Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 176 of 378
Found at i:51189346 original size:80 final size:80
Alignment explanation
Indices: 51189234--51189426 Score: 219
Period size: 80 Copynumber: 2.4 Consensus size: 80
51189224 GGATATAACG
* * * * * *
51189234 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCAC-AATTGCCTTCGGGAAT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACGAA-TGCCTTCGGGAAT
51189298 T-AGCCCGGATTTAGTA
65 TGA-CCCGGATTTAGTA
* * * *
51189314 ACTCGCACGAATGCCTTCGGAACTTAACCCGGTTTTGGTAACTCGCACGAATGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGAATT
*
51189379 GACCCGGATTTAGTC
66 GACCCGGATTTAGTA
* * *
51189394 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGG
51189427 ACACCATTCG
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
80 66 0.70
81 28 0.30
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGAATT
GACCCGGATTTAGTA
Found at i:51205214 original size:24 final size:24
Alignment explanation
Indices: 51205187--51205233 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
51205177 AAGATTTAGT
**
51205187 ATTTATTAGTATAATATATTTGAC
1 ATTTATTAACATAATATATTTGAC
*
51205211 ATTTATTAACATAATTTATTTGA
1 ATTTATTAACATAATATATTTGA
51205234 TTTACGAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.51
Consensus pattern (24 bp):
ATTTATTAACATAATATATTTGAC
Found at i:51209060 original size:17 final size:17
Alignment explanation
Indices: 51209039--51209140 Score: 69
Period size: 17 Copynumber: 6.0 Consensus size: 17
51209029 CTGTTTATAT
*
51209039 AAAATAATAGTTCATAC
1 AAAATAACAGTTCATAC
* * * *
51209056 CAAATGACAGCTCATGC
1 AAAATAACAGTTCATAC
* * *
51209073 AAAATAATATTTCATAT
1 AAAATAACAGTTCATAC
* **
51209090 GAAATATTAGTTCATAC
1 AAAATAACAGTTCATAC
** * *
51209107 TGAATAACAATTCATGC
1 AAAATAACAGTTCATAC
51209124 AAAATAACAGTTCATAC
1 AAAATAACAGTTCATAC
51209141 TTCATTATAA
Statistics
Matches: 59, Mismatches: 26, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
17 59 1.00
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.29
Consensus pattern (17 bp):
AAAATAACAGTTCATAC
Found at i:51209101 original size:51 final size:51
Alignment explanation
Indices: 51209035--51209139 Score: 129
Period size: 51 Copynumber: 2.1 Consensus size: 51
51209025 ATATCTGTTT
* * * *
51209035 ATATAAAATAATAGTTCATACCAAATGACAGCTCATGCAAAATAATATTTC
1 ATATAAAATAATAGTTCATACCAAATAACAACTCATGCAAAATAACAGTTC
* * ** *
51209086 ATATGAAATATTAGTTCATACTGAATAACAATTCATGCAAAATAACAGTTC
1 ATATAAAATAATAGTTCATACCAAATAACAACTCATGCAAAATAACAGTTC
51209137 ATA
1 ATA
51209140 CTTCATTATA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.30
Consensus pattern (51 bp):
ATATAAAATAATAGTTCATACCAAATAACAACTCATGCAAAATAACAGTTC
Found at i:51209797 original size:18 final size:18
Alignment explanation
Indices: 51209774--51209811 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
51209764 TAGTTTGGCA
* *
51209774 AATACAATTCACCATATT
1 AATACAAATCACCAAATT
51209792 AATACAAATCACCAAATT
1 AATACAAATCACCAAATT
51209810 AA
1 AA
51209812 CACAGTTCGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.53, C:0.21, G:0.00, T:0.26
Consensus pattern (18 bp):
AATACAAATCACCAAATT
Found at i:51211841 original size:11 final size:11
Alignment explanation
Indices: 51211825--51211853 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
51211815 AGGGAATGAA
51211825 GAGAGAAAAGT
1 GAGAGAAAAGT
51211836 GAGAGAAAAGT
1 GAGAGAAAAGT
51211847 GA-AGAAA
1 GAGAGAAA
51211854 TAAATGAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.59, C:0.00, G:0.34, T:0.07
Consensus pattern (11 bp):
GAGAGAAAAGT
Found at i:51219259 original size:45 final size:45
Alignment explanation
Indices: 51219182--51219425 Score: 224
Period size: 45 Copynumber: 5.3 Consensus size: 45
51219172 AGGTATAAGT
* * *
51219182 TATATATAATAATTAT-C-GGTTTTACTGACCAGTGCTGGGTACACA
1 TATATATAAT-ATT-TGCTGGTTTCACCGACCAGTGCTGGGCACACA
* * * *
51219227 TATATAAAATATTTCCTAGTTTCACCGCCCAGTGCTGGGCACACA
1 TATATATAATATTTGCTGGTTTCACCGACCAGTGCTGGGCACACA
* * * *
51219272 CATATATAATATTTGTTGGTTTCACCGACTAGTGCTGGACACACA
1 TATATATAATATTTGCTGGTTTCACCGACCAGTGCTGGGCACACA
* * *
51219317 TATATATAATAATAATTGTCT-GTGTCACCGACCAGTGCTAGGTACACGTA
1 TATATATAAT-AT--TTG-CTGGTTTCACCGACCAGTGCTGGGCACAC--A
* * * *
51219367 TATATATAATATTTGTTGGTTTCACTGAGCAATGCTGGGCACACA
1 TATATATAATATTTGCTGGTTTCACCGACCAGTGCTGGGCACACA
*
51219412 CATATATAATATTT
1 TATATATAATATTT
51219426 TCCAGTCACA
Statistics
Matches: 161, Mismatches: 29, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
43 1 0.01
44 4 0.02
45 92 0.57
46 3 0.02
47 23 0.14
48 24 0.15
49 3 0.02
50 11 0.07
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (45 bp):
TATATATAATATTTGCTGGTTTCACCGACCAGTGCTGGGCACACA
Found at i:51219388 original size:95 final size:93
Alignment explanation
Indices: 51219222--51219422 Score: 248
Period size: 95 Copynumber: 2.2 Consensus size: 93
51219212 AGTGCTGGGT
* * *
51219222 ACACATATATAA-AAT-ATT-TCCTAGTTTCACCGCCCAGTGCTGGGCACACACATATATAATAT
1 ACACATATATAATAATAATTGT-CT-GTGTCACCGACCAGTGCTAGGCACACACATATATAATAT
*
51219284 TTGTTGGTTTCACCGA-CTAGTGCTGGACAC
64 TTGTTGGTTTCACCGAGC-AATGCTGGACAC
* * *
51219314 ACATATATATAATAATAATTGTCTGTGTCACCGACCAGTGCTAGGTACACGTATATATATAATAT
1 ACACATATATAATAATAATTGTCTGTGTCACCGACCAGTGCTAGGCACAC--ACATATATAATAT
* *
51219379 TTGTTGGTTTCACTGAGCAATGCTGGGCAC
64 TTGTTGGTTTCACCGAGCAATGCTGGACAC
51219409 ACACATATATAATA
1 ACACATATATAATA
51219423 TTTTCCAGTC
Statistics
Matches: 93, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
92 11 0.12
93 25 0.27
94 5 0.05
95 51 0.55
96 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (93 bp):
ACACATATATAATAATAATTGTCTGTGTCACCGACCAGTGCTAGGCACACACATATATAATATTT
GTTGGTTTCACCGAGCAATGCTGGACAC
Found at i:51227964 original size:25 final size:25
Alignment explanation
Indices: 51227936--51227983 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
51227926 AGAAACATGG
51227936 CTAAAGGAACCAAATACTCACTAGC
1 CTAAAGGAACCAAATACTCACTAGC
51227961 CTAAAGGAACCAAATACTCACTA
1 CTAAAGGAACCAAATACTCACTA
51227984 TCATTTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.46, C:0.27, G:0.10, T:0.17
Consensus pattern (25 bp):
CTAAAGGAACCAAATACTCACTAGC
Found at i:51230810 original size:15 final size:15
Alignment explanation
Indices: 51230790--51230839 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
51230780 TAGGTAAGAT
51230790 AAACATAACACATCC
1 AAACATAACACATCC
*
51230805 AAACAT-A-AGAT--
1 AAACATAACACATCC
51230816 AAACATAACACATCC
1 AAACATAACACATCC
*
51230831 CAACATAAC
1 AAACATAAC
51230840 TTGGCCAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
11 6 0.21
12 1 0.04
13 6 0.21
14 1 0.04
15 14 0.50
ACGTcount: A:0.56, C:0.28, G:0.02, T:0.14
Consensus pattern (15 bp):
AAACATAACACATCC
Found at i:51230813 original size:26 final size:26
Alignment explanation
Indices: 51230784--51230838 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
51230774 ACAAAATAGG
51230784 TAAGATAAACATAACACATCCAAACA
1 TAAGATAAACATAACACATCCAAACA
*
51230810 TAAGATAAACATAACACATCCCAACA
1 TAAGATAAACATAACACATCCAAACA
51230836 TAA
1 TAA
51230839 CTTGGCCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.56, C:0.24, G:0.04, T:0.16
Consensus pattern (26 bp):
TAAGATAAACATAACACATCCAAACA
Found at i:51232576 original size:14 final size:14
Alignment explanation
Indices: 51232557--51232586 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
51232547 TGTTCGGTTG
*
51232557 AATTTTTTAAAAAT
1 AATTTTTGAAAAAT
51232571 AATTTTTGAAAAAT
1 AATTTTTGAAAAAT
51232585 AA
1 AA
51232587 AAATGAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (14 bp):
AATTTTTGAAAAAT
Found at i:51233211 original size:26 final size:27
Alignment explanation
Indices: 51233175--51233225 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
51233165 TGTTTTTCAT
*
51233175 TTTTTTTAAAATGAAAATG-AAAATTA
1 TTTTTTGAAAATGAAAATGTAAAATTA
51233201 TTTTTTGAAAATGAAAATGTAAAAT
1 TTTTTTGAAAATGAAAATGTAAAAT
51233226 AAAACTAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (27 bp):
TTTTTTGAAAATGAAAATGTAAAATTA
Found at i:51234641 original size:3 final size:3
Alignment explanation
Indices: 51234617--51234676 Score: 90
Period size: 3 Copynumber: 20.7 Consensus size: 3
51234607 TCTATGTTAG
51234617 TTA TT- TTA TT- TTA GTT- TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
51234660 TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
51234677 TTAATTGATT
Statistics
Matches: 53, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
2 6 0.11
3 45 0.85
4 2 0.04
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:51237104 original size:16 final size:18
Alignment explanation
Indices: 51237083--51237119 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
51237073 AAATTTTTTT
*
51237083 AAAATA-TAATAA-ATTA
1 AAAATACTAAAAATATTA
51237099 AAAATACTAAAAATATTA
1 AAAATACTAAAAATATTA
51237117 AAA
1 AAA
51237120 TAAATATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAATACTAAAAATATTA
Found at i:51237121 original size:17 final size:16
Alignment explanation
Indices: 51237080--51237125 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
51237070 TATAAATTTT
51237080 TTTAAAATATAATAAA
1 TTTAAAATATAATAAA
*
51237096 TTAAAAATACTAA-AAA
1 TTTAAAATA-TAATAAA
51237112 TATTAAAATA-AATA
1 T-TTAAAATATAATA
51237126 TTTCCCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 2 0.08
16 13 0.52
17 10 0.40
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
TTTAAAATATAATAAA
Found at i:51237299 original size:19 final size:19
Alignment explanation
Indices: 51237275--51237322 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
51237265 ATAACAACAT
*
51237275 AATAGTGAAATGGTAGCAA
1 AATAGTGAAATGATAGCAA
51237294 AATAGTGAAATGATAGCAA
1 AATAGTGAAATGATAGCAA
51237313 AATAGTGAAA
1 AATAGTGAAA
51237323 AAAAGAAGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.52, C:0.04, G:0.23, T:0.21
Consensus pattern (19 bp):
AATAGTGAAATGATAGCAA
Found at i:51239028 original size:18 final size:19
Alignment explanation
Indices: 51238995--51239030 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
51238985 AATGACGAGG
51238995 AAAACAAAATATGCATAAC
1 AAAACAAAATATGCATAAC
*
51239014 AAAACTAAA-ATGCATAA
1 AAAACAAAATATGCATAA
51239031 AATAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.14, G:0.06, T:0.17
Consensus pattern (19 bp):
AAAACAAAATATGCATAAC
Found at i:51241685 original size:2 final size:2
Alignment explanation
Indices: 51241678--51241720 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
51241668 GAAACCAATC
*
51241678 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51241720 T
1 T
51241721 CAAATCAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:51241877 original size:20 final size:20
Alignment explanation
Indices: 51241840--51241879 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
51241830 TAGATAAGCT
*
51241840 TTTATATTTTTATTAAATAA
1 TTTATATTTCTATTAAATAA
51241860 TTTATA-TTCTATTCAAATAA
1 TTTATATTTCTATT-AAATAA
51241880 GTTCTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTATATTTCTATTAAATAA
Found at i:51246708 original size:50 final size:50
Alignment explanation
Indices: 51246640--51246968 Score: 318
Period size: 46 Copynumber: 6.9 Consensus size: 50
51246630 ATGGGGTAAG
* * *
51246640 GTGCCAATACCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
* * *
51246690 GTGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGCATATCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
* *
51246740 GTGCCGATGCCATGTCCCAGACATGGTCTTACACT-G---ACACATCT-T
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
* *
51246785 GTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ACATCTC-
1 GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
* * * * *
51246831 GAGGCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCT--CATCTCA
1 G-TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
** * *
51246878 ACGCCGATGCCATGTCCCAGGCATGGTCTTACACTAG--CTCACATA-AT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
*
51246925 GTGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACACA
1 GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACA
51246969 AGTGACCCTA
Statistics
Matches: 240, Mismatches: 24, Indels: 32
0.81 0.08 0.11
Matches are distributed among these distances:
44 10 0.04
45 18 0.08
46 80 0.33
47 26 0.11
48 26 0.11
49 1 0.00
50 79 0.33
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (50 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
Found at i:51246933 original size:94 final size:93
Alignment explanation
Indices: 51246650--51246963 Score: 334
Period size: 94 Copynumber: 3.3 Consensus size: 93
51246640 GTGCCAATAC
* * * *
51246650 CATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCTGTGCTGATGCCATGTCCCAAACATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCT--CATCTCT-AGCCGATGCCATGTCCCAGACATG
* *
51246715 GTCTTACACTAGCTCTCGCATATCTGTGCCGATG
63 GTCTTACACTAG--CTCACATATGTG-GCCGATG
* * *
51246749 CCATGTCCCAGACATGGTCTTACACT-G-ACACATCTTGTAGCCGATG-CATGTCCCAGACAT-G
1 -CATGTCCCAGACATGGTCTTACACTAGCTCTCATC-TCTAGCCGATGCCATGTCCCAGACATGG
* * * *
51246810 TCTTACACTGGCTTACATCTCGAGGCCGATG
64 TCTTACACTAGCTCACATAT-GTGGCCGATG
* * * *
51246841 CATGTCCCAAACAT-GTCTTACACTGGCTCTCATCTCAACGCCGATGCCATGTCCCAGGCATGGT
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCTA-GCCGATGCCATGTCCCAGACATGGT
51246905 CTTACACTAGCTCACATAATGTGGCCGATG
65 CTTACACTAGCTCACAT-ATGTGGCCGATG
51246935 CATGTCCCAGACAT-GTCTTACACTAGCTC
1 CATGTCCCAGACATGGTCTTACACTAGCTC
51246964 ACACAAGTGA
Statistics
Matches: 181, Mismatches: 25, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
90 10 0.06
91 16 0.09
92 25 0.14
93 14 0.08
94 64 0.35
95 14 0.08
96 9 0.05
97 2 0.01
98 1 0.01
99 1 0.01
100 25 0.14
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (93 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCTAGCCGATGCCATGTCCCAGACATGGTC
TTACACTAGCTCACATATGTGGCCGATG
Found at i:51248748 original size:22 final size:22
Alignment explanation
Indices: 51248701--51248747 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
51248691 AGATTTAGGA
51248701 TTTTAAAAACAATTTTATTTTC
1 TTTTAAAAACAATTTTATTTTC
51248723 TTTTAAAAACAATTTTA-TTTC
1 TTTTAAAAACAATTTTATTTTC
51248744 TTTT
1 TTTT
51248748 TCTTTAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTAAAAACAATTTTATTTTC
Found at i:51250852 original size:2 final size:2
Alignment explanation
Indices: 51250845--51250891 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
51250835 CACTAATGTT
* *
51250845 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51250887 TA TA T
1 TA TA T
51250892 GATTATTGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:51253643 original size:39 final size:39
Alignment explanation
Indices: 51253548--51253725 Score: 234
Period size: 39 Copynumber: 4.6 Consensus size: 39
51253538 AGGATTTTAA
* * * * *
51253548 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGATTTATGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATAT
* *
51253586 CCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
51253625 CCGGGCTAAGTCCCGAAGGCATTCCTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
51253664 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
51253703 CCGAGCTAAGTTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
51253726 TGGGTTGGAA
Statistics
Matches: 124, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 19 0.15
39 102 0.82
40 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
Found at i:51260492 original size:39 final size:39
Alignment explanation
Indices: 51260437--51260621 Score: 291
Period size: 39 Copynumber: 4.7 Consensus size: 39
51260427 TGTGTGAGAT
51260437 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* * *
51260476 TTATATTCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
51260515 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* * *
51260554 TTATATCCGGGCTAAGTCCCAAAGGTATTCGTGCT-ATTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGA-TA
*
51260593 TTATATCCGGGCTAAGTTCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
51260622 TGGGTTGGAA
Statistics
Matches: 133, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
38 1 0.01
39 132 0.99
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
Found at i:51268280 original size:38 final size:39
Alignment explanation
Indices: 51268174--51268363 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
51268164 TGAATGATGT
* ** * *
51268174 CCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTG-CGAGTTACTA-AA
* * *
51268214 CCGGACTAAGAT-CCGAAGGCGTTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
51268253 TCCGGG-TAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
51268291 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
51268332 CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
51268364 CGTTATATCC
Statistics
Matches: 125, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
38 29 0.23
39 9 0.07
40 79 0.63
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:51276359 original size:40 final size:39
Alignment explanation
Indices: 51276194--51276377 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
51276184 AAATTGAATG
* * *
51276194 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
51276234 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
51276274 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
51276314 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
51276353 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
51276378 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:51276402 original size:80 final size:81
Alignment explanation
Indices: 51276234--51276422 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
51276224 GCTGGAAATT
* * * *
51276234 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
51276299 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
51276315 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
51276378 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
51276394 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
51276423 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:51278235 original size:18 final size:19
Alignment explanation
Indices: 51278212--51278253 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
51278202 CGAAAAAAAT
51278212 ATTTTTC-AAC-ATCTAAA
1 ATTTTTCAAACGATCTAAA
51278229 CATTTTTCAAACGATCTAAA
1 -ATTTTTCAAACGATCTAAA
51278249 ATTTT
1 ATTTT
51278254 ACATATTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.32
19 8 0.36
20 7 0.32
ACGTcount: A:0.38, C:0.17, G:0.02, T:0.43
Consensus pattern (19 bp):
ATTTTTCAAACGATCTAAA
Found at i:51279831 original size:92 final size:93
Alignment explanation
Indices: 51279720--51279889 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
51279710 GCCCATAAGT
* *
51279720 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51279785 CGAG-TCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
51279812 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51279877 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51279890 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 66 0.89
93 8 0.11
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51279886 original size:46 final size:46
Alignment explanation
Indices: 51279712--51279886 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
51279702 TGTAACCCGC
* * *
51279712 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51279758 CCATAAGTGAACTCGGACTCAACTCAACGAG-TCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
51279807 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
51279850 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51279887 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 6 0.05
46 83 0.75
47 7 0.06
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51282288 original size:29 final size:29
Alignment explanation
Indices: 51282249--51282336 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
51282239 CAAAGATAAC
*
51282249 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
51282278 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
51282307 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
51282337 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:51282307 original size:15 final size:15
Alignment explanation
Indices: 51282249--51282327 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
51282239 CAAAGATAAC
*
51282249 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
51282263 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
51282278 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
51282292 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
51282307 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
51282322 AAGAAA
1 AAGAAA
51282328 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:51282336 original size:15 final size:15
Alignment explanation
Indices: 51282260--51282336 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
51282250 AGAAAACCGA
51282260 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
51282275 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
51282289 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
51282303 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
51282319 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
51282334 ATA
1 ATA
51282337 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:51285358 original size:93 final size:93
Alignment explanation
Indices: 51285246--51285416 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
51285236 GCCCATAAGT
* *
51285246 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51285311 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
51285339 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
51285404 CGAGTTCGGATGC
66 CGAGCTCGGATGC
51285417 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:51285413 original size:46 final size:46
Alignment explanation
Indices: 51285238--51285413 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
51285228 TGTAACCCGC
* *
51285238 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
51285284 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
51285330 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
51285377 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
51285414 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:51287362 original size:33 final size:33
Alignment explanation
Indices: 51287298--51287362 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 33
51287288 GATACATTTG
* * ***
51287298 AGGCCAATTTGACTAAGTGTCAAATGGAACTAT
1 AGGCCAATTCGACTAAGTGCCAAACAAAACTAT
*
51287331 AGGCCAATTCGACTAAGTGCCGAACAAAACTA
1 AGGCCAATTCGACTAAGTGCCAAACAAAACTA
51287363 CAAGAGAACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (33 bp):
AGGCCAATTCGACTAAGTGCCAAACAAAACTAT
Found at i:51289757 original size:114 final size:114
Alignment explanation
Indices: 51289585--51289816 Score: 455
Period size: 114 Copynumber: 2.0 Consensus size: 114
51289575 GTAGGGTTTT
51289585 AAATATATCTTAGTACTGTTTACCCCTTAAATAGTCAAATAGCTAGCTGAATATATTTCATAGGT
1 AAATATATCTTAGTACTGTTTACCCCTTAAATAGTCAAATAGCTAGCTGAATATATTTCATAGGT
51289650 TTATAGATCGAGGTTTTAAGTTTGAATATCGGCGGCGTTGTTTCCTGAG
66 TTATAGATCGAGGTTTTAAGTTTGAATATCGGCGGCGTTGTTTCCTGAG
*
51289699 AAATATATCTTAGTTCTGTTTACCCCTTAAATAGTCAAATAGCTAGCTGAATATATTTCATAGGT
1 AAATATATCTTAGTACTGTTTACCCCTTAAATAGTCAAATAGCTAGCTGAATATATTTCATAGGT
51289764 TTATAGATCGAGGTTTTAAGTTTGAATATCGGCGGCGTTGTTTCCTGAG
66 TTATAGATCGAGGTTTTAAGTTTGAATATCGGCGGCGTTGTTTCCTGAG
51289813 AAAT
1 AAAT
51289817 CTTTTTATCG
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 117 1.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (114 bp):
AAATATATCTTAGTACTGTTTACCCCTTAAATAGTCAAATAGCTAGCTGAATATATTTCATAGGT
TTATAGATCGAGGTTTTAAGTTTGAATATCGGCGGCGTTGTTTCCTGAG
Found at i:51290031 original size:18 final size:18
Alignment explanation
Indices: 51290010--51290087 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 18
51290000 TACGGGTCCT
* *
51290010 CCTGCAAGTACAGATGCA
1 CCTGCAACTACAGATCCA
*
51290028 CCTGCAACTACGGATCCA
1 CCTGCAACTACAGATCCA
* * * *
51290046 CCTACAACAACTGATCCG
1 CCTGCAACTACAGATCCA
* * *
51290064 CCTACAAGTACAGAGCCA
1 CCTGCAACTACAGATCCA
51290082 CCTGCA
1 CCTGCA
51290088 GGTGATGTAG
Statistics
Matches: 47, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.32, C:0.36, G:0.17, T:0.15
Consensus pattern (18 bp):
CCTGCAACTACAGATCCA
Found at i:51292010 original size:81 final size:81
Alignment explanation
Indices: 51291880--51292074 Score: 223
Period size: 81 Copynumber: 2.4 Consensus size: 81
51291870 TCCCCACCTT
* * * * * * * * *
51291880 TAAAGAAAGAGAGTGAAGAAGCTTCCAAAAATGAAGTCGAAGCTCCTGAAGCCAACCCAGCTTCA
1 TAAAGAAAGATAGTGAAGAAGCTTGCAAAACTGAAATCAAAGATCCTGAAGCAAACCCACCATCA
*
51291945 CAAGAAGTTCCACCA-
66 CAAGAAGTTCAACCAG
* * *
51291960 TCGAAGAAAGATAGTGAAGAAGCTTGCAAAACTGAAATCAAAGATTCTGAAGCAAAGCCACCATC
1 T-AAAGAAAGATAGTGAAGAAGCTTGCAAAACTGAAATCAAAGATCCTGAAGCAAACCCACCATC
*
51292025 ACAAGAAGTTGAACCAG
65 ACAAGAAGTTCAACCAG
*
51292042 TAAAGAAAGATAGTGAACAAGCTTTG-AAAACTG
1 TAAAGAAAGATAGTGAAGAAGC-TTGCAAAACTG
51292075 TTGTCAAGGA
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
80 1 0.01
81 91 0.95
82 4 0.04
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.16
Consensus pattern (81 bp):
TAAAGAAAGATAGTGAAGAAGCTTGCAAAACTGAAATCAAAGATCCTGAAGCAAACCCACCATCA
CAAGAAGTTCAACCAG
Found at i:51296175 original size:46 final size:46
Alignment explanation
Indices: 51296108--51296282 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
51296098 TGTAACCCGC
*
51296108 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
51296154 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
51296204 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
51296247 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
51296283 ATGCTCAACC
Statistics
Matches: 112, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 3 0.03
46 63 0.56
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:51296228 original size:93 final size:93
Alignment explanation
Indices: 51296116--51296286 Score: 324
Period size: 93 Copynumber: 1.8 Consensus size: 93
51296106 GCCCATAAGT
*
51296116 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51296181 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
51296209 GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51296274 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51296287 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51298688 original size:30 final size:30
Alignment explanation
Indices: 51298644--51298732 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
51298634 CAAAGATAAC
51298644 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
51298673 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
51298703 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
51298733 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:51298692 original size:15 final size:15
Alignment explanation
Indices: 51298644--51298723 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
51298634 CAAAGATAAC
*
51298644 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
51298658 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
51298673 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
51298688 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
51298703 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
51298718 AAGAAA
1 AAGAAA
51298724 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:51298732 original size:15 final size:15
Alignment explanation
Indices: 51298655--51298732 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
51298645 AGAAAACCGA
51298655 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
51298670 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
51298684 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
51298699 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
51298715 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
51298730 ATA
1 ATA
51298733 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:51301795 original size:93 final size:93
Alignment explanation
Indices: 51301683--51301853 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
51301673 GCCCATAAGT
* *
51301683 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51301748 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
51301776 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51301841 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51301854 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51301850 original size:46 final size:46
Alignment explanation
Indices: 51301675--51301850 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
51301665 TGTAACCCGC
* * *
51301675 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51301721 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
51301771 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
51301814 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51301851 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51307760 original size:40 final size:40
Alignment explanation
Indices: 51307683--51307900 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
51307673 AAACCAAGTA
* *
51307683 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
51307722 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
51307762 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51307802 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
51307842 CCTTCAGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51307882 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51307901 TTATCATCCG
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 15 0.09
40 149 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51314840 original size:22 final size:20
Alignment explanation
Indices: 51314815--51314854 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
51314805 GGATTAAATA
51314815 AAAACCATAGGAATTTTTTTGC
1 AAAACCATA--AATTTTTTTGC
*
51314837 AAAACCCTAAATTTTTTT
1 AAAACCATAAATTTTTTT
51314855 ATGAACTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
22 8 0.47
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.40
Consensus pattern (20 bp):
AAAACCATAAATTTTTTTGC
Found at i:51314930 original size:14 final size:14
Alignment explanation
Indices: 51314913--51314942 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
51314903 TTAAACCTGG
51314913 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
51314927 ACCAATCCAATTCA
1 ACCAATCCAAATCA
51314941 AC
1 AC
51314943 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:51316956 original size:49 final size:49
Alignment explanation
Indices: 51316877--51317108 Score: 275
Period size: 49 Copynumber: 4.7 Consensus size: 49
51316867 TCTATTGTGA
*
51316877 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
51316926 GGTCGCATGTGTAGTACTAATTGCAGGCTACTATGCGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TT
* ** * * * **
51316977 GATCATGTGTGTAATACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* **
51317026 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACAAGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
51317076 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
51317109 TGCGTACTAG
Statistics
Matches: 151, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 74 0.49
50 40 0.26
51 37 0.25
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:51317073 original size:101 final size:98
Alignment explanation
Indices: 51316879--51317108 Score: 289
Period size: 100 Copynumber: 2.3 Consensus size: 98
51316869 TATTGTGAGG
* *
51316879 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* ***
51316944 AATTGCAGGCTACTATGCGTACCCGATAACTTTGA
66 AAGTGCAGGCTACTACAAGTACCCGATAA--TTGA
* * * ** *
51316979 TCATGTGTGTAATACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
51317044 TAAGTGCAGGCTACTACAAGTACCGGATAATTGG
65 TAAGTGCAGGCTACTACAAGTACCCGATAATTGA
* *
51317078 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
51317109 TGCGTACTAG
Statistics
Matches: 111, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
99 30 0.27
100 41 0.37
101 40 0.36
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACAAGTACCCGATAATTGA
Found at i:51330992 original size:30 final size:30
Alignment explanation
Indices: 51330956--51331015 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
51330946 TTTAAGAGTA
51330956 GATCATCCATAATTAAGTGGGGTTGCATGC
1 GATCATCCATAATTAAGTGGGGTTGCATGC
51330986 GATCATCCATAATTAAGTGGGGTTGCATGC
1 GATCATCCATAATTAAGTGGGGTTGCATGC
51331016 AATCTTAGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (30 bp):
GATCATCCATAATTAAGTGGGGTTGCATGC
Found at i:51339141 original size:27 final size:27
Alignment explanation
Indices: 51339103--51339157 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
51339093 CTCGAAAGAG
51339103 ATAGTAACATAAATCAGGGATTTCTAC
1 ATAGTAACATAAATCAGGGATTTCTAC
*
51339130 ATAGTAACATAAATTAGGGATTTCTAC
1 ATAGTAACATAAATCAGGGATTTCTAC
51339157 A
1 A
51339158 GATTAAGTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.31
Consensus pattern (27 bp):
ATAGTAACATAAATCAGGGATTTCTAC
Found at i:51340603 original size:40 final size:41
Alignment explanation
Indices: 51340559--51340818 Score: 331
Period size: 40 Copynumber: 6.5 Consensus size: 41
51340549 GCTACTCGTT
* * * *
51340559 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTAGCA
1 CAAATGCCTTCTGGATCTTAGTCCGGATT-TAGTAACTCGCA
* **
51340599 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCTGGATCTTAGTCCGGATTTAGTAACTCGCA
51340639 CAAATGCCTT-TGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCTGGATCTTAGTCCGGATTTAGTAACTCGCA
*
51340679 CGAATGCCTT-TGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCTGGATCTTAGTCCGGATTTAGTAACTCGCA
*
51340719 CGAATGCCTT-TGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCTGGATCTTAGTCCGGATTTAGTAACTCGCA
* * *
51340759 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCTGGATCTTAGTCCGGATTTAGTAAC-TCGCA
51340800 CAAA-GCCTTCTGGA-CTTAG
1 CAAATGCCTTCTGGATCTTAG
51340819 CCTGGACATC
Statistics
Matches: 204, Mismatches: 11, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
39 3 0.01
40 188 0.92
41 13 0.06
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (41 bp):
CAAATGCCTTCTGGATCTTAGTCCGGATTTAGTAACTCGCA
Found at i:51348470 original size:40 final size:40
Alignment explanation
Indices: 51348345--51348551 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
51348335 CAATTGAATG
* * ** * **
51348345 ATATCCGGGCTAAGTCCCGAA-GAATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * **
51348384 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAG-TGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTTG-TT
*
51348424 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * * *
51348464 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
51348504 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
51348544 ATATCCGG
1 ATATCCGG
51348552 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
39 23 0.17
40 111 0.80
41 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:51356447 original size:40 final size:40
Alignment explanation
Indices: 51356388--51356595 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
51356378 CAATTGAATG
* * * *
51356388 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
51356428 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
51356468 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51356508 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
51356548 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
51356588 ATATCCGG
1 ATATCCGG
51356596 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:51356526 original size:80 final size:80
Alignment explanation
Indices: 51356390--51356595 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
51356380 ATTGAATGAT
* * ** * * *
51356390 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
51356454 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
51356470 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
51356535 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
51356550 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
51356596 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:51361180 original size:20 final size:20
Alignment explanation
Indices: 51361152--51361193 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
51361142 TGAAGGGCAT
*
51361152 GGGCGTGCCCCAAGTCACAC
1 GGGCATGCCCCAAGTCACAC
*
51361172 GGGCATGCCCTAAGTCACAC
1 GGGCATGCCCCAAGTCACAC
51361192 GG
1 GG
51361194 CCCACCTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.21, C:0.36, G:0.31, T:0.12
Consensus pattern (20 bp):
GGGCATGCCCCAAGTCACAC
Found at i:51368953 original size:483 final size:485
Alignment explanation
Indices: 51368045--51369019 Score: 1510
Period size: 483 Copynumber: 2.0 Consensus size: 485
51368035 CCATGTGGAC
*
51368045 TCTAATACGCTATTTTCCAAGCCCTTAGTCACCCTTTTCTACTACTTGTGCTTAGTGGTTACCAA
1 TCTAATACGCTATTTTCCAAGCCCTTAGTCACCCCTTTCTACTACTTGTGCTTAGTGGTTACCAA
* * * *
51368110 ATTCAAAGTAAAACACAATAATACACTTGTAAATAATCTTGATTAAACTAGATGTATGGAAACCT
66 ATTCAAAGTAAAACACAATAATACACTTGTAAATAATCTTAATGAAAATAGATGTATAGAAACCT
*
51368175 CATATCATTGGTTTCATACATGATAGGTTATTTCCCACTTAGTGTTTATGGGTTCCCATGTCACT
131 CATATCATTGGTTTCATACATAATAGGTTATTTCCCACTTAGTGTTTATGGGTTCCCATGTCACT
51368240 TTAATTCATCCGAAATTGGCTCGTTCATGTGACTCATTGCCAATTGGTAACGACCAATCACTTGT
196 TTAATTCATCCGAAATTGGCTCGTTCATGTGACTCATTGCCAATTGGTAACGACCAATCACTTGT
* *
51368305 AAATAAAACCATGCATAAATTCCTAGGTCATAGCCTACTTCAATTAAGCCAATTTTCGTAGCCAT
261 AAATAAAACCATGCATAAAATCCTAGGTCA-AGCCTACTTCAATTAAGCCAATTTTCATAGCCAT
* * *
51368370 ATACAAAGAGACAAACATATTCTTACATGCCTTCATTTGGCAAATCAAATAACACATTTAACAAA
325 ATACAAAGAGACAAACATATTCTTACATGCCTTCACTTCGCAAATCAAATAACACATATAACAAA
*
51368435 ATACTCAAAAATACTATACATGCCATTGAACAAAACAAACAAAGTCTTTATACCAAAGTTTGTCT
390 ATACTCAAAAATACTATACATGCCATTGAACAAAACAAACAAAGTCTTTATACCAAAGCTTGTCT
*
51368500 AGTTGATAGTGTGTTGACTCTCCAATCGTCT
455 AGTTGATAGTGTGTTGACTCTCCAATCATCT
* *
51368531 TCTAATAGGCTATTTTCCAAGCCTTTAGTCACCCCTTTCTACTACTTGTGCTTAGTGGTTACCAA
1 TCTAATACGCTATTTTCCAAGCCCTTAGTCACCCCTTTCTACTACTTGTGCTTAGTGGTTACCAA
* * * * ** * *
51368596 GTTTGAGAG-AAAACATAATTTTACACTTGTAAATAATCTTAATGAAAATAGTTGTATAGAAATC
66 -ATTCAAAGTAAAACACAATAATACACTTGTAAATAATCTTAATGAAAATAGATGTATAGAAACC
* ** *
51368660 TCATATCATTGGTTTCGTACATAA-ATGGTTATTTCCCTTTTAGTG-TTATGGGTTCCCATGTTA
130 TCATATCATTGGTTTCATACATAATA-GGTTATTTCCCACTTAGTGTTTATGGGTTCCCATGTCA
* * *
51368723 CTTTAATTCGTCCGAAATTGGCTCGTTCATGTGGCTCATTGCCAATTGGTAACGACCCATCACTT
194 CTTTAATTCATCCGAAATTGGCTCGTTCATGTGACTCATTGCCAATTGGTAACGACCAATCACTT
* * * *
51368788 GTAATTAAAACCATGCATAAAATCGTAGGTC-AGCCTACTT-ATATTGAGCCAATTTTCATGGCC
259 GTAAATAAAACCATGCATAAAATCCTAGGTCAAGCCTACTTCA-ATTAAGCCAATTTTCATAGCC
* * * *
51368851 ATATACAAAGAGATAAACATATTTTTACATGCCTTTACTTCGCAAATCAAATGACACATATAACA
323 ATATACAAAGAGACAAACATATTCTTACATGCCTTCACTTCGCAAATCAAATAACACATATAACA
*
51368916 AAATACTCAAAAATACTATACATGCCATTGAACAAAACAAACAAAGTTTTTATACCAAAGCTTGT
388 AAATACTCAAAAATACTATACATGCCATTGAACAAAACAAACAAAGTCTTTATACCAAAGCTTGT
* *
51368981 CTAGTTGATAGTGTGTTGATTTTCCAATCATCT
453 CTAGTTGATAGTGTGTTGACTCTCCAATCATCT
51369014 TCTAAT
1 TCTAAT
51369020 CCTTTCAAGT
Statistics
Matches: 445, Mismatches: 41, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
482 1 0.00
483 184 0.41
485 108 0.24
486 147 0.33
487 5 0.01
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (485 bp):
TCTAATACGCTATTTTCCAAGCCCTTAGTCACCCCTTTCTACTACTTGTGCTTAGTGGTTACCAA
ATTCAAAGTAAAACACAATAATACACTTGTAAATAATCTTAATGAAAATAGATGTATAGAAACCT
CATATCATTGGTTTCATACATAATAGGTTATTTCCCACTTAGTGTTTATGGGTTCCCATGTCACT
TTAATTCATCCGAAATTGGCTCGTTCATGTGACTCATTGCCAATTGGTAACGACCAATCACTTGT
AAATAAAACCATGCATAAAATCCTAGGTCAAGCCTACTTCAATTAAGCCAATTTTCATAGCCATA
TACAAAGAGACAAACATATTCTTACATGCCTTCACTTCGCAAATCAAATAACACATATAACAAAA
TACTCAAAAATACTATACATGCCATTGAACAAAACAAACAAAGTCTTTATACCAAAGCTTGTCTA
GTTGATAGTGTGTTGACTCTCCAATCATCT
Found at i:51373582 original size:48 final size:48
Alignment explanation
Indices: 51373507--51373773 Score: 174
Period size: 48 Copynumber: 5.6 Consensus size: 48
51373497 CAAGGTAGGG
* * * * * *
51373507 TGCCAATTCCATATCCCAAATATGGTCTTACATAGGACCATATAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATAGGACCACATAATGA
* * * *
51373555 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACA-CAT-A
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATAGGACCACATAATGA
* * * * * *
51373601 TG-GAA-GCCGATAG-CCCAG-CTATGGTCTTACACGATG-TCTCATTATGA
1 TGCCAATGCC-AT-GTCCCAGAC-ATGGTCTTACA-TAGGACCACATAATGA
* * *
51373648 TGCCAATGCCATGTCCCGGACATGGTCTTACATGGGATCACATAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATAGGACCACATAATGA
* * * * * *
51373696 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATCACAT-GTCA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATAGGACCACATAATGA
* *
51373743 CTGCCGAA-GCCATATCCCAGATATGGTCTTA
1 -TGCC-AATGCCATGTCCCAGACATGGTCTTA
51373774 TACGGGAGCT
Statistics
Matches: 174, Mismatches: 32, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
44 4 0.02
45 23 0.13
46 7 0.04
47 8 0.05
48 126 0.72
49 6 0.03
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATAGGACCACATAATGA
Found at i:51381239 original size:24 final size:24
Alignment explanation
Indices: 51381212--51381258 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
51381202 TTTTTTAAAT
*
51381212 TTGAATTATATAA-TATTAGTATAG
1 TTGAATTATA-AATTAATAGTATAG
*
51381236 TTGACTTATAAATTAATAGTATA
1 TTGAATTATAAATTAATAGTATA
51381259 TGTATAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.45
Consensus pattern (24 bp):
TTGAATTATAAATTAATAGTATAG
Found at i:51382878 original size:22 final size:22
Alignment explanation
Indices: 51382840--51382900 Score: 90
Period size: 21 Copynumber: 2.8 Consensus size: 22
51382830 TTCACATCTC
51382840 AAAAAATTATAAAAAAAAC-T-
1 AAAAAATTATAAAAAAAACTTA
*
51382860 AAAGAATATATAAAAAAAACTTA
1 AAAAAAT-TATAAAAAAAACTTA
51382883 AAAAAATTATAAAAAAAA
1 AAAAAATTATAAAAAAAA
51382901 AACACCTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.17
21 12 0.33
22 12 0.33
23 6 0.17
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.20
Consensus pattern (22 bp):
AAAAAATTATAAAAAAAACTTA
Found at i:51389075 original size:21 final size:23
Alignment explanation
Indices: 51389034--51389076 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
51389024 ATTCTATGGA
51389034 AAAATGTGATGAGATAAGTTATT
1 AAAATGTGATGAGATAAGTTATT
*
51389057 AAAATGTGGT-AGA-AAGTTAT
1 AAAATGTGATGAGATAAGTTAT
51389077 CTGTGACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.44, C:0.00, G:0.23, T:0.33
Consensus pattern (23 bp):
AAAATGTGATGAGATAAGTTATT
Found at i:51389783 original size:23 final size:23
Alignment explanation
Indices: 51389734--51389783 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
51389724 TTTGATTTGT
* *
51389734 ACTTCGGTACTTTTGTTACTTAC
1 ACTTCAGTACTTTTGTTACTTAA
*
51389757 ACTTCAGTGCTTTTGTT-CTTGAA
1 ACTTCAGTACTTTTGTTACTT-AA
51389780 ACTT
1 ACTT
51389784 TATTATGTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (23 bp):
ACTTCAGTACTTTTGTTACTTAA
Found at i:51390509 original size:20 final size:20
Alignment explanation
Indices: 51390484--51390521 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51390474 TTGTAATTAA
51390484 ATATTATT-TAATTATAATGT
1 ATATTATTAT-ATTATAATGT
51390504 ATATTATTATATTATAAT
1 ATATTATTATATTATAAT
51390522 ATTGTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
ATATTATTATATTATAATGT
Found at i:51390568 original size:20 final size:18
Alignment explanation
Indices: 51390532--51390568 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
51390522 ATTGTAATTT
51390532 ATATTAATTATAAATAAG
1 ATATTAATTATAAATAAG
51390550 ATATTATATTATGAAATAA
1 ATATTA-ATTAT-AAATAA
51390569 ATCAAATGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (18 bp):
ATATTAATTATAAATAAG
Found at i:51391353 original size:13 final size:14
Alignment explanation
Indices: 51391332--51391371 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
51391322 ATTTGATTGG
51391332 AAAATGAATTAAA-
1 AAAATGAATTAAAC
*
51391345 AATATGAATTAAAC
1 AAAATGAATTAAAC
51391359 AAAAGTGAATTAA
1 AAAA-TGAATTAA
51391372 TTTATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 3 0.13
15 8 0.35
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.25
Consensus pattern (14 bp):
AAAATGAATTAAAC
Found at i:51401731 original size:18 final size:18
Alignment explanation
Indices: 51401708--51401743 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
51401698 GTATTAGGAG
51401708 AATCGAATTCACCAATTC
1 AATCGAATTCACCAATTC
51401726 AATCGAATTCACCAATTC
1 AATCGAATTCACCAATTC
51401744 TTATGGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.06, T:0.28
Consensus pattern (18 bp):
AATCGAATTCACCAATTC
Found at i:51401916 original size:30 final size:30
Alignment explanation
Indices: 51401882--51401942 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
51401872 TTGAAAGCCT
51401882 AATGTTGTAAGGTTTTAGATATGGAATAGA
1 AATGTTGTAAGGTTTTAGATATGGAATAGA
51401912 AATGTTGTAAGGTTTTAGATATGGAATAGA
1 AATGTTGTAAGGTTTTAGATATGGAATAGA
51401942 A
1 A
51401943 TAAGTTATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (30 bp):
AATGTTGTAAGGTTTTAGATATGGAATAGA
Found at i:51404648 original size:5 final size:5
Alignment explanation
Indices: 51404638--51404671 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
51404628 TTATTTATAT
51404638 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAA
51404672 TAAATAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TTAAA
Found at i:51405209 original size:23 final size:26
Alignment explanation
Indices: 51405160--51405216 Score: 84
Period size: 23 Copynumber: 2.3 Consensus size: 26
51405150 AAATATTAAA
*
51405160 TATTTTAATTATTTATAATTTAAATT
1 TATTTTAATTAATTATAATTTAAATT
51405186 TATTTTAA-TAATTA-AA-TTAAATT
1 TATTTTAATTAATTATAATTTAAATT
51405209 TATTTTAA
1 TATTTTAA
51405217 ACTATTTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 15 0.50
24 2 0.07
25 5 0.17
26 8 0.27
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (26 bp):
TATTTTAATTAATTATAATTTAAATT
Found at i:51405210 original size:18 final size:19
Alignment explanation
Indices: 51405170--51405210 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
51405160 TATTTTAATT
*
51405170 ATTT-ATAATTTAAATTTA
1 ATTTAATAATTTAAATTAA
*
51405188 TTTTAATAA-TTAAATTAA
1 ATTTAATAATTTAAATTAA
51405206 ATTTA
1 ATTTA
51405211 TTTTAAACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTAATAATTTAAATTAA
Found at i:51406859 original size:85 final size:85
Alignment explanation
Indices: 51406701--51406859 Score: 185
Period size: 85 Copynumber: 1.9 Consensus size: 85
51406691 GCTCGAGTGT
* * * * * *
51406701 GGCCGTGTGGGCCACACGGGCAAAGGCCAATCTAGGCGTGTGGACCTACACAGGCATGTCACACT
1 GGCCATGTGGGCCACACGGACAAAGGCCAATCTAGGCGTATGGACCCACACAGGCAAGCCACACT
*
51406766 GGCGTGTGGATTTTGGACCA
66 GGCATGTGGATTTTGGACCA
* * * * * *
51406786 GGCCATGTGGGCCACACGGACAAAGGCCAATTTGGGTGTATGGGCCCATACAGGCAAGCCATAC-
1 GGCCATGTGGGCCACACGGACAAAGGCCAATCTAGGCGTATGGACCCACACAGGCAAGCCACACT
51406850 GAGCATGTGG
66 G-GCATGTGG
51406860 GCCCATAATT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
84 1 0.02
85 59 0.98
ACGTcount: A:0.23, C:0.25, G:0.34, T:0.18
Consensus pattern (85 bp):
GGCCATGTGGGCCACACGGACAAAGGCCAATCTAGGCGTATGGACCCACACAGGCAAGCCACACT
GGCATGTGGATTTTGGACCA
Found at i:51408374 original size:14 final size:14
Alignment explanation
Indices: 51408355--51408382 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51408345 ATCTAATACT
51408355 AATAGAATAGAAAA
1 AATAGAATAGAAAA
51408369 AATAGAATAGAAAA
1 AATAGAATAGAAAA
51408383 TACTAGTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:51409064 original size:2 final size:2
Alignment explanation
Indices: 51409057--51409093 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
51409047 ACAAGCTAGT
51409057 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
51409094 GGTATGGTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:51411307 original size:2 final size:2
Alignment explanation
Indices: 51411300--51411333 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
51411290 TCATTTCGTA
* *
51411300 AT AT AT AT AT AT CT AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51411334 TTAAATATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:51413550 original size:66 final size:66
Alignment explanation
Indices: 51413468--51413603 Score: 272
Period size: 66 Copynumber: 2.1 Consensus size: 66
51413458 GCCTTGAAGT
51413468 TTACTGTTTATTCCCATACAAGTCTCCGGTTCTATCGTCTCCACTCAAATTTCTAACAATTCCCT
1 TTACTGTTTATTCCCATACAAGTCTCCGGTTCTATCGTCTCCACTCAAATTTCTAACAATTCCCT
51413533 A
66 A
51413534 TTACTGTTTATTCCCATACAAGTCTCCGGTTCTATCGTCTCCACTCAAATTTCTAACAATTCCCT
1 TTACTGTTTATTCCCATACAAGTCTCCGGTTCTATCGTCTCCACTCAAATTTCTAACAATTCCCT
51413599 A
66 A
51413600 TTAC
1 TTAC
51413604 ATGTCACTAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 70 1.00
ACGTcount: A:0.24, C:0.30, G:0.07, T:0.38
Consensus pattern (66 bp):
TTACTGTTTATTCCCATACAAGTCTCCGGTTCTATCGTCTCCACTCAAATTTCTAACAATTCCCT
A
Found at i:51415937 original size:22 final size:22
Alignment explanation
Indices: 51415912--51415954 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
51415902 TATATATTAA
51415912 CTTTTAGTTGAATCTTTTCTTC
1 CTTTTAGTTGAATCTTTTCTTC
* **
51415934 CTTTTATTTTTATCTTTTCTT
1 CTTTTAGTTGAATCTTTTCTT
51415955 ATTTTAATCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.12, C:0.16, G:0.05, T:0.67
Consensus pattern (22 bp):
CTTTTAGTTGAATCTTTTCTTC
Found at i:51415958 original size:16 final size:17
Alignment explanation
Indices: 51415937--51415971 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
51415927 TTTCTTCCTT
*
51415937 TTATTTTTATC-TTTTC
1 TTATTTTAATCATTTTC
51415953 TTATTTTAATCATTTTC
1 TTATTTTAATCATTTTC
51415970 TT
1 TT
51415972 TTCCATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATTTTAATCATTTTC
Found at i:51416377 original size:30 final size:30
Alignment explanation
Indices: 51416318--51416379 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
51416308 ATTAGTGTGA
* * * *
51416318 TTTTATTTTGGTCACTCATATTTAAAAAAT
1 TTTTATTTTAGTCACTAACATTGAAAAAAT
*
51416348 TTTTATTTTAGTCACTAACATTGACAAAAT
1 TTTTATTTTAGTCACTAACATTGAAAAAAT
51416378 TT
1 TT
51416380 AATGTTTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.48
Consensus pattern (30 bp):
TTTTATTTTAGTCACTAACATTGAAAAAAT
Found at i:51417363 original size:7 final size:7
Alignment explanation
Indices: 51417353--51417386 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
51417343 TTTTAAATTT
51417353 TTTTAAA
1 TTTTAAA
51417360 TTTTAAA
1 TTTTAAA
51417367 TTTTAAA
1 TTTTAAA
* *
51417374 TTTGATA
1 TTTTAAA
51417381 TTTTAA
1 TTTTAA
51417387 GAAGTAAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (7 bp):
TTTTAAA
Found at i:51419815 original size:18 final size:18
Alignment explanation
Indices: 51419792--51419829 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
51419782 AGCTAAGTTC
51419792 TCAGGGGAGAATAGTTTT
1 TCAGGGGAGAATAGTTTT
51419810 TCAGGGGAGAATAGTTTT
1 TCAGGGGAGAATAGTTTT
51419828 TC
1 TC
51419830 GATACTTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.08, G:0.32, T:0.34
Consensus pattern (18 bp):
TCAGGGGAGAATAGTTTT
Found at i:51421628 original size:19 final size:19
Alignment explanation
Indices: 51421604--51421654 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
51421594 TGGACACAGG
51421604 AACACGCCCGTGTGTCTTC
1 AACACGCCCGTGTGTCTTC
*
51421623 AACACGCCCGCGTGTCTTC
1 AACACGCCCGTGTGTCTTC
*
51421642 AACAAGCCCGTGT
1 AACACGCCCGTGT
51421655 CCTCAGGCCG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.20, C:0.37, G:0.22, T:0.22
Consensus pattern (19 bp):
AACACGCCCGTGTGTCTTC
Found at i:51423543 original size:48 final size:48
Alignment explanation
Indices: 51423510--51423796 Score: 367
Period size: 48 Copynumber: 6.0 Consensus size: 48
51423500 ATGAATCCAT
*
51423510 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACAC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAC
* * * * * ** *
51423558 ATATCATTGCTGATGCCATGTTCGAGACATGATCTTACACAAGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAC
* *
51423606 ATATCATCGCCGATGCCATGTCCCAAACATGGTTTTACACTGGCACAC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAC
* * * * * *
51423654 ATATCATCACTGATGCCATATCCCAAACATGGTCTTATATTGGCACAC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAC
* *
51423702 ATATCATTGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAC
* * * *
51423750 ATATCATCACTGATGCCATGTCCCATACATGGTCTTACATTGGCACA
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
51423797 AATTAACATG
Statistics
Matches: 202, Mismatches: 37, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 202 1.00
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (48 bp):
ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAC
Found at i:51423792 original size:96 final size:96
Alignment explanation
Indices: 51423474--51423796 Score: 425
Period size: 96 Copynumber: 3.4 Consensus size: 96
51423464 TAAAGTACCA
* * *
51423474 ATGCGATGTCCCCTACATGGTCTTACA-T-GAATCCATATATCATCGCCGATGCCATGTCCCAGA
1 ATGCCATGTCCCATACATGGTCTTACATTGGCA--CATATATCATCGCCGATGCCATGTCCCAGA
* **
51423537 CATGGTCTTACACTAGCACACATATCATTGCTG
64 CATGGTCTTACACTGGCACACATATCATCACTG
* * * * *** *
51423570 ATGCCATGTTCGAGACATGATCTTACACAAGCACATATATCATCGCCGATGCCATGTCCCAAACA
1 ATGCCATGTCCCATACATGGTCTTACATTGGCACATATATCATCGCCGATGCCATGTCCCAGACA
*
51423635 TGGTTTTACACTGGCACACATATCATCACTG
66 TGGTCTTACACTGGCACACATATCATCACTG
* * * * * *
51423666 ATGCCATATCCCAAACATGGTCTTATATTGGCACACATATCATTGTCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCATACATGGTCTTACATTGGCACATATATCATCGCCGATGCCATGTCCCAGACA
51423731 TGGTCTTACACTGGCACACATATCATCACTG
66 TGGTCTTACACTGGCACACATATCATCACTG
51423762 ATGCCATGTCCCATACATGGTCTTACATTGGCACA
1 ATGCCATGTCCCATACATGGTCTTACATTGGCACA
51423797 AATTAACATG
Statistics
Matches: 195, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
96 193 0.99
98 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (96 bp):
ATGCCATGTCCCATACATGGTCTTACATTGGCACATATATCATCGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCACACATATCATCACTG
Found at i:51425117 original size:46 final size:46
Alignment explanation
Indices: 51425029--51425200 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
51425019 TTGTGAGAGC
* * *
51425029 TAGTGTAAGACCATGTCCGGGACATGGCATCGGCATTGAGACGAAGG
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGAA-G
51425076 ATAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTAAG
1 -TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACG-AAG
* * *
51425122 CCAGTGTAAGA-CATGTTTGGGACAT-GCATCGG-CTACGAGATGATAG
1 -TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGACGA-AG
*
51425168 TCAGAGTAAGACCATGTCTGGGACATGGCATCG
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCG
51425201 ACACTTTACC
Statistics
Matches: 108, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
45 3 0.03
46 61 0.56
47 28 0.26
48 16 0.15
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (46 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGAAG
Found at i:51429114 original size:55 final size:53
Alignment explanation
Indices: 51428981--51429179 Score: 195
Period size: 55 Copynumber: 3.7 Consensus size: 53
51428971 AACTTACTAT
* *
51428981 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTATGAACTCACCAA
* * * *
51429034 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTACCTTATAGTAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCC-TTACCTTAT-G-AACTCACCAA
* *** *
51429089 TGCCAAGTCTTGACATGGTCTTACATGATTTCCTTACCTTA-GAAACCTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTATG-AA-CTCACCAA
* ** *
51429143 TTGCCATGCCTTGGTATGGTCTTACATGGTATCCTTA
1 -TGCCATGTCTTGACATGGTCTTACATGGGATCCTTA
51429180 AACCCTAATG
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 38 0.32
54 8 0.07
55 70 0.58
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTATGAACTCACCAA
Found at i:51436935 original size:22 final size:21
Alignment explanation
Indices: 51436910--51436950 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
51436900 TGTTGGAATG
51436910 CTCACACGGGCATGTTGCCCCT
1 CTCACACGGGCATG-TGCCCCT
* *
51436932 CTCACATGGGCGTGTGCCC
1 CTCACACGGGCATGTGCCC
51436951 TTGTGTCAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.12, C:0.39, G:0.27, T:0.22
Consensus pattern (21 bp):
CTCACACGGGCATGTGCCCCT
Found at i:51438424 original size:27 final size:27
Alignment explanation
Indices: 51438394--51438467 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 27
51438384 AGTCTGACGA
* *
51438394 GACATTAAATACAGGATAGTTTGA-TGG
1 GACATTAAACACAGGATAGTAT-ATTGG
51438421 GACATTAAACAC-GAGATAGTATATTGG
1 GACATTAAACACAG-GATAGTATATTGG
*
51438448 GATATTAAACACAGGATAGT
1 GACATTAAACACAGGATAGT
51438468 CGACCGGGAC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
26 2 0.05
27 38 0.93
28 1 0.02
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
GACATTAAACACAGGATAGTATATTGG
Found at i:51447938 original size:2 final size:2
Alignment explanation
Indices: 51447931--51447960 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
51447921 TTTCAGAAAC
51447931 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51447961 CAAATCAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51461429 original size:43 final size:42
Alignment explanation
Indices: 51461358--51461487 Score: 145
Period size: 42 Copynumber: 3.1 Consensus size: 42
51461348 CAGAAAGCAT
* * * *
51461358 ATACAATGCCAACGTCCTAGACATGGTCTTACATGTAATCAACC
1 ATACGATGCCAATGTCCCAGACATGGTCTTACATGAAATC-A-C
* * * *
51461402 AT-CGATGCCACTTTCCCAGACAGGGTCTTACATGAAATCAG
1 ATACGATGCCAATGTCCCAGACATGGTCTTACATGAAATCAC
* *
51461443 ATACGATGCCAATGTCCCAGACATGGTCTTACACGATATCAC
1 ATACGATGCCAATGTCCCAGACATGGTCTTACATGAAATCAC
51461485 ATA
1 ATA
51461488 TCAAAAATCC
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
41 2 0.03
42 37 0.52
43 30 0.42
44 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACATGAAATCAC
Found at i:51461463 original size:42 final size:41
Alignment explanation
Indices: 51461358--51461475 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 41
51461348 CAGAAAGCAT
* * * *
51461358 ATACAATGCCAACGTCCTAGACATGGTCTTACATGTAATCA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
* * * *
51461399 ACCATCGATGCCACTTTCCCAGACAGGGTCTTACATGAAATCA
1 A-TA-CGATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
51461442 GATACGATGCCAATGTCCCAGACATGGTCTTACA
1 -ATACGATGCCAATGTCCCAGACATGGTCTTACA
51461476 CGATATCACA
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
41 1 0.02
42 28 0.45
43 32 0.52
44 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (41 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
Found at i:51463393 original size:49 final size:48
Alignment explanation
Indices: 51463331--51463429 Score: 119
Period size: 48 Copynumber: 2.0 Consensus size: 48
51463321 CACACTCTTG
*
51463331 TCTTATCAAAATGGCT-TAGAAACATGAAAGATATTCTTACCCACACTTA
1 TCTTATCAAAATGG-TGGAGAAACAT-AAAGATATTCTTACCCACACTTA
* * * * *
51463380 TCTTATTAGAATGGTGGAGGAACATAAATATGTTCTTACCCACACTTA
1 TCTTATCAAAATGGTGGAGAAACATAAAGATATTCTTACCCACACTTA
51463428 TC
1 TC
51463430 AGAATATTGT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
48 24 0.56
49 19 0.44
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (48 bp):
TCTTATCAAAATGGTGGAGAAACATAAAGATATTCTTACCCACACTTA
Found at i:51465157 original size:57 final size:57
Alignment explanation
Indices: 51465080--51465216 Score: 145
Period size: 57 Copynumber: 2.4 Consensus size: 57
51465070 GTTATGGATT
* * * *
51465080 GGATTTAGCCCGGACGGGTAATCC-AGA-TCAAGCTC-TTTAGAGTATATGTCATAAAAA
1 GGATTTAGCCTGGACTGGTAATCCTA-ACT-AAGCTCAATT-GAGTATATATCATAAAAA
* ** * *
51465137 GGATTTAGCTTGGACTGGTAATCCTAACTAAGCTCAATTGAGTATATATTGTAGACA
1 GGATTTAGCCTGGACTGGTAATCCTAACTAAGCTCAATTGAGTATATATCATAAAAA
51465194 GGATTTAGCCTGGACTGGTAATC
1 GGATTTAGCCTGGACTGGTAATC
51465217 TTGTTGTCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
57 63 0.94
58 4 0.06
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (57 bp):
GGATTTAGCCTGGACTGGTAATCCTAACTAAGCTCAATTGAGTATATATCATAAAAA
Found at i:51466987 original size:34 final size:34
Alignment explanation
Indices: 51466948--51467058 Score: 141
Period size: 34 Copynumber: 3.3 Consensus size: 34
51466938 AAATAAATGT
* * *
51466948 ATATATATTCACCTTCGGTTATATCAAACCATAC
1 ATATATATTCACCTTCGATTATACCAAGCCATAC
* *
51466982 ATATATATTCACTTTCGATTATACCAAGCTATAC
1 ATATATATTCACCTTCGATTATACCAAGCCATAC
* * * *
51467016 ATTTATAATCATCTTCGATTATGCCAAGCCATAC
1 ATATATATTCACCTTCGATTATACCAAGCCATAC
51467050 ATATATATT
1 ATATATATT
51467059 TATGTACTTC
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 64 1.00
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (34 bp):
ATATATATTCACCTTCGATTATACCAAGCCATAC
Found at i:51473508 original size:42 final size:41
Alignment explanation
Indices: 51473400--51473514 Score: 133
Period size: 44 Copynumber: 2.7 Consensus size: 41
51473390 TTCTGATATG
* **
51473400 TGATTTCGTGCAAGACCAC-GTCTGGGACATTGGCATCGATT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACATCAGCATCGATT
* *
51473441 TGAGATTTACGTGTAAGACCATGTCTAGGACATCAGCATCGTATT
1 T--GATTT-CGTGTAAGACCCTGTCTGGGACATCAGCATCG-ATT
51473486 TGATTTCGTGTAAGACCCTGTCTGGGACA
1 TGATTTCGTGTAAGACCCTGTCTGGGACA
51473515 GTGGTATAGA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.02
42 21 0.34
43 10 0.16
44 26 0.42
45 4 0.06
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.30
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACATCAGCATCGATT
Found at i:51473530 original size:43 final size:42
Alignment explanation
Indices: 51473394--51473555 Score: 150
Period size: 43 Copynumber: 3.8 Consensus size: 42
51473384 ATAGGATTCT
* *
51473394 GATATGTGATTTCGTGCAAGACCACGTCTGGGACATTGGCATC
1 GATATTTGATTTCGTGTAAGACCACGTCTGGGACA-TGGCATC
* * * *
51473437 GAT-TTGAGATTTACGTGTAAGACCATGTCTAGGACATCAGCATC
1 GATATT-TGATTT-CGTGTAAGACCACGTCTGGGACAT-GGCATC
* *
51473481 G-TATTTGATTTCGTGTAAGACC-CTGTCTGGGACAGTGGTATA
1 GATATTTGATTTCGTGTAAGACCAC-GTCTGGGACA-TGGCATC
* * *
51473523 GATATTTGATTACATGTATGACCACGTCTGGGA
1 GATATTTGATTTCGTGTAAGACCACGTCTGGGA
51473556 TGTTGCCATT
Statistics
Matches: 96, Mismatches: 15, Indels: 16
0.76 0.12 0.13
Matches are distributed among these distances:
42 25 0.26
43 42 0.44
44 29 0.30
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (42 bp):
GATATTTGATTTCGTGTAAGACCACGTCTGGGACATGGCATC
Found at i:51489342 original size:55 final size:54
Alignment explanation
Indices: 51489230--51489402 Score: 174
Period size: 55 Copynumber: 3.2 Consensus size: 54
51489220 CATGTCTTTA
* * * * *
51489230 CATGGTCTTACGTG-GTATCCTTGCTTTAT-GAACTCA-CTAACGCCATGCCTTGG
1 CATGGTCTTACATGAGGA-CCTTGCCTTATAGAACTCATC-AATGTCATGCCTTGG
* * *
51489283 CATGGTCTTACATG-GGACCTTTTCCTTATAGTAACTCATCAATGTCATGTCTTGA
1 CATGGTCTTACATGAGGACC-TTGCCTTATAG-AACTCATCAATGTCATGCCTTGG
*** *
51489338 CATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGTCATGCCTTGG
1 CATGGTCTTACATGAGGACCTTGCCTTATAGAACTCATCAATGTCATGCCTTGG
51489392 CATGGTCTTAC
1 CATGGTCTTAC
51489403 GTGATATCCT
Statistics
Matches: 100, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
52 2 0.02
53 22 0.22
54 32 0.32
55 41 0.41
56 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
CATGGTCTTACATGAGGACCTTGCCTTATAGAACTCATCAATGTCATGCCTTGG
Found at i:51489401 original size:54 final size:54
Alignment explanation
Indices: 51489230--51489413 Score: 203
Period size: 54 Copynumber: 3.4 Consensus size: 54
51489220 CATGTCTTTA
* * * * *
51489230 CATGGTCTTACGTGGTATCCTTGCTTTAT-GAACTCA-CTAACGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATC-AATGTCATGCCTTGG
** * * *
51489283 CATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTCATCAATGTCATGTCTTGA
1 CATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATGTCATGCCTTGG
* *
51489338 CATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGTCATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGTCATGCCTTGG
*
51489392 CATGGTCTTACGTGATATCCTT
1 CATGGTCTTACATGATATCCTT
51489414 ATCTTACCAA
Statistics
Matches: 109, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 22 0.20
54 41 0.38
55 41 0.38
56 3 0.03
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (54 bp):
CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGTCATGCCTTGG
Found at i:51489467 original size:46 final size:47
Alignment explanation
Indices: 51489392--51489512 Score: 181
Period size: 46 Copynumber: 2.6 Consensus size: 47
51489382 CATGCCTTGG
* *
51489392 CATGGTCTTACGTGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
* * *
51489439 CATGGT-TTACATGGTATCTTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
51489485 CATAGTCTTACATGATATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTGTCTTA
51489513 GTGCCAATGC
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
46 40 0.62
47 25 0.38
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.38
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:51489630 original size:45 final size:45
Alignment explanation
Indices: 51489392--51489646 Score: 190
Period size: 47 Copynumber: 5.5 Consensus size: 45
51489382 CATGCCTTGG
* * * **
51489392 CATGGTCTTACGTGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACC-AATGCCATG-TCTTAA
* * **
51489439 CATGGT-TTACATGGTATCTTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACC-AATGCCATG-TCTTAA
* * ** **
51489485 CATAGTCTTACATGATATCCTTGTCTTAGTGCCAATGCCACATCTTGG
1 CATGGTCTTACATGGTATCCTTGTCTTA---CCAATGCCATGTCTTAA
** * * * *
51489533 TGTGGTCTTACATGG-AGTCCTTAATCAATGCCAATGTCATGTCTTAA
1 CATGGTCTTACATGGTA-TCCTT-GTC-TTACCAATGCCATGTCTTAA
* * *
51489580 AATGGTCTTACATGGGATCCTTGTCTTACCAATGCCATGTCTTGA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAATGCCATGTCTTAA
51489625 CATGGTCTTACATGGTATCCTT
1 CATGGTCTTACATGGTATCCTT
51489647 AACTGTCAAT
Statistics
Matches: 164, Mismatches: 36, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
45 36 0.22
46 42 0.26
47 56 0.34
48 19 0.12
49 8 0.05
50 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.36
Consensus pattern (45 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAATGCCATGTCTTAA
Found at i:51497115 original size:40 final size:40
Alignment explanation
Indices: 51497070--51497236 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
51497060 CGGAATATAA
51497070 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
51497110 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
51497150 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
51497190 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
51497229 CCGGATAT
1 CCGGATAT
51497237 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51505117 original size:40 final size:40
Alignment explanation
Indices: 51505072--51505238 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
51505062 CGGAATATAA
51505072 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
51505112 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
51505152 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
51505192 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
51505231 CCGGATAT
1 CCGGATAT
51505239 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51511147 original size:39 final size:39
Alignment explanation
Indices: 51511093--51511286 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
51511083 TGTGTATGAA
* * *
51511093 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAACGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
51511132 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
51511171 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
51511210 TGTGCGAGTTGTGATATCCGGGTTAAGTTCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
51511250 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
51511287 GTTTGAACGA
Statistics
Matches: 135, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 96 0.71
40 39 0.29
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:51513813 original size:23 final size:22
Alignment explanation
Indices: 51513758--51513813 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
51513748 TTTATGTTTT
51513758 TATTTTTATTTTATTTTAAGAC
1 TATTTTTATTTTATTTTAAGAC
* *
51513780 TACTTTTTATTTTTTCTTTAAGCC
1 TA-TTTTTATTTTAT-TTTAAGAC
*
51513804 TATTTCTATT
1 TATTTTTATT
51513814 AGATTTTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.07
23 18 0.62
24 9 0.31
ACGTcount: A:0.21, C:0.11, G:0.04, T:0.64
Consensus pattern (22 bp):
TATTTTTATTTTATTTTAAGAC
Found at i:51522110 original size:2 final size:2
Alignment explanation
Indices: 51522103--51522135 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
51522093 TCGATCGGAG
51522103 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
51522136 GTACGCACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51528450 original size:27 final size:26
Alignment explanation
Indices: 51528413--51528652 Score: 117
Period size: 27 Copynumber: 8.9 Consensus size: 26
51528403 GCGAGGCTGC
*
51528413 CAGATATTGTGACGAAGTCACCAGAT
1 CAGATATTGTGACGAAGCCACCAGAT
*
51528439 CAGATAATTGTG--GAATCGCCACCAGAA
1 CAGAT-ATTGTGACGAA--GCCACCAGAT
*
51528466 CAGATATATGTGGC-AGAGCCACCAGAT
1 CAGATAT-TGTGACGA-AGCCACCAGAT
* * *
51528493 CAGATAATCGTGGC-ATAGCCACCAGAA
1 CAGAT-ATTGTGACGA-AGCCACCAGAT
51528520 CAGATATATGTGGTA-GAA-CCACCAGAT
1 CAGATAT-TGT-G-ACGAAGCCACCAGAT
* *
51528547 CAGATAATTGTGGC-ATAGCCACTAGAAT
1 CAGAT-ATTGTGACGA-AGCCACCAG-AT
*
51528575 -AGATATATGTGGC-ATAGCCACCAGAAT
1 CAGATAT-TGTGACGA-AGCCACCAG-AT
*
51528602 -AGATATATGTGGC-AGAGCCACCAGAT
1 CAGATAT-TGTGACGA-AGCCACCAGAT
*
51528628 CAGATAATTGTGGC-ATAGCCACCAG
1 CAGAT-ATTGTGACGA-AGCCACCAG
51528653 GACGCTTCCT
Statistics
Matches: 180, Mismatches: 14, Indels: 39
0.77 0.06 0.17
Matches are distributed among these distances:
25 4 0.02
26 15 0.08
27 148 0.82
28 11 0.06
29 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAT
Found at i:51528491 original size:54 final size:54
Alignment explanation
Indices: 51528431--51528652 Score: 297
Period size: 54 Copynumber: 4.1 Consensus size: 54
51528421 GTGACGAAGT
* *
51528431 CACCAGATCAGATAATTGTGGAATCGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* * *
51528485 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGTAGAAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* * *
51528539 CACCAGATCAGATAATTGTGGCATAGCCACTAGAATAGATATATGTGGCATAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* * *
51528593 CACCAGAAT-AGAT-ATATGTGGCAGAGCCACCAGATCAGATA-ATTGTGGCATAGC
1 CACCAG-ATCAGATAAT-TGTGGCATAGCCACCAGAACAGATATA-TGTGGCAGAGC
51528647 CACCAG
1 CACCAG
51528653 GACGCTTCCT
Statistics
Matches: 150, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
53 3 0.02
54 145 0.97
55 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:51528525 original size:81 final size:81
Alignment explanation
Indices: 51528431--51528652 Score: 290
Period size: 81 Copynumber: 2.7 Consensus size: 81
51528421 GTGACGAAGT
* ** * *
51528431 CACCAGATCAGATA-ATTGTGGAATCGCCACCAGAACAGAT-ATATGTGGCAGAGCCACCAG-AT
1 CACCAGAACAGATATA-TGTGGAAGAGCCACCAGATCAGATAAT-TGTGGCATAGCCACCAGAAT
51528493 CAGATA-ATCGTGGCATAGC
64 -AGATATAT-GTGGCATAGC
* * *
51528512 CACCAGAACAGATATATGTGGTAGAACCACCAGATCAGATAATTGTGGCATAGCCACTAGAATAG
1 CACCAGAACAGATATATGTGGAAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAATAG
51528577 ATATATGTGGCATAGC
66 ATATATGTGGCATAGC
* *
51528593 CACCAGAATAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGAACAGATATATGTGGAAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
51528653 GACGCTTCCT
Statistics
Matches: 125, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
81 118 0.94
82 7 0.06
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (81 bp):
CACCAGAACAGATATATGTGGAAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAATAG
ATATATGTGGCATAGC
Found at i:51530298 original size:26 final size:26
Alignment explanation
Indices: 51530267--51530373 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
51530257 TGAAATGCCC
51530267 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
51530293 ATCATGGAACATTTA-CTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
51530318 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
51530344 ATCATGGAACATTTACCT-AACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
51530370 ATCA
1 ATCA
51530374 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
25 26 0.35
26 48 0.65
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:51530337 original size:51 final size:52
Alignment explanation
Indices: 51530267--51530373 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 52
51530257 TGAAATGCCC
51530267 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTA-CTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* * *
51530318 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
51530370 ATCA
1 ATCA
51530374 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 39 0.75
52 13 0.25
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:51535504 original size:29 final size:29
Alignment explanation
Indices: 51535470--51535601 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
51535460 TACTCGATTT
** * *
51535470 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
51535499 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
51535528 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
51535557 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
51535586 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
51535602 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:51543472 original size:40 final size:38
Alignment explanation
Indices: 51543423--51543529 Score: 119
Period size: 39 Copynumber: 2.7 Consensus size: 38
51543413 ATCACGATTT
*
51543423 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
51543463 GCACGAATGCCTTCGGGTCTTAG-CCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
51543502 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
51543530 TTATAATTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
37 1 0.02
38 4 0.07
39 28 0.47
40 26 0.44
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:51543513 original size:39 final size:39
Alignment explanation
Indices: 51543423--51543572 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 39
51543413 ATCACGATTT
*
51543423 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
51543463 GCACGAATGCCTTCGGGTCTTAG-CCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * * ** *
51543502 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
51543542 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
51543573 TCATTCAATT
Statistics
Matches: 89, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
37 1 0.01
38 4 0.04
39 28 0.31
40 55 0.62
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:51550302 original size:80 final size:80
Alignment explanation
Indices: 51550218--51550366 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
51550208 TATGGTAACC
* * * *
51550218 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
51550282 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
51550298 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
51550363 CCGG
66 CCGG
51550367 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:51550308 original size:40 final size:38
Alignment explanation
Indices: 51550259--51550366 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
51550249 ATCACGATTT
*
51550259 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
51550299 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
51550339 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
51550367 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:51553482 original size:20 final size:19
Alignment explanation
Indices: 51553455--51553573 Score: 77
Period size: 19 Copynumber: 6.2 Consensus size: 19
51553445 TTTTTTATTG
51553455 TTTT-AATAATTTTATATAA
1 TTTTCAATAATTTT-TATAA
*
51553474 TTTTCAATAACTTTTTTAAAA
1 TTTTCAATAA--TTTTTATAA
* * *
51553495 TTTTAAATACTTCTCTATAA
1 TTTTCAATAATT-TTTATAA
* *
51553515 -TTTCTA-AATATTTATAA
1 TTTTCAATAATTTTTATAA
* *
51553532 TATTT-AATCATTTTTATAGT
1 T-TTTCAATAATTTTTATA-A
51553552 TTTTCAAT-ATTTTTATAA
1 TTTTCAATAATTTTTATAA
51553570 TTTT
1 TTTT
51553574 TCTAAATTTT
Statistics
Matches: 76, Mismatches: 15, Indels: 19
0.69 0.14 0.17
Matches are distributed among these distances:
17 6 0.08
18 7 0.09
19 33 0.43
20 14 0.18
21 12 0.16
22 4 0.05
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.57
Consensus pattern (19 bp):
TTTTCAATAATTTTTATAA
Found at i:51553503 original size:21 final size:19
Alignment explanation
Indices: 51553455--51553500 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
51553445 TTTTTTATTG
*
51553455 TTTTAATAATTTTATATAA
1 TTTTAATAATTTTATAAAA
*
51553474 TTTTCAATAACTTTTTTAAAA
1 TTTT-AATAA-TTTTATAAAA
51553495 TTTTAA
1 TTTTAA
51553501 ATACTTCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.17
20 7 0.30
21 12 0.52
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTTAATAATTTTATAAAA
Done.