Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 177 of 378
Found at i:51553595 original size:57 final size:58
Alignment explanation
Indices: 51553515--51553651 Score: 176
Period size: 57 Copynumber: 2.4 Consensus size: 58
51553505 TTCTCTATAA
* * *
51553515 TTTCTAAATATTTATAATA-TTTAATCATTTTTATAGTTTTTCAAT-ATTTT-TATAATT
1 TTTCTAAATATTTATAATATTTTAATAAATTATATAGTTTTT-AATGATTTTCTA-AATT
*
51553572 TTTCTAAAT-TTTATAATATTTTAATAAATTATATAGTTTTTTATGATTTTCTAAATT
1 TTTCTAAATATTTATAATATTTTAATAAATTATATAGTTTTTAATGATTTTCTAAATT
51553629 TTTCTAAATATTT-TAATAATTTT
1 TTTCTAAATATTTATAAT-ATTTT
51553652 TAGGCTTAAA
Statistics
Matches: 71, Mismatches: 4, Indels: 9
0.85 0.05 0.11
Matches are distributed among these distances:
56 11 0.15
57 50 0.70
58 10 0.14
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.59
Consensus pattern (58 bp):
TTTCTAAATATTTATAATATTTTAATAAATTATATAGTTTTTAATGATTTTCTAAATT
Found at i:51553612 original size:19 final size:19
Alignment explanation
Indices: 51553519--51553612 Score: 75
Period size: 19 Copynumber: 4.9 Consensus size: 19
51553509 CTATAATTTC
*
51553519 TAAATATTTATAATATTTAA
1 TAAAT-TTTATAATTTTTAA
* * *
51553539 TCATTTTTATAGTTTTTCAA
1 TAAATTTTATAATTTTT-AA
* *
51553559 T-ATTTTTATAATTTTT-C
1 TAAATTTTATAATTTTTAA
51553576 TAAATTTTATAATATTTTAA
1 TAAATTTTATAAT-TTTTAA
* *
51553596 TAAATTATATAGTTTTT
1 TAAATTTTATAATTTTT
51553613 TATGATTTTC
Statistics
Matches: 60, Mismatches: 10, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
17 1 0.02
18 10 0.17
19 32 0.53
20 17 0.28
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (19 bp):
TAAATTTTATAATTTTTAA
Found at i:51558049 original size:49 final size:49
Alignment explanation
Indices: 51557941--51558158 Score: 141
Period size: 49 Copynumber: 4.6 Consensus size: 49
51557931 ATCAAATTCA
* *
51557941 ATGCCATGTCCCAAACAGGTCTTACACTGACTTTTATATATCGAGGCTG
1 ATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGAGGCTG
* * * * * *
51557990 ATGTCGTGTCCCATACAGGTCTTACATTGGCTCTCATCTATC-AGTG-TCG
1 ATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGAG-GCT-G
* * * * * *
51558039 ATGCCATGTCCTAGACAGGTCTTGCACTGA--CACACA-A-C-AAGCTG
1 ATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGAGGCTG
* * * * * *
51558083 ACGCCATGTCCCAGACAGGTCTTATACT-AGCT-TGAATATCTCGAGGCCG
1 ATGCCATGTCCCAAACAGGTCTTACACTGA-CTCT-CATATATCGAGGCTG
*
51558132 ATG-CATGTCCCAAACATGTCTTACACT
1 ATGCCATGTCCCAAACAGGTCTTACACT
51558159 AGCTATCGTC
Statistics
Matches: 126, Mismatches: 33, Indels: 21
0.70 0.18 0.12
Matches are distributed among these distances:
43 1 0.01
44 26 0.21
45 3 0.02
46 3 0.02
47 3 0.02
48 25 0.20
49 65 0.52
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGAGGCTG
Found at i:51558195 original size:46 final size:44
Alignment explanation
Indices: 51558130--51558252 Score: 158
Period size: 46 Copynumber: 2.7 Consensus size: 44
51558120 ATCTCGAGGC
* *
51558130 CGATGCATGTCCCAAACATGTCTTACACTAGCTATCGTCTTAATGT-
1 CGATGCATGTCCCAGACATGTCTTACACTAGC--TC-TCGTAATGTG
*
51558176 CGATGCATATCCCAGACATGTCTTACACTAGCTCTCGTAATGTGG
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTAATGT-G
*
51558221 CCGATGCATGTTCCAGACATGTCTTACACTAG
1 -CGATGCATGTCCCAGACATGTCTTACACTAG
51558253 AACACATATC
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
43 8 0.12
44 2 0.03
46 59 0.86
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTAATGTG
Found at i:51563178 original size:20 final size:20
Alignment explanation
Indices: 51563144--51563181 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51563134 CTCATTAAAA
**
51563144 ATTTATTAACTTTTTAACCT
1 ATTTATTAAAATTTTAACCT
51563164 ATTTATTAAAATTTTAAC
1 ATTTATTAAAATTTTAAC
51563182 TACAATCTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTTATTAAAATTTTAACCT
Found at i:51568160 original size:26 final size:26
Alignment explanation
Indices: 51568131--51568214 Score: 86
Period size: 26 Copynumber: 3.3 Consensus size: 26
51568121 AATGACATTT
51568131 TAACCATCAACTTCTCAAGCACCAAA
1 TAACCATCAACTTCTCAAGCACCAAA
* **
51568157 TAACCAT-TAC-T-AGAA-CTACCAAA
1 TAACCATCAACTTCTCAAGC-ACCAAA
51568180 CCTAACCATCAACTTCTCAAGCACCAAA
1 --TAACCATCAACTTCTCAAGCACCAAA
51568208 TAACCAT
1 TAACCAT
51568215 TACTAGAACT
Statistics
Matches: 45, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
22 1 0.02
23 8 0.18
24 1 0.02
25 9 0.20
26 16 0.36
27 1 0.02
28 8 0.18
29 1 0.02
ACGTcount: A:0.43, C:0.33, G:0.04, T:0.20
Consensus pattern (26 bp):
TAACCATCAACTTCTCAAGCACCAAA
Found at i:51568207 original size:51 final size:51
Alignment explanation
Indices: 51568131--51568230 Score: 200
Period size: 51 Copynumber: 2.0 Consensus size: 51
51568121 AATGACATTT
51568131 TAACCATCAACTTCTCAAGCACCAAATAACCATTACTAGAACTACCAAACC
1 TAACCATCAACTTCTCAAGCACCAAATAACCATTACTAGAACTACCAAACC
51568182 TAACCATCAACTTCTCAAGCACCAAATAACCATTACTAGAACTACCAAA
1 TAACCATCAACTTCTCAAGCACCAAATAACCATTACTAGAACTACCAAA
51568231 TCTATTCAAG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.44, C:0.32, G:0.04, T:0.20
Consensus pattern (51 bp):
TAACCATCAACTTCTCAAGCACCAAATAACCATTACTAGAACTACCAAACC
Found at i:51574599 original size:31 final size:30
Alignment explanation
Indices: 51574530--51574596 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
51574520 TATAAGATAG
* *
51574530 ATTTTTTACGAAATAAGATATAAAGAAAGT
1 ATTTTTTGCAAAATAAGATATAAAGAAAGT
*
51574560 ATTTTTTGCAAAATTAGATATAAAGAAAGT
1 ATTTTTTGCAAAATAAGATATAAAGAAAGT
51574590 ATTTTTT
1 ATTTTTT
51574597 TGCGAATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.40
Consensus pattern (30 bp):
ATTTTTTGCAAAATAAGATATAAAGAAAGT
Found at i:51574605 original size:30 final size:29
Alignment explanation
Indices: 51574530--51574605 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 29
51574520 TATAAGATAG
* *
51574530 ATTTTTTACGAAATAAGATATAAAGAAAGT
1 ATTTTTTGCG-AATTAGATATAAAGAAAGT
*
51574560 ATTTTTTGCAAAATTAGATATAAAGAAAGT
1 ATTTTTTGC-GAATTAGATATAAAGAAAGT
51574590 ATTTTTTTGCGAATTA
1 A-TTTTTTGCGAATTA
51574606 TAAAGAAAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
30 32 0.80
31 8 0.20
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.39
Consensus pattern (29 bp):
ATTTTTTGCGAATTAGATATAAAGAAAGT
Found at i:51575520 original size:16 final size:16
Alignment explanation
Indices: 51575490--51575530 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
51575480 AAATAAAATA
51575490 GTATTTATT--TAAGT
1 GTATTTATTAATAAGT
51575504 GTATTTATTAATAAGT
1 GTATTTATTAATAAGT
51575520 GTATTTATTAA
1 GTATTTATTAA
51575531 AACAATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.36
16 16 0.64
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (16 bp):
GTATTTATTAATAAGT
Found at i:51578855 original size:46 final size:45
Alignment explanation
Indices: 51578801--51578959 Score: 128
Period size: 46 Copynumber: 3.4 Consensus size: 45
51578791 AGTGAAATTG
51578801 GACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTC
1 GACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTC
* * * * *
51578846 AGACTCAACTCAATGAGCTCGGATGTCTAGTT-ACAT-C-TTA-CGAAATC
1 -GACTCAACTCAACGAGCTC-GA-G-C--GTTCGCATCCATAAGTGAACTC
* * * *
51578893 GGACTTAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTC
1 -GACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTC
*
51578939 GAACTCAACTCAACAAGCTCG
1 G-ACTCAACTCAACGAGCTCG
51578960 GATGCCCAAA
Statistics
Matches: 85, Mismatches: 18, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
42 2 0.02
43 3 0.04
44 2 0.02
45 3 0.04
46 40 0.47
47 24 0.28
48 3 0.04
49 2 0.02
50 3 0.04
51 3 0.04
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (45 bp):
GACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTC
Found at i:51578910 original size:93 final size:93
Alignment explanation
Indices: 51578794--51578963 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
51578784 GCCAATAAGT
* * * *
51578794 GAAATTGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTC-AGACTCAACTCA
1 GAAATCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTCGA-ACTCAACTCA
**
51578858 ATGAGCTCGGATGTCTAGTTACATCTTAC
65 ACAAGCTCGGATGTCTAGTTACATCTTAC
*
51578887 GAAATCGGACTTAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAAATCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
51578952 CAAGCTCGGATG
66 CAAGCTCGGATG
51578964 CCCAAATATC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
93 68 0.99
94 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.22
Consensus pattern (93 bp):
GAAATCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CAAGCTCGGATGTCTAGTTACATCTTAC
Found at i:51579396 original size:30 final size:30
Alignment explanation
Indices: 51579362--51579419 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
51579352 CCCTAGTACG
*
51579362 AACTTTTACAAAATTACTA-TTTTGCCCCTA
1 AACTTTCACAAAATTAC-ACTTTTGCCCCTA
* *
51579392 AACTTTCACATATTTACACTTTTGCCCC
1 AACTTTCACAAAATTACACTTTTGCCCC
51579420 AAGGCTCGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.29, C:0.28, G:0.03, T:0.40
Consensus pattern (30 bp):
AACTTTCACAAAATTACACTTTTGCCCCTA
Found at i:51587543 original size:40 final size:39
Alignment explanation
Indices: 51587499--51587665 Score: 253
Period size: 39 Copynumber: 4.3 Consensus size: 39
51587489 TATGGTAACC
** *
51587499 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
51587539 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
51587578 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
51587617 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
51587656 CGCACAATTG
1 CGCACAATTG
51587666 TTCACATCTT
Statistics
Matches: 117, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 101 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:51594842 original size:40 final size:39
Alignment explanation
Indices: 51594778--51594977 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 39
51594768 GCTACTCGTT
* * * ** *
51594778 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
51594818 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* * *
51594858 CAATTGCCTTCCGGCTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
51594897 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
51594936 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
51594975 CAA
1 CAA
51594978 TTGTTCACAT
Statistics
Matches: 143, Mismatches: 17, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 99 0.69
40 44 0.31
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:51594895 original size:39 final size:39
Alignment explanation
Indices: 51594814--51594980 Score: 262
Period size: 39 Copynumber: 4.3 Consensus size: 39
51594804 TATGGTAACC
* *
51594814 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
51594854 CGCACAATTGCCTTCCGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
51594893 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
51594932 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
51594971 CGCACAATTG
1 CGCACAATTG
51594981 TTCACATCTT
Statistics
Matches: 118, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 102 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:51596695 original size:46 final size:46
Alignment explanation
Indices: 51596628--51596803 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
51596618 TGTAACCCGC
*
51596628 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
51596674 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGTCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-G--GAC-A-TTCGCAT
* * * * *
51596724 -C-TCA-CGAACTTGGACTCAACTAAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * *
51596767 TCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
51596804 TGCCCAAATA
Statistics
Matches: 102, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 2 0.02
46 56 0.55
47 24 0.24
48 2 0.02
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:51596750 original size:93 final size:93
Alignment explanation
Indices: 51596635--51596805 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
51596625 CGCCCATAAG
* * * *
51596635 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTAAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
51596700 ACGAGCTCAGATGTCTAGTTACATCTCA
66 ACGAGCTCAGATGTCTAGTTACATCTCA
* * *
51596728 CGAACTTGGACTCAACTAAACGAGTTCAGACATTCGCATTCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTAAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
* *
51596793 ATGAGCTCGGATG
66 ACGAGCTCAGATG
51596806 CCCAAATATC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTAAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCAGATGTCTAGTTACATCTCA
Found at i:51599672 original size:40 final size:40
Alignment explanation
Indices: 51599431--51599658 Score: 397
Period size: 40 Copynumber: 5.7 Consensus size: 40
51599421 TATTCGGATG
* *
51599431 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51599471 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51599510 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51599550 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51599590 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51599630 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
51599659 AGCAAGTAGC
Statistics
Matches: 181, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
39 36 0.20
40 145 0.80
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51599672 original size:120 final size:119
Alignment explanation
Indices: 51599431--51599691 Score: 393
Period size: 119 Copynumber: 2.2 Consensus size: 119
51599421 TATTCGGATG
* *
51599431 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* * *
51599496 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
*
51599550 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
51599614 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
64 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CT
* * *
51599670 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
51599692 TACTTGGTTT
Statistics
Matches: 130, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
118 2 0.02
119 64 0.49
120 64 0.49
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
Found at i:51607606 original size:40 final size:40
Alignment explanation
Indices: 51607497--51607719 Score: 337
Period size: 40 Copynumber: 5.7 Consensus size: 40
51607487 TATTCGGATG
* * * *
51607497 ATAACCGGGCTATGTCCCGAAGTCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51607537 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51607576 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51607616 ATAACCGGGCTAAGTCTCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51607656 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51607695 ATAACCGGGCTAAGT-CCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCAT
51607720 AAAGTTCCGG
Statistics
Matches: 169, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
38 9 0.05
39 63 0.37
40 97 0.57
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51607698 original size:79 final size:79
Alignment explanation
Indices: 51607497--51607719 Score: 342
Period size: 79 Copynumber: 2.8 Consensus size: 79
51607487 TATTCGGATG
* * * * * *
51607497 ATAACCGGGCTATGTCCCGAAGTCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCGAAGGCA
*
51607561 TTTGTGCGAGTTACT
65 TTTGTACGAGTTACT
*
51607576 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCTCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTC-CGAAGGCA
51607641 TTTGTACGAGTTACT
65 TTTGTACGAGTTACT
51607656 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCAT
51607720 AAAGTTCCGG
Statistics
Matches: 133, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
78 9 0.07
79 77 0.58
80 47 0.35
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCAT
TTGTACGAGTTACT
Found at i:51607708 original size:119 final size:118
Alignment explanation
Indices: 51607497--51607719 Score: 333
Period size: 119 Copynumber: 1.9 Consensus size: 118
51607487 TATTCGGATG
* * * * *
51607497 ATAACCGGGCTATGTCCCGAAGTCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
*
51607562 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGTGCGAGTTACTATAACCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT
* *
51607616 ATAACCGGGCTAAGTCTCGAAGGCATTTGTACGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
51607680 A-TTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCAT
64 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCAT
51607720 AAAGTTCCGG
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
118 12 0.13
119 72 0.77
120 10 0.11
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (118 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT
Found at i:51617100 original size:20 final size:20
Alignment explanation
Indices: 51617053--51617093 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
51617043 CGAAATGACC
*
51617053 CAGGGCCATTTTGGGCCAAG
1 CAGGGCCATTTGGGGCCAAG
51617073 CAGGGCCATTTGGGGCCAAG
1 CAGGGCCATTTGGGGCCAAG
51617093 C
1 C
51617094 TAGGCCAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.27, G:0.37, T:0.17
Consensus pattern (20 bp):
CAGGGCCATTTGGGGCCAAG
Found at i:51617106 original size:20 final size:20
Alignment explanation
Indices: 51617065--51617106 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
51617055 GGGCCATTTT
**
51617065 GGGCCAAGCAGGGCCATTTG
1 GGGCCAAGCAGGGCCAAGTG
51617085 GGGCCAAGCTA-GGCCAAGTG
1 GGGCCAAGC-AGGGCCAAGTG
51617105 GG
1 GG
51617107 CCCATTGGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.21, C:0.24, G:0.43, T:0.12
Consensus pattern (20 bp):
GGGCCAAGCAGGGCCAAGTG
Found at i:51620526 original size:20 final size:20
Alignment explanation
Indices: 51620496--51620543 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
51620486 CCTATACACC
* *
51620496 CATGTGCAACCTCACATGCT
1 CATGTGTAACCTCACACGCT
*
51620516 CGTGTGTAACCTCACACGCT
1 CATGTGTAACCTCACACGCT
51620536 CATGTGTA
1 CATGTGTA
51620544 TGGACCGTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (20 bp):
CATGTGTAACCTCACACGCT
Found at i:51621678 original size:40 final size:40
Alignment explanation
Indices: 51621581--51621762 Score: 150
Period size: 40 Copynumber: 4.5 Consensus size: 40
51621571 AGAGCATTCT
* * * * *
51621581 TTTCAATAGATTCAATAGGTATGGCTTGAGAGCACTTACA
1 TTTCAGTAGATTCAGTAGGTATGGCTTGAAAGCGCATACA
* * * * * *
51621621 TTTTAGTATATTTAGTAGGTATGGCTTGAAAGTGCAAACG
1 TTTCAGTAGATTCAGTAGGTATGGCTTGAAAGCGCATACA
**
51621661 TTTCAGTAGATTCAGTAGGTATGGCTCAAAAGCGCATACA
1 TTTCAGTAGATTCAGTAGGTATGGCTTGAAAGCGCATACA
* * * ** * **
51621701 TTTCTGTAGATTCAATAAGTAT-TATTCGAAAGCCCATAGG
1 TTTCAGTAGATTCAGTAGGTATGGCTT-GAAAGCGCATACA
*
51621741 TTTCAGTAGATTCAATAGGTAT
1 TTTCAGTAGATTCAGTAGGTAT
51621763 CGCTCATCCA
Statistics
Matches: 110, Mismatches: 31, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
39 1 0.01
40 109 0.99
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (40 bp):
TTTCAGTAGATTCAGTAGGTATGGCTTGAAAGCGCATACA
Found at i:51626501 original size:13 final size:13
Alignment explanation
Indices: 51626483--51626510 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
51626473 TGTTTAAAAG
51626483 TTAGAATATTACC
1 TTAGAATATTACC
51626496 TTAGAATATTACC
1 TTAGAATATTACC
51626509 TT
1 TT
51626511 TACCTTTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (13 bp):
TTAGAATATTACC
Found at i:51631643 original size:40 final size:40
Alignment explanation
Indices: 51631596--51631743 Score: 145
Period size: 40 Copynumber: 3.7 Consensus size: 40
51631586 ATAACCACAA
* **
51631596 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATTTGGTAACCC
* * ***
51631636 GCGCAATTGCCTTCGGGTCTTAGCCCGGATATAACAACCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATTTGGTAACCC
* **
51631676 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATTTGGTCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATTTGGTAACCC
* * * *
51631716 GCATAAATGCCTTCGAGACTTAGCCCGG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG
51631744 GTATCATTCA
Statistics
Matches: 87, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 2 0.02
40 83 0.95
41 2 0.02
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATTTGGTAACCC
Found at i:51631727 original size:80 final size:80
Alignment explanation
Indices: 51631580--51631743 Score: 213
Period size: 80 Copynumber: 2.0 Consensus size: 80
51631570 CGGGATTCAA
* * * *
51631580 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCGCAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTAGCACAAATG
* *
51631645 CCTTCGGGTCTTAGC
66 CCTTCGAGACTTAGC
** * * *
51631660 CCGGATATAACAACCCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATTTGGTCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTAGCACAAAT
51631724 GCCTTCGAGACTTAGC
65 GCCTTCGAGACTTAGC
51631740 CCGG
1 CCGG
51631744 GTATCATTCA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 70 0.97
81 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTAGCACAAATG
CCTTCGAGACTTAGC
Found at i:51636390 original size:28 final size:28
Alignment explanation
Indices: 51636358--51636456 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
51636348 GCCATAAGCC
*
51636358 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
51636386 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
51636414 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
51636443 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51636457 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:51643600 original size:28 final size:28
Alignment explanation
Indices: 51643568--51643666 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
51643558 TGCATAAGCC
*
51643568 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
51643596 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
51643624 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
51643653 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51643667 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:51648545 original size:44 final size:44
Alignment explanation
Indices: 51648495--51648586 Score: 184
Period size: 44 Copynumber: 2.1 Consensus size: 44
51648485 ATGAAAGTAG
51648495 ATTCATCAAGGTTCATTTACATAATTTATTCGCTATTTAATACC
1 ATTCATCAAGGTTCATTTACATAATTTATTCGCTATTTAATACC
51648539 ATTCATCAAGGTTCATTTACATAATTTATTCGCTATTTAATACC
1 ATTCATCAAGGTTCATTTACATAATTTATTCGCTATTTAATACC
51648583 ATTC
1 ATTC
51648587 CTACTATTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.32, C:0.18, G:0.07, T:0.43
Consensus pattern (44 bp):
ATTCATCAAGGTTCATTTACATAATTTATTCGCTATTTAATACC
Found at i:51649503 original size:40 final size:40
Alignment explanation
Indices: 51649373--51649518 Score: 132
Period size: 40 Copynumber: 3.6 Consensus size: 40
51649363 TATAACCACA
* * * * * *
51649373 AGCACAATTGCCTTCGGGTCTTAACCCAGATTTGGTAACT
1 AGCACAAATGCCTTCGAGTCTTAGCCCGGATTTGATCACT
* * * * *
51649413 TGCACAATTGCCTTCGAGTCTTAGCCCGGATAT-AACAACC
1 AGCACAAATGCCTTCGAGTCTTAGCCCGGATTTGATC-ACT
* * *
51649453 CGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGATCACT
1 AGCACAAATGCCTTCGAGTCTTAGCCCGGATTTGATCACT
* *
51649493 AGCATAAATGCCTTCGAGACTTAGCC
1 AGCACAAATGCCTTCGAGTCTTAGCC
51649519 GGGTATCATT
Statistics
Matches: 83, Mismatches: 21, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
40 81 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
AGCACAAATGCCTTCGAGTCTTAGCCCGGATTTGATCACT
Found at i:51649505 original size:80 final size:80
Alignment explanation
Indices: 51649358--51649518 Score: 207
Period size: 80 Copynumber: 2.0 Consensus size: 80
51649348 CAGGATTCAA
* * * *
51649358 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCAGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCAGATTTGATAACTAGCACAAATG
*
51649423 CCTTCGAGTCTTAGC
66 CCTTCGAGACTTAGC
** * * * *
51649438 CCGGATATAACAACCCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATTTGATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCAGATTTGATAACTAGCACAAAT
51649502 GCCTTCGAGACTTAGC
65 GCCTTCGAGACTTAGC
51649518 C
1 C
51649519 GGGTATCATT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
80 67 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCAGATTTGATAACTAGCACAAATG
CCTTCGAGACTTAGC
Found at i:51652156 original size:3 final size:3
Alignment explanation
Indices: 51652144--51652418 Score: 89
Period size: 3 Copynumber: 90.3 Consensus size: 3
51652134 AAAACGATAG
* * * * * *
51652144 TAA T-A TAA TAA TAT TGA TAA TGA TAA TAA TAG TAG TAA TAA TAA TGTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * * * *
51652192 TGA -AA TAA TAA TAA TATA TAC TAA TAA CAA CAA TAA T-A TGAA AAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA T-AA TAA
* * * *
51652237 TAA GAAA TAA CAA TACA CTAA TAA GT-A TAG TAA TAGA TCAC TAA TAA
1 TAA -TAA TAA TAA TA-A -TAA TAA -TAA TAA TAA TA-A T-AA TAA TAA
* * * *** *
51652284 TAG TAA -AA -AA TAA TAA TAA T-A TAT TAC TAA GGG TAA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * *
51652329 AAA TAG TAA T-A TAA TAA TAA TAA TAA TAG TAG TAG TAG TAA TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
51652376 TTAA TAG TAA TAA TAAA TAA CAGA AAA TAA TAA TAA AAA TAA T
1 -TAA TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA T
51652419 TAATTTGAAA
Statistics
Matches: 200, Mismatches: 53, Indels: 38
0.69 0.18 0.13
Matches are distributed among these distances:
2 14 0.07
3 161 0.81
4 22 0.11
5 3 0.01
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:51653133 original size:12 final size:12
Alignment explanation
Indices: 51653116--51653140 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51653106 GAAACAAAGG
51653116 AGAAAAAAGAAA
1 AGAAAAAAGAAA
51653128 AGAAAAAAGAAA
1 AGAAAAAAGAAA
51653140 A
1 A
51653141 TGATAAAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AGAAAAAAGAAA
Found at i:51656037 original size:26 final size:26
Alignment explanation
Indices: 51655942--51656184 Score: 303
Period size: 26 Copynumber: 9.8 Consensus size: 26
51655932 CCTCTTTAAT
51655942 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
51655967 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
51655992 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
51656017 AACTGATGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
51656043 AACTGGGGCATAAGCCC-CTT---TA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
51656065 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
51656091 AACTGAGGCATAAGCCC--TT---TA
1 AACTGGGGCATAAGCCCTTTTCGGTA
51656112 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* * **
51656138 AACTGAGGCATAATCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
51656164 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
51656185 GCACTTCCTC
Statistics
Matches: 188, Mismatches: 20, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
21 18 0.10
22 18 0.10
23 4 0.02
24 2 0.01
25 58 0.31
26 88 0.47
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:51656084 original size:21 final size:21
Alignment explanation
Indices: 51656041--51656131 Score: 110
Period size: 21 Copynumber: 4.0 Consensus size: 21
51656031 CCCTTTTCGG
51656041 TAAACTGGGGCATAAGCCCCTT
1 TAAACTGGGGCATAAG-CCCTT
*
51656063 TAAACTAGGGCATAAGCCCTTTT
1 TAAACTGGGGCATAAGCCC--TT
*
51656086 CGGTAAACTGAGGCATAAGCCCTT
1 ---TAAACTGGGGCATAAGCCCTT
51656110 TAAACTGGGGCATAAGCCCTT
1 TAAACTGGGGCATAAGCCCTT
51656131 T
1 T
51656132 TCGGTAAACT
Statistics
Matches: 60, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
21 24 0.40
22 15 0.25
23 2 0.03
24 2 0.03
26 17 0.28
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (21 bp):
TAAACTGGGGCATAAGCCCTT
Found at i:51656156 original size:121 final size:120
Alignment explanation
Indices: 51655942--51656180 Score: 338
Period size: 121 Copynumber: 2.0 Consensus size: 120
51655932 CCTCTTTAAT
* *
51655942 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCAAAGCC
1 AACTAGGGCAAAGCCCTTTTCGGTAAACTGAGGCAAAGCCC-TTT--GTAAACTGGGGCAAAGCC
* **
51656007 CTTTTCAATAAACTGATGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCCTTTA
63 CTTTTCAATAAACTGAGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCCTTTA
51656065 AACTAGGGCATAAGCCCTTTTCGGTAAACTGAGGCATAAGCCC-TT-TAAACTGGGGCATAAGCC
1 AACTAGGGCA-AAGCCCTTTTCGGTAAACTGAGGCA-AAGCCCTTTGTAAACTGGGGCA-AAGCC
** *
51656128 CTTTTCGGTAAACTGAGGCATAATCCCTTTTCAATAAACTGGGGCATAAGCCC
63 CTTTTCAATAAACTGAGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCC
51656181 TTTTGCACTT
Statistics
Matches: 105, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
120 12 0.11
121 52 0.50
123 11 0.10
124 24 0.23
125 6 0.06
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (120 bp):
AACTAGGGCAAAGCCCTTTTCGGTAAACTGAGGCAAAGCCCTTTGTAAACTGGGGCAAAGCCCTT
TTCAATAAACTGAGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCCTTTA
Found at i:51656166 original size:73 final size:73
Alignment explanation
Indices: 51655965--51656183 Score: 272
Period size: 73 Copynumber: 3.0 Consensus size: 73
51655955 CCCTTTTCGG
* *
51655965 TAAACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATAAACTGATGCAT
1 TAAACTGGGGCATAAGCCCTTTTCGGTAAACTGAGGCATAAGCCCTTTTCAATAAACTGAGGCAT
51656028 AAGCCCTTTT
66 AAGCCC--TT
* **
51656038 CGGTAAACTGGGGCATAAGCCC-CTT---TAAACT-AGGGCATAAGCCCTTTTCGGTAAACTGAG
1 ---TAAACTGGGGCATAAGCCCTTTTCGGTAAACTGA-GGCATAAGCCCTTTTCAATAAACTGAG
51656098 GCATAAGCCCTT
62 GCATAAGCCCTT
* *
51656110 TAAACTGGGGCATAAGCCCTTTTCGGTAAACTGAGGCATAATCCCTTTTCAATAAACTGGGGCAT
1 TAAACTGGGGCATAAGCCCTTTTCGGTAAACTGAGGCATAAGCCCTTTTCAATAAACTGAGGCAT
51656175 AAGCCCTT
66 AAGCCCTT
51656183 T
1 T
51656184 TGCACTTCCT
Statistics
Matches: 125, Mismatches: 10, Indels: 19
0.81 0.06 0.12
Matches are distributed among these distances:
69 19 0.15
70 2 0.02
72 2 0.02
73 52 0.42
74 30 0.24
76 14 0.11
77 6 0.05
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (73 bp):
TAAACTGGGGCATAAGCCCTTTTCGGTAAACTGAGGCATAAGCCCTTTTCAATAAACTGAGGCAT
AAGCCCTT
Found at i:51657022 original size:27 final size:27
Alignment explanation
Indices: 51656987--51657079 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
51656977 GGGCATATTC
*
51656987 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
51657014 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
* * *
51657041 ATCACTTCACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
**
51657068 GTCTTTTTACCA
1 GTCACTTTACCA
51657080 ATAGGGGTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:51657161 original size:27 final size:27
Alignment explanation
Indices: 51657135--51657414 Score: 165
Period size: 27 Copynumber: 10.3 Consensus size: 27
51657125 ATCTACAAAC
*
51657135 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
51657162 CAATGGTATTTCCA-TAATTTT-TAGAAAGT
1 CAAGGGTATTT-CAGTAATTTTGT--AAA-T
* * * *
51657191 CAATGGTATTTCTGTAACTTTATAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** **
51657218 CAAGGGTATTTTGGTAATTTTACAAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAA-T
* ** * *
51657246 -AGGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTCAGTAATTTT-GTAAAT
* ** * *
51657272 CGAGGGTATTTTGGTAATTTTCTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
51657299 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ***
51657326 CGAGGGTAAAACAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
***
51657353 CAAGGGTAAAACAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** *
51657380 TAAGGGTAAAAT-AGTAATTTTATAAAT
1 CAAGGGT-ATTTCAGTAATTTTGTAAAT
*
51657407 CGAGGGTA
1 CAAGGGTA
51657415 AAACGGTAAT
Statistics
Matches: 210, Mismatches: 32, Indels: 23
0.79 0.12 0.09
Matches are distributed among these distances:
26 5 0.02
27 174 0.83
28 13 0.06
29 17 0.08
30 1 0.00
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:51657333 original size:81 final size:83
Alignment explanation
Indices: 51657131--51657333 Score: 189
Period size: 81 Copynumber: 2.5 Consensus size: 83
51657121 GTAAATCTAC
* * * * * *
51657131 AAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCCATAATTTTTAGAAAGTCAATG
1 AAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTATTTCCATAATTTTTACAAAGTCAAGG
51657196 GTATTTCTGTAACTTTAT
66 GTATTTCTGTAACTTTAT
* * ** * *** ** *
51657214 AAATCAAGGGTATTTTGGTAATTTTACAAAGTAG-GGGTATTTTGGTAA-TTTTACTGA-TCGAG
1 AAACCAAGGGTATTTTAGTAATTTTGTAAA-TCGAGGGTATTTCCATAATTTTTACAAAGTCAAG
* *
51657276 GGTATTT-TGGTAATTTTCT
65 GGTATTTCT-GTAACTTTAT
51657295 AAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
51657334 AAACAGTAAT
Statistics
Matches: 93, Mismatches: 24, Indels: 8
0.74 0.19 0.06
Matches are distributed among these distances:
80 3 0.03
81 49 0.53
82 6 0.06
83 35 0.38
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (83 bp):
AAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTATTTCCATAATTTTTACAAAGTCAAGG
GTATTTCTGTAACTTTAT
Found at i:51657343 original size:81 final size:81
Alignment explanation
Indices: 51657270--51657454 Score: 217
Period size: 81 Copynumber: 2.3 Consensus size: 81
51657260 AATTTTACTG
* *** *
51657270 ATCGAGGGTATTTTGGTAATTTTCTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTCTAAACCAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAA
*
51657335 AACAGTAATTTTGTAA
66 AACAGTAATTTTATAA
* **** * **
51657351 ATCAAGGGTAAAACAGTAATTTTGTAAATTAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTCTAAACCAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAA
* *
51657416 AACGGTAATTCTATAA
66 AACAGTAATTTTATAA
*
51657432 ATCGAGGGTACTTTGGTAATTTT
1 ATCGAGGGTAATTTGGTAATTTT
51657455 ACAATTTGAG
Statistics
Matches: 82, Mismatches: 22, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.36
Consensus pattern (81 bp):
ATCGAGGGTAATTTGGTAATTTTCTAAACCAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAA
AACAGTAATTTTATAA
Found at i:51657415 original size:27 final size:27
Alignment explanation
Indices: 51657311--51657441 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
51657301 AGGGTATTTT
51657311 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
*
51657338 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
** *
51657365 AGTAATTTTGTAAATTAAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGTAAAAC
*
51657392 AGTAATTTTATAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* * *
51657419 GGTAATTCTATAAATCGAGGGTA
1 AGTAATTTTGTAAATCGAGGGTA
51657442 CTTTGGTAAT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (27 bp):
AGTAATTTTGTAAATCGAGGGTAAAAC
Found at i:51658793 original size:40 final size:40
Alignment explanation
Indices: 51658660--51658844 Score: 136
Period size: 40 Copynumber: 4.6 Consensus size: 40
51658650 TCTTTTCAAG
* * * * * * *
51658660 AGATTCAGTAAGTATGGCTTGAGAGCGCAAACGTTTCAGT
1 AGATTCAATAGGTATGGCTCGAAAGCACATATGTTTCAGT
* * ** *
51658700 AGATTCAATAGGCATGGCTTGAAAGTGCATATGTTTTAGT
1 AGATTCAATAGGTATGGCTCGAAAGCACATATGTTTCAGT
* *
51658740 AGATTCAGTAGGTATGGCTCGGAAGCACATATGTTTCAGT
1 AGATTCAATAGGTATGGCTCGAAAGCACATATGTTTCAGT
* * *** * * * * *
51658780 AAATTCAACAGGTATCATTTGAAATCCCATAGGTTTCCGT
1 AGATTCAATAGGTATGGCTCGAAAGCACATATGTTTCAGT
* *
51658820 AGATTTAATAGGTATTGCTCGAAAG
1 AGATTCAATAGGTATGGCTCGAAAG
51658845 TGTATACATT
Statistics
Matches: 110, Mismatches: 35, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
40 110 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (40 bp):
AGATTCAATAGGTATGGCTCGAAAGCACATATGTTTCAGT
Found at i:51661482 original size:19 final size:19
Alignment explanation
Indices: 51661458--51661500 Score: 79
Period size: 18 Copynumber: 2.3 Consensus size: 19
51661448 TTTAGCTCCA
51661458 TTTTTAATAATTTCTACGT
1 TTTTTAATAATTTCTACGT
51661477 TTTTT-ATAATTTCTACGT
1 TTTTTAATAATTTCTACGT
51661495 TTTTTA
1 TTTTTA
51661501 GATCGTTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.23, C:0.09, G:0.05, T:0.63
Consensus pattern (19 bp):
TTTTTAATAATTTCTACGT
Found at i:51662836 original size:14 final size:14
Alignment explanation
Indices: 51662817--51662845 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
51662807 TTAAAACCAT
51662817 ATGTGTTTTGAATG
1 ATGTGTTTTGAATG
51662831 ATGTGTTTTGAATG
1 ATGTGTTTTGAATG
51662845 A
1 A
51662846 ATAAACTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (14 bp):
ATGTGTTTTGAATG
Found at i:51664634 original size:40 final size:40
Alignment explanation
Indices: 51664590--51664732 Score: 164
Period size: 40 Copynumber: 3.5 Consensus size: 40
51664580 TTTGCACAAT
*
51664590 TGCCTTCAGGAATTAGCCCGGATTTAGTAACTCGCACGAA
1 TGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAA
* * *
51664630 TGCCTTCGGGACTTAACCC-GATTTTGGTAACTCGCACGAA
1 TGCCTTCGGGAATTAGCCCGGA-TTTAGTAACTCGCACGAA
* * *
51664670 TGCCTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAA
1 TGCCTTCGGGAATTAG-CCCGGATTTAGTAAC-TCGCACGAA
* *
51664711 AGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGAATTAGCCCGGA
51664733 CACCATTCGA
Statistics
Matches: 86, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
39 2 0.02
40 56 0.65
41 27 0.31
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAA
Found at i:51672822 original size:39 final size:40
Alignment explanation
Indices: 51672768--51672921 Score: 204
Period size: 39 Copynumber: 3.9 Consensus size: 40
51672758 TGTGAATGAA
* *
51672768 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
51672807 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* * *
51672846 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* ** * *
51672886 TGTGCGGGTTACCATAACCGGGCTACGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGG
51672922 TGTTTTGAAC
Statistics
Matches: 102, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 62 0.61
40 40 0.39
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (40 bp):
TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:51672907 original size:79 final size:79
Alignment explanation
Indices: 51672768--51672921 Score: 220
Period size: 79 Copynumber: 1.9 Consensus size: 79
51672758 TGTGAATGAA
** *
51672768 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
51672833 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * *
51672846 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTA
*
51672911 CGTCCCGAAGG
65 AGTCCCGAAGG
51672922 TGTTTTGAAC
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
78 25 0.38
79 33 0.50
80 8 0.12
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:51675791 original size:37 final size:36
Alignment explanation
Indices: 51675741--51675827 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
51675731 TACAAAGTCT
51675741 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
51675777 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
51675814 TCACCCGGAACATA
1 T-ACCCGG-ACATA
51675828 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:51675944 original size:49 final size:49
Alignment explanation
Indices: 51675891--51676499 Score: 975
Period size: 49 Copynumber: 12.4 Consensus size: 49
51675881 TCGGCTTTAC
* * *
51675891 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
* * *
51675940 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTGAT
1 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
* *
51675989 CACATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCAT
1 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
* * *
51676038 CACATATATATACATTTTCACGTTCATCACATCGGCCATTAGGCCTTAT
1 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
* *
51676087 CACATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCAT
1 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
* *
51676136 CACATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCAT
1 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
* * *
51676185 CACATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTGAT
1 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
51676234 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
1 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
* * *
51676283 CACATATATATACATTTTCACATTCATCCCATCGGCCATTAGGCCTTAT
1 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
* *
51676332 CACATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCAT
1 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
* *
51676381 CACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
*
51676430 CACATATACATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCAT
1 CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
*
51676479 CACATATATATACATTTTCAC
1 CACATATACATACATTTTCAC
51676500 GAATCTTGAT
Statistics
Matches: 518, Mismatches: 42, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
49 518 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (49 bp):
CACATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCAT
Found at i:51676211 original size:27 final size:27
Alignment explanation
Indices: 51676132--51676212 Score: 64
Period size: 27 Copynumber: 3.2 Consensus size: 27
51676122 CCATTAGGCC
*
51676132 TCATCACATATATATACATTTTCGCAT
1 TCATCACATATACATACATTTTCGCAT
*** ** *
51676159 TCATCAC--AT-CGGCCA-TTAGGC-C
1 TCATCACATATACATACATTTTCGCAT
51676181 TCATCACATATACATACATTTTCGCAT
1 TCATCACATATACATACATTTTCGCAT
51676208 TCATC
1 TCATC
51676213 GCATCGGCCA
Statistics
Matches: 36, Mismatches: 13, Indels: 10
0.61 0.22 0.17
Matches are distributed among these distances:
22 7 0.19
23 4 0.11
24 4 0.11
25 5 0.14
26 4 0.11
27 12 0.33
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (27 bp):
TCATCACATATACATACATTTTCGCAT
Found at i:51685358 original size:40 final size:39
Alignment explanation
Indices: 51685219--51685372 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
51685209 TGTGAATGAA
* *
51685219 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
51685258 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
51685297 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
51685337 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
51685373 TGTTTTGAAC
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:51685358 original size:79 final size:79
Alignment explanation
Indices: 51685219--51685372 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 79
51685209 TGTGAATGAA
** *
51685219 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
51685284 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
51685297 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
51685362 TGTCCCGAAGG
65 AGTCCCGAAGG
51685373 TGTTTTGAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.49
80 8 0.12
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:51688312 original size:71 final size:71
Alignment explanation
Indices: 51688228--51688391 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51688218 CGATTTGTCT
51688228 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
51688293 CTTTCA
66 CTTTCA
51688299 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
51688364 CTTTCA
66 CTTTCA
51688370 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
51688392 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:51688429 original size:71 final size:70
Alignment explanation
Indices: 51688228--51688425 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
51688218 CGATTTGTCT
* * * *
51688228 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51688293 CTTTCA
65 CTTTCA
* * * *
51688299 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51688364 CTTTCA
65 CTTTCA
* *
51688370 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
51688426 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:51695882 original size:71 final size:71
Alignment explanation
Indices: 51695798--51695961 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51695788 CGATTTGTCT
51695798 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
51695863 CTTTCA
66 CTTTCA
51695869 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
51695934 CTTTCA
66 CTTTCA
51695940 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
51695962 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:51695999 original size:71 final size:70
Alignment explanation
Indices: 51695798--51695995 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
51695788 CGATTTGTCT
* * * *
51695798 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51695863 CTTTCA
65 CTTTCA
* * * *
51695869 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51695934 CTTTCA
65 CTTTCA
* *
51695940 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
51695996 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:51698501 original size:30 final size:30
Alignment explanation
Indices: 51698465--51698565 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
51698455 GACAAGATTG
* * *
51698465 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
51698495 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
51698523 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
51698552 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
51698566 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:51698577 original size:29 final size:28
Alignment explanation
Indices: 51698494--51698569 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
51698484 AAAATTGTAC
* *
51698494 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
51698522 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
51698551 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
51698570 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:51706362 original size:30 final size:30
Alignment explanation
Indices: 51706326--51706426 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
51706316 GACAAGATTG
* * *
51706326 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
51706356 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
51706384 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
51706413 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
51706427 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:51706438 original size:29 final size:28
Alignment explanation
Indices: 51706355--51706430 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
51706345 AAAATTGTAC
* *
51706355 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
51706383 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
51706412 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
51706431 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:51729402 original size:78 final size:80
Alignment explanation
Indices: 51729272--51729455 Score: 205
Period size: 78 Copynumber: 2.3 Consensus size: 80
51729262 ACGACTCGCT
** ** * *
51729272 CAAATGCCTTCGGGACGAAGCCCGG-TTATATCGACTTGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TATTTACTCGCACGAATGCCTTC-GGATCCTAACCC
* * *
51729335 GGGTTTAGTAACTT-GCA
63 GGATATAGCAACTTAGCA
**
51729352 CAAAGCCTTCGGGA-TTAGCCCGGATTTATTTACTCGCACGAATGCCTTCGGATCCTAGTCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGATTTATTTACTCGCACGAATGCCTTCGGATCCTAACCCGGA
*
51729416 TATAGCCACTTAGCA
66 TATAGCAACTTAGCA
51729431 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
51729456 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
77 3 0.03
78 42 0.48
79 29 0.33
80 14 0.16
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTATTTACTCGCACGAATGCCTTCGGATCCTAACCCGGA
TATAGCAACTTAGCA
Found at i:51729455 original size:40 final size:39
Alignment explanation
Indices: 51729253--51729455 Score: 140
Period size: 40 Copynumber: 5.1 Consensus size: 39
51729243 CGGAATTTAA
* * * * **
51729253 CCGGATATAACGACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAGCAACTTGCACAAA-GCCTTCGGGACTTAGC
* * * * *
51729293 CCGGTTATATCGACTTGCACGAATGCCTTCGGGACTTAAC
1 CCGGATATAGCAACTTGCAC-AAAGCCTTCGGGACTTAGC
* * *
51729333 CCGGGTTTAGTAACTTGCACAAAGCCTTCGGGA-TTAGC
1 CCGGATATAGCAACTTGCACAAAGCCTTCGGGACTTAGC
* *** * * * *
51729371 CCGGATTTATTTACTCGCACGAATGCCTTC-GGATCCTAGT
1 CCGGATATAGCAACTTGCAC-AAAGCCTTCGGGA-CTTAGC
*
51729411 CCGGATATAGCCACTTAGCACAAAGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTT-GCACAAAGCCTTCGGGACTTAGC
51729451 CCGGA
1 CCGGA
51729456 CATCATTCGA
Statistics
Matches: 127, Mismatches: 30, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
38 23 0.18
39 20 0.16
40 75 0.59
41 9 0.07
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAGCAACTTGCACAAAGCCTTCGGGACTTAGC
Found at i:51733431 original size:40 final size:39
Alignment explanation
Indices: 51733387--51733529 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
51733377 GTTCAAAACA
* * ** * *
51733387 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
51733427 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
51733467 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
51733506 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
51733530 CTCGAACATT
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 52 0.57
40 40 0.43
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:51745067 original size:40 final size:40
Alignment explanation
Indices: 51745023--51745164 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
51745013 GTTCAAAACA
* * ** * *
51745023 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* *
51745063 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
*
51745103 CCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
51745142 CCTTC-GG-CTTAGCCCGGATATCA
1 CCTTCGGGACTTAGCCCGGATATCA
51745165 CTCGAACATT
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
38 18 0.20
39 33 0.36
40 40 0.44
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:51745160 original size:38 final size:39
Alignment explanation
Indices: 51745053--51745165 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
51745043 TATGGTAACC
* *
51745053 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
51745093 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
51745132 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
51745166 TCGAACATTC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
38 18 0.26
39 33 0.49
40 17 0.25
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:51747712 original size:59 final size:59
Alignment explanation
Indices: 51747645--51747762 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
51747635 GAATAGTGAT
*
51747645 GGGTTGGAAATTGTTATAGTTGCTGAAAGACATGGATTTTTCTCTAATATAGTTTCGAC
1 GGGTTGGAAATTGTTATAGTTGCTGAAAGACAGGGATTTTTCTCTAATATAGTTTCGAC
51747704 GGGTTGGAAATTGTTATAGTTGCTGAAAGACAGGGATTTTTCTCTAATATAGTTTCGAC
1 GGGTTGGAAATTGTTATAGTTGCTGAAAGACAGGGATTTTTCTCTAATATAGTTTCGAC
51747763 AATGAAAGTT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (59 bp):
GGGTTGGAAATTGTTATAGTTGCTGAAAGACAGGGATTTTTCTCTAATATAGTTTCGAC
Found at i:51750471 original size:24 final size:24
Alignment explanation
Indices: 51750419--51750497 Score: 83
Period size: 24 Copynumber: 3.3 Consensus size: 24
51750409 AACTCCTTCT
*
51750419 GAGCTGATGAACAG-AAGCTCT-AT
1 GAGCTGA-GAACAGTAAGCTCTAAC
*
51750442 GAAGCT-AGAAACTGTAAGCTCTAAC
1 G-AGCTGAG-AACAGTAAGCTCTAAC
*
51750467 GAGCTGAGAACAGTAAGCTCTTAC
1 GAGCTGAGAACAGTAAGCTCTAAC
51750491 GAGCTGA
1 GAGCTGA
51750498 TATATCGGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
22 1 0.02
23 6 0.13
24 36 0.77
25 4 0.09
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.20
Consensus pattern (24 bp):
GAGCTGAGAACAGTAAGCTCTAAC
Found at i:51758443 original size:20 final size:20
Alignment explanation
Indices: 51758418--51758457 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
51758408 CTAAAACAAG
51758418 CTCCGCTCATTATTTTACAT
1 CTCCGCTCATTATTTTACAT
51758438 CTCCGCTCATTATTTTACAT
1 CTCCGCTCATTATTTTACAT
51758458 TCACTGTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.05, T:0.45
Consensus pattern (20 bp):
CTCCGCTCATTATTTTACAT
Found at i:51760408 original size:46 final size:46
Alignment explanation
Indices: 51760341--51760515 Score: 153
Period size: 46 Copynumber: 3.8 Consensus size: 46
51760331 TGTAACCTGC
**
51760341 CCATAAGCGAACTCAAACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
* *
51760387 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* ** * *
51760437 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
* * *
51760480 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
51760516 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
46 58 0.56
47 25 0.24
48 1 0.01
49 1 0.01
50 6 0.06
51 4 0.04
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:51760454 original size:93 final size:93
Alignment explanation
Indices: 51760348--51760520 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
51760338 TGCCCATAAG
** *
51760348 CGAACTCAAACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAAACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCA
51760413 ACAAGCTCGGATGCCTAGTTACATCTCT
66 ACAAGCTCGGATGCCTAGTTACATCTCT
** * *
51760441 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAAACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCA
** *
51760506 ATGAGTTCGGATGCC
66 ACAAGCTCGGATGCC
51760521 CAAATATCCC
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.21
Consensus pattern (93 bp):
CGAACTCAAACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCT
Found at i:51763901 original size:26 final size:24
Alignment explanation
Indices: 51763817--51763902 Score: 86
Period size: 24 Copynumber: 3.5 Consensus size: 24
51763807 TTGAGTTGAT
**
51763817 GAACAG-AAGCTCTATGGAGCTG-
1 GAACAGTAAGCTCTAACGAGCTGA
*
51763839 GAAACTGTAAGCTCTAACGAGCTGA
1 G-AACAGTAAGCTCTAACGAGCTGA
*
51763864 GAACAGTAAGCTCTTACGAGCTGA
1 GAACAGTAAGCTCTAACGAGCTGA
*
51763888 TATATCAGTAAGCTC
1 GA-A-CAGTAAGCTC
51763903 ATACAACCTG
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
22 1 0.02
23 4 0.08
24 36 0.68
25 2 0.04
26 10 0.19
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (24 bp):
GAACAGTAAGCTCTAACGAGCTGA
Found at i:51764501 original size:9 final size:9
Alignment explanation
Indices: 51764487--51764519 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
51764477 CCTTCATAAT
51764487 ATATCATCA
1 ATATCATCA
51764496 ATATCATCA
1 ATATCATCA
51764505 ATATCATCA
1 ATATCATCA
51764514 ATATCA
1 ATATCA
51764520 ATTTAATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.33
Consensus pattern (9 bp):
ATATCATCA
Found at i:51767993 original size:21 final size:21
Alignment explanation
Indices: 51767964--51768004 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
51767954 GATAGCTTTG
51767964 AAATATTTGATTAAGTTCGGA
1 AAATATTTGATTAAGTTCGGA
* * *
51767985 AAATTTTTGTTTGAGTTCGG
1 AAATATTTGATTAAGTTCGG
51768005 TTTAATTTCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.05, G:0.22, T:0.44
Consensus pattern (21 bp):
AAATATTTGATTAAGTTCGGA
Found at i:51768723 original size:20 final size:20
Alignment explanation
Indices: 51768695--51768733 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51768685 CACGCTCGTG
51768695 TGGCCTGGGACATGCCCGTA
1 TGGCCTGGGACATGCCCGTA
* *
51768715 TGGCTTGGGACATGGCCGT
1 TGGCCTGGGACATGCCCGT
51768734 GGGGCCAGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.26, G:0.38, T:0.23
Consensus pattern (20 bp):
TGGCCTGGGACATGCCCGTA
Found at i:51775504 original size:31 final size:31
Alignment explanation
Indices: 51775466--51775552 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
51775456 ACAAATGACA
* *
51775466 AGTGAAAAGTGGTAGCATCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
51775497 AGTGAAAAGTGGTAGCTTTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
51775528 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
51775553 AAGTGACAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:51775649 original size:47 final size:43
Alignment explanation
Indices: 51775581--51775767 Score: 161
Period size: 42 Copynumber: 4.2 Consensus size: 43
51775571 GATTTCCGTA
51775581 TAAGACCATATCTGGGATATGGCATCAATGTGATATATGCTACTG
1 TAAGACCATATCTGGGATATGGCATCAATGTGATATATG-T-CTG
* * *
51775626 CATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCGTG
1 --TAAGACCATATCTGGGATATGGCATCAATGTGATATATG--TC-TG
* * *
51775674 TAAGACCATAGCTGGGCTATGGCATCGATATATGA-ATATG--TG
1 TAAGACCATATCTGGGATATGGCATC-A-ATGTGATATATGTCTG
* *
51775716 TAAGACCATATCTGGGCTATGGCATCATTATGTGA-AGATG--TG
1 TAAGACCATATCTGGGATATGGCATCA--ATGTGATATATGTCTG
51775758 TAAGACCATA
1 TAAGACCATA
51775768 GTTGAACTAT
Statistics
Matches: 122, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
41 1 0.01
42 49 0.40
46 24 0.20
47 42 0.34
48 6 0.05
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (43 bp):
TAAGACCATATCTGGGATATGGCATCAATGTGATATATGTCTG
Found at i:51775731 original size:42 final size:42
Alignment explanation
Indices: 51775628--51775785 Score: 160
Period size: 42 Copynumber: 3.7 Consensus size: 42
51775618 TGCTACTGCA
* * *
51775628 TAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGAT-TCGTG
1 TAAGACCATATCTGGGCTATGGCATC---GATATATG-AATAT-GTG
*
51775674 TAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGTG
1 TAAGACCATATCTGGGCTATGGCATCGATATATGAATATGTG
* *
51775716 TAAGACCATATCTGGGCTATGGCATC-ATTATGTGAAGATGTG
1 TAAGACCATATCTGGGCTATGGCATCGA-TATATGAATATGTG
**
51775758 TAAGACCATAGT-TGAACTATGGCATCGA
1 TAAGACCATA-TCTGGGCTATGGCATCGA
51775786 GAAAACGAAG
Statistics
Matches: 99, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
41 1 0.01
42 64 0.65
43 10 0.10
46 24 0.24
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTGGGCTATGGCATCGATATATGAATATGTG
Found at i:51777106 original size:20 final size:20
Alignment explanation
Indices: 51777081--51777120 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
51777071 CTAAAAAAAG
51777081 CTCCGCTCATTATTTTACAT
1 CTCCGCTCATTATTTTACAT
51777101 CTCCGCTCATTATTTTACAT
1 CTCCGCTCATTATTTTACAT
51777121 TCACTGTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.05, T:0.45
Consensus pattern (20 bp):
CTCCGCTCATTATTTTACAT
Found at i:51779654 original size:40 final size:40
Alignment explanation
Indices: 51779489--51779674 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
51779479 TCGAATGATG
*
51779489 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
51779529 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
51779569 TTCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
51779609 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51779650 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51779675 AACGAGTAGT
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 116 0.91
41 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51787754 original size:40 final size:40
Alignment explanation
Indices: 51787593--51787775 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
51787583 AATGATGTCC
* *
51787593 GGCTAAGTCCCAAAGGC-TTTGTGCTAAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* *
51787633 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCTG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
51787673 GACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAATCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* * *
51787713 GGTTAAGTCCCGAAGGCATTTGTGTGAGCTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
* *
51787753 GGCTATGTCCCAAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTTGT
51787776 ACCAGTAGTT
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 114 0.91
41 10 0.08
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:51792076 original size:38 final size:38
Alignment explanation
Indices: 51792025--51792178 Score: 247
Period size: 38 Copynumber: 4.0 Consensus size: 38
51792015 GATGTGTATG
51792025 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
51792063 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
*
51792101 AATGTGCGAGA-TATGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGA-ATTGTGATATCCGGGCTAAGCCCGAAGGC
* * *
51792139 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
51792178 A
1 A
51792179 TTTGTGCGGG
Statistics
Matches: 108, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
38 97 0.90
39 11 0.10
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (38 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
Found at i:51792201 original size:39 final size:39
Alignment explanation
Indices: 51792044--51792215 Score: 158
Period size: 38 Copynumber: 4.5 Consensus size: 39
51792034 ATTGTGATAT
* * ** *
51792044 CCGGGCTAAG-CCCGAAGGCAATGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTGACATAA
* *
51792082 CCGGGCTAAG-CCCGAAGGCAATGTGCGAGATATG--ATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAG-T-TGACATAA
** *
51792120 CCGGGCTAAG-CCCGAAGGCATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTGACATAA
* *
51792158 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTT-ACATAA
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTGACATAA
*
51792197 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51792216 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
36 2 0.02
37 1 0.01
38 73 0.61
39 31 0.26
40 12 0.10
ACGTcount: A:0.24, C:0.22, G:0.33, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTGACATAA
Found at i:51800183 original size:39 final size:39
Alignment explanation
Indices: 51800129--51800288 Score: 247
Period size: 39 Copynumber: 4.2 Consensus size: 39
51800119 TGTGTATGAA
51800129 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
51800168 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
51800207 TGTGCG-A--GATGATATCCGGGCTAAGCCCGAAGGC-AT
1 TGTGCGAATTG-TGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
51800243 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
51800283 TGTGCG
1 TGTGCG
51800289 GGTTACCATA
Statistics
Matches: 112, Mismatches: 3, Indels: 11
0.89 0.02 0.09
Matches are distributed among these distances:
36 9 0.08
37 25 0.22
38 16 0.14
39 55 0.49
40 7 0.06
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:51800210 original size:30 final size:30
Alignment explanation
Indices: 51800174--51800246 Score: 76
Period size: 37 Copynumber: 2.2 Consensus size: 30
51800164 CAATTGTGCG
51800174 AATTGTGATATCCGGGCTAAGCCCGAAGGC
1 AATTGTGATATCCGGGCTAAGCCCGAAGGC
51800204 AATTGTGCGAGATGATATCCGGGCTAAGCCCGAAGGC
1 AA-T-T----G-TGATATCCGGGCTAAGCCCGAAGGC
51800241 -ATTGTG
1 AATTGTG
51800247 CGAGTTGTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 15
0.71 0.00 0.29
Matches are distributed among these distances:
29 2 0.06
30 3 0.08
31 1 0.03
32 1 0.03
34 1 0.03
35 1 0.03
36 2 0.06
37 25 0.69
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.22
Consensus pattern (30 bp):
AATTGTGATATCCGGGCTAAGCCCGAAGGC
Found at i:51800275 original size:76 final size:76
Alignment explanation
Indices: 51800140--51800288 Score: 255
Period size: 76 Copynumber: 2.0 Consensus size: 76
51800130 GTGCGAATTG
51800140 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
51800205 ATTGTGCGAGA
66 ATTGTGCGAGA
* *
51800216 TGATATCCGGGCTAAGCCCGAAGGC-ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
*
51800280 ATTTGTGCG
65 AATTGTGCG
51800289 GGTTACCATA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
75 27 0.39
76 42 0.61
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (76 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGA
Found at i:51800304 original size:40 final size:40
Alignment explanation
Indices: 51800146--51800324 Score: 154
Period size: 39 Copynumber: 4.6 Consensus size: 40
51800136 ATTGTGATAT
* * *** *
51800146 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* ** *
51800185 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAG--ATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
*** *
51800222 CCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
51800260 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
51800300 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51800325 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
36 9 0.07
37 26 0.21
38 15 0.12
39 39 0.31
40 35 0.28
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:51807676 original size:39 final size:41
Alignment explanation
Indices: 51807624--51807734 Score: 149
Period size: 39 Copynumber: 2.8 Consensus size: 41
51807614 CTGGAAATTA
* *
51807624 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-GCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCG-TAC
*
51807664 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCGTAC
*
51807703 TATCCGGGCTAAGACCCGAAGGCATTTCGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGC
51807735 ACGTGTTATA
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
38 3 0.05
39 30 0.48
40 23 0.37
41 7 0.11
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.23
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCGTAC
Found at i:51807747 original size:40 final size:39
Alignment explanation
Indices: 51807621--51807749 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
51807611 ATGCTGGAAA
* *
51807621 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTG
* *
51807660 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-G
*
51807700 TTCTATCCGGGCTAAGACCCGAAGGCATTTCGTGC-ACGTG
1 TTATATCCGGGCTAAGACCCGAAGGCA-TTCGTGCGA-GTG
51807740 TTATATCCGG
1 TTATATCCGG
51807750 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
38 3 0.04
39 30 0.38
40 36 0.46
41 9 0.12
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTG
Found at i:51815862 original size:40 final size:40
Alignment explanation
Indices: 51815735--51815864 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
51815725 ATGCTGGAAA
* *
51815735 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
51815775 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
51815815 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
51815855 TTATATCCGG
1 TTATATCCGG
51815865 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:51820416 original size:26 final size:26
Alignment explanation
Indices: 51820386--51820493 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
51820376 TGAAATTCCC
51820386 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
51820412 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
51820438 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
51820464 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
51820490 ATCA
1 ATCA
51820494 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:51822454 original size:20 final size:20
Alignment explanation
Indices: 51822429--51822469 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
51822419 AGAGGCACAC
51822429 GCCCGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGGACAT
*
51822449 GCCCGTGTGGCTTGGGACAT
1 GCCCGTGTGGCCTGGGACAT
51822469 G
1 G
51822470 GTCATGGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.27, G:0.41, T:0.22
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGGACAT
Found at i:51830998 original size:28 final size:28
Alignment explanation
Indices: 51830929--51831029 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
51830919 GACAAGATTG
* * * *
51830929 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
51830959 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51830987 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
51831016 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
51831030 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51831023 original size:29 final size:28
Alignment explanation
Indices: 51830958--51831029 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
51830948 AAAATTGTAC
*
51830958 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
51830986 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
51831015 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51831030 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:51839036 original size:16 final size:16
Alignment explanation
Indices: 51839017--51839059 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
51839007 TTTCAAAATT
51839017 TAAAGTACGGACTAGC
1 TAAAGTACGGACTAGC
*
51839033 TAAAGTACAGACTAGC
1 TAAAGTACGGACTAGC
51839049 TAAAGTACGGA
1 TAAAGTACGGA
51839060 GCAACGATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (16 bp):
TAAAGTACGGACTAGC
Found at i:51845116 original size:29 final size:29
Alignment explanation
Indices: 51845024--51845116 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
51845014 GTATCGACGC
**
51845024 CCATCGAATATGAAAAGGGATGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGATGA
* * * **
51845053 CCATCAAACATGGAAAGGGATGGTTTTGA
1 CCATCGAATATGAAAAGGGATGGTGATGA
* *
51845082 CCATCGAATATGAAAAGAGATGGTGGTGA
1 CCATCGAATATGAAAAGGGATGGTGATGA
51845111 CCATCG
1 CCATCG
51845117 CTTAGCACAC
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTGATGA
Found at i:51849252 original size:39 final size:40
Alignment explanation
Indices: 51849152--51849336 Score: 173
Period size: 40 Copynumber: 4.7 Consensus size: 40
51849142 TCGAATGATG
* *
51849152 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
**
51849193 T-CGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
51849232 TCCGGGCTAAG-CTCGAAGGCATTGGTGCGAATTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
51849271 TCCGGGTTAAGTCCCAAAGGCATTTGTGCTAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
51849310 AACCGGGCTATGTCCCAAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51849337 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 20, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
39 37 0.31
40 72 0.61
41 9 0.08
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:51857302 original size:40 final size:40
Alignment explanation
Indices: 51857218--51857402 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
51857208 TCGAATGATG
* *
51857218 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
51857257 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
51857298 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
51857337 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
51857376 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51857403 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:51857354 original size:79 final size:81
Alignment explanation
Indices: 51857218--51857400 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
51857208 TCGAATGATG
* *
51857218 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
51857282 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
51857297 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
51857359 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
51857377 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
51857401 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:51857424 original size:79 final size:78
Alignment explanation
Indices: 51857219--51857435 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
51857209 CGAATGATGT
* *
51857219 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
51857282 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
51857299 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
51857362 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
51857378 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
51857436 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:51865348 original size:79 final size:81
Alignment explanation
Indices: 51865212--51865394 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
51865202 TCGAATGATG
* * *
51865212 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGTCAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
51865276 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
51865291 TTCCGGGCTAAG-CCCGAAGGCATTGGTG-CGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGTCAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
51865353 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
51865371 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
51865395 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.67
80 29 0.32
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGTCAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:51865410 original size:40 final size:40
Alignment explanation
Indices: 51865213--51865396 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
51865203 CGAATGATGT
** * *
51865213 CCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-CGAGTTACTATAA
* *
51865253 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
51865293 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51865331 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51865372 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51865397 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 82 0.65
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:51865418 original size:79 final size:77
Alignment explanation
Indices: 51865246--51865429 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 77
51865236 GTGTTAAGTG
* *
51865246 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
**
51865311 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* *
51865325 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAA
*
51865389 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
51865404 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
51865430 TACGTGATTC
Statistics
Matches: 90, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
78 3 0.03
79 58 0.64
80 29 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:51866756 original size:74 final size:74
Alignment explanation
Indices: 51866635--51866781 Score: 276
Period size: 74 Copynumber: 2.0 Consensus size: 74
51866625 GTTTTGGAAC
51866635 TCAAGATATGATTTTTAAAGTGAAAGTGACGCAGTTAGCCAACTGCCTGGAAATTTTTAAAATGG
1 TCAAGATATGATTTTTAAAGTGAAAGTGACGCAGTTAGCCAACTGCCTGGAAATTTTTAAAATGG
51866700 ACTGTGAAG
66 ACTGTGAAG
* *
51866709 TCAAGTTATGATTTTTAAGGTGAAAGTGACGCAGTTAGCCAACTGCCTGGAAATTTTTAAAATGG
1 TCAAGATATGATTTTTAAAGTGAAAGTGACGCAGTTAGCCAACTGCCTGGAAATTTTTAAAATGG
51866774 ACTGTGAA
66 ACTGTGAA
51866782 AGTAAGTGAT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.31
Consensus pattern (74 bp):
TCAAGATATGATTTTTAAAGTGAAAGTGACGCAGTTAGCCAACTGCCTGGAAATTTTTAAAATGG
ACTGTGAAG
Found at i:51867437 original size:28 final size:28
Alignment explanation
Indices: 51867364--51867441 Score: 72
Period size: 29 Copynumber: 2.8 Consensus size: 28
51867354 CTGTAAAAGT
* **
51867364 GATTGGGCCTAGTGGGCCATATAGATGT
1 GATTGGGCCTTGTGGGCCATATAGATAA
51867392 GATTTGGG-CTTAAG-GGGCCATAT-GAATAA
1 GA-TTGGGCCTT--GTGGGCCATATAG-ATAA
51867421 GATTGGGCCTTGTGGGCCATA
1 GATTGGGCCTTGTGGGCCATA
51867442 AGCATGTATG
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
27 1 0.02
28 18 0.44
29 21 0.51
30 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.35, T:0.28
Consensus pattern (28 bp):
GATTGGGCCTTGTGGGCCATATAGATAA
Found at i:51881744 original size:17 final size:17
Alignment explanation
Indices: 51881719--51881753 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
51881709 TTAGGATAAA
*
51881719 TTTTGATTGATTTATCT
1 TTTTGATTGATATATCT
*
51881736 TTTTTATTGATATATCT
1 TTTTGATTGATATATCT
51881753 T
1 T
51881754 GAATTAAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.20, C:0.06, G:0.09, T:0.66
Consensus pattern (17 bp):
TTTTGATTGATATATCT
Found at i:51884339 original size:42 final size:43
Alignment explanation
Indices: 51884233--51884341 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 43
51884223 ATCTCGATCA
* * * **
51884233 CATATCCCAGATATGGTCTTAAATGGGATCTCATATTTATGCT
1 CATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGCT
* * *
51884276 AATAGCCCAGCTATGGTCTTACACGA-AGTCTCATATCGATGC-
1 CATATCCCAGATATGGTCTTACACGAGA-TCTCATATCGATGCT
51884318 CATATCCCAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
51884342 ATAATTTCAA
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
42 22 0.41
43 32 0.59
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (43 bp):
CATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGCT
Found at i:51887173 original size:27 final size:27
Alignment explanation
Indices: 51887150--51887481 Score: 333
Period size: 27 Copynumber: 12.3 Consensus size: 27
51887140 TTAGTTTACC
*
51887150 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
51887177 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
*
51887204 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTATA
*
51887231 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
51887258 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
*
51887285 AAATTACCAAAATACCACTT-GTTTGTA
1 AAATTACCAAAATACC-CTTGGTTTATA
* * *
51887312 AAATTACCAAAACACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
51887339 AAATTATCAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * * *
51887366 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTATA
** ** **
51887393 AAATTACTGAAATACCCTCAGTTTGCA
1 AAATTACCAAAATACCCTTGGTTTATA
*** * ** *
51887420 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
51887447 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
*
51887474 GAATTACC
1 AAATTACC
51887482 GTTTTACCCT
Statistics
Matches: 256, Mismatches: 47, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
26 2 0.01
27 251 0.98
28 3 0.01
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTATA
Found at i:51887577 original size:27 final size:27
Alignment explanation
Indices: 51887502--51887668 Score: 212
Period size: 27 Copynumber: 6.3 Consensus size: 27
51887492 CGATTTACAA
*
51887502 AATTACCG-AATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51887528 AATTATCGCAA-ACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51887554 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51887581 AAATACCGAAATACCCCTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51887608 AATTACTGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
51887635 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
51887662 AATTACC
1 AATTACC
51887669 ATTTTCTTTT
Statistics
Matches: 123, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 31 0.25
27 92 0.75
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:51887937 original size:2 final size:2
Alignment explanation
Indices: 51887930--51887975 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
51887920 GCCTCGCCAC
51887930 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51887972 AT AT
1 AT AT
51887976 CTGTTCTGGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51888262 original size:31 final size:31
Alignment explanation
Indices: 51888227--51888306 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 31
51888217 TTGCATTCAC
* *
51888227 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* **
51888258 ATTCTGATTCTAATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
51888289 ATTTTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
51888307 ATTCTGATTC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:51888266 original size:6 final size:6
Alignment explanation
Indices: 51888227--51888363 Score: 93
Period size: 6 Copynumber: 22.3 Consensus size: 6
51888217 TTGCATTCAC
* * * *
51888227 ATTCTG ATTTTG ATTCTG -TTACCTA ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
51888276 -TCACCTA ATTTTG ATTTTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
51888326 ATTCTG ATTTTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
51888364 AATGTTTCTT
Statistics
Matches: 102, Mismatches: 18, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
5 5 0.05
6 86 0.84
7 8 0.08
8 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:51888302 original size:43 final size:43
Alignment explanation
Indices: 51888255--51888361 Score: 178
Period size: 43 Copynumber: 2.5 Consensus size: 43
51888245 TTACCTAATA
*
51888255 CTGATTCTGATTCTAATTCTGTCACCTAATTTTGATTTTGATT
1 CTGATTCTGATTCTAATTCTGTCACCTAATTCTGATTTTGATT
* *
51888298 CTGATTCTGATTCTGATTCTGTCACCTGATTCTGATTTTGATT
1 CTGATTCTGATTCTAATTCTGTCACCTAATTCTGATTTTGATT
*
51888341 CTGATTCTGATTCTAGTTCTG
1 CTGATTCTGATTCTAATTCTG
51888362 ATAATGTTTC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.50
Consensus pattern (43 bp):
CTGATTCTGATTCTAATTCTGTCACCTAATTCTGATTTTGATT
Found at i:51898592 original size:38 final size:38
Alignment explanation
Indices: 51898536--51898737 Score: 228
Period size: 38 Copynumber: 5.3 Consensus size: 38
51898526 GGCATGAAGG
* * * *
51898536 CCCGAATATAATACCAGCACTAGGCCTACGGGATTTAT
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
*
51898574 CCCGGATATAATACCAGCA-TGAAGCCTGCTGGATTTAA
1 CCCGGATATAATACCAGCACT-AAGCCTGCGGGATTTAA
* ** *
51898612 CCCAGATATTTTACCAGCA-TGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACT-AAGCCTGCGGG-ATTTAA
*
51898651 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
* * * *
51898690 CCCGGATATAATACTAGCACAAAGCCTACAGGATTTAA
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
51898728 CCCGGATATA
1 CCCGGATATA
51898738 CATCGAATAT
Statistics
Matches: 141, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.01
38 103 0.73
39 10 0.07
40 27 0.19
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
Found at i:51898715 original size:78 final size:76
Alignment explanation
Indices: 51898541--51898737 Score: 241
Period size: 78 Copynumber: 2.6 Consensus size: 76
51898531 GAAGGCCCGA
* * * * * *
51898541 ATATAATACCAGCACTAGGCCTACGGGATTTATCCCGGATATAATACCAGCATGAAGCCTGCTGG
1 ATATAATACCAGCACAAAGCCTACAGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
51898606 ATTTAACCCAG
66 ATTTAACCCAG
** ** * * *
51898617 ATATTTTACCAGCATGAAGCCTGCGGGTCTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCG
1 ATATAATACCAGCACAAAGCCTACAGG-ATTTAA-CCCGGATATAATACCAGCACGAAGCCTGCG
*
51898682 GGATTTAACCCGG
64 GGATTTAACCCAG
*
51898695 ATATAATACTAGCACAAAGCCTACAGGATTTAACCCGGATATA
1 ATATAATACCAGCACAAAGCCTACAGGATTTAACCCGGATATA
51898738 CATCGAATAT
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
76 31 0.31
77 9 0.09
78 60 0.60
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.23
Consensus pattern (76 bp):
ATATAATACCAGCACAAAGCCTACAGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
ATTTAACCCAG
Found at i:51902543 original size:42 final size:43
Alignment explanation
Indices: 51902462--51902587 Score: 123
Period size: 42 Copynumber: 2.9 Consensus size: 43
51902452 CCCCAGACGT
* *
51902462 GGTCTTACATGTAATCAAATATCGATGTCACTGTCCCAGAAAA
1 GGTCTTACATGAAATCAAATATCGATGCCACTGTCCCAGAAAA
* * * * *
51902505 GGTCTTCCATGAAATCATATA-CGATGCCAGTGTCCCAGACAT
1 GGTCTTACATGAAATCAAATATCGATGCCACTGTCCCAGAAAA
* *
51902547 GGTCTTACACGTAAATCACAA-ATTGATGCCGAC-GTCCCAGA
1 GGTCTTACATG-AAATCA-AATATCGATGCC-ACTGTCCCAGA
51902588 CGTGGTTTTA
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
42 26 0.39
43 25 0.37
44 15 0.22
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGCCACTGTCCCAGAAAA
Done.