Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 173 of 378
Found at i:50350555 original size:30 final size:30
Alignment explanation
Indices: 50350519--50350580 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
50350509 AAGTTCTAGT
50350519 TGAAGTGTGATAGTGATAGTAGGATCAGAG
1 TGAAGTGTGATAGTGATAGTAGGATCAGAG
*
50350549 TGAAGTGTGATAGTGATAGTAGGATTAGAG
1 TGAAGTGTGATAGTGATAGTAGGATCAGAG
50350579 TG
1 TG
50350581 CGCAGCGATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.32, C:0.02, G:0.37, T:0.29
Consensus pattern (30 bp):
TGAAGTGTGATAGTGATAGTAGGATCAGAG
Found at i:50350591 original size:30 final size:30
Alignment explanation
Indices: 50350527--50350597 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
50350517 GTTGAAGTGT
* *
50350527 GATAGTGATAGTAGGATCAGAGTGAAGTGT
1 GATAGTGATAGTAGGATCAGAGTGAAGAGC
* *
50350557 GATAGTGATAGTAGGATTAGAGTG-CGCAGC
1 GATAGTGATAGTAGGATCAGAGTGAAG-AGC
50350587 GATAGTG-TAGT
1 GATAGTGATAGT
50350598 GGGTAGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 5 0.14
30 31 0.86
ACGTcount: A:0.31, C:0.06, G:0.37, T:0.27
Consensus pattern (30 bp):
GATAGTGATAGTAGGATCAGAGTGAAGAGC
Found at i:50351536 original size:27 final size:27
Alignment explanation
Indices: 50351512--50351849 Score: 267
Period size: 27 Copynumber: 12.6 Consensus size: 27
50351502 TTAGTTTACT
* **
50351512 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50351539 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
50351566 AAATTACTAAAATA-CCCTGTGTTTATA
1 AAATTACCAAAATACCCCTG-GTTTGTA
*
50351593 AAATTACCAAAA-ACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
50351619 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
50351646 AAATTATTAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
50351673 AAATTACCAAAATACCCTTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
50351700 AAATTACTGAAATA-CCCTCGATTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * * * ***
50351727 AAATTGCCGAAATA-TCGTCAATTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * *
50351753 AAATTACTGAAATA-CCCTCGATTGGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * * *
50351780 AAATTATCGAAATACCCTTAGTTTAG-A
1 AAATTACCAAAATACCCCTGGTTT-GTA
** *
50351807 AAATTACTGAAATA-CCCTCGATTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
**
50351834 AAATTACTGAAATACC
1 AAATTACCAAAATACC
50351850 TTCGACTTGT
Statistics
Matches: 255, Mismatches: 46, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
26 50 0.20
27 200 0.78
28 5 0.02
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:50351702 original size:107 final size:107
Alignment explanation
Indices: 50351512--50351706 Score: 311
Period size: 107 Copynumber: 1.8 Consensus size: 107
50351502 TTAGTTTACT
* *
50351512 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
50351577 ATACCCTGTGTTTATAAAATTACCAAAAACCTCTGGTTTGTA
66 ATACCCTGTGTTTATAAAATTACCAAAAACCTCTGGTTTGTA
** **
50351619 AAATTACCAAAATACCCCTGGTTTGTAAAATTATTAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
*
50351684 ATACCCT-TGATTTGTAAAATTAC
66 ATACCCTGTG-TTTATAAAATTAC
50351707 TGAAATACCC
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
106 2 0.03
107 78 0.98
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (107 bp):
AAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCTGTGTTTATAAAATTACCAAAAACCTCTGGTTTGTA
Found at i:50351752 original size:107 final size:108
Alignment explanation
Indices: 50351538--50351849 Score: 350
Period size: 107 Copynumber: 2.9 Consensus size: 108
50351528 CTTGGTTTAC
* * * *
50351538 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTGTG-TTTATAAAATTAC-C
1 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCT-TGATTTGTAAAATTACTG
* * * ***
50351601 AAA-AACCTCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGT
65 AAATACCCTC-GATTTGTAAAATTACCGAAATACCCCTCAATTGT
*
50351645 AAAATTATTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACTGA
1 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACTGA
* * *
50351710 AATACCCTCGATTTGTAAAATTGCCGAAATA-TCGTCAATTGT
66 AATACCCTCGATTTGTAAAATTACCGAAATACCCCTCAATTGT
* * * * *
50351752 AAAATTACTGAAATA-CCCTCGATTGGTAAAATTATCGAAATACCCTT-AGTTTAG-AAAATTAC
1 AAAATTACTAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTTGA-TTT-GTAAAATTAC
*
50351814 TGAAATACCCTCGATTTGTAAAATTACTGAAATACC
63 TGAAATACCCTCGATTTGTAAAATTACCGAAATACC
50351850 TTCGACTTGT
Statistics
Matches: 175, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
106 8 0.05
107 139 0.79
108 23 0.13
109 5 0.03
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (108 bp):
AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACTGA
AATACCCTCGATTTGTAAAATTACCGAAATACCCCTCAATTGT
Found at i:50351752 original size:134 final size:132
Alignment explanation
Indices: 50351512--50351864 Score: 381
Period size: 134 Copynumber: 2.6 Consensus size: 132
50351502 TTAGTTTACT
* * * * *
50351512 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACTAA
1 AAATTATCAAAATACCCTTAGTTT-GAAAATTACCAAAATACCCTTGA-TTTGTAAAATTACTGA
* * ***
50351576 AATACCCT-GTGTTTATAAAATTACCAAAAACCTCTGGTTTGTAAAATTACCAAAATACCC-CTG
64 AATACCCTCG-ATTTGTAAAATTACCAAAAA-CTCTCAATTGTAAAATTACCAAAATACCCTC-G
* *
50351639 GTTTGTA
126 ATTGGTA
* *
50351646 AAATTATTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACTGAA
1 AAATTATCAAAATACCCTTAGTTTG-AAAATTACCAAAATACCCTTGATTTGTAAAATTACTGAA
* * **
50351711 ATACCCTCGATTTGTAAAATTGCCGAAATA-TCGTCAATTGTAAAATTACTGAAATACCCTCGAT
65 ATACCCTCGATTTGTAAAATTACC-AAAAACTC-TCAATTGTAAAATTACCAAAATACCCTCGAT
50351775 TGGTA
128 TGGTA
* ** *
50351780 AAATTATCGAAATACCCTTAGTTTAGAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAA
1 AAATTATCAAAATACCCTTAGTTT-GAAAATTACCAAAATACCCTTGATTTGTAAAATTACTGAA
* *
50351845 ATACCTTCGACTTGTAAAAT
65 ATACCCTCGATTTGTAAAAT
50351865 AATCAAAGTA
Statistics
Matches: 186, Mismatches: 26, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
133 2 0.01
134 176 0.95
135 8 0.04
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (132 bp):
AAATTATCAAAATACCCTTAGTTTGAAAATTACCAAAATACCCTTGATTTGTAAAATTACTGAAA
TACCCTCGATTTGTAAAATTACCAAAAACTCTCAATTGTAAAATTACCAAAATACCCTCGATTGG
TA
Found at i:50351876 original size:27 final size:27
Alignment explanation
Indices: 50351641--50351877 Score: 114
Period size: 27 Copynumber: 8.8 Consensus size: 27
50351631 TACCCCTGGT
* * * *
50351641 TTGTAAAATTATTAAAATACCC-CTAGT
1 TTGTAAAATTAATCAAATACCCTCGA-C
* * *
50351668 TTGTAAAATT-ACCAAAATACCCTTGAT
1 TTGTAAAATTAATC-AAATACCCTCGAC
* * *
50351695 TTGTAAAATTACTGAAATACCCTCGAT
1 TTGTAAAATTAATCAAATACCCTCGAC
** * * *
50351722 TTGTAAAATT-GCCGAAATATCGTC-AA
1 TTGTAAAATTAATC-AAATACCCTCGAC
* *
50351748 TTGTAAAATTACTGAAATACCCTCGA-
1 TTGTAAAATTAATCAAATACCCTCGAC
* *
50351774 TTGGTAAAATT-ATCGAAATACCCT-TAG
1 TT-GTAAAATTAATC-AAATACCCTCGAC
* * *
50351801 TT-TAGAAAATTACTGAAATACCCTCGAT
1 TTGT--AAAATTAATCAAATACCCTCGAC
* * *
50351829 TTGTAAAATTACTGAAATACCTTCGAC
1 TTGTAAAATTAATCAAATACCCTCGAC
50351856 TTGTAAAA-TAATCAAAGTACCC
1 TTGTAAAATTAATCAAA-TACCC
50351878 CCAATTTACA
Statistics
Matches: 163, Mismatches: 32, Indels: 30
0.72 0.14 0.13
Matches are distributed among these distances:
25 1 0.01
26 29 0.18
27 127 0.78
28 5 0.03
29 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTAATCAAATACCCTCGAC
Found at i:50351877 original size:54 final size:55
Alignment explanation
Indices: 50351512--50351864 Score: 302
Period size: 54 Copynumber: 6.6 Consensus size: 55
50351502 TTAGTTTACT
* * ** ** *
50351512 AAATTACCAAAATACCCTT-GGTTTACAAAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCGAAATACCCTTCGATTTGTAAAATTACTGAAATACCCTCGA-TTTGTA
** * * * *
50351566 AAATTACTAAAATACCCTGT-G-TTTATAAAATTAC-CAAA-AACCTCTGGTTTGTA
1 AAATTACCGAAATACCCT-TCGATTTGTAAAATTACTGAAATACCCTC-GATTTGTA
* * * * * *
50351619 AAATTACCAAAATACCCCT-GGTTTGTAAAATTATTAAAATACCC-CTAGTTTGTA
1 AAATTACCGAAATACCCTTCGATTTGTAAAATTACTGAAATACCCTCGA-TTTGTA
*
50351673 AAATTACCAAAATACCCTT-GATTTGTAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTA
* * * * *
50351727 AAATTGCCGAAATA-TCGTC-AATTGTAAAATTACTGAAATACCCTCGATTGGTA
1 AAATTACCGAAATACCCTTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTA
* *
50351780 AAATTATCGAAATACCCTTAG-TTTAG-AAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTTCGATTT-GTAAAATTACTGAAATACCCTCGATTTGTA
* *
50351834 AAATTACTGAAATA-CCTTCGACTTGTAAAAT
1 AAATTACCGAAATACCCTTCGATTTGTAAAAT
50351865 AATCAAAGTA
Statistics
Matches: 249, Mismatches: 36, Indels: 28
0.80 0.12 0.09
Matches are distributed among these distances:
52 5 0.02
53 89 0.36
54 147 0.59
55 8 0.03
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (55 bp):
AAATTACCGAAATACCCTTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTA
Found at i:50351893 original size:81 final size:81
Alignment explanation
Indices: 50351667--50351929 Score: 205
Period size: 81 Copynumber: 3.3 Consensus size: 81
50351657 ATACCCCTAG
** * * * * * **
50351667 TTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTA-CTGAAATACCCTCGATTTGTAAAAT
1 TTTGTAAAATTACTGAAATACCCTCGATTGGTAAAATAATC-GAAATACCCCCAATTTACAAAAT
* * *
50351731 TGCCGA-AATATCGTC-A
65 TACC-ATAATACCCTCGA
* * ** * *
50351747 ATTGTAAAATTACTGAAATACCCTCGATTGGTAAAATTATCGAAATACCCTTAGTTTAGAAAATT
1 TTTGTAAAATTACTGAAATACCCTCGATTGGTAAAATAATCGAAATACCCCCAATTTACAAAATT
*
50351812 ACTGA-AATACCCTCGA
66 AC-CATAATACCCTCGA
* *
50351828 TTTGTAAAATTACTGAAATACCTTCGACTT-GTAAAATAATC-AAAGTACCCCCAATTTACAGAA
1 TTTGTAAAATTACTGAAATACCCTCGA-TTGGTAAAATAATCGAAA-TACCCCCAATTTACAAAA
**
50351891 TTACCATTTTACCCTCGA
64 TTACCATAATACCCTCGA
** *
50351909 TTTACAAAATTAATGAAATAC
1 TTTGTAAAATTACTGAAATAC
50351930 ACCTGTAGGG
Statistics
Matches: 149, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
80 66 0.44
81 81 0.54
82 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (81 bp):
TTTGTAAAATTACTGAAATACCCTCGATTGGTAAAATAATCGAAATACCCCCAATTTACAAAATT
ACCATAATACCCTCGA
Found at i:50351946 original size:27 final size:26
Alignment explanation
Indices: 50351923--50352510 Score: 649
Period size: 27 Copynumber: 21.9 Consensus size: 26
50351913 CAAAATTAAT
* *
50351923 GAAATACACCTGTAGGGTTGAATTACC
1 GAAATAC-CCTGTAGGGTAGAAATACC
*
50351950 GAAATACCCTTGTA-AGTAGAAATACC
1 GAAATACCC-TGTAGGGTAGAAATACC
* *
50351976 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATA-CCCTGTAGGGTAGAAATACC
* * *
50352003 AAAATACCCCTGTAGGGTAGAATTATC
1 GAAATA-CCCTGTAGGGTAGAAATACC
* *
50352030 GAAATACCTTTGTAGGGGAGAAATACC
1 GAAATACC-CTGTAGGGTAGAAATACC
* *
50352057 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATA-CCCTGTAGGGTAGAAATACC
* *
50352084 GAAATACCCTTGTAGGGTAGAATTATC
1 GAAATACCC-TGTAGGGTAGAAATACC
*
50352111 TAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCC-TGTAGGGTAGAAATACC
* **
50352138 GAAATACCCTGTAGGGTAGAATTATT
1 GAAATACCCTGTAGGGTAGAAATACC
*
50352164 GAAATACCCCTGTAGGATAGAAATACC
1 GAAATA-CCCTGTAGGGTAGAAATACC
50352191 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCC-TGTAGGGTAGAAATACC
*
50352218 GAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCC-TGTAGGGTAGAAATACC
* * *
50352245 GAAATAACCTTGTAGGGTAGAATTACT
1 GAAAT-ACCCTGTAGGGTAGAAATACC
* *
50352272 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATA-CCCTGTAGGGTAGAAATACC
*
50352299 GAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCC-TGTAGGGTAGAAATACC
* *
50352326 GAAATTCCCTTGTAGGGTTGAAATACC
1 GAAATACCC-TGTAGGGTAGAAATACC
50352353 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCC-TGTAGGGTAGAAATACC
* **
50352380 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATA-CCCTGTAGGGTAGAAATACC
*
50352407 GAAATACCCCTGTAGGATAGAAATACC
1 GAAATA-CCCTGTAGGGTAGAAATACC
*
50352434 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCC-TGTAGGGTAGAAATACC
*
50352461 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATA-CCCTGTAGGGTAGAAATACC
* *
50352488 GAGATACCCTCGTGGGGTA-AAAT
1 GAAATACCCT-GTAGGGTAGAAAT
50352511 TACCATTTTT
Statistics
Matches: 486, Mismatches: 60, Indels: 31
0.84 0.10 0.05
Matches are distributed among these distances:
26 63 0.13
27 412 0.85
28 11 0.02
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (26 bp):
GAAATACCCTGTAGGGTAGAAATACC
Found at i:50352083 original size:81 final size:81
Alignment explanation
Indices: 50351916--50352514 Score: 826
Period size: 81 Copynumber: 7.4 Consensus size: 81
50351906 CGATTTACAA
* * * *
50351916 AATTAATGAAATACACCTGTAGGGTTGAATTACCGAAATACCCTTGTA-AGTAGAAATACCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
50351980 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * *
50351996 AATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAATACCTTTGTAGGGGAGAAATACCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
50352061 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * *
50352077 AATTACTGAAATACCCTTGTAGGGTAGAATTATCTAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
50352142 TA-CCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * *
50352157 AATTATTGAAATACCCCTGTAGGATAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
*
50352222 TACCCTTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * ** * *
50352238 AAATACTGAAATAACCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
* *
50352303 TACCCTTATAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * * *
50352319 AAATACCGAAATTCCCTTGTAGGGTTGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
50352384 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * *
50352400 AATTATTGAAATACCCCTGTAGGATAGAAATACCGAAATACCCTTGTAGGGTAGAAATATCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
50352465 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * *
50352481 AATTACCGAGATA-CCCTCGTGGGGTAAAATTACC
1 AATTACTGAAATACCCCT-GTAGGGTAGAATTACC
50352515 ATTTTTCCCT
Statistics
Matches: 459, Mismatches: 57, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
80 120 0.26
81 339 0.74
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (81 bp):
AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
TACCCCTGTAGGGTAG
Found at i:50352497 original size:54 final size:54
Alignment explanation
Indices: 50351923--50352510 Score: 743
Period size: 54 Copynumber: 10.9 Consensus size: 54
50351913 CAAAATTAAT
* *
50351923 GAAATACACC-TGTAGGGTTGAATTACCGAAATACCCTTGTA-AGTAGAAATACC
1 GAAATAC-CCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
* ** * * *
50351976 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
* * * * * *
50352030 GAAATACCTTTGTAGGGGAGAAATACCGAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
* *
50352084 GAAATACCCTTGTAGGGTAGAATTATCTAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
** * *
50352138 GAAATACCC-TGTAGGGTAGAATTATTGAAATACCCCTGTAGGATAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
* *
50352191 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
* ** * *
50352245 GAAATAACCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
* * * *
50352299 GAAATACCCTTATAGGGTAGAAATACCGAAATTCCCTTGTAGGGTTGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
* * * **
50352353 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
* * * *
50352407 GAAATACCCCTGTAGGATAGAAATACCGAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
* * * *
50352461 GAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTCGTGGGGTA-AAAT
1 GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAAT
50352511 TACCATTTTT
Statistics
Matches: 466, Mismatches: 66, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
52 2 0.00
53 87 0.19
54 377 0.81
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (54 bp):
GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
Found at i:50352974 original size:22 final size:22
Alignment explanation
Indices: 50352941--50353005 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
50352931 TTAAAGCCTT
* * *
50352941 CTGATTATGGCTTTGTGTCAAC
1 CTGACTATGGCTCTGTGCCAAC
50352963 CT-ACATATGGCTCTGTGCCAAC
1 CTGAC-TATGGCTCTGTGCCAAC
*
50352985 CTGACTATGGCTGTGTGCCAA
1 CTGACTATGGCTCTGTGCCAA
50353006 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.92
23 2 0.05
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGACTATGGCTCTGTGCCAAC
Found at i:50353194 original size:27 final size:27
Alignment explanation
Indices: 50353164--50353265 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
50353154 ATTCTGTTAA
* *
50353164 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
50353191 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
50353218 GTGGCTCTGCCACAATATTTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
50353245 GTGTCTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
50353266 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.78
28 7 0.11
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:50353471 original size:6 final size:6
Alignment explanation
Indices: 50353425--50353521 Score: 56
Period size: 6 Copynumber: 15.8 Consensus size: 6
50353415 ATTCTGTTAC
* * * *
50353425 CTGATA CTGATT CTAATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * * *
50353474 CTAATT TTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
50353522 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
5 4 0.06
6 57 0.84
7 5 0.07
8 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.13, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:50353475 original size:37 final size:31
Alignment explanation
Indices: 50353402--50353537 Score: 132
Period size: 31 Copynumber: 4.4 Consensus size: 31
50353392 TTGCATTCAC
50353402 ATTCTAATTTTTGATTCTGTTACCTGATACTG
1 ATTCTAA-TTTTGATTCTGTTACCTGATACTG
50353434 ATTCTAATTTTGATTCTGTTACCTGATACTG
1 ATTCTAATTTTGATTCTGTTACCTGATACTG
* * * * * * *
50353465 ATTCTGATTCTAATTTTGTCACCTAATTCTG
1 ATTCTAATTTTGATTCTGTTACCTGATACTG
* * *
50353496 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTAATTTTGATTCT-GTTACCTGATACTG
* *
50353526 TTTCTTATTTTG
1 ATTCTAATTTTG
50353538 TAATGGGTTA
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
30 15 0.17
31 63 0.72
32 9 0.10
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.51
Consensus pattern (31 bp):
ATTCTAATTTTGATTCTGTTACCTGATACTG
Found at i:50355778 original size:85 final size:86
Alignment explanation
Indices: 50355621--50355780 Score: 211
Period size: 85 Copynumber: 1.9 Consensus size: 86
50355611 ATATATGTTA
50355621 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGACTTATGATTTACATGTAAGACCACATCTGGG
1 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGACTTATGATTTACATGTAAGACCACATCTGGG
50355686 ACATTGGCATCATATTTGATT
66 ACATTGGCATCATATTTGATT
* * * *
50355707 TCGTGTAAGACCCTGTTTGGGACAG-TGGCATTGA--TATTGGA-TTACATGTAAGACCACGTCT
1 TCGTGTAAGACCATGTCTGGGAC-GTTGGCATCGACTTA-T-GATTTACATGTAAGACCACATCT
**
50355768 GGGATGTTGGCAT
63 GGGACATTGGCAT
50355781 TGTACGAGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
84 2 0.03
85 31 0.48
86 31 0.48
87 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (86 bp):
TCGTGTAAGACCATGTCTGGGACGTTGGCATCGACTTATGATTTACATGTAAGACCACATCTGGG
ACATTGGCATCATATTTGATT
Found at i:50355779 original size:43 final size:42
Alignment explanation
Indices: 50355624--50355782 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 42
50355614 TATGTTATCG
* *
50355624 TGTAAGACCATGTCTGGGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATTGA-TAT-TGA-TTACA
* * * * *
50355668 TGTAAGACCACATCTGGGACATTGGCA-TCATATTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATTGATA-TTGATTACA
*
50355710 TGTAAGACC-CTGTTTGGGACAG-TGGCATTGATATTGGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATTGATATT-GATTACA
*
50355753 TGTAAGACCACGTCTGGGATGTTGGCATTG
1 TGTAAGACCACGTCTGGGACGTTGGCATTG
50355783 TACGAGTTTT
Statistics
Matches: 92, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
41 1 0.01
42 28 0.30
43 37 0.40
44 26 0.28
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATTGATATTGATTACA
Found at i:50368185 original size:12 final size:12
Alignment explanation
Indices: 50368154--50368178 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50368144 CCACACATGC
50368154 CCATGTGCTAGG
1 CCATGTGCTAGG
50368166 CCATGTGCTAGG
1 CCATGTGCTAGG
50368178 C
1 C
50368179 GGTGTGCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (12 bp):
CCATGTGCTAGG
Found at i:50370270 original size:42 final size:41
Alignment explanation
Indices: 50370225--50370374 Score: 176
Period size: 42 Copynumber: 3.6 Consensus size: 41
50370215 TGAGACTATG
* *
50370225 TGTAAGACCATATCTGGGATATGGCATCAATTTAAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATTTAAGA-TTCA
*
50370267 TGTAAGACCATATCTGGGATATGGCATCGATGTT-TGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGAT-TTAAGA-TTCA
* * * **
50370309 TGTAAGACCATAGCTGGGTTATTGCCATCGATACAAGATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATTTAAGATT-CA
50370352 TGTAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATG
50370375 ACATTGGTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
42 58 0.63
43 34 0.37
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCGATTTAAGATTCA
Found at i:50376817 original size:27 final size:27
Alignment explanation
Indices: 50376480--50376836 Score: 405
Period size: 27 Copynumber: 13.2 Consensus size: 27
50376470 TAGTTTACCA
* * *
50376480 AATTACTGAAGTACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
50376507 AATTA-TCAAAATACCCCTATAAGGTTG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
50376534 AATTA-TCGAAATACCCCTGTAAGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
50376561 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
50376588 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
50376615 AATTATTAAAATACCCCCGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
50376642 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
50376669 AATTACTGAAATACCCCCGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
50376696 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
50376723 AATTACTAAAATACCCCCGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* **
50376750 AATTATTGAAATACCTTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
50376777 AAATATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
50376804 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
50376831 AATTAC
1 AATTAC
50376837 CATTTTGCCC
Statistics
Matches: 286, Mismatches: 40, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 282 0.99
28 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:50376836 original size:108 final size:108
Alignment explanation
Indices: 50376480--50376836 Score: 500
Period size: 108 Copynumber: 3.3 Consensus size: 108
50376470 TAGTTTACCA
* * * * ** *
50376480 AATTACTGAAGTACCCCTATAAGGTAGAATTA-TCAAAATACCCCTATAAGGTTGAATTATCGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACT-AAAATACCCCCGTAAGGTAGAATTATCGAA
* *
50376544 ATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAAGGTAG
65 ATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
*
50376588 AATTACCGAAATACCCCTGTAGGGTAGAATTATTAAAATACCCCCGTAAGGTAGAATTATCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCCGTAAGGTAGAATTATCGAAA
*
50376653 TACCCTTGTAGGGTAGAATTACTGAAATACCCCCGTAAGGTAG
66 TACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* *
50376696 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCCGTAGGGTAGAATTATTGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCCGTAAGGTAGAATTATCGAAA
* * * *
50376761 TACCTTTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAG
66 TACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* * * * *
50376804 AATTACTGAGATACCCTTGTGGGGTAAAATTAC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTAC
50376837 CATTTTGCCC
Statistics
Matches: 225, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
108 224 1.00
109 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (108 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCCGTAAGGTAGAATTATCGAAA
TACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
Found at i:50377583 original size:27 final size:26
Alignment explanation
Indices: 50377539--50377590 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
50377529 CTCGCTGCAA
*
50377539 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
50377566 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
50377591 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:50377654 original size:31 final size:32
Alignment explanation
Indices: 50377606--50377666 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
50377596 CTCGCTGCAA
*
50377606 TCTGGTGGCTTCACCAC-ATATATATATCTAT
1 TCTGGTGGCCTCACCACAATATATATATCTAT
*
50377637 TCTGGTGGCCT-AGCCACAATATCTATATCT
1 TCTGGTGGCCTCA-CCACAATATATATATCT
50377667 GGTGACTTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 1 0.04
31 14 0.54
32 11 0.42
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTCACCACAATATATATATCTAT
Found at i:50377681 original size:27 final size:26
Alignment explanation
Indices: 50377629--50377687 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
50377619 CCACATATAT
*
50377629 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTATTCTGGTGACCTAGCCACA
* * *
50377655 ATATCTATATCTGGTGACTTCGTCACA
1 ATATCTAT-TCTGGTGACCTAGCCACA
50377682 ATATCT
1 ATATCT
50377688 GGTAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (26 bp):
ATATCTATTCTGGTGACCTAGCCACA
Found at i:50384921 original size:42 final size:42
Alignment explanation
Indices: 50384869--50384951 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
50384859 CTGAGACTAT
*
50384869 GTGTATGACCATATCTAGGATATGGCATCAATTTAAGACTTC
1 GTGTAAGACCATATCTAGGATATGGCATCAATTTAAGACTTC
*
50384911 GTGTAAGACCATATCTGGGATATGGCATCAATTTAAGACTT
1 GTGTAAGACCATATCTAGGATATGGCATCAATTTAAGACTT
50384952 GGTTATTTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (42 bp):
GTGTAAGACCATATCTAGGATATGGCATCAATTTAAGACTTC
Found at i:50386096 original size:40 final size:40
Alignment explanation
Indices: 50386041--50386164 Score: 169
Period size: 40 Copynumber: 3.1 Consensus size: 40
50386031 ATGCATGTAC
* *
50386041 ATAGCCGAAGGTATCTCAAATCGCACACTAAGTGCCATAT
1 ATAGCCGAAGCTATCTCAAATCGCACACTAAATGCCATAT
*
50386081 ATAGCTGAAGCTATCT-AAATCTCGCACACTAAATGCCATAT
1 ATAGCCGAAGCTATCTCAAA--TCGCACACTAAATGCCATAT
* * *
50386122 ATAGCCGAAGCTATGTCGAATCGCACACTAAATGCCACAT
1 ATAGCCGAAGCTATCTCAAATCGCACACTAAATGCCATAT
50386162 ATA
1 ATA
50386165 ACTGATTTGT
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.04
40 36 0.49
41 33 0.45
42 2 0.03
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.23
Consensus pattern (40 bp):
ATAGCCGAAGCTATCTCAAATCGCACACTAAATGCCATAT
Found at i:50387423 original size:27 final size:28
Alignment explanation
Indices: 50387371--50387428 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
50387361 CATCACATAG
50387371 GGGAAAAATAGTCATCTTACCATATA-A
1 GGGAAAAATAGTCATCTTACCATATATA
* *
50387398 GGGAATAATAGTCATTTTATCC-TATATA
1 GGGAAAAATAGTCATCTTA-CCATATATA
50387426 GGG
1 GGG
50387429 GGTCTAGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (28 bp):
GGGAAAAATAGTCATCTTACCATATATA
Found at i:50389814 original size:30 final size:30
Alignment explanation
Indices: 50389778--50389937 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
50389768 GACAAGATTG
* * * * *
50389778 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
50389808 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
50389836 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
50389865 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
50389895 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
50389924 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
50389938 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:50389905 original size:59 final size:57
Alignment explanation
Indices: 50389778--50389937 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
50389768 GACAAGATTG
* * * * * *
50389778 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
50389836 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
50389895 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
50389938 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:50397128 original size:66 final size:68
Alignment explanation
Indices: 50397053--50397239 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
50397043 TAGTACCACT
*
50397053 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
50397115 CACG
65 CACG
50397119 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
50397184 ATCACG
63 ATCACG
50397190 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
50397240 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:50397164 original size:71 final size:71
Alignment explanation
Indices: 50397076--50397239 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50397066 CGATTTGTCT
50397076 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50397141 CTTTCA
66 CTTTCA
50397147 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50397212 CTTTCA
66 CTTTCA
50397218 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
50397240 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:50397277 original size:71 final size:70
Alignment explanation
Indices: 50397076--50397273 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
50397066 CGATTTGTCT
* * *
50397076 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
50397141 CTTTCA
65 CTTTCA
* * *
50397147 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
50397212 CTTTCA
65 CTTTCA
* *
50397218 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
50397274 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:50399662 original size:39 final size:40
Alignment explanation
Indices: 50399537--50399665 Score: 131
Period size: 40 Copynumber: 3.3 Consensus size: 40
50399527 TAACGAGCAA
* ** *
50399537 AATGCCTTCGGGAC-GAAGCCCGG-TTATAGCGACTTGCACG
1 AATGCCTTCGGGACTTAA-CCCGGATT-TAGTAACTCGCACG
* *
50399577 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* * *
50399616 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
50399655 AATGCCTTCGG
1 AATGCCTTCGG
50399666 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 30 0.39
41 4 0.05
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
Found at i:50400548 original size:28 final size:27
Alignment explanation
Indices: 50400516--50400575 Score: 111
Period size: 28 Copynumber: 2.2 Consensus size: 27
50400506 CACAAATCTT
50400516 ACTTTCCATGCAATGAGCATAAATACAC
1 ACTTTCCATGCAATGAGCATAAAT-CAC
50400544 ACTTTCCATGCAATGAGCATAAATCAC
1 ACTTTCCATGCAATGAGCATAAATCAC
50400571 ACTTT
1 ACTTT
50400576 TGGATGTACC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 8 0.25
28 24 0.75
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (27 bp):
ACTTTCCATGCAATGAGCATAAATCAC
Found at i:50407675 original size:40 final size:39
Alignment explanation
Indices: 50407631--50407759 Score: 111
Period size: 40 Copynumber: 3.3 Consensus size: 39
50407621 GACTCGCTCA
*
50407631 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
50407670 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
* * * * ** *
50407710 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
50407748 GAATGCCTTCGG
1 -AATGCCTTCGG
50407760 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 28 0.36
41 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:50407759 original size:78 final size:80
Alignment explanation
Indices: 50407666--50407812 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 80
50407656 ATAGCGACTT
* * *
50407666 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
50407728 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
50407744 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
50407809 CGGA
66 CGGA
50407813 CATCATTCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.50
79 17 0.28
80 10 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:50407796 original size:40 final size:37
Alignment explanation
Indices: 50407647--50407812 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 37
50407637 TTCGGGACGA
* ** *
50407647 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
50407687 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
50407725 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
50407765 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTC-GGA-TT
50407805 AGCCCGGA
1 AGCCCGGA
50407813 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 25 0.25
39 20 0.20
40 49 0.48
41 7 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:50411482 original size:30 final size:30
Alignment explanation
Indices: 50411446--50411605 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
50411436 GACAAGATTG
* * * * *
50411446 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
50411476 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
50411504 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
50411533 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
50411563 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
50411592 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
50411606 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:50411573 original size:59 final size:57
Alignment explanation
Indices: 50411446--50411605 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
50411436 GACAAGATTG
* * * * * *
50411446 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
50411504 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
50411563 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
50411606 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:50417420 original size:21 final size:22
Alignment explanation
Indices: 50417394--50417444 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
50417384 ATTTTTATGT
*
50417394 TTAAAATT-AGTGTTTCTAG-GG
1 TTAAAATTGAGTATTT-TAGAGG
50417415 TTAAAATTTGAGTATTTTAGAGG
1 TTAAAA-TTGAGTATTTTAGAGG
50417438 TTAAAAT
1 TTAAAAT
50417445 GTCGGGTTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 6 0.23
22 6 0.23
23 14 0.54
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (22 bp):
TTAAAATTGAGTATTTTAGAGG
Found at i:50420316 original size:28 final size:28
Alignment explanation
Indices: 50420243--50420316 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
50420233 CAAATATGGT
* * *
50420243 ACTTAGTGTACGAAATATTGAGAATGGC
1 ACTTAGTGTGCAAAATATTGAGAATGAC
*
50420271 ACTTAGTGTGCAATATATTGAGAATGAC
1 ACTTAGTGTGCAAAATATTGAGAATGAC
*
50420299 ACTTCGTGTGCAAAATAT
1 ACTTAGTGTGCAAAATAT
50420317 CAAATGATTC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (28 bp):
ACTTAGTGTGCAAAATATTGAGAATGAC
Found at i:50420523 original size:43 final size:44
Alignment explanation
Indices: 50420422--50420536 Score: 137
Period size: 44 Copynumber: 2.6 Consensus size: 44
50420412 GATATAATGG
* * *
50420422 TGATATTCGGGCTTTGAGCCTAGCAAGCTTTAAGCTGGTGAATAA
1 TGATA-TCGGGCTTCGAGCCTAGCAGGCTATAAGCTGGTGAATAA
*
50420467 T-ATTATCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTG-A-AA
1 TGA-TATCGGGCTTCGAGCCTAGCAGGCTATAA-GCTGGTGAATAA
*
50420510 TGATATCGGGCTTCAAGCCTAGCAGGC
1 TGATATCGGGCTTCGAGCCTAGCAGGC
50420537 GAAATGCCGG
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
43 25 0.41
44 26 0.43
45 10 0.16
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (44 bp):
TGATATCGGGCTTCGAGCCTAGCAGGCTATAAGCTGGTGAATAA
Found at i:50420629 original size:40 final size:40
Alignment explanation
Indices: 50420483--50420629 Score: 127
Period size: 40 Copynumber: 3.6 Consensus size: 40
50420473 CGGGCTTCGG
* *
50420483 GCCTAGCAGGCTATAATGCTGGTGAAATG-ATATCGGGCTTCAA
1 GCCTAGCAGGCTA-AATGCCGGTG--ATGAAT-TCGGGCTTAAA
* * * *
50420526 GCCTAGCAGGCGAAATGCCGGT-ATGAGTTCAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGATGAATTCGGGCTTAAA
* *** * *
50420565 GTCTAGCAGGCTTTGTGCCAGTGATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGATGAATTCGGGCTTAAA
*
50420605 ACCTAGCAGGCTAAATGCCGGTGAT
1 GCCTAGCAGGCTAAATGCCGGTGAT
50420630 TTGATAAAAG
Statistics
Matches: 80, Mismatches: 22, Indels: 7
0.73 0.20 0.06
Matches are distributed among these distances:
39 27 0.34
40 33 0.41
42 8 0.10
43 12 0.15
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (40 bp):
GCCTAGCAGGCTAAATGCCGGTGATGAATTCGGGCTTAAA
Found at i:50430804 original size:40 final size:38
Alignment explanation
Indices: 50430748--50430900 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 38
50430738 TGATATAGCG
* *
50430748 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAAT
1 ACTCGCACAAAAGCCTTCGGGACATAGCCCGGTT-TAGT
* * * *
50430787 AGCTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGT
1 A-CTCGCACAAAAGCCTTCGGGACATAGCCCGG-TTTAGT
* *
50430827 AACTCGCACAAATGCCTTCGGGA-ATTGACCCGGATTTAGT
1 -ACTCGCACAAAAGCCTTCGGGACATAG-CCCGG-TTTAGT
* *
50430867 CACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 -AC-TCGCACAAAAGCCTTCGGGACATAGCCCGG
50430901 ATACCATTCG
Statistics
Matches: 92, Mismatches: 16, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
39 2 0.02
40 62 0.67
41 26 0.28
42 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (38 bp):
ACTCGCACAAAAGCCTTCGGGACATAGCCCGGTTTAGT
Found at i:50434002 original size:46 final size:46
Alignment explanation
Indices: 50433935--50434106 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
50433925 AACCCGCCCC
* *
50433935 TAAGTGAACTCGGACTCAACTCAGCGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
50433981 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
50434029 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
50434074 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
50434107 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 58 0.56
47 27 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:50434049 original size:93 final size:93
Alignment explanation
Indices: 50433940--50434110 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
50433930 GCCCCTAAGT
* * * *
50433940 GAACTCGGACTCAACTCAGCGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50434005 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
50434033 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50434098 CGAGTTCGGATGC
66 CGAGTTCGGATGC
50434111 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:50441761 original size:28 final size:27
Alignment explanation
Indices: 50441727--50441782 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
50441717 TTAGCATACT
*
50441727 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-CTAAAAATACCGAAATACCC
* *
50441755 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTCTAAAAATACCGAAATACCC
50441782 T
1 T
50441783 CGATTTGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACCC
Found at i:50441766 original size:27 final size:28
Alignment explanation
Indices: 50441736--50441854 Score: 104
Period size: 27 Copynumber: 4.4 Consensus size: 28
50441726 TTTAGTTTAC
50441736 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
50441763 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
** * *
50441790 TAAAATTACTTAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* *
50441817 TAAAATTACC-AAAGTACCC-TCGATTTC
1 TAAAATTACCGAAA-TACCCTTAGATTTG
*
50441844 CAAAATTACCG
1 TAAAATTACCG
50441855 TTTTACCCCC
Statistics
Matches: 77, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
26 7 0.09
27 68 0.88
28 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:50442042 original size:27 final size:27
Alignment explanation
Indices: 50441831--50442041 Score: 253
Period size: 27 Copynumber: 7.8 Consensus size: 27
50441821 ATTACCAAAG
* *
50441831 TACCCTCGATTTCCAAAATTACCGTTT
1 TACCCTCGATTTACATAATTACCGTTT
* *
50441858 TACCCCCGATTTACATAATTACTGTTT
1 TACCCTCGATTTACATAATTACCGTTT
50441885 TACCCTCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACATAATTACCGTTT
50441912 TACTCC-CGATTTACATAATTACCGTTT
1 TAC-CCTCGATTTACATAATTACCGTTT
* *
50441939 TACCCTCGACTTACATAATTACCATTT
1 TACCCTCGATTTACATAATTACCGTTT
* * * ***
50441966 TACCCTTGATTTATAGAATTATTATTT
1 TACCCTCGATTTACATAATTACCGTTT
* * *
50441993 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACATAATTACCGTTT
* *
50442020 TACCCTCGATTTAAAAAATTAC
1 TACCCTCGATTTACATAATTAC
50442042 TAAAATACCC
Statistics
Matches: 162, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 158 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACATAATTACCGTTT
Found at i:50442050 original size:27 final size:27
Alignment explanation
Indices: 50442020--50442159 Score: 147
Period size: 27 Copynumber: 5.2 Consensus size: 27
50442010 ATTACTGTTT
** *
50442020 TACCCTCGATTTAAAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
50442047 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
50442074 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * * * **
50442101 TACCTTTGGTTTGTGAAATTACTGAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
50442128 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
50442155 TACCC
1 TACCC
50442160 CAGATTTACA
Statistics
Matches: 89, Mismatches: 22, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:50442067 original size:54 final size:54
Alignment explanation
Indices: 50442020--50442159 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
50442010 ATTACTGTTT
* ** * **
50442020 TACCCTCGATTTAAAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTGAAA
* * *
50442074 TACCC-CTAGTTTGTAAAATTACCAAAATACCTTTGGTTTGTGAAATTACTGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTGAAA
50442128 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
50442160 CAGATTTACA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 71 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTGAAA
Found at i:50442078 original size:81 final size:81
Alignment explanation
Indices: 50441777--50442078 Score: 230
Period size: 81 Copynumber: 3.7 Consensus size: 81
50441767 AATACTGAAA
** * * * *
50441777 TACCCTCGATTTGTAAAATTACTTAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCCTCGAT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTT-GATTTATAAAATTACCAAATTACCCTCGAT
*
50441841 TTCCAAAATTACCGTTT
65 TTACAAAATTACCGTTT
* * **** * * * ***
50441858 TACCCCCGATTTACATAATTACTGTTTTACCCTCGATTTACATAATTACCGTTTTACTCC-CGAT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAAAATTACCAAATTAC-CCTCGAT
*
50441922 TTACATAATTACCGTTT
65 TTACAAAATTACCGTTT
* * * *** * ** ** *
50441939 TACCCTCGACTTACATAATTACCATTTTACCCTTGATTTATAGAATTATTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAAAATTACCAAATTACCCTCGATT
* *
50442004 TACAGAATTACTGTTT
66 TACAAAATTACCGTTT
* * * *
50442020 TACCCTCGATTTAAAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAAAATTACCAAATTACCC
50442079 CTAGTTTGTA
Statistics
Matches: 171, Mismatches: 47, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
80 2 0.01
81 164 0.96
82 5 0.03
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAAAATTACCAAATTACCCTCGATT
TACAAAATTACCGTTT
Found at i:50442182 original size:54 final size:54
Alignment explanation
Indices: 50442020--50442187 Score: 137
Period size: 54 Copynumber: 3.1 Consensus size: 54
50442010 ATTACTGTTT
* ** * ** *
50442020 TACCCTCGATTTAAAAAATTACTAAAATACCCTTGGTTTGTA-AAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCAGATTTG-ACAAATTA-CAGAAA
* *** * ** *
50442074 TACCC-CTAGTTTGTAAAATTACCAAAATACCTTTGGTTTGTGAAATTACTGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCAGATTTGACAAATTACAGAAA
50442128 TACCCTCAATTTGTAAAATTACCAAAATACCCCAGATTT-ACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCAGATTTGACAAA-TTACAGAAA
50442182 TACCCT
1 TACCCT
50442188 TGACTTTCTA
Statistics
Matches: 93, Mismatches: 16, Indels: 10
0.78 0.13 0.08
Matches are distributed among these distances:
53 5 0.05
54 87 0.94
55 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCAGATTTGACAAATTACAGAAA
Found at i:50442333 original size:27 final size:27
Alignment explanation
Indices: 50442303--50442394 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
50442293 ACCCCTATTA
*
50442303 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
50442330 GGTAAAGTGACCGTAAAGCCCCTGCAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
50442357 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
50442384 GGTAAAATGAC
1 GGTAAAATGAC
50442395 GAATATGCCC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:50443501 original size:27 final size:27
Alignment explanation
Indices: 50443462--50443560 Score: 94
Period size: 27 Copynumber: 3.6 Consensus size: 27
50443452 TTAGAATACT
*
50443462 TTAGTTTACTAAAATTA-TCGAAATACCC
1 TTAGTTT-GTAAAATTACT-GAAATACCC
*
50443490 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACTGAAATACCC
* * *
50443517 TCAATTTGTAAAATTACTAAAATA-CC
1 TTAGTTTGTAAAATTACTGAAATACCC
* *
50443543 TTCGACTTGTAAAATTAC
1 TTAG-TTTGTAAAATTAC
50443561 CAAAGTACCC
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
26 3 0.05
27 48 0.81
28 8 0.14
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.35
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACTGAAATACCC
Found at i:50443569 original size:27 final size:26
Alignment explanation
Indices: 50443471--50443588 Score: 92
Period size: 27 Copynumber: 4.4 Consensus size: 26
50443461 TTTAGTTTAC
* * * *
50443471 TAAAATTATCGAAATACCCTTAGTTTG
1 TAAAATTACCAAAATACCC-TCGATTG
* ** *
50443498 TAAAAATACTGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCTCGA-TTG
* *
50443525 TAAAATTACTAAAATACCTTCGACTTG
1 TAAAATTACCAAAATACCCTCGA-TTG
* *
50443552 TAAAATTACCAAAGTACCCTCGATTT
1 TAAAATTACCAAAATACCCTCGATTG
50443578 TCAAAATTACC
1 T-AAAATTACC
50443589 GTTTTACCCC
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 4 0.05
27 70 0.95
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (26 bp):
TAAAATTACCAAAATACCCTCGATTG
Found at i:50443596 original size:27 final size:27
Alignment explanation
Indices: 50443566--50443775 Score: 219
Period size: 27 Copynumber: 7.8 Consensus size: 27
50443556 ATTACCAAAG
* *
50443566 TACCCTCGATTTTCAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
50443593 TACCC-CTGATTTACATAATTACCGTTA
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
50443620 TACCC-CTGATTTACATAATTACTGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
50443647 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
50443673 TACCCTCGACTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* ***
50443700 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
** **
50443727 TACCCTTAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
50443754 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
50443776 TAAAATACCC
Statistics
Matches: 161, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 25 0.16
27 136 0.84
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:50443701 original size:107 final size:108
Alignment explanation
Indices: 50443566--50443775 Score: 262
Period size: 107 Copynumber: 2.0 Consensus size: 108
50443556 ATTACCAAAG
* * * * * *
50443566 TACCCTCGATTTTCAAAATTACCGTTTTACCC-CTGATTTACATAATTACCGTTATACCCCTGAT
1 TACCCTCGACTTACAAAATTACCATTTTACCCTC-GATTTACAGAATTACCATTATACCCCTAAT
* * *
50443630 TTACATAATTACTGTTTTACCC-CGATTTACATAATTACCGTTT
65 TTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCGTTT
* * ** * *
50443673 TACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTATAGAATTATTATTTTACCCTTAATT
1 TACCCTCGACTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTATACCCCTAATT
50443738 TACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
66 TACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
50443776 TAAAATACCC
Statistics
Matches: 86, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
107 70 0.81
108 16 0.19
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.40
Consensus pattern (108 bp):
TACCCTCGACTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTATACCCCTAATT
TACAGAATTACTATTTTACCCTCGATTTACAAAATTACCGTTT
Found at i:50443784 original size:27 final size:27
Alignment explanation
Indices: 50443509--50443921 Score: 152
Period size: 27 Copynumber: 15.3 Consensus size: 27
50443499 AAAAATACTG
* ** *
50443509 AAATACCCTCAATTTGTAAAATTACTA
1 AAATACCCTCGATTTACAAAATTACCA
* * **
50443536 AAATACCTTCGACTTGTAAAATTACCA
1 AAATACCCTCGATTTACAAAATTACCA
* * *
50443563 AAGTACCCTCGATTTTCAAAATTACCG
1 AAATACCCTCGATTTACAAAATTACCA
*** * *
50443590 TTTTACCC-CTGATTTACATAATTACCG
1 AAATACCCTC-GATTTACAAAATTACCA
** * **
50443617 TTATACCC-CTGATTTACATAATTACTG
1 AAATACCCTC-GATTTACAAAATTACCA
*** * *
50443644 TTTTACCC-CGATTTACATAATTACCG
1 AAATACCCTCGATTTACAAAATTACCA
*** * *
50443670 TTTTACCCTCGACTTACAGAATTACCA
1 AAATACCCTCGATTTACAAAATTACCA
*** * * **
50443697 TTTTACCCTCGATTTATAGAATTATTA
1 AAATACCCTCGATTTACAAAATTACCA
*** ** * *
50443724 TTTTACCCTTAATTTACAGAATTACTA
1 AAATACCCTCGATTTACAAAATTACCA
*** *
50443751 TTTTACCCTCGATTTACAAAATTACTA
1 AAATACCCTCGATTTACAAAATTACCA
* * **
50443778 AAATACCCTTGGTTTGTAAAATTACCA
1 AAATACCCTCGATTTACAAAATTACCA
* **
50443805 AAATACCC-CTAGTTTGTAAAATTACCA
1 AAATACCCTCGA-TTTACAAAATTACCA
* * ***
50443832 AAATACCCTTGGTTTGTGAAATTA-CA
1 AAATACCCTCGATTTACAAAATTACCA
* **
50443858 GAAATACCCTCAATTTGTAAAATTACCA
1 -AAATACCCTCGATTTACAAAATTACCA
* * *
50443886 AAATACCCTTGATTTACAAAGTTACAA
1 AAATACCCTCGATTTACAAAATTACCA
50443913 AAATACCCT
1 AAATACCCT
50443922 TGACTTTTTA
Statistics
Matches: 322, Mismatches: 58, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
26 27 0.08
27 293 0.91
28 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (27 bp):
AAATACCCTCGATTTACAAAATTACCA
Found at i:50443801 original size:54 final size:54
Alignment explanation
Indices: 50443754--50443921 Score: 196
Period size: 54 Copynumber: 3.1 Consensus size: 54
50443744 ATTACTATTT
* *
50443754 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * *
50443808 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTA-CAGAAA
1 TACCCTCGA-TTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCA-AAA
* * * ** * *
50443862 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTACAAAGTTACAAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
50443916 TACCCT
1 TACCCT
50443922 TGACTTTTTA
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
53 4 0.04
54 91 0.93
55 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:50443812 original size:81 final size:81
Alignment explanation
Indices: 50443727--50443948 Score: 196
Period size: 81 Copynumber: 2.7 Consensus size: 81
50443717 ATTATTATTT
* * *** ***
50443727 TACCCTTAATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTA-AAATACCCTTGGT
1 TACCCTTAATTTACAAAATTACCAAAATACCCTCGATTTACAAAATTAC-AGAAATACCCTCAAT
50443791 TTGTAAAATTACCAAAA
65 TTGTAAAATTACCAAAA
* * ** * * ***
50443808 TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACAGAAATACCCTCAATT
1 TACCCTTAATTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACAGAAATACCCTCAATT
50443873 TGTAAAATTACCAAAA
66 TGTAAAATTACCAAAA
* * * * *
50443889 TACCCTTGATTTACAAAGTTACAAAAATACCCTTGACTTTTTA-AAAATTATAGAAATACC
1 TACCCTTAATTTACAAAATTACCAAAATACCCTCGA---TTTACAAAATTACAGAAATACC
50443949 ATTAGTATAC
Statistics
Matches: 109, Mismatches: 28, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
80 1 0.01
81 90 0.83
83 15 0.14
84 3 0.03
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (81 bp):
TACCCTTAATTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACAGAAATACCCTCAATT
TGTAAAATTACCAAAA
Found at i:50444058 original size:27 final size:27
Alignment explanation
Indices: 50444045--50444128 Score: 141
Period size: 27 Copynumber: 3.1 Consensus size: 27
50444035 TAGGTAAAAA
50444045 GACCGTAAAACCCCTGTAGGGTAAAGT
1 GACCGTAAAACCCCTGTAGGGTAAAGT
50444072 GACCGTAAAACCCCTGTAGGGTAAAGT
1 GACCGTAAAACCCCTGTAGGGTAAAGT
* * *
50444099 GACCGTAATACCCCTGTATGGTAAAAT
1 GACCGTAAAACCCCTGTAGGGTAAAGT
50444126 GAC
1 GAC
50444129 GAATATGCCC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
GACCGTAAAACCCCTGTAGGGTAAAGT
Found at i:50445399 original size:20 final size:20
Alignment explanation
Indices: 50445374--50445430 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
50445364 ATTTTGGTAA
50445374 ACATGGTATGTATGATATAC
1 ACATGGTATGTATGATATAC
* *
50445394 ACATGGCATGTATGATATGC
1 ACATGGTATGTATGATATAC
*
50445414 ACATGATATGTATGATA
1 ACATGGTATGTATGATA
50445431 CTCACATGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGGTATGTATGATATAC
Found at i:50445436 original size:20 final size:20
Alignment explanation
Indices: 50445374--50445440 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
50445364 ATTTTGGTAA
*
50445374 ACATGGTATGTATGATATAC
1 ACATGATATGTATGATATAC
** *
50445394 ACATGGCATGTATGATATGC
1 ACATGATATGTATGATATAC
50445414 ACATGATATGTATGATACT-C
1 ACATGATATGTATGATA-TAC
50445434 ACATGAT
1 ACATGAT
50445441 GTATTCATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 41 0.98
21 1 0.02
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATAC
Found at i:50445516 original size:24 final size:24
Alignment explanation
Indices: 50445489--50445733 Score: 321
Period size: 24 Copynumber: 10.0 Consensus size: 24
50445479 GGAGGAAGTG
50445489 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
50445513 TAAAAAGGGCTTACGCCCCAGTTAT
1 T-AAAAGGGCTTATGCCCCAGTTAT
* *
50445538 CAAAAGGGCTTATGCCTCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
50445562 CAAAAGGGCTTATGCCTCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
50445586 CAAAAGGGCTTATGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
50445610 TAAAAAAGGGCTTATGCCCCAGTTAT
1 T--AAAAGGGCTTATGCCCCAGTTAT
50445636 TAAATAGGGCTTATGCCCCAGTTAT
1 TAAA-AGGGCTTATGCCCCAGTTAT
* *
50445661 CAAAAGGGCTTATGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
50445685 TAAAAGGGCTTTTGCCCCAATTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
50445709 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
50445734 ATGATAAAGC
Statistics
Matches: 198, Mismatches: 17, Indels: 11
0.88 0.08 0.05
Matches are distributed among these distances:
24 120 0.61
25 55 0.28
26 23 0.12
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:50445714 original size:123 final size:124
Alignment explanation
Indices: 50445490--50445719 Score: 374
Period size: 123 Copynumber: 1.9 Consensus size: 124
50445480 GAGGAAGTGT
50445490 AAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCT
* *
50445555 CAGTTATCAAAAGGGCTTATGCCTCAGTTATCAAAAG-GGCTTATGCCCTAGTTATTAA
66 CAGTTATCAAAAGGGCTTATGCCCCAATTATCAAAAGAGGCTTATGCCCTAGTTATTAA
* *
50445613 AAAAGGGCTTATGCCCCAGTTATTAAATAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCT
* * *
50445677 CTAGTTATTAAAAGGGCTTTTGCCCCAATTATTAAAAGAGGCT
66 C-AGTTATCAAAAGGGCTTATGCCCCAATTATCAAAAGAGGCT
50445720 AGGCCTCCAG
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
122 1 0.01
123 93 0.95
124 4 0.04
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (124 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCT
CAGTTATCAAAAGGGCTTATGCCCCAATTATCAAAAGAGGCTTATGCCCTAGTTATTAA
Found at i:50448198 original size:27 final size:27
Alignment explanation
Indices: 50448159--50448239 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
50448149 TTAGAATACT
* *
50448159 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACTGAAATACCC
*
50448187 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACTGAAATACCC
*
50448214 -TCGATTTGTAAAATTACTGAAATACC
1 TTAG-TTTGTAAAATTACTGAAATACC
50448240 TTCGACTTGT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
26 2 0.04
27 38 0.81
28 7 0.15
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACTGAAATACCC
Found at i:50448244 original size:27 final size:27
Alignment explanation
Indices: 50448168--50448257 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
50448158 TTTAGTTTAC
* *
50448168 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
50448195 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
50448222 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
50448249 TAAGATTAC
1 TAAAATTAC
50448258 CAAAGTACCC
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
26 4 0.07
27 50 0.93
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:50448266 original size:27 final size:27
Alignment explanation
Indices: 50448192--50448271 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
50448182 TACCCTTAGT
* * *
50448192 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACTCAAATACCCTCGAC
* *
50448219 TTGTAAAATTACTGAAATACCTTCGAC
1 TTGTAAAATTACTCAAATACCCTCGAC
*
50448246 TTGTAAGATTAC-CAAAGTACCCTCGA
1 TTGTAAAATTACTCAAA-TACCCTCGA
50448272 ATTAGAGAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 3 0.07
27 43 0.93
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACTCAAATACCCTCGAC
Found at i:50448447 original size:27 final size:27
Alignment explanation
Indices: 50448263--50448447 Score: 203
Period size: 27 Copynumber: 6.9 Consensus size: 27
50448253 ATTACCAAAG
* * *
50448263 TACCCTCGAATTAGAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
50448290 TACGCC-CGATCTACATAATTACCGTTT
1 TAC-CCTCGATTTACAGAATTACTGTTT
* *
50448317 TA-CCTCCGATTTACATAATTACCGTTT
1 TACCCT-CGATTTACAGAATTACTGTTT
* *
50448344 TACCCTCGACTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
50448371 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
50448398 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50448425 TACCCTCGATTTAAAAAATTACT
1 TACCCTCGATTTACAGAATTACT
50448448 AAAATAACCT
Statistics
Matches: 135, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
25 2 0.01
27 128 0.95
28 5 0.04
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:50448562 original size:27 final size:27
Alignment explanation
Indices: 50448439--50448564 Score: 155
Period size: 27 Copynumber: 4.7 Consensus size: 27
50448429 CTCGATTTAA
* * *
50448439 AAAATTACTAAAATAACCTTAGTTTGT
1 AAAATTACCAAAATACCCTCAGTTTGT
50448466 AAAATTACCAAAATACTCCT-AGTTTGT
1 AAAATTACCAAAATAC-CCTCAGTTTGT
**
50448493 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTCAGTTTGT
* ** *
50448520 GAAATTACTGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTCAGTTTGT
50448547 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
50448565 CTGATTTACA
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.04
27 79 0.93
28 3 0.04
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCAGTTTGT
Found at i:50448562 original size:54 final size:54
Alignment explanation
Indices: 50448425--50448564 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
50448415 ATTACTGTTT
* ** * *
50448425 TACCCTCGATTTAAAAAATTACTAAAATAACCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * **
50448479 TACTCCT-AGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACTGAAA
1 TAC-CCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
50448533 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
50448565 CTGATTTACA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 3 0.04
54 67 0.92
55 3 0.04
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:50448587 original size:54 final size:54
Alignment explanation
Indices: 50448467--50448592 Score: 150
Period size: 54 Copynumber: 2.3 Consensus size: 54
50448457 TTAGTTTGTA
* * * **
50448467 AAATTACCA-AAATACTCCT-AGTTTGTAAAATTACCAAAATACCCTTGGTTTGTG
1 AAATTA-CAGAAATAC-CCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGAC
*
50448521 AAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTT-AC
1 AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGAC
50448574 AAAGTTACAGAAATACCCT
1 AAA-TTACAGAAATACCCT
50448593 TGACTTTCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
53 7 0.11
54 55 0.89
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGAC
Found at i:50448588 original size:81 final size:81
Alignment explanation
Indices: 50448440--50448594 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 81
50448430 TCGATTTAAA
* * * *
50448440 AAATTACTAAAATAACCTTAGTTTGTAAAATTACCAAAATACTCCTAGTTTGTAAAATTACCAAA
1 AAATTACTAAAATAACCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
50448505 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
* *
50448521 AAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-CA
1 AAATTACTAAAATAACCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTACCA
50448583 GAAATACCCTTG
64 -AAATACCCTTG
50448595 ACTTTCTAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 2 0.03
80 8 0.12
81 55 0.85
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTACTAAAATAACCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
ATACCCTTGGTTTGTG
Found at i:50450075 original size:11 final size:11
Alignment explanation
Indices: 50450039--50450094 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
50450029 CATGGTATGT
50450039 ATGATATGCAC
1 ATGATATGCAC
* *
50450050 ATGACATG--T
1 ATGATATGCAC
50450059 ATGATATGCAC
1 ATGATATGCAC
*
50450070 ATGATATG--T
1 ATGATATGCAC
50450079 ATGATATGCAC
1 ATGATATGCAC
50450090 ATGAT
1 ATGAT
50450095 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:50450094 original size:20 final size:20
Alignment explanation
Indices: 50450028--50450094 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
50450018 ATTTTGATAA
*
50450028 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
50450048 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
50450068 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
50450088 ACATGAT
1 ACATGAT
50450095 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:50450168 original size:25 final size:25
Alignment explanation
Indices: 50450140--50450413 Score: 360
Period size: 24 Copynumber: 11.1 Consensus size: 25
50450130 GATGAAGTGT
* *
50450140 AAAATGGCTTATGCCCCAGTAATTA
1 AAAAGGGCTTATGCCCCAGTTATTA
* * *
50450165 AAAAGGGCTTACGCCCTAATTATT-
1 AAAAGGGCTTATGCCCCAGTTATTA
*
50450189 AAAAGGGCTTATGCCCCAGTTA-TC
1 AAAAGGGCTTATGCCCCAGTTATTA
* *
50450213 AAAAGGGCTTATGCCTCAGTTA-TC
1 AAAAGGGCTTATGCCCCAGTTATTA
50450237 AAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTA
* *
50450262 AAAAGGGCTTACGCCCCAATTATTA
1 AAAAGGGCTTATGCCCCAGTTATTA
*
50450287 AAAAGGGCTTATGCCCCAATTATTAA
1 AAAAGGGCTTATGCCCCAGTTATT-A
50450313 AAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTA
* * *
50450338 AAAAAGGCTTATACCCCAGTTA-TC
1 AAAAGGGCTTATGCCCCAGTTATTA
* *
50450362 AAAAGGGCTTATGCCCCAATTA-TG
1 AAAAGGGCTTATGCCCCAGTTATTA
50450386 AAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTA
50450411 AAA
1 AAA
50450414 GAGGCTAGGC
Statistics
Matches: 221, Mismatches: 24, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
23 1 0.00
24 105 0.48
25 91 0.41
26 24 0.11
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTATGCCCCAGTTATTA
Found at i:50450430 original size:73 final size:74
Alignment explanation
Indices: 50450140--50450432 Score: 371
Period size: 73 Copynumber: 4.0 Consensus size: 74
50450130 GATGAAGTGT
* * * * * *
50450140 AAAATGGCTTATGCCCCAGTAATTAAAAAGGGCTTACGCCCTAATTATTAAAAG-GGCTTATGCC
1 AAAAGGGCTTATGCCCCAATTATTAAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTTATGCC
50450204 CCAGTTATC
66 CCAGTTATC
* * * *
50450213 AAAAGGGCTTATGCCTCAGTTA-TCAAAAGGGCTTATGCCCCAGTTATTAAAA-AGGGCTTACGC
1 AAAAGGGCTTATGCCCCAATTATTAAAAAGGGCTTATGCCCCAGTTATTAAAAGA-GGCTTATGC
* *
50450276 CCCAATTATTA
65 CCCAGTTA-TC
* *
50450287 AAAAGGGCTTATGCCCCAATTATTAAAAAAGGGCTTATGCCCCAGTTATTAAAAAAGGCTTATAC
1 AAAAGGGCTTATGCCCCAATTATT-AAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTTATGC
50450352 CCCAGTTATC
65 CCCAGTTATC
* *
50450362 AAAAGGGCTTATGCCCCAATTA-TGAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCC
1 AAAAGGGCTTATGCCCCAATTATTAAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTTATGCC
50450425 TCCAGTTA
66 -CCAGTTA
50450433 CATGACAAAG
Statistics
Matches: 192, Mismatches: 21, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
72 30 0.16
73 73 0.38
74 22 0.11
75 24 0.12
76 42 0.22
77 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (74 bp):
AAAAGGGCTTATGCCCCAATTATTAAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTTATGCC
CCAGTTATC
Found at i:50452824 original size:40 final size:40
Alignment explanation
Indices: 50452779--50452908 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
50452769 CGGAATATAA
50452779 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
50452819 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
50452859 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
50452899 CCGGATATAA
1 CCGGATATAA
50452909 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:50452923 original size:40 final size:39
Alignment explanation
Indices: 50452795--50452945 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
50452785 ATAACCATGT
* * *
50452795 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
50452835 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
50452875 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
50452914 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
50452946 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:50452929 original size:80 final size:79
Alignment explanation
Indices: 50452779--50452945 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
50452769 CGGAATATAA
*
50452779 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
50452844 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
50452859 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
50452921 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
50452938 CCGGATAT
1 CCGGATAT
50452946 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:50457548 original size:40 final size:39
Alignment explanation
Indices: 50457383--50457566 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
50457373 AAATTGAATG
* * *
50457383 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
50457423 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
50457463 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
50457503 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
50457542 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
50457567 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:50457591 original size:80 final size:81
Alignment explanation
Indices: 50457423--50457611 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
50457413 GCTGGAAATT
* * * *
50457423 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
50457488 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
50457504 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
50457567 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
50457583 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
50457612 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:50465666 original size:40 final size:39
Alignment explanation
Indices: 50465501--50465684 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
50465491 AAATTGAATG
* * *
50465501 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
50465541 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
50465581 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
50465621 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
50465660 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
50465685 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:50465709 original size:80 final size:81
Alignment explanation
Indices: 50465541--50465729 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
50465531 GCTGGAAATT
* * * *
50465541 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
50465606 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
50465622 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
50465685 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
50465701 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
50465730 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:50469633 original size:42 final size:41
Alignment explanation
Indices: 50469526--50469645 Score: 120
Period size: 43 Copynumber: 2.9 Consensus size: 41
50469516 GTCTATGACA
50469526 TCGTGTAAGA-CAGTGTCTGGGACATAGGCCTCGATTGAGATT
1 TCGTGTAAGACCA-TGTCTGGGACATAGGCCTCGATT-AGATT
* *
50469568 TACGTATAAGACCATGTCTGGGACATTGGCAC-CGTATCT-GATT
1 T-CGTGTAAGACCATGTCTGGGACATAGGC-CTCG-AT-TAGATT
* * *
50469611 TCGTGTAAGACCCTGTCTGGGACAAAGGCATCGAT
1 TCGTGTAAGACCATGTCTGGGACATAGGCCTCGAT
50469646 ATTGAATTAC
Statistics
Matches: 65, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
41 2 0.03
42 27 0.42
43 30 0.46
44 5 0.08
45 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACATAGGCCTCGATTAGATT
Found at i:50477376 original size:24 final size:24
Alignment explanation
Indices: 50477349--50477405 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
50477339 TCCTAAAAAT
50477349 AGTCTAAGA-ACAAAAATAAAGTAA
1 AGTC-AAGATACAAAAATAAAGTAA
50477373 AGTCAAGATACAAAAATAAAGTAA
1 AGTCAAGATACAAAAATAAAGTAA
50477397 AGTCAAGAT
1 AGTCAAGAT
50477406 CCCCCTTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 4 0.12
24 28 0.88
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.18
Consensus pattern (24 bp):
AGTCAAGATACAAAAATAAAGTAA
Found at i:50484957 original size:18 final size:21
Alignment explanation
Indices: 50484922--50484962 Score: 61
Period size: 18 Copynumber: 2.1 Consensus size: 21
50484912 TTCGTATTTC
50484922 ATCATTATTACTAGTATTAGT
1 ATCATTATTACTAGTATTAGT
50484943 ATCATTATT-C-A-TATTAGT
1 ATCATTATTACTAGTATTAGT
50484961 AT
1 AT
50484963 ATATATGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 9 0.45
19 1 0.05
20 1 0.05
21 9 0.45
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (21 bp):
ATCATTATTACTAGTATTAGT
Found at i:50484979 original size:14 final size:14
Alignment explanation
Indices: 50484953--50484987 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
50484943 ATCATTATTC
*
50484953 ATATTAGTATATAT
1 ATATTATTATATAT
*
50484967 ATGTTATTATATAT
1 ATATTATTATATAT
50484981 ATATTAT
1 ATATTAT
50484988 ATAGTATTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (14 bp):
ATATTATTATATAT
Found at i:50495088 original size:27 final size:27
Alignment explanation
Indices: 50495058--50495333 Score: 304
Period size: 27 Copynumber: 10.3 Consensus size: 27
50495048 TTAGTTTACC
*
50495058 AAATTAACAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * ** *
50495085 AAATTACTAGAATACCATTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50495112 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
50495139 AAATTACCAAAATACTCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50495166 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
50495193 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50495220 AAATCACC-AAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50495246 AAATTACCAAAATA-CCCTCGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
50495272 AAATTATCAAAATACCGCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
50495299 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50495326 GAATTACC
1 AAATTACC
50495334 GTTTTACCCT
Statistics
Matches: 203, Mismatches: 44, Indels: 4
0.81 0.18 0.02
Matches are distributed among these distances:
26 46 0.23
27 157 0.77
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:50495258 original size:53 final size:54
Alignment explanation
Indices: 50495065--50495325 Score: 355
Period size: 54 Copynumber: 4.9 Consensus size: 54
50495055 ACCAAATTAA
* * *
50495065 CAAAATACCCCTGGTTTGTAAAATTACTAGAATACCATTGGTTTATAAAATCAC
1 CAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCAC
* * *
50495119 CAAAATACCCCTGGTTTGTAAAATTACCAAAATACTCTTGGTTTACAAAATTAC
1 CAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCAC
* * *
50495173 CAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATCAC
1 CAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCAC
* * * *
50495227 C-AAATACCCCTGGTTTGTAAAATTACCAAAATACCC-TCGTTTGTAAAATTAT
1 CAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCAC
* * * *
50495279 CAAAATACCGCTAGTTTGTAAAATTACCAAAGTACCCTTGATTTATA
1 CAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
50495326 GAATTACCGT
Statistics
Matches: 181, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
52 13 0.07
53 65 0.36
54 103 0.57
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
CAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCAC
Found at i:50495391 original size:27 final size:27
Alignment explanation
Indices: 50495361--50495665 Score: 371
Period size: 27 Copynumber: 11.3 Consensus size: 27
50495351 CAAAATTATC
* * * *
50495361 GAAATACCCTTATATGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
50495388 GAAATACCCCTGTAGGATAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
50495415 GAAATACCCCTGTAGGGTAGAATTA-T
1 GAAATACCCCTGTAGGGTAGAATTACT
*
50495441 CGCAATACCCCTGTAGGGTAGAATTACT
1 -GAAATACCCCTGTAGGGTAGAATTACT
* *
50495469 GGAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
*
50495496 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
50495523 GAAATACCTCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
50495550 GAAAGACCCTTGTAGGGTAGAATTA-T
1 GAAATACCCCTGTAGGGTAGAATTACT
*
50495576 CGCAATACCCCTGTAGGGTAGAATTACT
1 -GAAATACCCCTGTAGGGTAGAATTACT
* * *
50495604 GAAATAACCCTGTAGGATAGAATCACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
50495631 AAAATACCCATGTAGGGTGGAATTACA
1 GAAATACCCCTGTAGGGTAGAATTACT
*
50495658 GAGATACC
1 GAAATACC
50495666 TTATGGGGTA
Statistics
Matches: 241, Mismatches: 33, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
27 239 0.99
28 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:50496143 original size:22 final size:23
Alignment explanation
Indices: 50496110--50496174 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 23
50496100 TTAAAGCCTT
*
50496110 CTGATTATGGCTTC-GTGTCAAC
1 CTGATTATGGCTTCTGTGCCAAC
50496132 CT-ATATATGGC-TCTGTGCCAAC
1 CTGAT-TATGGCTTCTGTGCCAAC
*
50496154 CTGATTATGGC-TGTGTGCCAA
1 CTGATTATGGCTTCTGTGCCAA
50496175 ACGTATTTGC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.11
22 32 0.84
23 2 0.05
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (23 bp):
CTGATTATGGCTTCTGTGCCAAC
Found at i:50496412 original size:27 final size:27
Alignment explanation
Indices: 50496332--50496428 Score: 72
Period size: 27 Copynumber: 3.6 Consensus size: 27
50496322 ATTCTGTTAA
* * * * *
50496332 GTGGCTTTGCTACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTATATCTG
* *
50496359 GTGGCTATGCCACAA-ATATA-AGTTCTG
1 GTGGCTCTGCCACAATATCTATA--TCTG
50496386 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTCTGCCACAATATCTATATCTG
* * *
50496413 ATGACTCTGTCACAAT
1 GTGGCTCTGCCACAAT
50496429 GTCTGATAAC
Statistics
Matches: 55, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
26 3 0.05
27 47 0.85
28 4 0.07
29 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTATATCTG
Found at i:50496608 original size:6 final size:6
Alignment explanation
Indices: 50496570--50496689 Score: 61
Period size: 6 Copynumber: 19.3 Consensus size: 6
50496560 TTGCATTCAC
* * *
50496570 ATTCTG ATTTTAG ATTCTG -TTACTTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCT-G ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
50496620 -TTACCTG ATAT-TG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTA ATTCTA
1 ATT--CTG AT-TCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
50496670 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
50496690 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 12, Indels: 28
0.69 0.09 0.22
Matches are distributed among these distances:
5 7 0.08
6 63 0.72
7 14 0.16
8 3 0.03
9 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:50496620 original size:31 final size:32
Alignment explanation
Indices: 50496570--50496641 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 32
50496560 TTGCATTCAC
*
50496570 ATTCTGATTTTAGATTCTGTTACTTGATACTG
1 ATTCTGATTTTAGATTCTGTTACCTGATACTG
*
50496602 ATTCTGATTTT-GATTCTGTTACCTGATATTG
1 ATTCTGATTTTAGATTCTGTTACCTGATACTG
50496633 ATTCTGATT
1 ATTCTGATT
50496642 CTGTCACCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 27 0.71
32 11 0.29
ACGTcount: A:0.21, C:0.12, G:0.15, T:0.51
Consensus pattern (32 bp):
ATTCTGATTTTAGATTCTGTTACCTGATACTG
Found at i:50496627 original size:25 final size:25
Alignment explanation
Indices: 50496599--50496668 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
50496589 TTACTTGATA
* *
50496599 CTGATTCTGATTTTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTCAC
50496624 CTGATAT-TGATTCTGATTCTGTCAC
1 CTGAT-TCTGATTCTGATTCTGTCAC
* *
50496649 CTAATTCTGATTCTAATTCT
1 CTGATTCTGATTCTGATTCT
50496669 AATTCTGATT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 37 0.95
26 1 0.03
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.49
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:50498378 original size:48 final size:48
Alignment explanation
Indices: 50498318--50498423 Score: 160
Period size: 48 Copynumber: 2.2 Consensus size: 48
50498308 CGGCCACAAT
* *
50498318 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCT-TTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGG-TGTTACCAC
50498366 ATATACATATCTCATACATATTTCACACTAGCCATTCGGTGTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGTGTTACCAC
* *
50498414 ACATATATAT
1 ATATACATAT
50498424 ATTTATCTTG
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 1 0.02
48 52 0.98
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.34
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGGTGTTACCAC
Found at i:50501203 original size:43 final size:43
Alignment explanation
Indices: 50501142--50501277 Score: 236
Period size: 43 Copynumber: 3.2 Consensus size: 43
50501132 CCTTGCTCGA
** *
50501142 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
50501185 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
50501228 ATCACCGGTACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
50501271 ATCACCG
1 ATCACCG
50501278 AGTTTCATGC
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 89 1.00
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:50503016 original size:37 final size:37
Alignment explanation
Indices: 50502966--50503037 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
50502956 TTTAGCTCGA
*
50502966 ATAATCCCCACACGTAGTCATCGGGTCTTACCCGGGC
1 ATAATCCCCACACGTAGCCATCGGGTCTTACCCGGGC
*
50503003 ATAATCTCCACACGTAGCCATCGGGTCTTACCCGG
1 ATAATCCCCACACGTAGCCATCGGGTCTTACCCGG
50503038 AATATATTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.35, G:0.21, T:0.22
Consensus pattern (37 bp):
ATAATCCCCACACGTAGCCATCGGGTCTTACCCGGGC
Found at i:50503229 original size:48 final size:48
Alignment explanation
Indices: 50503169--50503274 Score: 167
Period size: 48 Copynumber: 2.2 Consensus size: 48
50503159 CGGCCACAAT
* *
50503169 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
*
50503217 ATATACATATCTCATACATATTTCATACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
50503265 ACATATATAT
1 ATATACATAT
50503275 ATTTATCTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.33, C:0.26, G:0.06, T:0.35
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:50514841 original size:48 final size:48
Alignment explanation
Indices: 50514786--50515051 Score: 256
Period size: 48 Copynumber: 5.6 Consensus size: 48
50514776 TAAGGTACCA
* *
50514786 ATGCCATGTCCCCA-ACATGGTCTTACATGAATC-CAAATATCATCGCCG
1 ATGCCATGT-CCCAGACATGGTCTTACAT-AATCACATATATCATCGCTG
* * * *
50514834 ATGCCATGTCCCAAACATGGTCTT--ATATTGCATACATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACATAAT-CACATATATCATCGCTG
* * * * *
50514881 ATGTCATGTCCTAGACATGGTCTTACA-AAGGCACATATATCATTGCTA
1 ATGCCATGTCCCAGACATGGTCTTACATAA-TCACATATATCATCGCTG
* *
50514929 ATGCCATGTCCCAAACATGGTCTTACA-CATGCACATATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACATAAT-CACATATATCATCGCTG
* * ** * **
50514977 ATGCCATCTCCCATACATGGTCTTACATAGGCACATATATCATTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATAATCACATATATCATCGCTG
*
50515025 ATGTCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
50515052 CAGAATCTCA
Statistics
Matches: 179, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
45 2 0.01
46 3 0.02
47 37 0.21
48 136 0.76
49 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATAATCACATATATCATCGCTG
Found at i:50515009 original size:96 final size:95
Alignment explanation
Indices: 50514786--50515053 Score: 342
Period size: 96 Copynumber: 2.8 Consensus size: 95
50514776 TAAGGTACCA
** * * *
50514786 ATGCCATGTCCCCAACATGGTCTTACATGAATC-CAAATATCATCGCCGATGCCATGTCCCAAAC
1 ATGCCATGT-CCCAACATGGTCTTACAT-AGGCACATATATCATTGCCAATGCCATGTCCCAAAC
* * *
50514850 ATGGTCTTATA-TTGCATACATATCATCGCTG
64 ATGGTCTTACACATGCACACATATCATCGCTG
* * * *
50514881 ATGTCATGTCCTAGACATGGTCTTACAAAGGCACATATATCATTGCTAATGCCATGTCCCAAACA
1 ATGCCATGTCCCA-ACATGGTCTTACATAGGCACATATATCATTGCCAATGCCATGTCCCAAACA
*
50514946 TGGTCTTACACATGCACATATATCATCGCTG
65 TGGTCTTACACATGCACACATATCATCGCTG
* * *
50514977 ATGCCATCTCCCATACATGGTCTTACATAGGCACATATATCATTGCCAATGTCATGTCCCAGACA
1 ATGCCATGTCCCA-ACATGGTCTTACATAGGCACATATATCATTGCCAATGCCATGTCCCAAACA
50515042 TGGTCTTACACA
65 TGGTCTTACACA
50515054 GAATCTCATT
Statistics
Matches: 149, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
94 5 0.03
95 58 0.39
96 86 0.58
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (95 bp):
ATGCCATGTCCCAACATGGTCTTACATAGGCACATATATCATTGCCAATGCCATGTCCCAAACAT
GGTCTTACACATGCACACATATCATCGCTG
Found at i:50516597 original size:22 final size:23
Alignment explanation
Indices: 50516554--50516597 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
50516544 TACCAATCAA
* *
50516554 ATCACAACATATAGCATACATTT
1 ATCACAACATAAAACATACATTT
*
50516577 ATCA-AACATAAAACATTCATT
1 ATCACAACATAAAACATACATT
50516598 CTCATAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.30
Consensus pattern (23 bp):
ATCACAACATAAAACATACATTT
Found at i:50516932 original size:66 final size:65
Alignment explanation
Indices: 50516851--50516990 Score: 165
Period size: 66 Copynumber: 2.1 Consensus size: 65
50516841 CTGAAGACAC
* *
50516851 GCCCGTGTGCCAGGCCATATGAAAATTGGAGG-GTATACTGACTTATTCAACACGGCCAAGTCAC
1 GCCCGTGTGCCAGGCCATATGAAAATT-AAGGTGTATACTGACTTATACAACACGGCC-AGTCAC
50516915 AT
64 AT
* * * * ** * *
50516917 GTCCGTGTGCTAGGCCGTGTGCCAATTAAGGTGTATACTGACTTGTACCACACGGCCAGTCACAT
1 GCCCGTGTGCCAGGCCATATGAAAATTAAGGTGTATACTGACTTATACAACACGGCCAGTCACAT
50516982 GCCCGTGTG
1 GCCCGTGTG
50516991 TGAGACTGAG
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
65 19 0.31
66 43 0.69
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (65 bp):
GCCCGTGTGCCAGGCCATATGAAAATTAAGGTGTATACTGACTTATACAACACGGCCAGTCACAT
Found at i:50520272 original size:16 final size:16
Alignment explanation
Indices: 50520251--50520286 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
50520241 TTCATATCCT
*
50520251 GAAATGCCGAAAAGCC
1 GAAATGCCAAAAAGCC
50520267 GAAATGCCAAAAAGCC
1 GAAATGCCAAAAAGCC
50520283 GAAA
1 GAAA
50520287 GTTTGGCTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.50, C:0.22, G:0.22, T:0.06
Consensus pattern (16 bp):
GAAATGCCAAAAAGCC
Found at i:50520542 original size:28 final size:28
Alignment explanation
Indices: 50520502--50520622 Score: 145
Period size: 28 Copynumber: 4.3 Consensus size: 28
50520492 TTACATGACC
*
50520502 ATGAATGTGATTGGGGCTGATGGGTCAT
1 ATGAATGTGATTGGGGCTGATGGGCCAT
* *
50520530 ATGAATGTGATTGGGGCCGAAGGGCCAT
1 ATGAATGTGATTGGGGCTGATGGGCCAT
* *
50520558 ATGAATGTGATTTGGGCCTAATGGGCCAT
1 ATGAATGTGA-TTGGGGCTGATGGGCCAT
* *
50520587 ATGAATGAGATTGGGTCT-AGTGGGCCAT
1 ATGAATGTGATTGGGGCTGA-TGGGCCAT
*
50520615 ATGCATGT
1 ATGAATGT
50520623 ATGTAGACTT
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
27 1 0.01
28 56 0.70
29 23 0.29
ACGTcount: A:0.24, C:0.12, G:0.36, T:0.29
Consensus pattern (28 bp):
ATGAATGTGATTGGGGCTGATGGGCCAT
Found at i:50523079 original size:40 final size:40
Alignment explanation
Indices: 50522983--50523080 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
50522973 CCCGGATTCT
****
50522983 ATTCCAGCACGAAGCCTGCAGGTCTTTAAACTTGGATACA
1 ATTCCAGCACGAAGCCTGCAGGTCTTTAAACCCAAATACA
* *
50523023 ATTCCAGCA-TATAGCCTGC-GAGTCTTTAAACCCAAATACC
1 ATTCCAGCACGA-AGCCTGCAG-GTCTTTAAACCCAAATACA
50523063 ATTCCAGCACGAAGCCTG
1 ATTCCAGCACGAAGCCTG
50523081 TGGATCTTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
39 2 0.04
40 45 0.94
41 1 0.02
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (40 bp):
ATTCCAGCACGAAGCCTGCAGGTCTTTAAACCCAAATACA
Found at i:50523089 original size:40 final size:39
Alignment explanation
Indices: 50522983--50523091 Score: 96
Period size: 40 Copynumber: 2.7 Consensus size: 39
50522973 CCCGGATTCT
****
50522983 ATTCCAGCACGAAGCCTGCAGG-TCTTTAAACTTGGATACA
1 ATTCCAGCACGAAGCCTG--GGATCTTTAAACCCAAATACA
* * *
50523023 ATTCCAGCA-TATAGCCTGCGAGTCTTTAAACCCAAATACC
1 ATTCCAGCACGA-AGCCTGGGA-TCTTTAAACCCAAATACA
50523063 ATTCCAGCACGAAGCCTGTGGATCTTTAA
1 ATTCCAGCACGAAGCCTG-GGATCTTTAA
50523092 GCCCGGATAC
Statistics
Matches: 55, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
38 1 0.02
39 1 0.02
40 50 0.91
41 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (39 bp):
ATTCCAGCACGAAGCCTGGGATCTTTAAACCCAAATACA
Found at i:50530760 original size:40 final size:39
Alignment explanation
Indices: 50530664--50530819 Score: 197
Period size: 40 Copynumber: 4.0 Consensus size: 39
50530654 CGAAACACAT
* * * * * *
50530664 TTCTAACACGAGCCTACAGGTCTTT-AACCCGGATTCTA
1 TTCTAGCACAAGCCTGCGGGTCTTTAAACCCGGATACAA
*
50530702 TTCCAGCACAAGCCTGCGGGTCTTTAAACCCGGATACAA
1 TTCTAGCACAAGCCTGCGGGTCTTTAAACCCGGATACAA
* *
50530741 TTCTAGCATATAGCCTGCGGGTCTTTAAACCCGGATACCA
1 TTCTAGCACA-AGCCTGCGGGTCTTTAAACCCGGATACAA
*
50530781 TTCTAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 TTCTAGCAC-AAGCCTGCGGGTCTTTAAACCCGGATACA
50530820 CACATCAAAT
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 20 0.20
39 19 0.19
40 62 0.61
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (39 bp):
TTCTAGCACAAGCCTGCGGGTCTTTAAACCCGGATACAA
Found at i:50533279 original size:108 final size:108
Alignment explanation
Indices: 50533083--50533281 Score: 301
Period size: 108 Copynumber: 1.8 Consensus size: 108
50533073 ACGGTATGGG
* *
50533083 AAATCGAGGGTCAATTTCAGAGCGACTTCGATCAAATGAGGTCGATATCTTTATGGGCGTAGTTG
1 AAATCGAGGGTCAATTTCAGAGCGACTTCGATCAAATGAGGCCGATATCTTTATGGGCGTAGCTG
50533148 GTGTGGCTCCTTGTAACAACCCTTACACGTTTTTCTAAGCCAA
66 GTGTGGCTCCTTGTAACAACCCTTACACGTTTTTCTAAGCCAA
* * * *
50533191 AAATTGAGGGTCAA-TTCTGGAGTGACTTCGATCAAATGAGGCCGATATCTTTTTGGGCGTAGCT
1 AAATCGAGGGTCAATTTC-AGAGCGACTTCGATCAAATGAGGCCGATATCTTTATGGGCGTAGCT
* * *
50533255 GGTGTGGCTCTTTGTAGCACCCCTTAC
65 GGTGTGGCTCCTTGTAACAACCCTTAC
50533282 CCTCGACGTT
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
107 3 0.04
108 78 0.96
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (108 bp):
AAATCGAGGGTCAATTTCAGAGCGACTTCGATCAAATGAGGCCGATATCTTTATGGGCGTAGCTG
GTGTGGCTCCTTGTAACAACCCTTACACGTTTTTCTAAGCCAA
Found at i:50539142 original size:40 final size:40
Alignment explanation
Indices: 50538980--50539181 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
50538970 CGAATGATGT
*
50538980 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
50539020 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
50539059 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
50539097 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
50539138 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
50539178 CCGG
1 CCGG
50539182 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:50539144 original size:78 final size:79
Alignment explanation
Indices: 50538979--50539130 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
50538969 TCGAATGATG
* * *
50538979 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
50539044 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
50539059 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
50539122 GTGCAAGTC
65 GTGCAAGTC
50539131 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:50545507 original size:27 final size:28
Alignment explanation
Indices: 50545477--50545578 Score: 104
Period size: 27 Copynumber: 3.7 Consensus size: 28
50545467 TTTAGTTTAC
50545477 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
50545504 TAAAAAATACTGAAATACCC-TCGATTTG
1 T-AAAATTACCGAAATACCCTTAGATTTG
* * *
50545532 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
50545559 TAAAATTACC-AAAGTACCCT
1 TAAAATTACCGAAA-TACCCT
50545579 CATTTACAGA
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
26 5 0.08
27 33 0.53
28 24 0.39
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:50545774 original size:131 final size:132
Alignment explanation
Indices: 50545573--50545857 Score: 373
Period size: 131 Copynumber: 2.2 Consensus size: 132
50545563 ATTACCAAAG
* *
50545573 TACCCTC-ATTTACAGAATTACCGTTTTACCCCTATTACATAATTACGTTTTACCCCTGATTTAC
1 TACCCTCGATTTACAGAATTACTGTTTTACCCCTATTACAGAATTACGTTTTACCCCTGATTTAC
* * *
50545637 ATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACTGAATTACTGT
66 ATAATTATCGTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTAT
50545702 TT
131 TT
* * * *
50545704 TACCCTTGATTTATAGAATTACTGTTTTACCCTTGATT-TAGAATTACTGTTTTA-CCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCCT-ATTACAGAATTAC-GTTTTACCCCT-GATT
* * * * *
50545767 T-CA-AATTATCGTTTTACCGTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTAC
63 TACATAATTATCGTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAGAATTAC
50545830 TATTT
128 TATTT
*
50545835 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
50545858 AAAATACCCT
Statistics
Matches: 133, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
131 83 0.62
132 36 0.27
133 14 0.11
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (132 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCCTATTACAGAATTACGTTTTACCCCTGATTTAC
ATAATTATCGTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTAT
TT
Found at i:50545793 original size:104 final size:106
Alignment explanation
Indices: 50545573--50545847 Score: 341
Period size: 104 Copynumber: 2.6 Consensus size: 106
50545563 ATTACCAAAG
* * * * *
50545573 TACCCTC-ATTTACAGAATTACCGTTTTACCCCT-A-TTACATAATTAC-GTTTTACCCCTGATT
1 TACCCTCGATTTACTGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTTGATT
*
50545634 TACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTT
66 T--AGAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTT
*
50545677 TACCCTCGATTTACTGAATTACTGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACTGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTTGATT
* *
50545742 TAGAATTA-CTGTTTTACCCTCGA-TTTCA-AATTATCGTTT
66 TAGAATTATC-GTTTTACCCTCGACTTACAGAATTACCGTTT
* * * *
50545781 TACCGTCGATTTA-TAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTACT-GAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTTGAT
50545845 TTA
65 TTA
50545848 CAAAATTACT
Statistics
Matches: 151, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
103 1 0.01
104 77 0.51
105 28 0.19
106 20 0.13
107 10 0.07
108 15 0.10
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (106 bp):
TACCCTCGATTTACTGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTTGATT
TAGAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTT
Found at i:50545858 original size:27 final size:27
Alignment explanation
Indices: 50545573--50545857 Score: 322
Period size: 27 Copynumber: 10.9 Consensus size: 27
50545563 ATTACCAAAG
*
50545573 TACCCTC-ATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50545599 TACCC-CTA-TTACATAATTAC-GTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
50545623 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* *
50545650 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
50545677 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50545704 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
50545731 TACCCTTGATTT--AGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
50545756 TACCCTCGATTT-CA-AATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
50545781 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50545808 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
50545835 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
50545858 AAAATACCCT
Statistics
Matches: 227, Mismatches: 20, Indels: 23
0.84 0.07 0.09
Matches are distributed among these distances:
24 11 0.05
25 57 0.25
26 19 0.08
27 138 0.61
28 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:50545865 original size:27 final size:27
Alignment explanation
Indices: 50545808--50546052 Score: 144
Period size: 27 Copynumber: 9.1 Consensus size: 27
50545798 ATTACTATTT
* ***
50545808 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
50545835 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** *
50545862 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** *
50545889 TACCCTAG-TTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* * **
50545915 TA-CCTTGGTTGT--GAAATTACCGAAA
1 TACCCTTGATT-TACAAAATTACTAAAA
** ** *
50545940 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *
50545967 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
50545994 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
50546023 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
50546050 TAC
1 TAC
50546053 TTTTGGTTTG
Statistics
Matches: 176, Mismatches: 30, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
25 18 0.10
26 28 0.16
27 104 0.59
28 7 0.04
29 19 0.11
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:50545882 original size:54 final size:54
Alignment explanation
Indices: 50545769--50545971 Score: 144
Period size: 54 Copynumber: 3.8 Consensus size: 54
50545759 CCTCGATTTC
* * * * *** * **
50545769 AAATTATCGTTTTACCGTCGATTTATAGAATTACTATTTTACCCTTGATTTACA
1 AAATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTA
* * *
50545823 GAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTA
1 AAATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTA
*** * * * *
50545877 AAATTACCAAAATACCCTAG-TTTGTAAAATTACCAAAATA-CCTTGG-TTGTG
1 AAATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTA
** * * *
50545928 AAATTACCGA-AATACCCTCAATTTGTAAAATTACCAAAATACCC
1 AAATTACC-ATTTTACCCTCGATTTATAAAATTACTAAAATACCC
50545972 CTGATTTACA
Statistics
Matches: 121, Mismatches: 25, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
51 20 0.17
52 27 0.22
53 19 0.16
54 55 0.45
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.35
Consensus pattern (54 bp):
AAATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTA
Done.