Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 174 of 378
Found at i:50545893 original size:158 final size:158
Alignment explanation
Indices: 50545519--50545894 Score: 359
Period size: 158 Copynumber: 2.4 Consensus size: 158
50545509 AATACTGAAA
** * ** * *
50545519 TACCCTCGATTTGTAAATTTACCGAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCC-TCAT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTT-GATTTGTAAAATTACCAAAATACCCTTCAT
* * *
50545582 TTACAGAATTACCGTTTTACCCCTATTACATAATTACGTTTTACCCCTGATTTACATAATTATCG
65 TTA-AGAATTACCGTTTTACCCCGATTACATAATTACGTTTTACCCCTGATTTACAGAATTATCA
*
50545647 TTTTACCCTCGACTTACAGAATTACCGTTT
129 TTTTACCCTCGACTTACAGAATTACCATTT
** **** * * ***** *
50545677 TACCCTCGATTTACTGAATTACTGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTTCATT
* * * *
50545742 T-AGAATTACTGTTTTACCCTCGATTTCA-AATTATCGTTTTA-CCGTCGATTTATAGAATTA-C
66 TAAGAATTACCGTTTTACCC-CGATTACATAATTA-CGTTTTACCCCT-GATTTACAGAATTATC
* * *
50545803 TATTTTACCCTTGATTTACAGAATTACTATTT
128 -ATTTTACCCTCGACTTACAGAATTACCATTT
*
50545835 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCT
50545895 AGTTTGTAAA
Statistics
Matches: 169, Mismatches: 43, Indels: 12
0.75 0.19 0.05
Matches are distributed among these distances:
157 26 0.15
158 134 0.79
159 9 0.05
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.40
Consensus pattern (158 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTTCATT
TAAGAATTACCGTTTTACCCCGATTACATAATTACGTTTTACCCCTGATTTACAGAATTATCATT
TTACCCTCGACTTACAGAATTACCATTT
Found at i:50545906 original size:26 final size:26
Alignment explanation
Indices: 50545849--50545971 Score: 158
Period size: 27 Copynumber: 4.7 Consensus size: 26
50545839 CTCGATTTAC
* *
50545849 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCC-TAGTTTGT
50545876 AAAATTACCAAAATACCCTAGTTTGT
1 AAAATTACCAAAATACCCTAGTTTGT
* *
50545902 AAAATTACCAAAATA-CCTTGGTTGT
1 AAAATTACCAAAATACCCTAGTTTGT
* * *
50545927 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCT-AGTTTGT
50545954 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
50545972 CTGATTTACA
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
25 21 0.25
26 25 0.30
27 37 0.45
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAGTTTGT
Found at i:50546058 original size:27 final size:27
Alignment explanation
Indices: 50546010--50546061 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
50546000 TGACTTTCTA
50546010 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
**
50546037 AAAATTACT-GAAATACTTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
50546062 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:50546172 original size:27 final size:26
Alignment explanation
Indices: 50546125--50546203 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
50546115 GGTAAAAAGA
*
50546125 CGTAAAGCCCTGTAGGGTAAAGTGAT
1 CGTAAAGCCCTGTAGGGTAAAGTGAC
50546151 CGTAAAGCCCTTGTAGGGTAAAGTGAC
1 CGTAAAGCCC-TGTAGGGTAAAGTGAC
* *
50546178 CGTAATA-CCCTGTATGGTAAAATGAC
1 CGTAA-AGCCCTGTAGGGTAAAGTGAC
50546204 GAATATGCCC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
26 24 0.50
27 23 0.48
28 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.24
Consensus pattern (26 bp):
CGTAAAGCCCTGTAGGGTAAAGTGAC
Found at i:50547507 original size:20 final size:20
Alignment explanation
Indices: 50547447--50547507 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
50547437 ATAAATATGG
*
50547447 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
50547467 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
50547487 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
50547507 T
1 T
50547508 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:50547584 original size:24 final size:24
Alignment explanation
Indices: 50547557--50547722 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
50547547 GAGGAAGTGA
50547557 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50547581 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50547605 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50547629 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
50547652 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
50547675 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
50547699 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50547723 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
22 9 0.07
23 24 0.18
24 89 0.67
25 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:50547948 original size:31 final size:31
Alignment explanation
Indices: 50547913--50548007 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
50547903 CGTTTACAGT
50547913 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
50547944 AAAGGCATCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
50547975 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50548006 AA
1 AA
50548008 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50550774 original size:27 final size:27
Alignment explanation
Indices: 50550735--50550862 Score: 100
Period size: 27 Copynumber: 4.7 Consensus size: 27
50550725 TTAGAATACT
*
50550735 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACCGAAATACCC
* *
50550763 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACCGAAATACCC
* *
50550790 -TCGATTTGTAAATTTACCGAAATA-CC
1 TTAG-TTTGTAAAATTACCGAAATACCC
* *
50550816 TTCGACTTGTAAAATTACC-AAAGTACCC
1 TTAG-TTTGTAAAATTACCGAAA-TACCC
* * * *
50550844 TCAATTTATAGAATTACCG
1 TTAGTTTGTAAAATTACCG
50550863 TTTTACCCCT
Statistics
Matches: 80, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
26 7 0.09
27 63 0.79
28 10 0.12
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACCGAAATACCC
Found at i:50550843 original size:54 final size:54
Alignment explanation
Indices: 50550744--50550862 Score: 134
Period size: 54 Copynumber: 2.2 Consensus size: 54
50550734 TTTAGTTTAC
* * *
50550744 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTG
* * * *
50550798 TAAATTTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCTCAATTTA
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCTCAATTTG
*
50550852 TAGAATTACCG
1 TAAAATTACCG
50550863 TTTTACCCCT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 8 0.15
54 46 0.85
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTG
Found at i:50551132 original size:27 final size:27
Alignment explanation
Indices: 50550839--50551131 Score: 306
Period size: 27 Copynumber: 10.9 Consensus size: 27
50550829 ATTACCAAAG
* * *
50550839 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
50550866 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACTGTTT
*
50550893 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* * *
50550920 TACCCTCTACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50550947 TACCCTCGATTTACTGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50550974 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50551001 TACCCTTGATTTAAAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50551028 TACCCTCGATTTTCAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
50551055 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50551082 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
50551109 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
50551132 AAAATACCCT
Statistics
Matches: 228, Mismatches: 32, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.01
27 224 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:50551139 original size:27 final size:27
Alignment explanation
Indices: 50551055--50551329 Score: 110
Period size: 27 Copynumber: 10.1 Consensus size: 27
50551045 ATTATCGTTT
* * * ***
50551055 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
50551082 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
50551109 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
50551136 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
50551163 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *** **
50551190 TACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
50551217 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
50551244 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
50551271 TACCCTTGACTTT-CTAGAAATTA-TAGAAA
1 TACCCTCGA-TTTAC-A-AAATTACTA-AAA
* * * *
50551300 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
50551327 TAC
1 TAC
50551330 TTTTGGTTTG
Statistics
Matches: 200, Mismatches: 37, Indels: 22
0.77 0.14 0.08
Matches are distributed among these distances:
26 2 0.01
27 171 0.86
28 9 0.05
29 18 0.09
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:50551156 original size:54 final size:54
Alignment explanation
Indices: 50550974--50551265 Score: 153
Period size: 54 Copynumber: 5.4 Consensus size: 54
50550964 ATTATTGTTT
* * * ****
50550974 TACCCTTGATTTATAGAATTACTGTTTTACCCTTGATTTA-AAGAATTACTGTTT
1 TACCCTTGATTTATAAAATTACTATTTTACCCTCGATTTATAA-AATTACTAAAA
* * * * ***
50551028 TACCCTCGATTT-TCAAAATTA-TCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTAT-AAAATTACT-ATTTTACCCTCGATTTATAAAATTACTAAAA
* * *
50551082 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACTATTTTACCCTCGATTTATAAAATTACTAAAA
* * * *** * * *
50551136 TACCCTTGGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACTATTTTACCCTCGA-TTTATAAAATTACTAAAA
** * * * ** * * *
50551190 TACCCTTGGCTTGTGAAATTACCGA-AATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTA-CTATTTTACCCTCGATTTATAAAATTACTAAAA
* * *
50551244 TACCCCTGATTTACAAAGTTAC
1 TACCCTTGATTTATAAAATTAC
50551266 AGAAATACCC
Statistics
Matches: 191, Mismatches: 39, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
53 5 0.03
54 180 0.94
55 6 0.03
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (54 bp):
TACCCTTGATTTATAAAATTACTATTTTACCCTCGATTTATAAAATTACTAAAA
Found at i:50551167 original size:81 final size:81
Alignment explanation
Indices: 50550934--50551167 Score: 184
Period size: 81 Copynumber: 2.9 Consensus size: 81
50550924 CTCTACTTAC
** ** * ** * * ***
50550934 AGAATTACCGTTTTACCCTCGATTTACTGAATTATTGTTTTACCCTTGATTTATAGAATTACTGT
1 AGAATTACTATTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATTTATAAAATTACCAA
**
50550999 TTTACCCTTGATTTAA
66 AATACCCTTGATTTAA
* * ** * * * *
50551015 AGAATTACTGTTTTACCCTCGATTTTCAAAATTATCGTTTTACCGTCGATTTATAGAATTACTAT
1 AGAATTACTATTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATTTATAAAATTACCAA
** *
50551080 TTTACCCTTGATTTAC
66 AATACCCTTGATTTAA
* * *
50551096 AGAATTACTATTTTACCCTCGATTTACAAAATTA-C-TAAAATACCCTTGGTTTGTAAAATTACC
1 AGAATTACTATTTTACCCTCGATTTACAAAATTATCGT--AATACCCTCGATTTATAAAATTACC
50551159 AAAATACCC
64 AAAATACCC
50551168 CTAGTTTGTA
Statistics
Matches: 129, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 127 0.98
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.41
Consensus pattern (81 bp):
AGAATTACTATTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATTTATAAAATTACCAA
AATACCCTTGATTTAA
Found at i:50551421 original size:27 final size:27
Alignment explanation
Indices: 50551391--50551482 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
50551381 TACCCTATTA
*
50551391 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
50551418 GGTAAAGTGATCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
50551445 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
50551472 GGTAAAATGAC
1 GGTAAAATGAC
50551483 GAATATGCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:50552787 original size:20 final size:20
Alignment explanation
Indices: 50552727--50552787 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
50552717 ATAAATATGG
*
50552727 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
50552747 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
50552767 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
50552787 T
1 T
50552788 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:50552864 original size:24 final size:24
Alignment explanation
Indices: 50552837--50553002 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
50552827 GAGGAAGTGA
50552837 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50552861 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50552885 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50552909 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
50552932 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * * *
50552955 GAAAGGGCTTTTTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
50552979 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50553003 ATGATAAAGC
Statistics
Matches: 131, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.07
23 23 0.18
24 88 0.67
25 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:50553228 original size:31 final size:31
Alignment explanation
Indices: 50553193--50553287 Score: 154
Period size: 31 Copynumber: 3.1 Consensus size: 31
50553183 CGTTTACAGT
50553193 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
50553224 AAAGGCATCGGCCAAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
50553255 AAAGGCTTTGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50553286 AA
1 AA
50553288 TATGAAAAGG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 58 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50555190 original size:17 final size:17
Alignment explanation
Indices: 50555165--50555198 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50555155 CGACAACAAC
*
50555165 CTTAGTGCTTTAGCAAT
1 CTTAGTGCTGTAGCAAT
*
50555182 CTTATTGCTGTAGCAAT
1 CTTAGTGCTGTAGCAAT
50555199 AGGTGATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (17 bp):
CTTAGTGCTGTAGCAAT
Found at i:50563520 original size:2 final size:2
Alignment explanation
Indices: 50563513--50563540 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
50563503 GTTATAATTG
50563513 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50563541 GGTCTTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50565249 original size:16 final size:17
Alignment explanation
Indices: 50565217--50565256 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
50565207 ACAAAGAAAG
50565217 TTTGGGATTTCGAGATT
1 TTTGGGATTTCGAGATT
*
50565234 TTTGGG-TTTCGTGATT
1 TTTGGGATTTCGAGATT
*
50565250 CTTGGGA
1 TTTGGGA
50565257 CGTTACAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.12, C:0.07, G:0.33, T:0.47
Consensus pattern (17 bp):
TTTGGGATTTCGAGATT
Found at i:50568159 original size:28 final size:28
Alignment explanation
Indices: 50568127--50568212 Score: 109
Period size: 29 Copynumber: 3.0 Consensus size: 28
50568117 TACCTGTATC
*
50568127 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCATATTCATA
* *
50568155 TGGCCCATTAGGTCCAAATCATATTTATA
1 TGGCCCATTAGG-CCCAATCATATTCATA
* * *
50568184 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCATATTCATA
50568212 T
1 T
50568213 TCATGCTCAC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 24 0.49
29 25 0.51
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCATATTCATA
Found at i:50568232 original size:18 final size:17
Alignment explanation
Indices: 50568200--50568242 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
50568190 GTTAGGCCCA
* *
50568200 GTCACATTCATATTCAT
1 GTCACATACAAATTCAT
*
50568217 GCTCACATACAAATTCCT
1 G-TCACATACAAATTCAT
50568235 GTCACATA
1 GTCACATA
50568243 GCATCAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.33
Consensus pattern (17 bp):
GTCACATACAAATTCAT
Found at i:50570686 original size:18 final size:18
Alignment explanation
Indices: 50570663--50570697 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
50570653 TGAGACTTGG
50570663 TCAAATGTAAATCTTCGA
1 TCAAATGTAAATCTTCGA
50570681 TCAAATGTAAATCTTCG
1 TCAAATGTAAATCTTCG
50570698 GGCAAATCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.34
Consensus pattern (18 bp):
TCAAATGTAAATCTTCGA
Found at i:50570703 original size:18 final size:18
Alignment explanation
Indices: 50570664--50570704 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
50570654 GAGACTTGGT
*
50570664 CAAATGTAAATCTTCGAT
1 CAAATGTAAATCTTCGAG
*
50570682 CAAATGTAAATCTTCGGG
1 CAAATGTAAATCTTCGAG
50570700 CAAAT
1 CAAAT
50570705 CTCTAATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (18 bp):
CAAATGTAAATCTTCGAG
Found at i:50577318 original size:28 final size:28
Alignment explanation
Indices: 50577255--50577319 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 28
50577245 TCAGTGTACG
* * *
50577255 AAATATTGGGAATGGCACTTAATGTGCG
1 AAATATTGAGAATGACACTTAATGTGCA
* * * *
50577283 AGACATTGAGAATGACACTTAGTGTGTA
1 AAATATTGAGAATGACACTTAATGTGCA
50577311 AAATATTGA
1 AAATATTGA
50577320 ATGATTAAAT
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGCA
Found at i:50577464 original size:26 final size:26
Alignment explanation
Indices: 50577428--50577479 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
50577418 ATGGCATTCG
*
50577428 TGTTGGTGTTATATCCGGGCTAAGTC
1 TGTTGGTGTTATATCCAGGCTAAGTC
50577454 TGTTGGTGTTATATCCAGGCTAAGTC
1 TGTTGGTGTTATATCCAGGCTAAGTC
50577480 CTGAAGGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.17, C:0.15, G:0.29, T:0.38
Consensus pattern (26 bp):
TGTTGGTGTTATATCCAGGCTAAGTC
Found at i:50577500 original size:65 final size:65
Alignment explanation
Indices: 50577392--50577518 Score: 191
Period size: 65 Copynumber: 2.0 Consensus size: 65
50577382 GACTTTATAA
** * * *
50577392 TGGTGTTATATCTGGGCTAAGTCCCGATGGCATTCGTGTTGGTGTTATATCCGGGCTAAGTCTGT
1 TGGTGTTATATCCAGGCTAAGTCCCGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCTGT
* *
50577457 TGGTGTTATATCCAGGCTAAGTCCTGAAGGCATTCATGCTGGTGTTATATCTGGGCTAAGTC
1 TGGTGTTATATCCAGGCTAAGTCCCGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTC
50577519 CCGAAGGCGT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.18, C:0.17, G:0.29, T:0.35
Consensus pattern (65 bp):
TGGTGTTATATCCAGGCTAAGTCCCGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCTGT
Found at i:50577690 original size:40 final size:39
Alignment explanation
Indices: 50577457--50577669 Score: 320
Period size: 39 Copynumber: 5.5 Consensus size: 39
50577447 CTAAGTCTGT
* * *
50577457 TGGTGTTATATCCAGGCTAAGTCCTGAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
50577496 TGGTGTTATATCTGGGCTAAGTCCCGAAGGCGTTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
50577535 TGGTGTTATATCCGGGCTAAGTCCCAAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
50577574 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
50577613 TGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
*
50577652 TGGTATTATATCCGGGCT
1 TGGTGTTATATCCGGGCT
50577670 TAAAGTCTCG
Statistics
Matches: 159, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 148 0.93
40 11 0.07
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.30
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:50586204 original size:71 final size:71
Alignment explanation
Indices: 50586118--50586281 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50586108 CGATTTGTCT
50586118 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50586183 CTTTCA
66 CTTTCA
50586189 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50586254 CTTTCA
66 CTTTCA
50586260 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
50586282 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:50586319 original size:71 final size:70
Alignment explanation
Indices: 50586118--50586315 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
50586108 CGATTTGTCT
* * * *
50586118 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
50586183 CTTTCA
65 CTTTCA
* * * *
50586189 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
50586254 CTTTCA
65 CTTTCA
* *
50586260 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
50586316 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:50590996 original size:80 final size:80
Alignment explanation
Indices: 50590832--50591036 Score: 283
Period size: 80 Copynumber: 2.6 Consensus size: 80
50590822 TATTTCAGTA
* * * **
50590832 ATTT-GATAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAAT
1 ATTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTTAC-AATCGACAGTATTTCAGTAAT
50590896 TTTCTAAACTGAGGGT
65 TTTCTAAACTGAGGGT
50590912 ATTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCGACAGTATTTCAGTAATT
1 ATTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCGACAGTATTTCAGTAATT
50590977 TTAC-AAA-TCGAGGGT
66 TT-CTAAACT-GAGGGT
* *
50590992 ATTTC-AGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAA
1 ATTTCGA-TAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAA
50591037 ACCAGGGGTA
Statistics
Matches: 114, Mismatches: 7, Indels: 8
0.88 0.05 0.06
Matches are distributed among these distances:
79 2 0.02
80 76 0.67
81 36 0.32
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (80 bp):
ATTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCGACAGTATTTCAGTAATT
TTCTAAACTGAGGGT
Found at i:50591100 original size:27 final size:28
Alignment explanation
Indices: 50590838--50591190 Score: 283
Period size: 27 Copynumber: 13.1 Consensus size: 28
50590828 AGTAATTTGA
** *
50590838 TAATTTTACAAGTC-GAGGGTATTTCAG
1 TAATTTTACAAACCAGAGGGTATTTTAG
* * *
50590865 TAATTTCACAAATC-GAGGGTATTTCAG
1 TAATTTTACAAACCAGAGGGTATTTTAG
* *
50590892 TAATTTT-CTAAA-CTGAGGGTA-TTTCG
1 TAATTTTAC-AAACCAGAGGGTATTTTAG
*
50590918 ATAATTTTACAAATC-GAGGGTATTTTAG
1 -TAATTTTACAAACCAGAGGGTATTTTAG
* ** *
50590946 TAATTTTAC-AATC-GACAGTATTTCAG
1 TAATTTTACAAACCAGAGGGTATTTTAG
* *
50590972 TAATTTTACAAATC-GAGGGTATTTCAG
1 TAATTTTACAAACCAGAGGGTATTTTAG
* *
50590999 TAATTTTACAAATCA-AGGGTATTTTGG
1 TAATTTTACAAACCAGAGGGTATTTTAG
*
50591026 TAATTTTACAAACCAG-GGGTATTTTGG
1 TAATTTTACAAACCAGAGGGTATTTTAG
* *
50591053 TAATCTTATC-AA-CAAAGGGTATTTTAG
1 TAATTTTA-CAAACCAGAGGGTATTTTAG
*
50591080 TAATTTTACAAACCAGA-GGTATTTTGG
1 TAATTTTACAAACCAGAGGGTATTTTAG
* * *
50591107 TAATCTTATC-AA-CAAAAGGTATTTTAG
1 TAATTTTA-CAAACCAGAGGGTATTTTAG
*
50591134 TAATTTTACAAACCAG-GGGTATTTTGG
1 TAATTTTACAAACCAGAGGGTATTTTAG
** * *
50591161 TAATTTTGTAAACCA-ATGGTATTTTGG
1 TAATTTTACAAACCAGAGGGTATTTTAG
50591188 TAA
1 TAA
50591191 ATTGGTAAAC
Statistics
Matches: 278, Mismatches: 30, Indels: 36
0.81 0.09 0.10
Matches are distributed among these distances:
26 35 0.13
27 230 0.83
28 13 0.05
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (28 bp):
TAATTTTACAAACCAGAGGGTATTTTAG
Found at i:50596616 original size:42 final size:42
Alignment explanation
Indices: 50596509--50596668 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 42
50596499 AGCTCGTACA
* * * *
50596509 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCCAATATTG
1 ATGCCAATGTCCCA-ACGTGGTCTTACATGAAATCAAATATCG
* ** **
50596552 ATGCCACTGTCCCAAAAATGGTCTTGGATGAAATCAAATA-CG
1 ATGCCAATGTCCC-AACGTGGTCTTACATGAAATCAAATATCG
* *
50596594 ATGCCAATGTCCCGAACGTGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCC-AACGTGGTCTTACATG-AAATCA-AATATCG
* * *
50596638 ATGCAAACGTCCCAGATGTGGTCTTACATGA
1 ATGCCAATGTCCCA-ACGTGGTCTTACATGA
50596669 TAACACATAT
Statistics
Matches: 91, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
42 24 0.26
43 38 0.42
44 29 0.32
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAACGTGGTCTTACATGAAATCAAATATCG
Found at i:50599733 original size:40 final size:40
Alignment explanation
Indices: 50599655--50599737 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
50599645 TCACTATTTG
* * * *
50599655 TGGCACTTAGCGTGCGATTCGACTTAACTTCAGGTATATA
1 TGGCACTAAGCGTGCAATTCAACATAACTTCAGGTATATA
*
50599695 TGGCACTAAGCGTGCAATTCAACATAGCTTC-GGCTATATA
1 TGGCACTAAGCGTGCAATTCAACATAACTTCAGG-TATATA
50599735 TGG
1 TGG
50599738 AACTTAGTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (40 bp):
TGGCACTAAGCGTGCAATTCAACATAACTTCAGGTATATA
Found at i:50600005 original size:52 final size:52
Alignment explanation
Indices: 50599929--50600039 Score: 204
Period size: 52 Copynumber: 2.1 Consensus size: 52
50599919 CAAAGTTTGT
50599929 ATATAAGCTTATGAATAAGCAGGTGAAAGGTTTGTTAGTAATCATAAAGTAC
1 ATATAAGCTTATGAATAAGCAGGTGAAAGGTTTGTTAGTAATCATAAAGTAC
*
50599981 ATATAAGCTTATGAATAAGTAGGTGAAAGGTTTGTTAGTAATCATAAAGTAC
1 ATATAAGCTTATGAATAAGCAGGTGAAAGGTTTGTTAGTAATCATAAAGTAC
50600033 ATGATAA
1 AT-ATAA
50600040 TAGTTTGGAT
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 53 0.93
53 4 0.07
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (52 bp):
ATATAAGCTTATGAATAAGCAGGTGAAAGGTTTGTTAGTAATCATAAAGTAC
Found at i:50601632 original size:43 final size:42
Alignment explanation
Indices: 50601536--50601635 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 42
50601526 TACTTATGAT
* *
50601536 TTACATGTAAGACCATGTCTAGGACATTGGCATCGTATTTGA
1 TTACATGTAAGACCATGCCTAGGACAGTGGCATCGTATTTGA
* * * *
50601578 TTTCGTATAAGACCCTGCCTAGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGCCTAGGACAGTGGCATCG-TATTTGA
50601621 TTACATGTAAGACCA
1 TTACATGTAAGACCA
50601636 CATCTGGGAC
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 29 0.62
43 18 0.38
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCATGCCTAGGACAGTGGCATCGTATTTGA
Found at i:50601652 original size:43 final size:42
Alignment explanation
Indices: 50601497--50601653 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 42
50601487 TGTGTTTTAG
* * *
50601497 TGTAAGATCACATCTGGGACGTTGGGATC-TACTTATGATTTACA
1 TGTAAGACCACATCTAGGACGTTGGCATCGTA-TT-TGA-TTACA
** * * *
50601541 TGTAAGACCATGTCTAGGACATTGGCATCGTATTTGATTTCG
1 TGTAAGACCACATCTAGGACGTTGGCATCGTATTTGATTACA
*
50601583 TATAAGACC-C-TGCCTAGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCACAT--CTAGGAC-GTTGGCATCG-TATTTGATTACA
*
50601626 TGTAAGACCACATCTGGGACGTTGGCAT
1 TGTAAGACCACATCTAGGACGTTGGCAT
50601654 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
40 1 0.01
42 27 0.30
43 33 0.37
44 26 0.29
45 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACATCTAGGACGTTGGCATCGTATTTGATTACA
Found at i:50607755 original size:49 final size:49
Alignment explanation
Indices: 50607700--50607965 Score: 373
Period size: 47 Copynumber: 5.5 Consensus size: 49
50607690 TTTTACATTA
*
50607700 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
50607749 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
50607798 GCCA-TAGGCCTTATCACCTATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
50607846 GCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* * * *
50607893 GCCA-TACAGCCTTATCAC--ACATATGCACTTTCACATTCATCACATTG
1 GCCATTA-GGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
50607940 GCCATTCGGCCTTATCACACATATAT
1 GCCATTAGGCCTTATCACATATATAT
50607966 GTATATCATA
Statistics
Matches: 201, Mismatches: 11, Indels: 10
0.91 0.05 0.05
Matches are distributed among these distances:
46 2 0.01
47 82 0.41
48 47 0.23
49 70 0.35
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:50607806 original size:97 final size:94
Alignment explanation
Indices: 50607700--50607964 Score: 379
Period size: 97 Copynumber: 2.8 Consensus size: 94
50607690 TTTTACATTA
*
50607700 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCA-TAGGCCTTATCAC-TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
50607765 ACATATACATACACTTTCACATTCACCACATCG
64 ACATAT--ATACACTTTCACATTCACCACATCG
*
50607798 GCCATAGGCCTTATCACCTATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 GCCATAGGCCTTATCA-CTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
* *
50607863 CATATATACACTTTCACATTCATCACATTG
65 CATATATACACTTTCACATTCACCACATCG
* * * * *
50607893 GCCATACAGCCTTATCAC-ACATATGCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 GCCATA-GGCCTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
50607957 CACATATA
65 CATATATA
50607965 TGTATATCAT
Statistics
Matches: 154, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
94 48 0.31
95 30 0.19
96 9 0.06
97 62 0.40
98 5 0.03
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (94 bp):
GCCATAGGCCTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
ATATATACACTTTCACATTCACCACATCG
Found at i:50610487 original size:47 final size:47
Alignment explanation
Indices: 50610433--50610717 Score: 401
Period size: 47 Copynumber: 6.1 Consensus size: 47
50610423 TTAGGATTTT
** * * *
50610433 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
50610480 ATGTGATGAATGTGAACATGCATATGTGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
50610527 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
50610574 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
50610621 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
50610668 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCGGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
50610715 ATG
1 ATG
50610718 CGAAATGTGT
Statistics
Matches: 222, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 219 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:50610580 original size:22 final size:22
Alignment explanation
Indices: 50610553--50610627 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
50610543 CATGCATATG
50610553 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
50610575 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
50610598 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
50610622 TGTGAT
1 TGTGAT
50610628 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:50610747 original size:46 final size:46
Alignment explanation
Indices: 50610691--50610873 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
50610681 GGAAGTGTAT
* * *
50610691 ATATGTGGTAAAGCGGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
50610737 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
50610783 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
50610829 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
50610874 TGTATATATA
Statistics
Matches: 128, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 128 1.00
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:50612413 original size:40 final size:40
Alignment explanation
Indices: 50612358--50612732 Score: 635
Period size: 40 Copynumber: 9.4 Consensus size: 40
50612348 TGAGAGTTAT
50612358 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
50612398 ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
50612438 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
50612478 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
50612518 ATGTATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
50612558 ATGTATCCGGGCTAAGTCCCGATA-AGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGA-AGAGCATTCGTGCTAGTG
* *
50612598 ATATATCCGGGCTAAGTACCGATGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
50612638 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
50612678 ATATATCTGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
50612718 ATATATCCAGGCTAA
1 ATATATCCGGGCTAA
50612733 ACCTCGAAGG
Statistics
Matches: 318, Mismatches: 15, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
40 317 1.00
41 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:50612875 original size:57 final size:57
Alignment explanation
Indices: 50612762--50612915 Score: 204
Period size: 57 Copynumber: 2.7 Consensus size: 57
50612752 TGGAATTATA
* * * * *
50612762 AGGCACTGTGTGTGCAAGTTCTCCAACCGAGCAC--TGTGTGCCAGATCAGTAGTTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAATTG
* **
50612817 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAATTG
* *
50612874 AGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTG
50612916 TGAAATCAGT
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
55 30 0.34
57 57 0.66
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (57 bp):
AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAATTG
Found at i:50612889 original size:29 final size:29
Alignment explanation
Indices: 50612796--50612891 Score: 106
Period size: 29 Copynumber: 3.3 Consensus size: 29
50612786 AACCGAGCAC
* * *
50612796 TGTGTGCCAGATCAGTAGTTGAGGCACTA
1 TGTGTGCGAGATTAGTAATTGAGGCACTA
** *
50612825 TGTGTGCGAG-TTCTTCAATCGA-GCACTA
1 TGTGTGCGAGATTAGT-AATTGAGGCACTA
*
50612853 TGTGTGCGAGATTGGTAATTGAGGCACTA
1 TGTGTGCGAGATTAGTAATTGAGGCACTA
50612882 TGTGTGCGAG
1 TGTGTGCGAG
50612892 TTCTTTAATC
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
28 23 0.42
29 32 0.58
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.30
Consensus pattern (29 bp):
TGTGTGCGAGATTAGTAATTGAGGCACTA
Found at i:50612900 original size:29 final size:28
Alignment explanation
Indices: 50612819--50612915 Score: 124
Period size: 28 Copynumber: 3.4 Consensus size: 28
50612809 AGTAGTTGAG
*
50612819 GCACTATGTGTGCGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
** *
50612847 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATCGA
50612875 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATCGA
*
50612904 GCGCTATGTGTG
1 GCACTATGTGTG
50612916 TGAAATCAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
28 34 0.59
29 24 0.41
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATCGA
Found at i:50623251 original size:49 final size:49
Alignment explanation
Indices: 50623081--50623264 Score: 223
Period size: 49 Copynumber: 3.8 Consensus size: 49
50623071 TGAGGTCACG
* * *
50623081 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
* * * *
50623130 TGTGTAG---T-AGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT-GGTCGCA
* * *
50623177 TGTGTAGTACTAAGTGCAGGATACTATGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
*
50623226 TGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
50623265 GCTTTGGCTA
Statistics
Matches: 112, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 24 0.21
46 3 0.03
47 11 0.10
49 46 0.41
50 3 0.03
51 25 0.22
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
Found at i:50625435 original size:76 final size:78
Alignment explanation
Indices: 50625305--50625490 Score: 236
Period size: 76 Copynumber: 2.4 Consensus size: 78
50625295 GAATCCAGTC
* *
50625305 ACCAGCACAAAACCTGCGGGACTTTAAGCTCGAATATAATACTAGCACTAAGCCTGCGGGATTTA
1 ACCAGCACAAAACCTGCGGGACTTTAAGCCCGAATATAATACTAGCACGAAGCCTGCGGGATTTA
*
50625370 ACTCGGATATAAT
66 ACCCGGATATAAT
* * *
50625383 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAATA-TCAGCACGAAGCCTGCGGGATTT
1 ACCAGCACAAAACCTGCGGGACTTTAAGCCCGAATATAATACT-AGCACGAAGCCTGCGGGATTT
50625445 AACCCGGATATAAT
65 AACCCGGATATAAT
* * * *
50625459 TCCAGCATATAGCCTGC-GGATCTTTAAGCCCG
1 ACCAGCACAAAACCTGCGGGA-CTTTAAGCCCG
50625491 GATACACATC
Statistics
Matches: 94, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
75 4 0.04
76 57 0.61
77 10 0.11
78 23 0.24
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (78 bp):
ACCAGCACAAAACCTGCGGGACTTTAAGCCCGAATATAATACTAGCACGAAGCCTGCGGGATTTA
ACCCGGATATAAT
Found at i:50625477 original size:38 final size:38
Alignment explanation
Indices: 50625305--50625465 Score: 223
Period size: 38 Copynumber: 4.2 Consensus size: 38
50625295 GAATCCAGTC
* * * *
50625305 ACCAGCACAAAACCTGCGGGACTTTAAGCTCGAATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* * *
50625345 ACTAGCACTAAGCCTGCGGGATTTAACTCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
50625383 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
50625421 ATCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
50625459 TCCAGCA
1 ACCAGCA
50625466 TATAGCCTGC
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 88 0.79
39 5 0.05
40 18 0.16
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:50633522 original size:38 final size:38
Alignment explanation
Indices: 50633444--50633615 Score: 193
Period size: 38 Copynumber: 4.5 Consensus size: 38
50633434 GAATCCAGTC
* * * * *
50633444 ACCAGCACAAAACCTACGGGACTTTAAGATCGAATATAAT
1 ACCAGCACTAAGCCTGCGGGA-TTTAA-CTCGGATATAAT
** *
50633484 ACCAGCACTAAGCCTGTAGGATTTAACCCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACTCGGATATAAT
* *
50633522 ACCAGCACAAAGCCTGCGGGATTTAACTCGAATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACTCGGATATAAT
* *
50633560 ACAAGCACGAAGCCTGCGGGATTTAACTCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACTCGGATATAAT
*
50633598 TCCAGCA-TATAGCCTGCG
1 ACCAGCACTA-AGCCTGCG
50633616 AATCTTTAAG
Statistics
Matches: 112, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
37 1 0.01
38 90 0.80
39 5 0.04
40 16 0.14
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (38 bp):
ACCAGCACTAAGCCTGCGGGATTTAACTCGGATATAAT
Found at i:50633567 original size:76 final size:78
Alignment explanation
Indices: 50633444--50633615 Score: 231
Period size: 76 Copynumber: 2.2 Consensus size: 78
50633434 GAATCCAGTC
* * * * *
50633444 ACCAGCACAAAACCTACGGGACTTTAAGATCGAATATAATACCAGCACTAAGCCTGTAGGATTTA
1 ACCAGCACAAAGCCTGCGGGACTTTAAGATCGAATATAATACAAGCACGAAGCCTGCAGGATTTA
50633509 ACCCGGATATAAT
66 ACCCGGATATAAT
* *
50633522 ACCAGCACAAAGCCTGCGGGA-TTTAA-CTCGAATATAATACAAGCACGAAGCCTGCGGGATTTA
1 ACCAGCACAAAGCCTGCGGGACTTTAAGATCGAATATAATACAAGCACGAAGCCTGCAGGATTTA
*
50633585 ACTCGGATATAAT
66 ACCCGGATATAAT
* * *
50633598 TCCAGCATATAGCCTGCG
1 ACCAGCACAAAGCCTGCG
50633616 AATCTTTAAG
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
76 59 0.71
77 5 0.06
78 19 0.23
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (78 bp):
ACCAGCACAAAGCCTGCGGGACTTTAAGATCGAATATAATACAAGCACGAAGCCTGCAGGATTTA
ACCCGGATATAAT
Found at i:50635485 original size:40 final size:39
Alignment explanation
Indices: 50635441--50635566 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
50635431 GGGACTCAAC
*
50635441 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
50635481 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
50635521 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
50635561 CCGGAT
1 CCGGAT
50635567 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:50635525 original size:80 final size:80
Alignment explanation
Indices: 50635380--50635566 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
50635370 GCTACACATT
* * *
50635380 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
50635444 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
50635460 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
50635523 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
50635541 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
50635567 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:50641433 original size:19 final size:19
Alignment explanation
Indices: 50641409--50641448 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
50641399 GCTCTTCCGG
50641409 ACACAACAAAAGTCAGAGT
1 ACACAACAAAAGTCAGAGT
*
50641428 ACACAACAGAAGTCAGAGT
1 ACACAACAAAAGTCAGAGT
50641447 AC
1 AC
50641449 TCCACCAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.17, T:0.10
Consensus pattern (19 bp):
ACACAACAAAAGTCAGAGT
Found at i:50652198 original size:40 final size:40
Alignment explanation
Indices: 50652139--50652307 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
50652129 CGGGACTTTA
* * *
50652139 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
50652179 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
50652219 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
50652259 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
50652299 CCCGGATAT
1 CCCGGATAT
50652308 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:50654542 original size:41 final size:41
Alignment explanation
Indices: 50654497--50654614 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
50654487 TGAAAGATAA
50654497 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
50654538 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50654568 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50654609 ATGTAG
1 ATGTAG
50654615 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:50654553 original size:71 final size:71
Alignment explanation
Indices: 50654465--50654628 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50654455 GAGATGTATC
50654465 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50654530 AGGACA
66 AGGACA
50654536 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50654601 AGGACA
66 AGGACA
50654607 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
50654629 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:50656506 original size:38 final size:35
Alignment explanation
Indices: 50656447--50656564 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
50656437 TCAATCATGC
*
50656447 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT--T-AT
50656486 ACTGGGCCGAAGCCTTTTCATATTTCATA--TTAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTTAT
50656519 --TGGGCCGAAGCCTTTTCATATTTCATA---T-T
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTTAT
50656548 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
50656565 ACTGTAAACG
Statistics
Matches: 76, Mismatches: 1, Indels: 12
0.85 0.01 0.13
Matches are distributed among these distances:
29 1 0.01
30 1 0.01
31 42 0.55
33 2 0.03
34 1 0.01
36 1 0.01
38 17 0.22
39 11 0.14
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTTAT
Found at i:50656508 original size:31 final size:31
Alignment explanation
Indices: 50656470--50656564 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
50656460 CCTTTTCATA
*
50656470 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
*
50656501 TTTCATATTTCATATTATTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
50656532 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
50656563 TT
1 TT
50656565 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:50656835 original size:23 final size:24
Alignment explanation
Indices: 50656756--50656898 Score: 184
Period size: 24 Copynumber: 6.0 Consensus size: 24
50656746 GCTTTATCAT
* *
50656756 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* * **
50656781 ATAACTAGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
50656805 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTG
50656828 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
50656852 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
50656876 ATAACT-GGGCATAAGCCCCTTTT
1 ATAACTGGGGCATAAG-CCCTTTT
50656899 CACTTCCTCC
Statistics
Matches: 107, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
23 30 0.28
24 66 0.62
25 11 0.10
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:50656839 original size:47 final size:47
Alignment explanation
Indices: 50656756--50656893 Score: 181
Period size: 47 Copynumber: 2.9 Consensus size: 47
50656746 GCTTTATCAT
* * *
50656756 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACT-GGGCATAAGCCCTTTCA
**
50656805 ATAACTGGGGCATAAGCCC-TTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCATAAGCCCTTTCA
50656852 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGCATAAGCCC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGCATAAGCCC
50656894 CTTTTCACTT
Statistics
Matches: 81, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
47 54 0.67
48 15 0.19
49 12 0.15
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGCATAAGCCCTTTCA
Found at i:50656972 original size:20 final size:20
Alignment explanation
Indices: 50656947--50657007 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
50656937 TTATGATTAC
50656947 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
50656967 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
50656987 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
50657007 A
1 A
50657008 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:50657082 original size:25 final size:25
Alignment explanation
Indices: 50657050--50657097 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50657040 ATACATAAAC
* * *
50657050 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
50657075 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
50657098 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:50661681 original size:18 final size:16
Alignment explanation
Indices: 50661649--50661687 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
50661639 TTAGTAAATA
50661649 AATAATAAAATGTTAT
1 AATAATAAAATGTTAT
*
50661665 TATAATAATATATGTTAT
1 AATAATAA-A-ATGTTAT
50661683 AATAA
1 AATAA
50661688 CATTAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (16 bp):
AATAATAAAATGTTAT
Found at i:50662248 original size:43 final size:42
Alignment explanation
Indices: 50662200--50662353 Score: 139
Period size: 43 Copynumber: 3.6 Consensus size: 42
50662190 ATAGGATTTC
* *
50662200 CGATATGTGTTCTCGTGTAAGACCATGTCTAGGACGTTGGCAT
1 CGATATGTGTT-TAGTGTAAGACCATGTCTAGGACATTGGCAT
* * *
50662243 CGATATGTGATTTTGAGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATGTG-TTTAGTGTAAGACCATGTCTAGGACATTGGCAT
* * * *
50662286 CG-TAATTGTGATTAGTGTAAGACCCTGTCTAGGATAGTGGCAT
1 CGAT-A-TGTGTTTAGTGTAAGACCATGTCTAGGACATTGGCAT
* * * *
50662329 TGACATGTGATTACATGTAAGACCA
1 CGATATGTGTTTA-GTGTAAGACCA
50662354 CATTTGGGAT
Statistics
Matches: 91, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
42 9 0.10
43 76 0.84
44 6 0.07
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (42 bp):
CGATATGTGTTTAGTGTAAGACCATGTCTAGGACATTGGCAT
Found at i:50671836 original size:31 final size:31
Alignment explanation
Indices: 50671795--50671896 Score: 105
Period size: 31 Copynumber: 3.1 Consensus size: 31
50671785 CCTTTTCATA
*
50671795 TTTCATATTTCATAACACTGGGCCAAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
*
50671826 TTTCAAATTTCATATTACATAACACTGGGCCGAAGCCT
1 TTTC-AA----AT-TT-CATAACACTGGGCCAAAGCCT
**
50671864 TTTCAAATTTCATATTACTGGGCCAAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
50671895 TT
1 TT
50671897 ACTGTAAACG
Statistics
Matches: 59, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
31 24 0.41
32 3 0.05
33 2 0.03
36 2 0.03
37 4 0.07
38 24 0.41
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCAAAGCCT
Found at i:50671836 original size:38 final size:38
Alignment explanation
Indices: 50671772--50671881 Score: 175
Period size: 38 Copynumber: 2.9 Consensus size: 38
50671762 TCAAACATGT
* * *
50671772 ACTGGGCCATAGCCCTTTTCATATTTCATATTTCATAAC
1 ACTGGGCCAAAG-CCTTTTCAAATTTCATATTACATAAC
50671811 ACTGGGCCAAAGCCTTTTCAAATTTCATATTACATAAC
1 ACTGGGCCAAAGCCTTTTCAAATTTCATATTACATAAC
*
50671849 ACTGGGCCGAAGCCTTTTCAAATTTCATATTAC
1 ACTGGGCCAAAGCCTTTTCAAATTTCATATTAC
50671882 TGGGCCAAAG
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 56 0.84
39 11 0.16
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.35
Consensus pattern (38 bp):
ACTGGGCCAAAGCCTTTTCAAATTTCATATTACATAAC
Found at i:50672136 original size:24 final size:24
Alignment explanation
Indices: 50672089--50672374 Score: 431
Period size: 24 Copynumber: 12.0 Consensus size: 24
50672079 GCTTTATCAT
*
50672089 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
50672114 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
50672138 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
50672162 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50672185 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
50672208 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
50672233 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50672256 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
50672280 ATAACTGGGGTATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
50672304 ATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
50672328 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
50672352 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
50672375 TCACTTCCTC
Statistics
Matches: 247, Mismatches: 8, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
23 67 0.27
24 146 0.59
25 34 0.14
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:50672191 original size:71 final size:72
Alignment explanation
Indices: 50672110--50672375 Score: 432
Period size: 71 Copynumber: 3.7 Consensus size: 72
50672100 CCTAGCCTCT
50672110 TTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGC
1 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGC
50672173 ATAAGCCC
65 ATAAGCCC
* *
50672181 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCA
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGCA
50672245 TAAGCCC
66 TAAGCCC
* *
50672252 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGTATAAGCCC-TTTTGATAACTGGGGCA
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGCA
50672316 TAAGCCC
66 TAAGCCC
* *
50672323 TTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTT
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
50672376 CACTTCCTCC
Statistics
Matches: 182, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
70 16 0.09
71 90 0.49
72 72 0.40
73 4 0.02
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (72 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGCA
TAAGCCC
Found at i:50672447 original size:9 final size:9
Alignment explanation
Indices: 50672433--50672489 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
50672423 ATCTCGTGTG
50672433 CATATCATA
1 CATATCATA
*
50672442 CATATCATGTG
1 CATATCA--TA
50672453 CATATCATA
1 CATATCATA
* *
50672462 CATGTCATGTG
1 CATATCA--TA
50672473 CATATCATA
1 CATATCATA
50672482 CATATCAT
1 CATATCAT
50672490 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:50672452 original size:20 final size:20
Alignment explanation
Indices: 50672429--50672491 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
50672419 GAACATCTCG
50672429 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
50672449 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
50672469 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
50672489 TGT
1 TGT
50672492 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:50673839 original size:27 final size:27
Alignment explanation
Indices: 50673739--50673822 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
50673729 GGGCATATTC
* *
50673739 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
50673766 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
50673793 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
50673820 GTC
1 GTC
50673823 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:50673914 original size:27 final size:27
Alignment explanation
Indices: 50673883--50674113 Score: 144
Period size: 27 Copynumber: 8.5 Consensus size: 27
50673873 GGTAAATCTA
* *
50673883 CAAACCAAGGGTATTTCAGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * * **
50673910 TAAACCAATGGTATTTCTATAACTTTTAG
1 CAAATCAAGGGTATTTCGGTAA-TTTT-G
* *
50673939 -AAAGTCAAGGGTATTTCTGTAACTTTG
1 CAAA-TCAAGGGTATTTCGGTAATTTTG
* * * *
50673966 TAAATCAGGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
** **
50673993 CAAATTGAGGGTATTTCGGTAATTTCA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * *
50674020 CAAA-CCAGTGGTATTTTGGTAATTTTA
1 CAAATCAAG-GGTATTTCGGTAATTTTG
* * *
50674047 CAAA-CTAGGGGTATTTTGGTAATTTTA
1 CAAATC-AAGGGTATTTCGGTAATTTTG
** *
50674074 CAAATTGAGGGTATTTCTGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
50674101 TAAATCGAGGGTA
1 CAAATCAAGGGTA
50674114 AAATAGTAAT
Statistics
Matches: 164, Mismatches: 33, Indels: 14
0.78 0.16 0.07
Matches are distributed among these distances:
26 2 0.01
27 132 0.80
28 14 0.09
29 16 0.10
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCGGTAATTTTG
Found at i:50674033 original size:54 final size:54
Alignment explanation
Indices: 50673869--50674077 Score: 163
Period size: 54 Copynumber: 3.8 Consensus size: 54
50673859 TACAAGGGTG
* * * * * *** *
50673869 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAGTGGTA
* * * * * ** * *
50673923 TTTCT-ATAACTTTTAGAAAGTCAAGGGTATTTCTGTAACTTT-GTAAATCAGGGGTA
1 TTT-TGGTAA-TTTTACAAACT-AGGGGTATTTCGGTAA-TTTCACAAACCAGTGGTA
*
50673979 TTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTA
1 TTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAACCAGTGGTA
* *
50674033 TTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA
1 TTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAA
50674078 TTGAGGGTAT
Statistics
Matches: 125, Mismatches: 22, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
53 3 0.02
54 69 0.55
55 18 0.14
56 32 0.26
57 3 0.02
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (54 bp):
TTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAGTGGTA
Found at i:50674123 original size:81 final size:81
Alignment explanation
Indices: 50673972--50674124 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 81
50673962 TTTGTAAATC
***
50673972 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTAAAAT
*
50674037 GGTAATTTTACAAACT
66 AGTAATTTTACAAACT
* *** *
50674053 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAG-GGTAAAA
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CCAGTGGTAAAA
50674117 TAGTAATT
65 TAGTAATT
50674125 CTGTAAATCA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
81 59 0.95
82 3 0.05
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTAAAAT
AGTAATTTTACAAACT
Found at i:50674367 original size:27 final size:27
Alignment explanation
Indices: 50674092--50674356 Score: 334
Period size: 27 Copynumber: 9.8 Consensus size: 27
50674082 GGGTATTTCT
* **
50674092 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
50674119 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
50674146 GTAATTCTATAAATCGACGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
50674173 ATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
50674200 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * **
50674227 GTAATTTTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
50674254 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
50674281 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
50674308 GTAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* *
50674335 ATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
50674357 CTTTGGTAAT
Statistics
Matches: 206, Mismatches: 30, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 205 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:50674415 original size:26 final size:26
Alignment explanation
Indices: 50674362--50674450 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
50674352 GGGTACTTTG
*
50674362 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCG-AGGTATTTCA
50674389 GTAATTTTACAAATCGAGGTATTTCA
1 GTAATTTTACAAATCGAGGTATTTCA
* * *
50674415 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATC-GA-GGTATTTCA
50674442 GTAATTTTA
1 GTAATTTTA
50674451 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
25 1 0.02
26 23 0.42
27 31 0.56
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAAATCGAGGTATTTCA
Found at i:50674464 original size:27 final size:27
Alignment explanation
Indices: 50674362--50674465 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
50674352 GGGTACTTTG
* *
50674362 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
*
50674389 GTAATTTTACAAA-T-CGAGGTATTTCA
1 GTAATTTTACAAACTAAGA-GTATTTCA
* * *
50674415 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
50674442 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
50674466 CTAAACATGG
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
24 1 0.02
26 20 0.32
27 33 0.53
28 8 0.13
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:50677076 original size:39 final size:39
Alignment explanation
Indices: 50676995--50677160 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 39
50676985 AAATTGAATG
* *
50676995 ATATCCGGGCTAAG-CCCGAAGACAATTATGC--TGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGG---TT
* *
50677034 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
**
50677073 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTGGTT
* * *
50677113 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGGTT
50677153 ATATCCGG
1 ATATCCGG
50677161 TTATATTCCG
Statistics
Matches: 106, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.40
40 56 0.53
41 2 0.02
42 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
Found at i:50685066 original size:40 final size:40
Alignment explanation
Indices: 50685000--50685150 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
50684990 AAATTGAATG
* * *
50685000 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
50685039 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
50685079 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
50685119 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
50685151 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:50685164 original size:40 final size:40
Alignment explanation
Indices: 50685037--50685166 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
50685027 ATGCTGGAAA
* * *
50685037 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
50685077 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
50685117 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
50685157 TTATATCCGG
1 TTATATCCGG
50685167 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:50688383 original size:38 final size:38
Alignment explanation
Indices: 50688325--50688434 Score: 177
Period size: 38 Copynumber: 2.9 Consensus size: 38
50688315 TCAAACATGT
* *
50688325 ACTGGGCC-ATAGCCCTTTTCATATTTCATATTTCATAAC
1 ACTGGGCCGA-AG-CCTTTTCAAATTTCATATTACATAAC
50688364 ACTGGGCCGAAGCCTTTTCAAATTTCATATTACATAAC
1 ACTGGGCCGAAGCCTTTTCAAATTTCATATTACATAAC
50688402 ACTGGGCCGAAGCCTTTTCAAATTTCATATTAC
1 ACTGGGCCGAAGCCTTTTCAAATTTCATATTAC
50688435 TAGGCCGAAG
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
38 57 0.84
39 10 0.15
40 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.35
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCAAATTTCATATTACATAAC
Found at i:50688389 original size:31 final size:31
Alignment explanation
Indices: 50688348--50688449 Score: 105
Period size: 38 Copynumber: 3.1 Consensus size: 31
50688338 CCTTTTCATA
*
50688348 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
50688379 TTTCAAATTTCATATTACATAACACTGGGCCGAAGCCT
1 TTTC-AA----AT-TT-CATAACACTGGGCCGAAGCCT
** *
50688417 TTTCAAATTTCATATTACTAGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
50688448 TT
1 TT
50688450 ACTGTAAACG
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
31 24 0.40
32 3 0.05
33 2 0.03
36 2 0.03
37 4 0.07
38 25 0.42
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:50688676 original size:27 final size:27
Alignment explanation
Indices: 50688646--50688753 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
50688636 GTAAATCTAC
50688646 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
50688673 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
50688699 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
50688729 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
50688754 ACATATTGAG
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.02
27 40 0.61
28 7 0.11
29 17 0.26
30 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:50688766 original size:27 final size:27
Alignment explanation
Indices: 50688736--50688874 Score: 151
Period size: 27 Copynumber: 5.2 Consensus size: 27
50688726 TGTAAATCAG
*
50688736 GGGTATTTTGGTAATTTTACATATTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
* * *
50688763 GGGTATTTCGGTAATTTCACAAA--CA
1 GGGTATTTTGGTAATTTTACAAATTGA
*
50688788 GTGGTATTTTGGTAATTTTACAAACT-A
1 G-GGTATTTTGGTAATTTTACAAATTGA
50688815 GGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAATTGA
** *
50688843 GGGTATTTCT-GTAATTTTGTAAATCGA
1 GGGTATTT-TGGTAATTTTACAAATTGA
50688870 GGGTA
1 GGGTA
50688875 AAATAGTAAT
Statistics
Matches: 96, Mismatches: 10, Indels: 12
0.81 0.08 0.10
Matches are distributed among these distances:
25 2 0.02
26 20 0.21
27 71 0.74
28 3 0.03
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATTGA
Found at i:50688799 original size:53 final size:53
Alignment explanation
Indices: 50688737--50688838 Score: 152
Period size: 53 Copynumber: 1.9 Consensus size: 53
50688727 GTAAATCAGG
* *
50688737 GGTATTTTGGTAATTTTACATA-TTGAGGGTATTTCGGTAATTTCACAAACAGT
1 GGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAACAGT
* *
50688790 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAA
50688839 TTGAGGGTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
53 42 0.95
54 2 0.05
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (53 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACAGT
Found at i:50688883 original size:27 final size:26
Alignment explanation
Indices: 50688853--50689117 Score: 289
Period size: 27 Copynumber: 9.8 Consensus size: 26
50688843 GGGTATTTCT
*
50688853 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAA-A
*
50688880 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAA-A
* * *
50688907 GTAATTCTATAAATCGACGGTAAAAC
1 GTAATTCTGTAAATCGAGGGTAAAAA
50688933 GATAACTT-TGTAAATCGAGGGTAAAACA
1 G-TAA-TTCTGTAAATCGAGGGTAAAA-A
* *
50688961 GTAATTCTGTAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAA-A
* *
50688988 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAA-A
*
50689015 GTAATTCTGTAAATCGAGGGTAAAAC
1 GTAATTCTGTAAATCGAGGGTAAAAA
* *
50689041 GATAATTTTGTAAATCGAGGGTAAAACG
1 G-TAATTCTGTAAATCGAGGGTAAAA-A
* * *
50689069 GTAATTATGTAAATCGGGGGTAAAAC
1 GTAATTCTGTAAATCGAGGGTAAAAA
*
50689095 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTCTGTAAATCGAGGGTA
50689118 CTTTGGTAAT
Statistics
Matches: 205, Mismatches: 26, Indels: 14
0.84 0.11 0.06
Matches are distributed among these distances:
26 5 0.02
27 196 0.96
28 4 0.02
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (26 bp):
GTAATTCTGTAAATCGAGGGTAAAAA
Found at i:50689128 original size:54 final size:54
Alignment explanation
Indices: 50688853--50689117 Score: 354
Period size: 54 Copynumber: 4.9 Consensus size: 54
50688843 GGGTATTTCT
* * * *
50688853 GTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACA
* *
50688907 GTAATTCTATAAATCGACGGTAAAACGATAACTT-TGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAA-TTCTGTAAATCGAGGGTAAAACA
* * * * *
50688961 GTAATTCTGTAAATCAAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACA
* *
50689015 GTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACA
* * *
50689069 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
50689118 CTTTGGTAAT
Statistics
Matches: 187, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.01
54 182 0.97
55 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACA
Found at i:50689130 original size:81 final size:81
Alignment explanation
Indices: 50688854--50689117 Score: 361
Period size: 81 Copynumber: 3.3 Consensus size: 81
50688844 GGTATTTCTG
* ** * *
50688854 TAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAA
1 TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTATATAA
*
50688919 ATCGACGGTAAAACGA
66 ATCGAGGGTAAAACGA
* *
50688935 TAACTT-TGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATGGTAATTTTATA
1 TAA-TTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTATATA
50688999 AATCGAGGGTAAAAC-A
65 AATCGAGGGTAAAACGA
* * * * *
50689015 GTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTA
1 -TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTATATA
*
50689080 AATCGGGGGTAAAACGA
65 AATCGAGGGTAAAACGA
*
50689097 TAATTCTGTAAATCGGGGGTA
1 TAATTCTGTAAATCGAGGGTA
50689118 CTTTGGTAAT
Statistics
Matches: 166, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
80 3 0.02
81 160 0.96
82 3 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.29
Consensus pattern (81 bp):
TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTATATAA
ATCGAGGGTAAAACGA
Found at i:50689144 original size:27 final size:27
Alignment explanation
Indices: 50689123--50689212 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
50689113 GGGTACTTTG
*
50689123 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
50689150 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
50689177 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
50689204 GTAATTTTA
1 GTAATTTTA
50689213 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:50689164 original size:54 final size:54
Alignment explanation
Indices: 50689106--50689212 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
50689096 ATAATTCTGT
* * *
50689106 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
50689160 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
50689213 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:50689226 original size:27 final size:27
Alignment explanation
Indices: 50689123--50689227 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
50689113 GGGTACTTTG
* *
50689123 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
50689150 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
50689177 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
50689204 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
50689228 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:50702597 original size:41 final size:41
Alignment explanation
Indices: 50702552--50702669 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
50702542 TGAAAGATAA
50702552 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
50702593 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50702623 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50702664 ATGTAG
1 ATGTAG
50702670 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:50702608 original size:71 final size:71
Alignment explanation
Indices: 50702520--50702683 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50702510 GAGATGTATC
50702520 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50702585 AGGACA
66 AGGACA
50702591 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50702656 AGGACA
66 AGGACA
50702662 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
50702684 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:50716584 original size:2 final size:2
Alignment explanation
Indices: 50716577--50716607 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
50716567 GAGACTAGTC
50716577 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50716608 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50716696 original size:15 final size:16
Alignment explanation
Indices: 50716660--50716689 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
50716650 CACATATCTT
50716660 TATTTCATTATATCAA
1 TATTTCATTATATCAA
50716676 TATTTCA-TATATCA
1 TATTTCATTATATCA
50716690 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:50723284 original size:46 final size:46
Alignment explanation
Indices: 50723215--50723389 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
50723205 TGTAACCCGC
50723215 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* * *
50723261 CCATAAGTGAACTTGGACACAACTCAACGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGC-A--T
* *** * * *
50723307 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
50723354 CCATAAGTAAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
50723390 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 63 0.61
47 28 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:50723335 original size:93 final size:93
Alignment explanation
Indices: 50723223--50723394 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
50723213 GCCCATAAGT
* * * *
50723223 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTTGGACACAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTAAACTCGGACACAACTCAA
50723288 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
50723316 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTAAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTAAACTCGGACACAACTCAA
*
50723381 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
50723395 CAAATATTCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTAAACTCGGACACAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:50737546 original size:40 final size:40
Alignment explanation
Indices: 50737502--50737589 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
50737492 TCGCTCGAAA
* * *
50737502 GCCTTCGGGACATAGCCCGG-TTATAATAGCTCGCACAAAT
1 GCCTTCGGGACATAACCCGGATT-TAAGAACTCGCACAAAT
* *
50737542 GCCTTCGGGACTTAACCCGGATTTAGGAACTCGCACAAAT
1 GCCTTCGGGACATAACCCGGATTTAAGAACTCGCACAAAT
50737582 GCCTTCGG
1 GCCTTCGG
50737590 ATCTTAGTCC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 40 0.95
41 2 0.05
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
GCCTTCGGGACATAACCCGGATTTAAGAACTCGCACAAAT
Found at i:50747469 original size:40 final size:40
Alignment explanation
Indices: 50747422--50747509 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
50747412 TCGCTCGAAA
* * *
50747422 GCCTTCGGGACATAGCCCGG-TTATAATAGCTCGCACAAAT
1 GCCTTCGGGACATAACCCGGATT-TAAGAACTCGCACAAAT
* * *
50747462 GCGTTCGGGACTTAACCCGGATTTAGGAACTCGCACAAAT
1 GCCTTCGGGACATAACCCGGATTTAAGAACTCGCACAAAT
50747502 GCCTTCGG
1 GCCTTCGG
50747510 ATCTTAGTCT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 38 0.95
41 2 0.05
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
GCCTTCGGGACATAACCCGGATTTAAGAACTCGCACAAAT
Found at i:50751818 original size:40 final size:39
Alignment explanation
Indices: 50751761--50751941 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 39
50751751 TGAATGATAC
* * ** * *
50751761 CCGGGCTAAGTCTCGAAGGCATTTATGCTACTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAATTG-TTATAT
* *
50751801 TCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGC-AATTGTTATAT
*
50751841 CCGGGCTAAGACCGGAAGGCATTCGTGCGAATTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGC-AATTGTTATAT
* *** *
50751881 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAA-TTGTTATAT
*
50751921 CCGGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
50751942 ATTGTGCTTG
Statistics
Matches: 121, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 117 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAATTGTTATAT
Found at i:50751958 original size:80 final size:80
Alignment explanation
Indices: 50751761--50751968 Score: 213
Period size: 80 Copynumber: 2.6 Consensus size: 80
50751751 TGAATGATAC
* * ** * * * *
50751761 CCGGGCTAAGTCTCGAAGGCATTTATGCTACTGATTATATTCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAATGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** *
50751826 TGCGAGTTGTTATAT
66 TGCAAGTTACCAAAT
* * *
50751841 CCGGGCTAAGACCGGAAGGCATTCGTGCGAATTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAATGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
50751906 TGCAAGTTACCAAAT
66 TGCAAGTTACCAAAT
* ***
50751921 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAATGGTTATATCCGGGCTAA
50751969 ATTTCGAAGA
Statistics
Matches: 105, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
79 6 0.06
80 96 0.91
81 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAATGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:50751963 original size:40 final size:40
Alignment explanation
Indices: 50751795--50751968 Score: 208
Period size: 40 Copynumber: 4.4 Consensus size: 40
50751785 ATGCTACTGA
*
50751795 TTATATTCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* *
50751835 TTATATCCGGGCTAAGACCGGAAGGCATTCGTGCGAATTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * *
50751875 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
** * * ** *
50751915 CCAAATCCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG
50751955 TTATATCC-GGCTAA
1 TTATATCCGGGCTAA
50751969 ATTTCGAAGA
Statistics
Matches: 113, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 5 0.04
40 105 0.93
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:50759766 original size:40 final size:39
Alignment explanation
Indices: 50759711--50759912 Score: 226
Period size: 40 Copynumber: 5.1 Consensus size: 39
50759701 TGAATGATAC
* *
50759711 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
*
50759751 CCGGGCTAAGACCCGAAGGCATTCGTGCTAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTTATAT
* * *
50759791 CCGGGCTAAGACCCGAAGGCATTCGTGCGAATTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGC-TAGTGTTATAT
* * * *
50759831 CCAGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGT--TATAT
* * *
50759871 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GTTATAT
50759911 CC
1 CC
50759913 AGCTAAATTC
Statistics
Matches: 139, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 3 0.02
40 131 0.94
41 3 0.02
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTTATAT
Found at i:50759908 original size:80 final size:80
Alignment explanation
Indices: 50759711--50759918 Score: 249
Period size: 80 Copynumber: 2.6 Consensus size: 80
50759701 TGAATGATAC
* * * * *
50759711 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCAGGCTAAGACCCGAAGGCATTCG
* *** *
50759776 TGCTAGTTGTTATAT
66 TGCAAGTTACCAAAT
* * * *
50759791 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAATTGTTATATCCAGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCAGGCTAAGACCCGAAGGCATTC
50759855 GTGCAAGTTACCAAAT
65 GTGCAAGTTACCAAAT
* *
50759871 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCA-GCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCAGGCTAA
50759919 ATTCTGAAGA
Statistics
Matches: 107, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 7 0.07
80 97 0.91
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCAGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:50767508 original size:24 final size:24
Alignment explanation
Indices: 50767478--50767696 Score: 375
Period size: 24 Copynumber: 9.1 Consensus size: 24
50767468 GAATGTGACT
* *
50767478 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
50767502 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
50767526 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
50767550 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
50767574 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
50767598 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
50767622 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
50767646 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
50767670 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
50767694 ATA
1 ATA
50767697 TGGTCTTTGC
Statistics
Matches: 190, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 190 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:50775561 original size:39 final size:40
Alignment explanation
Indices: 50775513--50775657 Score: 179
Period size: 39 Copynumber: 3.6 Consensus size: 40
50775503 AATGTTCGAG
50775513 TGATA-CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
*
50775551 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAG-T-TA
* * *
50775592 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
50775632 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAGTCCCGAAGGC
50775658 GTTTGAACGA
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
38 5 0.05
39 30 0.32
40 23 0.25
41 17 0.18
42 18 0.19
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:50783567 original size:39 final size:40
Alignment explanation
Indices: 50783520--50783661 Score: 164
Period size: 39 Copynumber: 3.6 Consensus size: 40
50783510 AATGTTCGAG
50783520 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
50783559 TGATATCCGGGCTAAG-CCCGAAGG-AATTGTGTAAATTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* * *
50783597 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
50783637 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAGTCCCGAAGG
50783662 TGTTTGAACG
Statistics
Matches: 85, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
38 25 0.29
39 32 0.38
40 28 0.33
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:50792106 original size:30 final size:30
Alignment explanation
Indices: 50792054--50792111 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
50792044 CATGATCATG
* *
50792054 ACACATGGGCATGTAGCCTACCCATGTGTC
1 ACACACGGGCATGTAGACTACCCATGTGTC
* * *
50792084 ACACACGGGCATGTGGATTACCCGTGTG
1 ACACACGGGCATGTAGACTACCCATGTG
50792112 AAACATTGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (30 bp):
ACACACGGGCATGTAGACTACCCATGTGTC
Found at i:50797212 original size:40 final size:40
Alignment explanation
Indices: 50797153--50797360 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
50797143 CAATTGAATG
* * * * *
50797153 ATATCCGAGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
50797193 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
50797233 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
50797273 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
50797313 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
50797353 ATATCCGG
1 ATATCCGG
50797361 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 2 0.01
40 135 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:50797291 original size:80 final size:80
Alignment explanation
Indices: 50797195--50797360 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 80
50797185 TAGTAATTAT
* *
50797195 ATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGT-GACCACATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTCGACC-CATCCGGGCTAAGACCCGAAGGCA
*
50797258 TTCGTGCAAGTTGTTAA
64 TTCGTGCAAGTGGTTAA
* ** *
50797275 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
* *
50797340 CGTGCATGTGGTTAT
66 CGTGCAAGTGGTTAA
50797355 ATCCGG
1 ATCCGG
50797361 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 2 0.03
80 71 0.95
81 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:50809469 original size:147 final size:147
Alignment explanation
Indices: 50809198--50809486 Score: 445
Period size: 147 Copynumber: 2.0 Consensus size: 147
50809188 CGCTAACAGG
*
50809198 TATAAACCAATTTAAATAAATCCCCATTTAAAGATAAAACTGAAAACGACCGAATTACATAATAT
1 TATAAACCAATTTAAATAAATCCCCAATTAAAGATAAAACTGAAAACGACCGAATTACATAATAT
* * * *
50809263 TTAACCCAAATAAAGCTACCATAGTTTAAAGGTCCAGTACGTAATATAGTAGTGATGTGGCCTTT
66 TTAACCCAAATAAAGCTACCATAATTTAAAGATCCAGTACATAATATAATAGTGATGTGGCCTTT
50809328 CCCGAGTCCCTCGGTGA
131 CCCGAGTCCCTCGGTGA
* * * *
50809345 TATAAACCAATTTCAATAAATCCCTAATTAAAGATAAAACTTAAAACGGA-TGAATTACATAATA
1 TATAAACCAATTTAAATAAATCCCCAATTAAAGATAAAACTGAAAAC-GACCGAATTACATAATA
* * *
50809409 TTTAACGCATATAAAGCTACCATAATTTAAAGATCCAGTACATAATATAATAGTGGTGTGGCCTT
65 TTTAACCCAAATAAAGCTACCATAATTTAAAGATCCAGTACATAATATAATAGTGATGTGGCCTT
*
50809474 TCCTGAGTCCCTC
130 TCCCGAGTCCCTC
50809487 ACAGTACTGA
Statistics
Matches: 128, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
147 126 0.98
148 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.29
Consensus pattern (147 bp):
TATAAACCAATTTAAATAAATCCCCAATTAAAGATAAAACTGAAAACGACCGAATTACATAATAT
TTAACCCAAATAAAGCTACCATAATTTAAAGATCCAGTACATAATATAATAGTGATGTGGCCTTT
CCCGAGTCCCTCGGTGA
Found at i:50813287 original size:22 final size:23
Alignment explanation
Indices: 50813248--50813290 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
50813238 GAGATTCTAC
*
50813248 CCGTCCATCCTCTACACTCCACT
1 CCGTCCAACCTCTACACTCCACT
50813271 CCGTCCAACC-CTACACTCCA
1 CCGTCCAACCTCTACACTCCA
50813291 TGTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.53, G:0.05, T:0.21
Consensus pattern (23 bp):
CCGTCCAACCTCTACACTCCACT
Found at i:50822380 original size:46 final size:46
Alignment explanation
Indices: 50822149--50822376 Score: 429
Period size: 46 Copynumber: 5.0 Consensus size: 46
50822139 AGTTAAATAT
50822149 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
50822195 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
50822241 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
50822287 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
50822333 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
50822377 AGATGTATAT
Statistics
Matches: 179, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 179 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:50822434 original size:47 final size:47
Alignment explanation
Indices: 50822380--50822490 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
50822370 ATGTATGAGA
* * *
50822380 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
50822427 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
50822474 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
50822491 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:50825106 original size:40 final size:40
Alignment explanation
Indices: 50825051--50825314 Score: 429
Period size: 40 Copynumber: 6.6 Consensus size: 40
50825041 CTCGACGATG
*
50825051 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
*
50825091 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
50825131 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* **
50825171 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGACGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
50825211 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
50825251 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
50825291 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTTCCGAAGAGCA
50825315 ATCATGCTGG
Statistics
Matches: 214, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:50826042 original size:40 final size:40
Alignment explanation
Indices: 50825978--50826113 Score: 116
Period size: 40 Copynumber: 3.4 Consensus size: 40
50825968 AATGGTATCT
* ** *
50825978 GGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTACTAAATCC
1 GGGCTAATTCCCGAAGGCAATTGTGCGAGTCACTAAATCC
* *
50826018 GGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAA-CC
1 GGGCTAATTCCCGAAGGCAATTGTGCGAGTCACTA-AATCC
* * * * *
50826058 GGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATATCC
1 GGGCTAAT-TCCCGAAGGCAATTGTGCGAGTCACTAAATCC
* *
50826098 -GGTTAAATCCCGAAGG
1 GGGCTAATTCCCGAAGG
50826114 TACGTGATTC
Statistics
Matches: 76, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
39 14 0.18
40 60 0.79
41 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
GGGCTAATTCCCGAAGGCAATTGTGCGAGTCACTAAATCC
Found at i:50828831 original size:46 final size:46
Alignment explanation
Indices: 50828780--50828961 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
50828770 AGTTAAATAT
50828780 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
50828826 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
50828872 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
50828918 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
50828962 AGATGTATAT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:50829019 original size:47 final size:47
Alignment explanation
Indices: 50828965--50829075 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
50828955 ATGTATGAGA
* * *
50828965 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
50829012 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
50829059 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
50829076 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:50832194 original size:39 final size:39
Alignment explanation
Indices: 50832137--50832214 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
50832127 ATACATACAA
50832137 CTTTCATATTCCTCAATAAAACATCAAAGAATAAACATG
1 CTTTCATATTCCTCAATAAAACATCAAAGAATAAACATG
*
50832176 CTTTCATATTCCTTAATAAAACATCAAAGAATAAACATG
1 CTTTCATATTCCTCAATAAAACATCAAAGAATAAACATG
50832215 GCACACATGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.19, G:0.05, T:0.29
Consensus pattern (39 bp):
CTTTCATATTCCTCAATAAAACATCAAAGAATAAACATG
Done.