size:16 final size:15
Alignment explanation
Indices: 49754751--49754793 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
49754741 ACGATGATAA
49754751 ATATTAATATATAATT
1 ATATTAAT-TATAATT
**
49754767 ATATCCATTATAATCT
1 ATATTAATTATAAT-T
49754783 ATATTAATTAT
1 ATATTAATTAT
49754794 TATCAACTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATTAATTATAATT
Found at i:49757741 original size:38 final size:38
Alignment explanation
Indices: 49757685--49757759 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
49757675 TATGTGTATT
* * *
49757685 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
49757723 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
49757760 TCAGGCCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:49757821 original size:43 final size:43
Alignment explanation
Indices: 49757736--49757924 Score: 249
Period size: 43 Copynumber: 4.4 Consensus size: 43
49757726 GATAAATCCC
* * *
49757736 GCAGGCCTAGTGCTGGT-AT-TATATTCAGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTA
* **
49757777 GCAGGCTTAGTGCTGGTGATGTGTATTTGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTA
*
49757820 GCAGGCTTAGTGCCAGTGATGTGTATTC-GAGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCAG-GCCTTCGTGCCTA
*
49757863 GCAGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTA
* * *
49757906 GTAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
49757925 AATGATATGT
Statistics
Matches: 131, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
41 16 0.12
42 3 0.02
43 111 0.85
44 1 0.01
ACGTcount: A:0.15, C:0.22, G:0.32, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTA
Found at i:49758308 original size:45 final size:44
Alignment explanation
Indices: 49758241--49758367 Score: 145
Period size: 45 Copynumber: 2.9 Consensus size: 44
49758231 TTGACTTGAT
* * *
49758241 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAGA-AC
*
49758286 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGT--GAAC
1 TATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAGAAC
* *
49758328 TGATATCGGGCC-TCGAGCCTAACAAGCGA-AATGCCGGTGA
1 T-AT-TCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGA
49758368 TTTGAGAAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
42 12 0.17
43 18 0.25
44 7 0.10
45 34 0.48
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (44 bp):
TATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAGAAC
Found at i:49760371 original size:22 final size:22
Alignment explanation
Indices: 49760343--49760407 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
49760333 GCAAATACGT
*
49760343 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
49760365 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
49760387 TTGGCGTAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
49760408 AATAATTGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:49760625 original size:41 final size:41
Alignment explanation
Indices: 49760549--49760670 Score: 165
Period size: 41 Copynumber: 3.0 Consensus size: 41
49760539 TAAAAGCCAC
** *
49760549 CGGTGGATCCAC-GTTTTCAAGCAACCATGCAATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCAATCCTCAAT
* *
49760589 CGGTGGATCCACGGTCGTCAAGCAACCATTCTATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCAATCCTCAAT
* * *
49760630 CAGTGGATCTACGGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCAATCCTCAAT
49760671 TTCTTCCTCC
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 12 0.17
41 60 0.83
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.25
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCAATCCTCAAT
Found at i:49760970 original size:27 final size:27
Alignment explanation
Indices: 49760918--49761293 Score: 259
Period size: 27 Copynumber: 14.0 Consensus size: 27
49760908 GGTAAATCTA
* * * *
49760918 CAAACCAATGGTATTTCGGTAGTTTTG
1 CAAATCAAGGGTATTTCTGTAATTTTG
* * *
49760945 CAAACCAATGGTATTTCTATAATTTTTG
1 CAAATCAAGGGTATTTCTGTAA-TTTTG
*
49760973 -AAAGTCAAGGGTAATTCTGTAATTTTG
1 CAAA-TCAAGGGTATTTCTGTAATTTTG
* * *
49761000 TAAATTAAGGGTATTTCTGTAATTTTC
1 CAAATCAAGGGTATTTCTGTAATTTTG
*
49761027 CAAATCAAGGGTATTTCGGTAACTTTT-
1 CAAATCAAGGGTATTTCTGTAA-TTTTG
*
49761054 CAAATC-AGGGTATTT-TGGTAATTTTA
1 CAAATCAAGGGTATTTCT-GTAATTTTG
* *
49761080 CAAATCGAGGGTATTT-TGTTAATTTTA
1 CAAATCAAGGGTATTTCTG-TAATTTTG
* * * *
49761107 CAAGTCGAGGGTATTTCGGTAATTTTA
1 CAAATCAAGGGTATTTCTGTAATTTTG
* ** * * **
49761134 TAGGTCGAGAGTATTT-TAGTAATTTCA
1 CAAATCAAGGGTATTTCT-GTAATTTTG
* *
49761161 CAAATCAGGGGTATTT-TGGTAATTTTA
1 CAAATCAAGGGTATTTCT-GTAATTTTG
* *
49761188 CAAACCAGGGGTATTT-TGGTAATTTTG
1 CAAATCAAGGGTATTTCT-GTAATTTTG
* *
49761215 CTAATCGAGGGTATTT-TGGTAATTTTG
1 CAAATCAAGGGTATTTCT-GTAATTTTG
* * *
49761242 TAAACCAAGGGTA-TTCAGTAATTTTG
1 CAAATCAAGGGTATTTCTGTAATTTTG
* * *
49761268 CAAACCAAGGGTATTTCAGTAGTTTT
1 CAAATCAAGGGTATTTCTGTAATTTT
49761294 ACCCTACAGG
Statistics
Matches: 295, Mismatches: 42, Indels: 24
0.82 0.12 0.07
Matches are distributed among these distances:
25 4 0.01
26 43 0.15
27 221 0.75
28 27 0.09
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCTGTAATTTTG
Found at i:49761310 original size:27 final size:27
Alignment explanation
Indices: 49761280--49761344 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
49761270 AACCAAGGGT
* * *
49761280 ATTTCAGTAGTTTTACCCTACAGGGGC
1 ATTTCAGTAATTTTACCATAAAGGGGC
* *
49761307 ATTTCAATAATTTTACCATAAAGGGGT
1 ATTTCAGTAATTTTACCATAAAGGGGC
49761334 ATTTCAGTAAT
1 ATTTCAGTAAT
49761345 ACTAGCCTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (27 bp):
ATTTCAGTAATTTTACCATAAAGGGGC
Found at i:49768683 original size:19 final size:19
Alignment explanation
Indices: 49768659--49768697 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
49768649 AAATAAAATC
49768659 TTATTCTCAAGCATGAACA
1 TTATTCTCAAGCATGAACA
49768678 TTATTCTCAAGCATGAACA
1 TTATTCTCAAGCATGAACA
49768697 T
1 T
49768698 CTCATTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (19 bp):
TTATTCTCAAGCATGAACA
Found at i:49771229 original size:45 final size:45
Alignment explanation
Indices: 49771165--49771254 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
49771155 TAGCTAACAC
49771165 TTAGGCTATTTTCCAAGCCTTATGTTGACCTTATGTTTCCCCCAT
1 TTAGGCTATTTTCCAAGCCTTATGTTGACCTTATGTTTCCCCCAT
49771210 TTAGGCTATTTTCCAAGCCTTATGTTGACCTTATGTTTCCCCCAT
1 TTAGGCTATTTTCCAAGCCTTATGTTGACCTTATGTTTCCCCCAT
49771255 ACTTTCACAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.18, C:0.27, G:0.13, T:0.42
Consensus pattern (45 bp):
TTAGGCTATTTTCCAAGCCTTATGTTGACCTTATGTTTCCCCCAT
Found at i:49775229 original size:47 final size:44
Alignment explanation
Indices: 49775105--49775238 Score: 137
Period size: 46 Copynumber: 2.9 Consensus size: 44
49775095 TTTGGGTCAC
*
49775105 TTATGTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACA
1 TTATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-CA
* * *
49775151 TTATGAGAGCCAGTGTAATATCATGTATGGGACATGGCATCGG-CA
1 TTATGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA
*
49775196 TTGA-GACGAGTGCTAGTGTAAGACACGTCTGGGACATGCATCG
1 TT-ATGA-GA--GCTAGTGTAAGACATGTCTGGGACATGCATCG
49775239 ACTACGAGAC
Statistics
Matches: 74, Mismatches: 8, Indels: 12
0.79 0.09 0.13
Matches are distributed among these distances:
45 6 0.08
46 26 0.35
47 25 0.34
48 17 0.23
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (44 bp):
TTATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA
Found at i:49775248 original size:46 final size:48
Alignment explanation
Indices: 49775113--49775289 Score: 136
Period size: 47 Copynumber: 3.8 Consensus size: 48
49775103 ACTTATGTGA
* * * * *
49775113 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTACGA-GACGAGT
* * * * * *
49775159 GCCAGTGTAATATCATGTATGGGACATGGCATCGGC-ATTGAGACGAGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTA-CGAGACGAGT
*
49775207 GCTAGTGTAAGA-CACGTCTGGGACAT-GCATCGACTACGAGACGA-T
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGACGAGT
* *
49775252 AG-TCAGTGTAAGACCATGTTTGGGACATGGCACCGACT
1 -GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACT
49775290 TGAGATGTGA
Statistics
Matches: 106, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
45 2 0.02
46 34 0.32
47 39 0.37
48 30 0.28
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGACGAGT
Found at i:49775276 original size:47 final size:46
Alignment explanation
Indices: 49775116--49775332 Score: 133
Period size: 47 Copynumber: 4.6 Consensus size: 46
49775106 TATGTGAGCT
* * *
49775116 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATGA-G-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACTAC--GA-GACGTAGCC
* * * * *
49775162 AGTGTAATATCATGTATGGGACATGGCATCGGC-ATTGAGACG-AGTGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGACTA-CGAGACGTA--GCC
* *
49775210 AGTGTAAGACACGTCTGGGACAT-GCATCGACTACGAGACGATAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACTACGAGACG-TAGCC
* * * *
49775256 AGTGTAAGACCATGTTTGGGACATGGCACCGACT-TGAGATGTGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGACTACGAGACGT-AGCC
* * *
49775303 AGTGTAGGATCGTGTTTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACATGGCATC
49775333 AGCACCTTAC
Statistics
Matches: 137, Mismatches: 22, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
45 2 0.01
46 35 0.26
47 73 0.53
48 27 0.20
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGACTACGAGACGTAGCC
Found at i:49775276 original size:94 final size:94
Alignment explanation
Indices: 49775113--49775283 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 94
49775103 ACTTATGTGA
* * * * * *
49775113 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAATATCATGTA
1 GCTAGTGTAAGACACGTCTGGGACATGCATCGACCACATGACGAGAGCCAGTGTAAGACCATGTA
49775178 TGGGACATGGCATCGGCATTGAGACGAGT
66 TGGGACATGGCATCGGCATTGAGACGAGT
* * *
49775207 GCTAGTGTAAGACACGTCTGGGACATGCATCGACTACGA-GACGATAGTCAGTGTAAGACCATGT
1 GCTAGTGTAAGACACGTCTGGGACATGCATCGACCAC-ATGACGAGAGCCAGTGTAAGACCATGT
*
49775271 TTGGGACATGGCA
65 ATGGGACATGGCA
49775284 CCGACTTGAG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
94 65 0.98
95 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACACGTCTGGGACATGCATCGACCACATGACGAGAGCCAGTGTAAGACCATGTA
TGGGACATGGCATCGGCATTGAGACGAGT
Found at i:49778469 original size:47 final size:46
Alignment explanation
Indices: 49778393--49778665 Score: 160
Period size: 47 Copynumber: 5.8 Consensus size: 46
49778383 GGTAAGGTAC
* *
49778393 CGATGCCATGTCCCAGACACGATCCTACACTGGCTCACATCTCAAGT
1 CGAT-CCATGTCCCAGACATGATCTTACACTGGCTCACATCTCAAGT
* * *
49778440 CGATACCATGTCCCAGACATGGTCTTACACTGACT-ATCGTCTCATAG-
1 CGAT-CCATGTCCCAGACATGATCTTACACTGGCTCA-CATCTCA-AGT
* * * * * * *
49778487 CTGATGCATGTCCCAGACCT-TTCTTACACTAGCTTACATCTCGAGGC
1 C-GATCCATGTCCCAGACATGATCTTACACTGGCTCACATCTC-AAGT
* * * * *** *
49778534 CGATGCATGTCCCAAACGTG-TCTTACACTAGCAGTCGTCTCAATGT
1 CGATCCATGTCCCAGACATGATCTTACACTGGCTCACATCTCAA-GT
* * * *** *
49778580 CGATGCCATGTCCCATACATGATCTTACACTGGCTCTCATAATGTGGC
1 CGAT-CCATGTCCCAGACATGATCTTACACTGGCTCACAT-CTCAAGT
* * *
49778628 CGATGCATGTCCCAGGCATG-TCTTACACTAGCTCACAT
1 CGATCCATGTCCCAGACATGATCTTACACTGGCTCACAT
49778666 AAGTGACCCA
Statistics
Matches: 177, Mismatches: 38, Indels: 23
0.74 0.16 0.10
Matches are distributed among these distances:
45 1 0.01
46 72 0.41
47 79 0.45
48 24 0.14
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (46 bp):
CGATCCATGTCCCAGACATGATCTTACACTGGCTCACATCTCAAGT
Found at i:49778667 original size:46 final size:46
Alignment explanation
Indices: 49778489--49778667 Score: 152
Period size: 46 Copynumber: 3.8 Consensus size: 46
49778479 TCTCATAGCT
* * * * *
49778489 GATGCATGTCCCAGACCTTTCTTACACTAGCTTACAT-CTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCACATAAT-GTGGCC
* * *
49778535 GATGCATGTCCCAAACGTGTCTTACACTAGCAGTCGTC-TCAATGT---C
1 GATGCATGTCCCAGACATGTCTTACACTAGC--TC-ACAT-AATGTGGCC
* * *
49778581 GATGCCATGTCCCATACATGATCTTACACTGGCTCTCATAATGTGGCC
1 GATG-CATGTCCCAGACATG-TCTTACACTAGCTCACATAATGTGGCC
*
49778629 GATGCATGTCCCAGGCATGTCTTACACTAGCTCACATAA
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCACATAA
49778668 GTGACCCAAA
Statistics
Matches: 108, Mismatches: 14, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
45 7 0.06
46 54 0.50
47 26 0.24
48 18 0.17
49 2 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCACATAATGTGGCC
Found at i:49789185 original size:40 final size:40
Alignment explanation
Indices: 49789130--49789378 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
49789120 AACATTGGAA
49789130 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
49789170 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
49789210 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
49789250 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
49789290 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
49789329 ACCAAATCC-GGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
49789369 CTATATCCGG
1 ATATATCCGG
49789379 TTAAATCCCG
Statistics
Matches: 189, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 29 0.15
40 160 0.85
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:49797352 original size:40 final size:40
Alignment explanation
Indices: 49797297--49797546 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
49797287 AACATTGGAA
49797297 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
49797337 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
49797377 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
49797417 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
49797457 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
49797496 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
49797537 CTATATCCGG
1 ATATATCCGG
49797547 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:49804418 original size:40 final size:38
Alignment explanation
Indices: 49804258--49804441 Score: 167
Period size: 40 Copynumber: 4.8 Consensus size: 38
49804248 ACGATTTGCA
* *
49804258 CAAATGCCTTCGGGTCTTAGCCCGGATATCATT-GCA-
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
* *
49804294 CAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-G
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAATTAC-CAG
* *** *
49804332 CAGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAG
1 CA-AATGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
* * *
49804371 CACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCAG
1 CA-AA-TGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
* *
49804411 CATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 CA-AA-TGCCTTCGGGTCTTAGCCCGGATAT
49804442 CATTCAATTT
Statistics
Matches: 118, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
36 30 0.25
38 3 0.03
39 33 0.28
40 52 0.44
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.28
Consensus pattern (38 bp):
CAAATGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
Found at i:49812788 original size:40 final size:39
Alignment explanation
Indices: 49812743--49812872 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
49812733 CGGAATATAA
49812743 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
49812783 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
49812823 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
49812863 CCGGATATAA
1 CCGGATATAA
49812873 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:49812887 original size:40 final size:40
Alignment explanation
Indices: 49812759--49812910 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
49812749 ATAACCATGT
* * *
49812759 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
49812799 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
49812839 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
49812879 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
49812911 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:49812893 original size:80 final size:80
Alignment explanation
Indices: 49812759--49812908 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
49812749 ATAACCATGT
*
49812759 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
49812823 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
49812839 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
49812902 CCCGGAT
64 CCCGGAT
49812909 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:49818892 original size:68 final size:70
Alignment explanation
Indices: 49818820--49819017 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
49818810 ACACCCTGTA
* * * *
49818820 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
49818882 ATAAAT
65 ATAAAT
*
49818888 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
49818953 ATAAAT
65 ATAAAT
*
49818959 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
49819018 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:49818931 original size:41 final size:41
Alignment explanation
Indices: 49818886--49819003 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
49818876 TGAAAGATAA
49818886 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
49818927 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
49818957 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
49818998 ATGTAG
1 ATGTAG
49819004 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:49818943 original size:71 final size:71
Alignment explanation
Indices: 49818854--49819017 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
49818844 GAGATGTATC
49818854 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
49818919 AGGACA
66 AGGACA
49818925 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
49818990 AGGACA
66 AGGACA
49818996 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
49819018 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:49826460 original size:68 final size:70
Alignment explanation
Indices: 49826388--49826585 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
49826378 ACACCCTGTA
* * * *
49826388 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
49826450 ATAAAT
65 ATAAAT
*
49826456 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
49826521 ATAAAT
65 ATAAAT
*
49826527 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
49826586 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:49826499 original size:41 final size:41
Alignment explanation
Indices: 49826454--49826571 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
49826444 TGAAAGATAA
49826454 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
49826495 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
49826525 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
49826566 ATGTAG
1 ATGTAG
49826572 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:49826511 original size:71 final size:71
Alignment explanation
Indices: 49826422--49826585 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
49826412 GAGATGTATC
49826422 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
49826487 AGGACA
66 AGGACA
49826493 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
49826558 AGGACA
66 AGGACA
49826564 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
49826586 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:49835021 original size:46 final size:47
Alignment explanation
Indices: 49834968--49835329 Score: 177
Period size: 47 Copynumber: 7.7 Consensus size: 47
49834958 CATTTGTGCA
49834968 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCATATTATGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACC-TATTATGAGAG
* * * * *
49835014 CTAGTGTAAGACCATGTATAGGACATGGCATCG--GTATTGA-GACAAAAA
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTATT-ATG---AGAG
* ***
49835062 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGGGATGTA-AG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACCT-ATTATG-AGAG
* * * * *
49835108 CCAGTGTAAGA-TATGTCTGGGACAT-GCATCG-GCTATGA-GATGTG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTATTATGA-GAG
* * * *
49835152 -TCAGTGTAAGACCATATCTAGGTCATGGCATTGACACGGATATT-TGAGAG
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCGAC-C---TATTATGAGAG
** *
49835202 CTAGTGTAAGAAAATGTCTGGGACATGGCATCAACCTTAGTT-TCG-GTAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACC-TA-TTAT-GAG-AG
* * *
49835251 -TCATTGTAAAACCATGTCTGGGACATGGCATCGA-CT-TGATGGATGAG
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCGACCTATTAT-GA-GAG
* *
49835298 CCAGTGTAAGACCATGTCTGGGACATGACATC
1 CTAGTGTAAGACCATGTCTGGGACATGGCATC
49835330 AGCATTATAC
Statistics
Matches: 239, Mismatches: 47, Indels: 59
0.69 0.14 0.17
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 12 0.05
45 18 0.08
46 55 0.23
47 57 0.24
48 29 0.12
49 32 0.13
50 28 0.12
51 6 0.03
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (47 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTATTATGAGAG
Found at i:49846533 original size:43 final size:42
Alignment explanation
Indices: 49846486--49846581 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
49846476 TCCCAGACGT
* * *
49846486 GGTCTTACATGAAATCAAACATCGATGCC-ACTGTCCCTAATAG
1 GGTCTTACACGAAATCAAACA-CGATGCCGA-TGTCCCAAACAG
* * *
49846529 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAAACAT
1 GGTCTTACACGAAATCAAACACGATGCCGATGTCCCAAACAG
49846571 GGTCTTACACG
1 GGTCTTACACG
49846582 TAAAACAGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 27 0.59
43 19 0.41
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAACACGATGCCGATGTCCCAAACAG
Found at i:49846575 original size:42 final size:43
Alignment explanation
Indices: 49846476--49846590 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
49846466 AATGCCAACA
* * * *
49846476 TCCCAGACGTGGTCTTACATGAAATCAAACATCGATGCCACTG
1 TCCCAAACATGGTCTTACACGAAATCAGACATCGATGCCACTG
* * * *
49846519 TCCCTAATAGGGTCTTACACGAAATCAGATA-CGATGCCGA-TG
1 TCCCAAACATGGTCTTACACGAAATCAGACATCGATGCC-ACTG
*
49846561 TCCCAAACATGGTCTTACACGTAAAACAGA
1 TCCCAAACATGGTCTTACACG-AAATCAGA
49846591 AGTTAATGCC
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
42 27 0.47
43 31 0.53
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
TCCCAAACATGGTCTTACACGAAATCAGACATCGATGCCACTG
Found at i:49852208 original size:27 final size:27
Alignment explanation
Indices: 49852176--49852801 Score: 776
Period size: 27 Copynumber: 23.2 Consensus size: 27
49852166 AAAGTACTCC
* *
49852176 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
49852203 CTATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
49852230 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
49852257 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
49852284 C-AGTTTATAGAATTACTGTTTTACCTT
1 CGA-TTTATAGAATTACCGTTTTACCCT
*
49852311 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
49852338 CAATTTATAGAATTACCGTTTTACCTT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
49852365 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
49852392 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* **
49852419 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
*
49852446 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
49852473 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
*
49852500 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
49852527 CGATTTATAGAATTATCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
49852554 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * **
49852581 -TAGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
*
49852608 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * **
49852635 CAATTTACAGAATTACTATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
49852662 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * * *
49852689 TGATTTGTAAAATTACCGTTTTACCGT
1 CGATTTATAGAATTACCGTTTTACCCT
* * * *
49852716 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * * *
49852743 C-AGTTCACAAAATTATCGTTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
*
49852770 TGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
49852797 TGATT
1 CGATT
49852802 GTGAAATTAC
Statistics
Matches: 528, Mismatches: 61, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.01
27 518 0.98
28 5 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CGATTTATAGAATTACCGTTTTACCCT
Found at i:49852874 original size:54 final size:54
Alignment explanation
Indices: 49852806--49853001 Score: 250
Period size: 54 Copynumber: 3.6 Consensus size: 54
49852796 TTGATTGTGA
* * * *
49852806 AATTACTGAAATACCCCTGTAGGGTAGAATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
49852860 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
49852914 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCTCTGTACGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
49852968 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
49853002 ATTTTGCCCC
Statistics
Matches: 122, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 121 0.99
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:49853001 original size:27 final size:27
Alignment explanation
Indices: 49852806--49853001 Score: 223
Period size: 27 Copynumber: 7.3 Consensus size: 27
49852796 TTGATTGTGA
* *
49852806 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
49852833 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
49852860 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
49852887 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
49852914 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
49852941 AAATACCGAAATA-CCTCTGTACGGTAG
1 AATTACCGAAATACCCT-TGTAGGGTAG
* * *
49852968 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
49852995 AATTACC
1 AATTACC
49853002 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
26 3 0.02
27 140 0.96
28 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:49853238 original size:27 final size:26
Alignment explanation
Indices: 49853200--49853282 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
49853190 CGGAGGAAGC
* *
49853200 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGTCAC-AATATCT
49853227 GTTCTGGTGGCTCTGTCACAATATCT
1 GTTCTGGTGGCTCTGTCACAATATCT
* *
49853253 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGTCACAATATCT
49853280 GTT
1 GTT
49853283 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGTCACAATATCT
Found at i:49853615 original size:27 final size:27
Alignment explanation
Indices: 49853593--49853666 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
49853583 TAGGTGGGTT
*
49853593 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
49853620 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
49853647 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
49853667 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:49853793 original size:6 final size:6
Alignment explanation
Indices: 49853784--49853991 Score: 169
Period size: 6 Copynumber: 34.3 Consensus size: 6
49853774 TTGCATTCAC
* *
49853784 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
49853833 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * *
49853881 ATTCTG -TCACCTA ATTTTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
* * *
49853930 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTA ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
49853978 GTTCTA ATTCTG AT
1 ATTCTG ATTCTG AT
49853992 AATGTTTCTT
Statistics
Matches: 160, Mismatches: 26, Indels: 32
0.73 0.12 0.15
Matches are distributed among these distances:
5 11 0.07
6 136 0.85
7 10 0.06
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:49853924 original size:85 final size:85
Alignment explanation
Indices: 49853784--49853970 Score: 338
Period size: 85 Copynumber: 2.2 Consensus size: 85
49853774 TTGCATTCAC
*
49853784 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
49853849 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
* *
49853869 ATTCTGATTCTGATTCTGTCACCTAATTTTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
49853934 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
*
49853954 ATTCTAATTCTGATTCT
1 ATTCTGATTCTGATTCT
49853971 CATTTTGGTT
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 98 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:49853988 original size:30 final size:30
Alignment explanation
Indices: 49853784--49853991 Score: 252
Period size: 30 Copynumber: 7.1 Consensus size: 30
49853774 TTGCATTCAC
*
49853784 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
49853815 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
49853845 ATTCTGATTCTGATTCTG-T--T-A--CTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
49853869 ATTCTGATTCTGATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
49853900 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
* *
49853930 ATTCTGATTCTGATTCTGTTACTGATTCTA
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
49853960 ATTCTGATTCTCATTTTGGTT-CTAATTCTG
1 ATTCTGATTCTGATTCT-GTTACTAATTCTG
49853990 AT
1 AT
49853992 AATGTTTCTT
Statistics
Matches: 156, Mismatches: 11, Indels: 21
0.83 0.06 0.11
Matches are distributed among these distances:
24 21 0.13
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 82 0.53
31 47 0.30
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:49854000 original size:18 final size:17
Alignment explanation
Indices: 49853979--49854012 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
49853969 CTCATTTTGG
49853979 TTCTAATTCTGATAATGT
1 TTCTAATTCTG-TAATGT
*
49853997 TTCTTATTCTGTAATG
1 TTCTAATTCTGTAATG
49854013 GGCTAAGGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Found at i:49858379 original size:23 final size:25
Alignment explanation
Indices: 49858329--49858381 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
49858319 ATGTCATAAA
*
49858329 CATAACTTCATCATATAACTTATAC
1 CATAACTTCATCATATAACATATAC
49858354 CATAAC-TCATTCATA-AACATAT-C
1 CATAACTTCA-TCATATAACATATAC
49858377 CATAA
1 CATAA
49858382 TCAAGACAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 6 0.23
24 9 0.35
25 11 0.42
ACGTcount: A:0.43, C:0.25, G:0.00, T:0.32
Consensus pattern (25 bp):
CATAACTTCATCATATAACATATAC
Found at i:49860276 original size:50 final size:50
Alignment explanation
Indices: 49860183--49860398 Score: 193
Period size: 50 Copynumber: 4.3 Consensus size: 50
49860173 ACCAAATGAC
* * * * * * *
49860183 CTTGAATATTCGACCACATAGGTATGTACATATATGATGTTATATTGGAT
1 CTTGTATATTCGGCCATAAAGGTATGCACATATGTGATATTATATTGGAT
* * *
49860233 CTTGTATATTCGGCTATAAAGGTATGCACAAATGTGATATTATATTTGAAT
1 CTTGTATATTCGGCCATAAAGGTATGCACATATGTGATATTATA-TTGGAT
* * * *
49860284 -TTGTATATTCAGCCATATAA-GTAAGCACATATGTGATGTTATATTTGAT
1 CTTGTATATTCGGCCATA-AAGGTATGCACATATGTGATATTATATTGGAT
* * * * *** *
49860333 CTTGCATATTTGGCCACATAGGTATGGTTATATGTGATATTATATTTGAT
1 CTTGTATATTCGGCCATAAAGGTATGCACATATGTGATATTATATTGGAT
*
49860383 CTCGTATATTCGGCCA
1 CTTGTATATTCGGCCA
49860399 AATGGGTGAT
Statistics
Matches: 132, Mismatches: 30, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
49 5 0.04
50 120 0.91
51 7 0.05
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (50 bp):
CTTGTATATTCGGCCATAAAGGTATGCACATATGTGATATTATATTGGAT
Found at i:49860368 original size:100 final size:100
Alignment explanation
Indices: 49860210--49860398 Score: 245
Period size: 100 Copynumber: 1.9 Consensus size: 100
49860200 ATAGGTATGT
* * *
49860210 ACATATATGATGTTATATTGGATCTTGTATATTCGGCTATAAAGGTATGCACAAATGTGATATTA
1 ACATATATGATGTTATATTGGATCTTGCATATTCGGCCACAAAGGTATGCACAAATGTGATATTA
*
49860275 TATTTGAAT-TTGTATATTCAGCCATATAAGTAAGC
66 TATTTG-ATCTCGTATATTCAGCCATATAAGTAAGC
* * * * *** *
49860310 ACATATGTGATGTTATATTTGATCTTGCATATTTGGCCACATAGGTATGGTTATATGTGATATTA
1 ACATATATGATGTTATATTGGATCTTGCATATTCGGCCACAAAGGTATGCACAAATGTGATATTA
*
49860375 TATTTGATCTCGTATATTCGGCCA
66 TATTTGATCTCGTATATTCAGCCA
49860399 AATGGGTGAT
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
99 2 0.03
100 73 0.97
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (100 bp):
ACATATATGATGTTATATTGGATCTTGCATATTCGGCCACAAAGGTATGCACAAATGTGATATTA
TATTTGATCTCGTATATTCAGCCATATAAGTAAGC
Found at i:49862699 original size:64 final size:64
Alignment explanation
Indices: 49862599--49862742 Score: 216
Period size: 64 Copynumber: 2.2 Consensus size: 64
49862589 TGGAACCACA
* * * *
49862599 CATGCAACCTAGCTACATTTATCTCGTAGCTATCTTGTCTAGAAGGTGTACAAATAGTATCACC
1 CATGCGACCTAGCTACATATATCCCGTAGCTATCTTGTCTACAAGGTGTACAAATAGTATCACC
* * * *
49862663 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGTTGTACACATAGTATCACC
1 CATGCGACCTAGCTACATATATCCCGTAGCTATCTTGTCTACAAGGTGTACAAATAGTATCACC
49862727 CATGCGACCTAGCTAC
1 CATGCGACCTAGCTAC
49862743 CTTATAATGT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 72 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (64 bp):
CATGCGACCTAGCTACATATATCCCGTAGCTATCTTGTCTACAAGGTGTACAAATAGTATCACC
Found at i:49863308 original size:29 final size:29
Alignment explanation
Indices: 49863275--49863331 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
49863265 TCCTTAACTC
49863275 AAACTTTTGCAAAATT-ACAATTTTGCCCT
1 AAACTTTTGC-AAATTCACAATTTTGCCCT
* *
49863304 AAACTTTTGCATATTCACACTTTTGCCC
1 AAACTTTTGCAAATTCACAATTTTGCCC
49863332 CTAGGCTCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (29 bp):
AAACTTTTGCAAATTCACAATTTTGCCCT
Found at i:49865140 original size:43 final size:43
Alignment explanation
Indices: 49865093--49865180 Score: 99
Period size: 42 Copynumber: 2.0 Consensus size: 43
49865083 TCTTACATGC
49865093 AATCAAACATCGATGC-CACCGTCCCAGACAGGGTCTTACAC-TA
1 AATCAAACA-CGATGCTCA-CGTCCCAGACAGGGTCTTACACATA
* * * * *
49865136 AATCAGATACGATGCTGATGTCCCAGACATGGTCTTACACATA
1 AATCAAACACGATGCTCACGTCCCAGACAGGGTCTTACACATA
49865179 AA
1 AA
49865181 ATAGAAGTCG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
42 26 0.68
43 12 0.32
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (43 bp):
AATCAAACACGATGCTCACGTCCCAGACAGGGTCTTACACATA
Found at i:49867460 original size:6 final size:6
Alignment explanation
Indices: 49867451--49867486 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
49867441 AATTAATATT
49867451 AAAATG AAAAT- AAAATG AAAATG AAAA-G AAAATG AA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AA
49867487 GGAAAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 10 0.36
6 18 0.64
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:49867473 original size:17 final size:17
Alignment explanation
Indices: 49867451--49867486 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
49867441 AATTAATATT
*
49867451 AAAATGAAAATAAAATG
1 AAAATGAAAAGAAAATG
49867468 AAAATGAAAAGAAAATG
1 AAAATGAAAAGAAAATG
49867485 AA
1 AA
49867487 GGAAAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (17 bp):
AAAATGAAAAGAAAATG
Found at i:49867484 original size:11 final size:12
Alignment explanation
Indices: 49867451--49867486 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
49867441 AATTAATATT
49867451 AAAATGAAAAT-
1 AAAATGAAAATG
49867462 AAAATGAAAATG
1 AAAATGAAAATG
49867474 AAAA-GAAAATG
1 AAAATGAAAATG
49867485 AA
1 AA
49867487 GGAAAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (12 bp):
AAAATGAAAATG
Found at i:49869668 original size:47 final size:47
Alignment explanation
Indices: 49869614--49869743 Score: 179
Period size: 47 Copynumber: 2.8 Consensus size: 47
49869604 GTGCGAATAA
* *
49869614 TACCTTGATTTGGCTATGGGCCATGGTATAAGTATTCAAAGATGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAAGTACTCAAAGATAAGT
* * ***
49869661 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAAGTACTCAAAGATAAGT
* *
49869708 TACCTTGATTTGGTTATGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAAGTACT
49869744 TATCGATTGT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAAGTACTCAAAGATAAGT
Found at i:49870633 original size:20 final size:18
Alignment explanation
Indices: 49870593--49870629 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
49870583 CACTCCACAC
49870593 GGCCAAGCACACAGGTGT
1 GGCCAAGCACACAGGTGT
49870611 GGCCAAGCACACAGGTGT
1 GGCCAAGCACACAGGTGT
49870629 G
1 G
49870630 TGGCTTGACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.35, T:0.11
Consensus pattern (18 bp):
GGCCAAGCACACAGGTGT
Found at i:49870759 original size:21 final size:21
Alignment explanation
Indices: 49870719--49870760 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
49870709 CCCCTCTAGA
*
49870719 TTTCAAATGGCCTAATTATAC
1 TTTCAAATGCCCTAATTATAC
49870740 TTTCAAATGACCCTAA-TATAC
1 TTTCAAATG-CCCTAATTATAC
49870761 CTCATTGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (21 bp):
TTTCAAATGCCCTAATTATAC
Found at i:49873556 original size:37 final size:37
Alignment explanation
Indices: 49873506--49873579 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
49873496 CATGGAGATA
49873506 CATTCAAGAATACTTTATCTCTGACCTAGG-ACTCAAT
1 CATTCAAGAATACTTTATCTCTGACCT-GGAACTCAAT
49873543 CATTCAAGAATACTTTATCTCTGACCTGGAACTCAAT
1 CATTCAAGAATACTTTATCTCTGACCTGGAACTCAAT
49873580 TTCTTTTCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 2 0.06
37 34 0.94
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.32
Consensus pattern (37 bp):
CATTCAAGAATACTTTATCTCTGACCTGGAACTCAAT
Found at i:49877237 original size:40 final size:40
Alignment explanation
Indices: 49877164--49877356 Score: 190
Period size: 40 Copynumber: 4.8 Consensus size: 40
49877154 CAATTGAATG
* * ** *
49877164 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
49877204 ATATCCGAGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
49877244 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
49877284 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
*
49877324 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
49877357 TGTGGTTATA
Statistics
Matches: 127, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 4 0.03
40 119 0.94
41 4 0.03
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:49877302 original size:80 final size:80
Alignment explanation
Indices: 49877166--49877356 Score: 215
Period size: 80 Copynumber: 2.4 Consensus size: 80
49877156 ATTGAATGAT
* * ** * * *
49877166 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGAGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGAGCTAAGACCCGAAGG-CAT
*
49877230 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
** * *
49877246 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGAGCTAAGACCCGAAGGCATT
** *
49877311 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
49877326 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
49877357 TGTGGTTATA
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
79 2 0.02
80 90 0.96
81 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGAGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:49881135 original size:40 final size:40
Alignment explanation
Indices: 49881050--49881200 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
49881040 AATTGAATGA
* * *
49881050 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
49881090 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
49881131 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
49881170 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
49881201 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:49881214 original size:40 final size:40
Alignment explanation
Indices: 49881087--49881216 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
49881077 ATGCTGGAAA
* * * *
49881087 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
49881127 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
49881167 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
49881207 TTATATCCGG
1 TTATATCCGG
49881217 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:49888199 original size:40 final size:40
Alignment explanation
Indices: 49888154--49888264 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 40
49888144 CTGGAAATTT
* * *
49888154 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
49888195 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
49888234 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
49888265 ACATGGTTGT
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
38 3 0.05
39 5 0.08
40 51 0.84
41 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:49888278 original size:40 final size:40
Alignment explanation
Indices: 49888154--49888280 Score: 123
Period size: 40 Copynumber: 3.2 Consensus size: 40
49888144 CTGGAAATTT
* * * * *
49888154 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
49888194 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
*
49888234 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTG
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
49888274 TATCCGG
1 TATCCGG
49888281 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:49895656 original size:49 final size:49
Alignment explanation
Indices: 49895448--49895670 Score: 189
Period size: 49 Copynumber: 4.5 Consensus size: 49
49895438 TGAGGTCACG
* * * *
49895448 TGTGTAGTACTAAGAGCAGGTTACTACATGTAGCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAATTGGTCGCA
* * *** * * * * *
49895497 TGTGTACTTCTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAA-TT-GGTCGCA
* ** * *
49895548 TGTGTAGTACTAAATGCAGGCTACTACATG--TCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAATT-GGTCGCA
* * * *
49895596 CGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAATTGGTCGCA
*
49895645 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
49895671 TGCATACCAG
Statistics
Matches: 133, Mismatches: 37, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
48 34 0.26
49 61 0.46
50 10 0.08
51 28 0.21
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAATTGGTCGCA
Found at i:49908738 original size:43 final size:43
Alignment explanation
Indices: 49908661--49908742 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
49908651 GCTCGTACTA
* **
49908661 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAAGCGTAATGCCGGTGATGTG
*
49908704 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAAGCGTAATGCCGGTGA
49908743 AATGATATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.13, C:0.26, G:0.33, T:0.28
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAAGCGTAATGCCGGTGATGTG
Found at i:49913157 original size:30 final size:31
Alignment explanation
Indices: 49913117--49913179 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
49913107 CCTTTTCATA
*
49913117 TTTCATATTTCATAACACTGGG-CGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
49913147 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
49913178 TT
1 TT
49913180 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 19 0.66
31 10 0.34
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:49913422 original size:24 final size:24
Alignment explanation
Indices: 49913371--49913560 Score: 287
Period size: 24 Copynumber: 8.0 Consensus size: 24
49913361 GCTTTATCAT
*
49913371 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
49913396 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
49913420 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
49913443 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
49913467 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
49913491 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
49913515 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
49913538 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
49913561 TCACTTCCTC
Statistics
Matches: 155, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
23 44 0.28
24 99 0.64
25 12 0.08
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:49913446 original size:47 final size:47
Alignment explanation
Indices: 49913392--49913560 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
49913382 CCTAGCCTCT
* *
49913392 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
49913439 TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
49913486 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
49913534 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
49913561 TCACTTCCTC
Statistics
Matches: 115, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 70 0.61
48 45 0.39
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:49913471 original size:71 final size:72
Alignment explanation
Indices: 49913371--49913560 Score: 287
Period size: 71 Copynumber: 2.7 Consensus size: 72
49913361 GCTTTATCAT
* *
49913371 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAA
49913435 GCCC-TTTA
64 GCCCTTTTA
* * *
49913443 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
*
49913508 CCTTTTG
66 CCTTTTA
49913515 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
49913561 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
71 76 0.70
72 33 0.30
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTTA
Found at i:49913637 original size:20 final size:20
Alignment explanation
Indices: 49913614--49913676 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
49913604 GAACATCTCG
*
49913614 TGTGCATATCATACATATCA
1 TGTGCATATCATACATGTCA
49913634 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATGTCA
49913654 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATGTCA
49913674 TGT
1 TGT
49913677 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATGTCA
Found at i:49915295 original size:27 final size:27
Alignment explanation
Indices: 49914968--49915284 Score: 408
Period size: 27 Copynumber: 11.8 Consensus size: 27
49914958 GGGTATTTTA
* * *
49914968 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
49914995 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
49915022 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
49915049 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
49915076 GTAATTCTGTAAATC-AGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
49915102 ATAATTATGTAAATCG-GGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
49915128 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
**
49915155 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
49915182 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
*
49915209 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
49915236 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
49915263 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
49915285 CTTTGGTAAT
Statistics
Matches: 261, Mismatches: 23, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
26 48 0.18
27 211 0.81
28 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:49915306 original size:27 final size:27
Alignment explanation
Indices: 49915235--49915485 Score: 213
Period size: 27 Copynumber: 9.3 Consensus size: 27
49915225 AGGGTAAAAC
* ****
49915235 GGTAATTTTATAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
49915262 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
49915289 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
49915316 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
49915343 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
49915370 GGTAATTTTACAAA-CTAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
49915396 GATAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * *
49915423 GGTAATTTTATAAACCAATGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
49915451 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
49915477 GGTAATTTT
1 GGTAATTTT
49915486 GTAAACCAAA
Statistics
Matches: 190, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
26 43 0.23
27 123 0.65
28 24 0.13
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:49915499 original size:26 final size:26
Alignment explanation
Indices: 49915362--49915502 Score: 138
Period size: 26 Copynumber: 5.3 Consensus size: 26
49915352 ACAAATTAGG
* * *
49915362 GGTATTTTGGTAATTTTACAAACTAG
1 GGTATTTTGGTAATTTTATAAACCAA
* * * *
49915388 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
49915415 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
* * * *
49915441 TGGGTATTTTAGTAATTTTACAAAGCAG
1 --GGTATTTTGGTAATTTTATAAACCAA
*
49915469 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
*
49915495 AGTATTTT
1 GGTATTTT
49915503 AAATAGGGAT
Statistics
Matches: 97, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 52 0.54
27 23 0.24
28 22 0.23
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTATAAACCAA
Found at i:49918881 original size:40 final size:40
Alignment explanation
Indices: 49918822--49919027 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
49918812 CAATTGAATG
* * * *
49918822 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * *
49918862 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGA--
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
** * **
49918900 CCATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
49918940 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
49918980 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
49919020 ATATCCGG
1 ATATCCGG
49919028 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
37 2 0.01
38 28 0.20
40 106 0.77
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:49918958 original size:78 final size:80
Alignment explanation
Indices: 49918824--49919027 Score: 243
Period size: 78 Copynumber: 2.6 Consensus size: 80
49918814 ATTGAATGAT
* * ** * * *
49918824 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
49918888 TTGTGCTAGT-G-ACC
65 TTGTGCAAGTCGTACC
* * *
49918902 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
* *
49918967 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGTACC
* *
49918982 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
49919028 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
77 2 0.02
78 60 0.56
79 1 0.01
80 44 0.41
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGTACC
Found at i:49923195 original size:39 final size:40
Alignment explanation
Indices: 49923054--49923275 Score: 292
Period size: 40 Copynumber: 5.5 Consensus size: 40
49923044 TATTCGGATG
* *
49923054 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
49923094 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
*
49923137 ATA-CCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
49923176 ATATCCGGGCTAAGT-CCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
49923215 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
49923255 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
49923276 ATACTTGGGT
Statistics
Matches: 162, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 57 0.35
40 66 0.41
41 2 0.01
42 27 0.17
43 7 0.04
44 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:49933572 original size:39 final size:39
Alignment explanation
Indices: 49933524--49933600 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
49933514 GCCCGAATAT
49933524 ATTTCCAGCACGTAGCCTACGGACCTCAAGTCCAGATAA
1 ATTTCCAGCACGTAGCCTACGGACCTCAAGTCCAGATAA
* *
49933563 ATTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGGATA
1 ATTTCCAGCACGTAGCCTACGGACCTCAAGTCCAGATA
49933601 TGTTTCTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (39 bp):
ATTTCCAGCACGTAGCCTACGGACCTCAAGTCCAGATAA
Found at i:49936317 original size:40 final size:40
Alignment explanation
Indices: 49936259--49936435 Score: 203
Period size: 40 Copynumber: 4.5 Consensus size: 40
49936249 AACCGAGCTT
* * * * *
49936259 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * * ** * *
49936298 CTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * *
49936338 CTTTGGGTCTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
*
49936378 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
49936418 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
49936436 GTATCATTCA
Statistics
Matches: 115, Mismatches: 22, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
39 9 0.08
40 106 0.92
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:49941830 original size:44 final size:43
Alignment explanation
Indices: 49941782--49941886 Score: 115
Period size: 42 Copynumber: 2.4 Consensus size: 43
49941772 ATCTATAACG
49941782 TTGGCATCGACT-TATGATTTACGTGTAAAACCATGTCTGAGACA
1 TTGGCATCGA-TATATGATTT-CGTGTAAAACCATGTCTGAGACA
* * * *
49941826 TTGGCATC-ATATTTGATTTCGTGTAAGACCCTGTCTGGGACA
1 TTGGCATCGATATATGATTTCGTGTAAAACCATGTCTGAGACA
** *
49941868 GAGGCATCGATATTTGATT
1 TTGGCATCGATATATGATT
49941887 ACATATAAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
42 27 0.51
43 18 0.34
44 8 0.15
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (43 bp):
TTGGCATCGATATATGATTTCGTGTAAAACCATGTCTGAGACA
Found at i:49941861 original size:42 final size:44
Alignment explanation
Indices: 49941796--49941886 Score: 123
Period size: 42 Copynumber: 2.1 Consensus size: 44
49941786 CATCGACTTA
**
49941796 TGATTTACGTGTAAAACCATGTCTGAGACATTGGCATC-ATATT
1 TGATTTACGTGTAAAACCATGTCTGAGACAGAGGCATCGATATT
* * *
49941839 TGATTT-CGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATT
1 TGATTTACGTGTAAAACCATGTCTGAGACAGAGGCATCGATATT
49941882 TGATT
1 TGATT
49941887 ACATATAAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 26 0.62
43 16 0.38
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.34
Consensus pattern (44 bp):
TGATTTACGTGTAAAACCATGTCTGAGACAGAGGCATCGATATT
Found at i:49941917 original size:43 final size:42
Alignment explanation
Indices: 49941823--49941917 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 42
49941813 CATGTCTGAG
* * * * *
49941823 ACATTGGCATCATATTTGATTTCGTGTAAGACCCTGTCTGGG
1 ACATTGGCATCATATTTGATTACATATAAGACCCTGCCTGGA
**
49941865 ACAGAGGCATCGATATTTGATTACATATAAGACCAC-GCCTGGA
1 ACATTGGCATC-ATATTTGATTACATATAAGACC-CTGCCTGGA
49941908 ACATTGGCAT
1 ACATTGGCAT
49941918 TGTACAATCT
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
42 9 0.21
43 32 0.76
44 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (42 bp):
ACATTGGCATCATATTTGATTACATATAAGACCCTGCCTGGA
Found at i:49942212 original size:8 final size:8
Alignment explanation
Indices: 49942199--49942223 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
49942189 AATTTTGATG
49942199 ATGTTTAT
1 ATGTTTAT
49942207 ATGTTTAT
1 ATGTTTAT
49942215 ATGTTTAT
1 ATGTTTAT
49942223 A
1 A
49942224 AAGTTAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (8 bp):
ATGTTTAT
Found at i:49943468 original size:43 final size:42
Alignment explanation
Indices: 49943407--49943491 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 42
49943397 TTTGGTTGGT
** *
49943407 ATCAGAGCTACGGTTTAGTCGATTCT-AGAACTAACGTAGCATA
1 ATCAGAGCTACAATTTAGTCAATT-TAAG-ACTAACGTAGCATA
*
49943450 ATCAGAGCTACAATTTAGTCAATTTAAGACTAATGTAGCATA
1 ATCAGAGCTACAATTTAGTCAATTTAAGACTAACGTAGCATA
49943492 TGTGAGTCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 14 0.38
43 23 0.62
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.29
Consensus pattern (42 bp):
ATCAGAGCTACAATTTAGTCAATTTAAGACTAACGTAGCATA
Found at i:49950316 original size:17 final size:17
Alignment explanation
Indices: 49950294--49950330 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
49950284 ACAATCAGAG
49950294 TAAACCCAATATAGGCC
1 TAAACCCAATATAGGCC
*
49950311 TAAACCCAATATGGGCC
1 TAAACCCAATATAGGCC
49950328 TAA
1 TAA
49950331 GCCCTTTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.41, C:0.27, G:0.14, T:0.19
Consensus pattern (17 bp):
TAAACCCAATATAGGCC
Found at i:49956114 original size:70 final size:71
Alignment explanation
Indices: 49955963--49956125 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
49955953 GAGATGTATC
49955963 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
49956028 AGGACA
66 AGGACA
49956034 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
49956098 CGGACA
66 AGGACA
49956104 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
49956126 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:49963648 original size:70 final size:71
Alignment explanation
Indices: 49963497--49963659 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
49963487 GAGATGTATC
49963497 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
49963562 AGGACA
66 AGGACA
49963568 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
49963632 CGGACA
66 AGGACA
49963638 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
49963660 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:49981540 original size:15 final size:15
Alignment explanation
Indices: 49981520--49981575 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
49981510 ATATCTTGGG
49981520 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
49981535 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
49981550 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
49981565 TTTCTTTATTC
1 TTTCTTTATTC
49981576 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:49986354 original size:46 final size:46
Alignment explanation
Indices: 49986303--49986574 Score: 512
Period size: 46 Copynumber: 6.0 Consensus size: 46
49986293 AGTTAAATAT
49986303 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
49986349 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
49986395 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
49986441 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
49986487 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTA--TG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
49986531 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
49986575 AGATGTATAT
Statistics
Matches: 222, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
44 42 0.19
46 180 0.81
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:49986612 original size:138 final size:137
Alignment explanation
Indices: 49986303--49986612 Score: 471
Period size: 138 Copynumber: 2.2 Consensus size: 137
49986293 AGTTAAATAT
* * *
49986303 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTGATATATGTGTGGTAAAGCC
1 ATATATATGTGATAAAGCCAAATGGCGAGTGTGAAATATGTATGTGATATATGTGTGGTAAAGCC
* *
49986368 AAATGGCTAGTGTGAAATATGTATGTGATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATA
66 AAATGGCTAGTGTGAAATATGTA-GTGATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACA
*
49986433 TGTATGTG
130 TGTATGAG
* * *
49986441 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTGATATATGTGTGGTAAAGCC
1 ATATATATGTGATAAAGCCAAATGGCGAGTGTGAAATATGTATGTGATATATGTGTGGTAAAGCC
49986506 AAATGGCTAGTGTGAAATATGTA-TGATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACAT
66 AAATGGCTAGTGTGAAATATGTAGTGATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACAT
49986570 GTATGAG
131 GTATGAG
* *
49986577 ATGTATATATGTGATAAGGCCGAATGGCCGA-TGTGA
1 A--TATATATGTGATAAAGCCAAATGG-CGAGTGTGA
49986613 TGAATGTCAA
Statistics
Matches: 161, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
136 46 0.29
138 113 0.70
139 2 0.01
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.31
Consensus pattern (137 bp):
ATATATATGTGATAAAGCCAAATGGCGAGTGTGAAATATGTATGTGATATATGTGTGGTAAAGCC
AAATGGCTAGTGTGAAATATGTAGTGATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACAT
GTATGAG
Found at i:49986638 original size:47 final size:47
Alignment explanation
Indices: 49986578--49986688 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
49986568 ATGTATGAGA
* * * *
49986578 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
49986625 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
49986672 TGTATA-AATGTGATAAG
1 TGTATATAA-GTGATAAG
49986689 TCCCGAGGGG
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:49989302 original size:40 final size:40
Alignment explanation
Indices: 49989247--49989510 Score: 429
Period size: 40 Copynumber: 6.6 Consensus size: 40
49989237 CTCGACGATG
*
49989247 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
*
49989287 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
49989327 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* **
49989367 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGACGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
49989407 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
49989447 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
49989487 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTTCCGAAGAGCA
49989511 ATCATGCTGG
Statistics
Matches: 214, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:49990238 original size:40 final size:40
Alignment explanation
Indices: 49990174--49990274 Score: 107
Period size: 40 Copynumber: 2.5 Consensus size: 40
49990164 AATGGTATCT
* ** * *
49990174 GGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTACTA-AATCC
1 GGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA-CC
*
49990214 GGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAACC
1 GGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACC
*
49990254 GGGCT-ATGTCCCGAAGACAAT
1 GGGCTAAT-TCCCGAAGGCAAT
49990275 CGAGTGAGTC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 2 0.04
40 48 0.92
41 2 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
GGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACC
Found at i:49990290 original size:40 final size:40
Alignment explanation
Indices: 49990212--49990308 Score: 99
Period size: 40 Copynumber: 2.5 Consensus size: 40
49990202 GTTACTAAAT
* * *
49990212 CCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGTGAATCACTATAA
* * *
49990252 CCGGGCT-ATGTCCCGAAGACAATCGAGTGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGTGAATCACTATAA
* *
49990292 CC-GGTTAAATCCCGAAG
1 CCGGGCTAATTCCCGAAG
49990309 GTACGTGATT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
39 13 0.28
40 34 0.72
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGTGAATCACTATAA
Found at i:49993026 original size:46 final size:46
Alignment explanation
Indices: 49992975--49993246 Score: 503
Period size: 46 Copynumber: 6.0 Consensus size: 46
49992965 AGTTAAATAT
49992975 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
49993021 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
49993067 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
49993113 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
49993159 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTG--ATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
49993203 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
49993247 AGATGTATAT
Statistics
Matches: 221, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
44 42 0.19
46 179 0.81
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:49993284 original size:138 final size:137
Alignment explanation
Indices: 49992975--49993284 Score: 462
Period size: 138 Copynumber: 2.2 Consensus size: 137
49992965 AGTTAAATAT
* * *
49992975 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTGATATATGTGTGGTAAAGCC
1 ATATATATGTGATAAAGCCAAATGGCGAGTGTGAAATATGTATGTGATATATGTGTGGTAAAGCC
* * *
49993040 AAATGGCTAGTGTGAAATATGTATGTGATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATA
66 AAATGGCTAGTGTG-AATATGTATGAGATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACA
*
49993105 TGTATGTG
130 TGTATGAG
* * *
49993113 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTGATATATGTGTGGTAAAGCC
1 ATATATATGTGATAAAGCCAAATGGCGAGTGTGAAATATGTATGTGATATATGTGTGGTAAAGCC
49993178 AAATGGCTAGTGTG-ATATGTATGAGATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACAT
66 AAATGGCTAGTGTGAATATGTATGAGATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACAT
49993242 GTATGAG
131 GTATGAG
* *
49993249 ATGTATATATGTGATAAGGCCGAATGGCCGA-TGTGA
1 A--TATATATGTGATAAAGCCAAATGG-CGAGTGTGA
49993285 TGAATGTCAA
Statistics
Matches: 160, Mismatches: 9, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
136 54 0.34
138 104 0.65
139 2 0.01
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.31
Consensus pattern (137 bp):
ATATATATGTGATAAAGCCAAATGGCGAGTGTGAAATATGTATGTGATATATGTGTGGTAAAGCC
AAATGGCTAGTGTGAATATGTATGAGATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACAT
GTATGAG
Found at i:49993310 original size:47 final size:47
Alignment explanation
Indices: 49993250--49993360 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
49993240 ATGTATGAGA
* * * *
49993250 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
49993297 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
49993344 TGTATA-AATGTGATAAG
1 TGTATATAA-GTGATAAG
49993361 TCCCGAGGGG
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:50001156 original size:17 final size:18
Alignment explanation
Indices: 50001134--50001167 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50001124 CACATTGAAG
50001134 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
50001151 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
50001168 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:50004840 original size:29 final size:29
Alignment explanation
Indices: 50004780--50004868 Score: 153
Period size: 29 Copynumber: 3.1 Consensus size: 29
50004770 CATACATGCA
* *
50004780 TATGGCCCATTAGGCCC-AATCTCATTCA
1 TATGGCCCATTAGGCCCAAATCACATTCG
50004808 TATGGCCCATTAGGCCCAAATCACATTCG
1 TATGGCCCATTAGGCCCAAATCACATTCG
50004837 TATGGCCCATTAGGCCCAAATCACATTCG
1 TATGGCCCATTAGGCCCAAATCACATTCG
50004866 TAT
1 TAT
50004869 ACATGCTTTC
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
28 17 0.29
29 41 0.71
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATTCG
Found at i:50016715 original size:46 final size:47
Alignment explanation
Indices: 50016662--50017014 Score: 164
Period size: 46 Copynumber: 7.5 Consensus size: 47
50016652 TGTGCACTAT
*
50016662 TGTAAGA-CATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGCATTGGCCACATTATGAGAGCTAG
* * *
50016708 TGTAAGACCATGTCTAGGACATGGCA-T--CGACATTGAGACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACAT-GCATTGGCCACATT---ATGAGAGCTAG
* * ** * *
50016756 TGTAAGACACA--TCTGGGACATGAATCGGCCTTGA-GATGTA-AGCCAG
1 TGTAAGAC-CATGTCTGGGACATGCATTGGCC-ACATTATG-AGAGCTAG
* * * *
50016802 TGTAAGA-CATGTCTGGGACATGCATTGG-C-TATGA-GATGTGTTAG
1 TGTAAGACCATGTCTGGGACATGCATTGGCCACATTATGA-GAGCTAG
* * * * *
50016846 TGTAAGATCATGTCTAGGACATGGCATCGGCACAGATATGTGAGAGCTAG
1 TGTAAGACCATGTCTGGGACAT-GCATTGGC-CACAT-TATGAGAGCTAG
* * * * *
50016896 TGTAAGACCATGTCTGGGACATCGC-GTGAGCCTCAATTTTGATAGTTAG
1 TGTAAGACCATGTCTGGGACAT-GCATTG-GCCAC-ATTATGAGAGCTAG
* * * * *
50016945 TGTAGGACAATGTTTGGGACATGGCA-T--CAAC-TTGATGGATGAGCCAG
1 TGTAAGACCATGTCTGGGACAT-GCATTGGCCACATT-AT-GA-GAGCTAG
50016992 TGTAAGACCATGTCTGGGACATG
1 TGTAAGACCATGTCTGGGACATG
50017015 GCATCAGCAT
Statistics
Matches: 229, Mismatches: 49, Indels: 58
0.68 0.15 0.17
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 16 0.07
45 21 0.09
46 49 0.21
47 47 0.21
48 21 0.09
49 38 0.17
50 32 0.14
51 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGCATTGGCCACATTATGAGAGCTAG
Found at i:50019223 original size:40 final size:39
Alignment explanation
Indices: 50019178--50019307 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
50019168 CGGAATATAA
50019178 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
50019218 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
50019258 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
50019298 CCGGATATAA
1 CCGGATATAA
50019308 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:50019322 original size:40 final size:40
Alignment explanation
Indices: 50019194--50019345 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
50019184 ATAACCATGT
* * *
50019194 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
50019234 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
50019274 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
50019314 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
50019346 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:50019328 original size:80 final size:80
Alignment explanation
Indices: 50019194--50019343 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
50019184 ATAACCATGT
*
50019194 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
50019258 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
50019274 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
50019337 CCCGGAT
64 CCCGGAT
50019344 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:50021254 original size:40 final size:40
Alignment explanation
Indices: 50021209--50021376 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
50021199 CGGAATATAA
50021209 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
50021249 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
50021289 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
50021329 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
50021369 CCGGATAT
1 CCGGATAT
50021377 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50025653 original size:40 final size:40
Alignment explanation
Indices: 50025562--50025785 Score: 237
Period size: 40 Copynumber: 5.7 Consensus size: 40
50025552 TGAATGATAC
* * * *
50025562 CCGGGCTAAGTCCCGAAGGCATTTTATGCTAGTGAT-TATAT
1 CCGGGCTAAGACCCGAAGGCA-TTTGTGCAAGTTATATA-AT
* *
50025603 CCGGGCTAAGACCCGAAGGCATTCGTGC-AGTTGGTATAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTT-ATATAAT
* *
50025643 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACAAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATATAAT
* * * * *
50025683 CCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTGTTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATATAAT
*
50025722 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-T-TACAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATATAAT
*
50025760 CCGGG-TAAGA-CCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
50025786 TGTGGTTATA
Statistics
Matches: 157, Mismatches: 22, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
36 15 0.10
37 5 0.03
38 8 0.05
39 36 0.23
40 67 0.43
41 26 0.17
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATATAAT
Found at i:50025726 original size:79 final size:78
Alignment explanation
Indices: 50025562--50025778 Score: 296
Period size: 79 Copynumber: 2.8 Consensus size: 78
50025552 TGAATGATAC
* * * * * *
50025562 CCGGGCTAAGTCCCGAAGGCATTTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCA-TTTGTGCAAGTTA-CAAATCCGGGCTAAGA-CCGAAGGCATTC
50025627 GTGCAGTTGGTATAAT
63 GTGCAGTTGGTATAAT
50025643 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACAAAATCCGGGCTAAGACCGAAGGCATTCGT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTAC-AAATCCGGGCTAAGACCGAAGGCATTCGT
* *
50025708 GCGAGTT-GTTTTAT
65 GC-AGTTGGTATAAT
50025722 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTAC-AATCCGGG-TAAGACCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACAAATCCGGGCTAAGACCGAAGGCA
50025779 ATTGTGCTGT
Statistics
Matches: 126, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
76 14 0.11
77 8 0.06
79 56 0.44
80 28 0.22
81 20 0.16
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (78 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACAAATCCGGGCTAAGACCGAAGGCATTCGTG
CAGTTGGTATAAT
Found at i:50035512 original size:40 final size:40
Alignment explanation
Indices: 50035375--50035557 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
50035365 GCTACTCGTT
*
50035375 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
50035415 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
50035455 TAAATGCCTTC-GAATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
50035495 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
50035536 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
50035558 AAACATCATT
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.02
40 111 0.89
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:50038474 original size:40 final size:39
Alignment explanation
Indices: 50038412--50038635 Score: 181
Period size: 40 Copynumber: 5.6 Consensus size: 39
50038402 CGGATGATAA
* *
50038412 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATT
* * *
50038452 TCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAAT-T
*
50038492 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--AT-T
* * * ** * *
50038532 CCGAGCTATGTCCTGAAGGCATTTGTGCGAGTTTTTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATT
* *
50038571 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT--TACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--AT-T
50038611 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50038636 AGCTAGTGGC
Statistics
Matches: 151, Mismatches: 22, Indels: 22
0.77 0.11 0.11
Matches are distributed among these distances:
37 3 0.02
39 32 0.21
40 112 0.74
41 3 0.02
42 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATT
Found at i:50038657 original size:79 final size:79
Alignment explanation
Indices: 50038453--50038658 Score: 236
Period size: 79 Copynumber: 2.6 Consensus size: 79
50038443 TGGCTAATTT
* *
50038453 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
* ** *
50038518 GCGAGCTATTATATC
65 GCAAGCTACCATAAC
* * * * *
50038533 CGAGCTATGTCCTGAAGGCATTTGTGCGAGT-TTTTATACCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT-CCGGGCTAAGTCCCGAAGGCATTTGT
*
50038597 GCAAGTTACCATAAC
65 GCAAGCTACCATAAC
* * *
50038612 CGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
50038659 ACCCCAAACG
Statistics
Matches: 104, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
78 4 0.04
79 68 0.65
80 28 0.27
81 4 0.04
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CAAGCTACCATAAC
Found at i:50043753 original size:29 final size:29
Alignment explanation
Indices: 50043719--50043879 Score: 83
Period size: 29 Copynumber: 5.6 Consensus size: 29
50043709 TACTCGATTT
* * *
50043719 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
50043748 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
50043777 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * *** * *
50043806 TGCACACTCAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
50043835 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
50043864 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
50043880 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
28 1 0.01
29 108 0.98
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:50043811 original size:58 final size:59
Alignment explanation
Indices: 50043718--50043879 Score: 195
Period size: 58 Copynumber: 2.8 Consensus size: 59
50043708 ATACTCGATT
** * ** * *
50043718 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACACAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTCAGTGCCATACCCTTCCAGCA
***
50043776 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATACCCTTCCAGCA
*
50043835 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCA
50043880 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
57 4 0.04
58 86 0.95
59 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATACCCTTCCAGCA
Found at i:50049372 original size:43 final size:40
Alignment explanation
Indices: 50049273--50049427 Score: 231
Period size: 40 Copynumber: 3.8 Consensus size: 40
50049263 TATTCGGATG
50049273 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
50049313 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
*
50049356 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
50049396 ATATCCAGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
50049428 GAATTGCTAT
Statistics
Matches: 104, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
39 2 0.02
40 65 0.62
43 35 0.34
44 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:50049416 original size:83 final size:83
Alignment explanation
Indices: 50049277--50049429 Score: 279
Period size: 83 Copynumber: 1.8 Consensus size: 83
50049267 CGGATGATAT
* *
50049277 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCAGGCGAAGACCCGAAGGCATTTG
50049342 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTATAC
*
50049360 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCAGGCGAAGACCCGAAGGCATTTG
50049425 TGCGA
66 TGCGA
50049430 ATTGCTATAT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 67 1.00
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (83 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCAGGCGAAGACCCGAAGGCATTTG
TGCGAGTAGTTGCTATAC
Found at i:50049438 original size:40 final size:40
Alignment explanation
Indices: 50049273--50049456 Score: 221
Period size: 40 Copynumber: 4.5 Consensus size: 40
50049263 TATTCGGATG
*
50049273 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
*
50049313 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AG-TGACT
* *
50049356 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
* * *
50049396 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAATTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACT
* *
50049436 ATAT-CTGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50049457 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
39 16 0.13
40 70 0.56
41 3 0.02
43 34 0.27
44 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
Done.