Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 187 of 378
Found at i:54818799 original size:40 final size:40
Alignment explanation
Indices: 54818741--54818965 Score: 238
Period size: 40 Copynumber: 5.6 Consensus size: 40
54818731 AAACCAAGTA
* *
54818741 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * * *
54818780 CCTTTGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * * *
54818820 CCTTCGGGTCTTAGCCCGGAAATAGTC-ACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
* * *
54818860 CCTTCGGGACTTAGCTCGGGTATAGCAACTACTCGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATG
* * *
54818903 CCTTCAGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* *
54818943 CCTTTGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
54818966 CATCCGAATA
Statistics
Matches: 150, Mismatches: 30, Indels: 11
0.79 0.16 0.06
Matches are distributed among these distances:
39 12 0.08
40 105 0.70
42 1 0.01
43 32 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:54821211 original size:40 final size:40
Alignment explanation
Indices: 54821103--54821230 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 40
54821093 TCTTCGGAAT
* * *
54821103 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * * ** * *
54821142 TTAACCCGAATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
54821182 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
54821222 TTAGCCCGG
1 TTAGCCCGG
54821231 GTATCATTCA
Statistics
Matches: 69, Mismatches: 19, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
39 3 0.04
40 66 0.96
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:54829221 original size:80 final size:80
Alignment explanation
Indices: 54829064--54829240 Score: 196
Period size: 80 Copynumber: 2.2 Consensus size: 80
54829054 AACCGAATCT
* * * * **
54829064 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGAATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGAATATAAT
*
54829128 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* ** * *
54829143 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGAATATAA
* *
54829207 TCACTAGCATAAATGC
65 TAACTAGCACAAATGC
*
54829223 CTTCTGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
54829241 GTATCATTCA
Statistics
Matches: 80, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 10 0.12
80 68 0.85
81 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGAATATAAT
AACTAGCACAAATGC
Found at i:54829240 original size:40 final size:40
Alignment explanation
Indices: 54829073--54829240 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
54829063 TCTTCGGAAT
* * *
54829073 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * * *** *
54829112 TTAACCCGAATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
54829152 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
54829192 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCTGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
54829232 TTAGCCCGG
1 TTAGCCCGG
54829241 GTATCATTCA
Statistics
Matches: 104, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 3 0.03
40 100 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:54835710 original size:19 final size:20
Alignment explanation
Indices: 54835679--54835732 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
54835669 GGTCTTTTTG
* *
54835679 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCAAATGCA
*
54835698 TGCAATGTAATGCAAATGCA
1 TGAAATGTAATGCAAATGCA
54835718 TGAAATG-AATGCAAA
1 TGAAATGTAATGCAAA
54835733 AAGAGGCATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 23 0.77
20 7 0.23
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.28
Consensus pattern (20 bp):
TGAAATGTAATGCAAATGCA
Found at i:54839107 original size:2 final size:2
Alignment explanation
Indices: 54839102--54839127 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
54839092 CATAAACATC
54839102 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
54839128 TTTATACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:54839229 original size:3 final size:3
Alignment explanation
Indices: 54839223--54839289 Score: 125
Period size: 3 Copynumber: 22.3 Consensus size: 3
54839213 AAAAAAAAAG
*
54839223 TAA TAA TAA TAA TAA TAA TAC TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
54839271 TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA T
54839290 GGGGTGACAA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:54843530 original size:22 final size:23
Alignment explanation
Indices: 54843505--54843551 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
54843495 AGATTTAAAT
* *
54843505 AAATATTTATA-TTTATTTTATA
1 AAATATTCATATTTTATGTTATA
54843527 AAATATTCATATTTTATGTTATA
1 AAATATTCATATTTTATGTTATA
54843550 AA
1 AA
54843552 GCACTGACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
AAATATTCATATTTTATGTTATA
Found at i:54843633 original size:18 final size:18
Alignment explanation
Indices: 54843597--54843632 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
54843587 CTTTTATTGT
*
54843597 TAAAATTTATTATTAAAA
1 TAAAATTTAATATTAAAA
54843615 TAAAATTATAATATTAAA
1 TAAAATT-TAATATTAAA
54843633 TTTTTAGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:54850085 original size:39 final size:39
Alignment explanation
Indices: 54850022--54850322 Score: 386
Period size: 39 Copynumber: 7.7 Consensus size: 39
54850012 CACCAACACA
* * * * * * *
54850022 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACG
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
* * *
54850062 AAGCCTGCGGACCTTAAGTCCGGATATAGTACCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * *
54850101 AAGCTTGCGAATCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * * *
54850140 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
** *
54850180 AAGCCTGTAGACCTTAAGTCCGGATACAATTCCAACACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* *
54850219 AAGCCTGCAGACCTTAAGTCCAGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
54850258 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
54850297 AAGCCTGCGGACCTTAAGTCCGGATA
1 AAGCCTGCGGACCTTAAGTCCGGATA
54850323 TACATCAAAT
Statistics
Matches: 231, Mismatches: 29, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
39 192 0.83
40 39 0.17
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.20
Consensus pattern (39 bp):
AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:54850235 original size:118 final size:118
Alignment explanation
Indices: 54850022--54850322 Score: 426
Period size: 118 Copynumber: 2.6 Consensus size: 118
54850012 CACCAACACA
* * * *
54850022 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGCGGACCTTAAGTCCGGAT
1 AAGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* * * * * *
54850087 ATAGTACCAGCACGAAGCTTGCGAATCTTAAGTCCGGATACAATTCCAGCACG
66 ACAATACCAACACGAAGCCTGCGAACCTTAAGTCCAGATACAATTCCAGCACG
* **
54850140 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGTAGACCTTAAGTCCGGAT
1 AAGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
*
54850205 ACAATTCCAACACGAAGCCTGC-AGACCTTAAGTCCAGATACAATTCCAGCACG
66 ACAATACCAACACGAAGCCTGCGA-ACCTTAAGTCCAGATACAATTCCAGCACG
* * *
54850258 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
1 AAGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
54850322 A
66 A
54850323 TACATCAAAT
Statistics
Matches: 162, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
117 52 0.32
118 110 0.68
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.20
Consensus pattern (118 bp):
AAGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
ACAATACCAACACGAAGCCTGCGAACCTTAAGTCCAGATACAATTCCAGCACG
Found at i:54853290 original size:14 final size:14
Alignment explanation
Indices: 54853271--54853305 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
54853261 GCATCACATA
*
54853271 TATATATGTATATG
1 TATATATATATATG
54853285 TATATATATATATG
1 TATATATATATATG
54853299 TATATAT
1 TATATAT
54853306 TTGATTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (14 bp):
TATATATATATATG
Found at i:54856197 original size:39 final size:39
Alignment explanation
Indices: 54856125--54856397 Score: 312
Period size: 39 Copynumber: 6.9 Consensus size: 39
54856115 GAATTCAATC
* * * * * *
54856125 ACCAACACAAAGCCTACGGGACTTTAAGCCCGGATATAGT
1 ACCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATATAAT
** * *
54856165 ACCAGTGCGAAGCCTGTGGACCTTAAGTCCGGATATAGT
1 ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAAT
* * *
54856204 ACCAGCACGAAGCCTCCGGATCTTAAGTCCGGATACAAT
1 ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAAT
* * * *
54856243 TCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAAT
1 ACCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATATAAT
* *
54856283 ACCAGCATGAAGCCTGCGGACCTTAAGTCCGGATACAAT
1 ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAAT
* *
54856322 TCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAAT
1 ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAAT
* * *
54856361 TCCAGCATGAAGCCTGCGGACCTTAAGTCCGCATATA
1 ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATA
54856398 CATCAAATAT
Statistics
Matches: 199, Mismatches: 33, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
39 156 0.78
40 43 0.22
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (39 bp):
ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAAT
Found at i:54856286 original size:79 final size:78
Alignment explanation
Indices: 54856172--54856391 Score: 341
Period size: 79 Copynumber: 2.8 Consensus size: 78
54856162 AGTACCAGTG
* * * * *
54856172 CGAAGCCTGTGGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTCCGGATCTTAAGTCCGGA
1 CGAAGCCTGCGGACCTTAAGTCCGGATATAATACCAGCATGAAGCCTGCGGACCTTAAGTCCGGA
54856237 TACAATTCCAGCA
66 TACAATTCCAGCA
* * *
54856250 CGAAGCCTGCGGGTCTTTAAGCCCGGATATAATACCAGCATGAAGCCTGCGGACCTTAAGTCCGG
1 CGAAGCCTGC-GGACCTTAAGTCCGGATATAATACCAGCATGAAGCCTGCGGACCTTAAGTCCGG
54856315 ATACAATTCCAGCA
65 ATACAATTCCAGCA
* *
54856329 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCATGAAGCCTGCGGACCTTAAGTCCG
1 CGAAGCCTGCGGACCTTAAGTCCGGATATAATACCAGCATGAAGCCTGCGGACCTTAAGTCCG
54856392 CATATACATC
Statistics
Matches: 128, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
78 57 0.45
79 71 0.55
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (78 bp):
CGAAGCCTGCGGACCTTAAGTCCGGATATAATACCAGCATGAAGCCTGCGGACCTTAAGTCCGGA
TACAATTCCAGCA
Found at i:54856347 original size:118 final size:118
Alignment explanation
Indices: 54856134--54856397 Score: 377
Period size: 118 Copynumber: 2.2 Consensus size: 118
54856124 CACCAACACA
* * ** *
54856134 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTGCGAAGCCTGTGGACCTTAAGTCCGGAT
1 AAGCCTGCGGGACTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* * *
54856199 ATAGTACCAGCACGAAGCCTCCGGATCTTAAGTCCGGATACAATTCCAGCACG
66 ACAATACCAGCACGAAGCCTCCGGACCTTAAGTCCGGATACAATTCCAGCACG
* *
54856252 AAGCCTGCGGGTCTTTAAGCCCGGATATAATACCAGCATGAAGCCTGCGGACCTTAAGTCCGGAT
1 AAGCCTGCGGGACTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* * *
54856317 ACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCATG
66 ACAATACCAGCACGAAGCCTCCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * *
54856370 AAGCCTGC-GGACCTTAAGTCCGCATATA
1 AAGCCTGCGGGACTTTAAGCCCGGATATA
54856398 CATCAAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
117 16 0.12
118 113 0.88
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (118 bp):
AAGCCTGCGGGACTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
ACAATACCAGCACGAAGCCTCCGGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:54866274 original size:18 final size:18
Alignment explanation
Indices: 54866243--54866283 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
54866233 CTTAATCATG
*
54866243 CGAGCTTATAATTCTATA
1 CGAGCCTATAATTCTATA
* *
54866261 CGAGCCTATTATTCTATG
1 CGAGCCTATAATTCTATA
54866279 CGAGC
1 CGAGC
54866284 TTTAATGCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (18 bp):
CGAGCCTATAATTCTATA
Found at i:54866331 original size:17 final size:17
Alignment explanation
Indices: 54866309--54866350 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
54866299 CCCTGTGATA
*
54866309 TGCAAACAC-TTACATTG
1 TGCAAAC-CTTTACAATG
54866326 TGCAAACCTTTACAATG
1 TGCAAACCTTTACAATG
*
54866343 TGCGAACC
1 TGCAAACC
54866351 CCATATGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 1 0.05
17 21 0.95
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (17 bp):
TGCAAACCTTTACAATG
Found at i:54868199 original size:47 final size:47
Alignment explanation
Indices: 54868133--54868630 Score: 704
Period size: 47 Copynumber: 10.4 Consensus size: 47
54868123 TATCACAGTT
* *
54868133 ATACACTTCCAC-TTCCATCACATTGGCCATTCGGCCTTATCATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCATATAC
*
54868180 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATAC
54868229 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATAC
*
54868278 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC
*
54868325 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC--ACAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC
*
54868370 ATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACAC-T-TTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATAC
*
54868421 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC--ACAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC
*
54868466 ATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACAC-T-TTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATAC
* *
54868517 ATACACTTTCACATTCATCACATTGGCCATTCGACCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC
*
54868564 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC--ACAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC
*
54868609 ATACGCATGTTCACATTCATCA
1 ATACAC-T-TTCACATTCATCA
54868631 ATTTTCATGT
Statistics
Matches: 416, Mismatches: 18, Indels: 34
0.89 0.04 0.07
Matches are distributed among these distances:
45 24 0.06
46 3 0.01
47 208 0.50
48 2 0.00
49 161 0.39
50 2 0.00
51 16 0.04
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC
Found at i:54868248 original size:27 final size:27
Alignment explanation
Indices: 54868218--54868300 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
54868208 ATTCGGCCTT
54868218 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
* * *
54868245 ATCACAT-TGGC---CA--TTCGGCCTT-
1 ATCACATAT-ACATACACTTTC-ACATTC
54868267 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
54868294 ATCACAT
1 ATCACAT
54868301 TGGCCATTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
22 11 0.27
23 4 0.10
24 2 0.05
25 2 0.05
26 4 0.10
27 18 0.44
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.33
Consensus pattern (27 bp):
ATCACATATACATACACTTTCACATTC
Found at i:54868325 original size:96 final size:97
Alignment explanation
Indices: 54868133--54868612 Score: 741
Period size: 96 Copynumber: 5.0 Consensus size: 97
54868123 TATCACAGTT
* * * *
54868133 ATACACTTCCAC-TTCCATCACATTGGCCATTCGGCCTTAT--CATATATATATACTTTCACATT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACACATACATACACTTTCACATT
54868195 CATCACATTGGCCATTCGGCCTTATCACATATAC
65 CATCACATTGGCCATTCGGCCTTATCACA-ATAC
*
54868229 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACATACACTTTCACATTC
54868294 ATCACATTGGCCATTCGGCCTTATCAC-ATAC
66 ATCACATTGGCCATTCGGCCTTATCACAATAC
*
54868325 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC--GCA-TGTTCACATT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACATACACT-TTCACATT
54868387 CATCACATTGGCCATTCGGCCTTATCACATATAC
65 CATCACATTGGCCATTCGGCCTTATCACA-ATAC
*
54868421 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC--GCA-TGTTCACATT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACATACACT-TTCACATT
54868483 CATCACATTGGCCATTCGGCCTTATCACATATAC
65 CATCACATTGGCCATTCGGCCTTATCACA-ATAC
*
54868517 ATACACTTTCACATTCATCACATTGGCCATTCGACCTTAT--CACATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACATACACTTTCACATTC
54868580 ATCACATTGGCCATTCGGCCTTATCACACATAC
66 ATCACATTGGCCATTCGGCCTTATCACA-ATAC
54868613 GCATGTTCAC
Statistics
Matches: 367, Mismatches: 8, Indels: 18
0.93 0.02 0.05
Matches are distributed among these distances:
93 1 0.00
94 45 0.12
96 270 0.74
97 3 0.01
98 48 0.13
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (97 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACATACACTTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACAATAC
Found at i:54869617 original size:16 final size:16
Alignment explanation
Indices: 54869596--54869628 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
54869586 AACGTATATA
54869596 CATAATTCATATTCAT
1 CATAATTCATATTCAT
54869612 CATAATTCATATTCAT
1 CATAATTCATATTCAT
54869628 C
1 C
54869629 CCGTTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.42
Consensus pattern (16 bp):
CATAATTCATATTCAT
Found at i:54872380 original size:40 final size:40
Alignment explanation
Indices: 54872331--54872422 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 40
54872321 GACTAAGTTC
54872331 GGCAC-AAGTGTGCG-GTTCGAAATAGCTTCAGCTACA-AA
1 GGCACTAAGTGTGCGAGTT-GAAATAGCTTCAGCTACATAA
* * * *
54872369 TGGCACTAAGTGTGCGAGTTGGAATAGCTTCGGCTATATGA
1 -GGCACTAAGTGTGCGAGTTGAAATAGCTTCAGCTACATAA
54872410 GGCACTAAGTGTG
1 GGCACTAAGTGTG
54872423 TGATACTGAG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
39 5 0.11
40 37 0.80
41 4 0.09
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.25
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAGTTGAAATAGCTTCAGCTACATAA
Found at i:54876840 original size:40 final size:40
Alignment explanation
Indices: 54876785--54876952 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
54876775 TGAATGATAC
* *
54876785 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
54876825 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
54876865 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
54876905 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
54876945 CC-GGCTAA
1 CCGGGCTAA
54876953 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:54884954 original size:40 final size:40
Alignment explanation
Indices: 54884899--54885063 Score: 190
Period size: 40 Copynumber: 4.2 Consensus size: 40
54884889 AATGATACCC
* *
54884899 GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
* *
54884939 GGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATATCCG
* * ** *
54884979 GGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
* * * *
54885019 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
54885058 GGCTAA
1 GGCTAA
54885064 ATTCCGAAGA
Statistics
Matches: 103, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 6 0.06
40 95 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
Found at i:54885032 original size:80 final size:79
Alignment explanation
Indices: 54884897--54885063 Score: 210
Period size: 80 Copynumber: 2.1 Consensus size: 79
54884887 TGAATGATAC
* * ** *
54884897 CCGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTCG
1 CCGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATT-G
*
54884961 TGCGAGTTGTTATAT
65 TGCGAGTGGTTATAT
* * *
54884976 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CC-GGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
**
54885041 TGCTTGTGGTTATAT
65 TGCGAGTGGTTATAT
54885056 CCGGCTAA
1 CCGGCTAA
54885064 ATTCCGAAGA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
79 8 0.11
80 64 0.85
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTGT
GCGAGTGGTTATAT
Found at i:54889290 original size:47 final size:47
Alignment explanation
Indices: 54889239--54889766 Score: 795
Period size: 47 Copynumber: 11.1 Consensus size: 47
54889229 TTAGGATTTT
*
54889239 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
54889286 ATGTGATGGATGTGAACATGGGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
54889333 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
*
54889384 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
54889431 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
54889478 ATGTGATGGATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
54889525 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
54889576 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
54889623 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
54889670 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
54889717 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
54889764 ATG
1 ATG
54889767 CGAAACGTGT
Statistics
Matches: 444, Mismatches: 29, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
47 357 0.80
49 4 0.01
51 83 0.19
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:54889391 original size:145 final size:142
Alignment explanation
Indices: 54889239--54889766 Score: 776
Period size: 145 Copynumber: 3.7 Consensus size: 142
54889229 TTAGGATTTT
* * *
54889239 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* **
54889304 TGGGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGAT
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-CCG-AT-CGTATGTGTGAT
54889369 AAGGCCGAATGGCCA
128 AAGGCCGAATGGCCA
* *
54889384 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
54889449 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACACG--CGTATGTGTGATAA
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC-CGATCGTATGTGTGATAA
54889512 GGCCGAATGGCCA
130 GGCCGAATGGCCA
** *
54889525 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATAGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
54889590 AACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C-ATGCGTATGTGTG
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCGAT-CGTATGTGTG
54889653 ATAAGGCCGAATGGCCA
126 ATAAGGCCGAATGGCCA
* *
54889670 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
** * * *
54889735 TGAATATATGTGGTAAGGCCGAATGGCTAATG
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATG
54889767 CGAAACGTGT
Statistics
Matches: 354, Mismatches: 21, Indels: 20
0.90 0.05 0.05
Matches are distributed among these distances:
141 110 0.31
143 3 0.01
144 1 0.00
145 240 0.68
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (142 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCGATCGTATGTGTGATAAG
GCCGAATGGCCA
Found at i:54889554 original size:192 final size:192
Alignment explanation
Indices: 54889239--54889766 Score: 920
Period size: 192 Copynumber: 2.8 Consensus size: 192
54889229 TTAGGATTTT
*
54889239 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
*
54889304 TGGGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGAT
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGAT
*
54889369 AAGGCCGAATGGCCAATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
131 AAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
54889431 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
*
54889496 CGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGAT
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGAT
*
54889561 AAGGCCGAATAGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
131 AAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
54889623 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
* * * **
54889688 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG-A-ATATATGTG-G-T
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGAT
*
54889749 AAGGCCGAATGGCTAATG
131 AAGGCCGAATGGCCAATG
54889767 CGAAACGTGT
Statistics
Matches: 322, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
188 17 0.05
189 1 0.00
190 9 0.03
191 1 0.00
192 294 0.91
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (192 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGAT
AAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:54889980 original size:37 final size:37
Alignment explanation
Indices: 54889930--54890010 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
54889920 GGAAATATAT
*
54889930 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
54889967 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
54890004 TCCGGGT
1 TCCGGGT
54890011 TGTAACACCC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:54891469 original size:40 final size:40
Alignment explanation
Indices: 54891361--54891570 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
54891351 CGGGATTTAA
* * * * *
54891361 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
54891401 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
54891441 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
54891481 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
54891521 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
54891561 CCGGATATAT
1 CCGGATATAT
54891571 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:54899474 original size:40 final size:40
Alignment explanation
Indices: 54899366--54899575 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
54899356 CGGGATTTAA
* * * * *
54899366 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
54899406 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
54899446 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
54899486 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
54899526 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
54899566 CCGGATATAT
1 CCGGATATAT
54899576 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:54908987 original size:67 final size:64
Alignment explanation
Indices: 54908849--54909032 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
54908839 CATAATTTTG
* * * * * *
54908849 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACA-TATATCCCGT
54908911 A
64 A
* * *
54908912 GCTCTCTTGTCTACATGGTGTCCTTCATATGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTGTAC-ACATA--GAACCACCCATGCGACCTAGCTACATATATCCCG
54908977 TA
63 TA
* *
54908979 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACAT
54909033 CATAATGTCT
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 26 0.26
66 22 0.22
67 31 0.31
68 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:54909574 original size:30 final size:30
Alignment explanation
Indices: 54909540--54909600 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
54909530 TCCTTAACTC
54909540 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
54909570 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
54909600 A
1 A
54909601 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:54932488 original size:40 final size:40
Alignment explanation
Indices: 54932442--54932627 Score: 372
Period size: 40 Copynumber: 4.7 Consensus size: 40
54932432 GTGATTGCAG
54932442 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
54932482 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
54932522 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
54932562 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
54932602 GCCTTCGGGTCTTAGCCCGGATATAT
1 GCCTTCGGGTCTTAGCCCGGATATAT
54932628 TTCCAATGTT
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
Found at i:54940700 original size:40 final size:40
Alignment explanation
Indices: 54940552--54940764 Score: 284
Period size: 40 Copynumber: 5.2 Consensus size: 40
54940542 CGGGATTTAA
* * * * *
54940552 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
54940592 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
54940632 CCGGATATATGCACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAT---CAACTCGCACGAATGCCTTCGGGTCTTAGC
54940675 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
54940715 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
54940755 CCGGATATAT
1 CCGGATATAT
54940765 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 1 0.01
40 117 0.76
43 35 0.23
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:54940703 original size:83 final size:79
Alignment explanation
Indices: 54940552--54940764 Score: 282
Period size: 83 Copynumber: 2.6 Consensus size: 79
54940542 CGGGATTTAA
* * * * * * * * *
54940552 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGTGACTTGCACAAAGG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT-ATAACTCGCACAAAGG
54940617 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
*
54940632 CCGGATATATGCACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGA
1 CCGGATATAT---CAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT-AACTCGCACAA
*
54940697 ATGCCTTCGGGTCTTAGC
62 AGGCCTTCGGGTCTTAGC
54940715 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
54940765 TTCCAATGTT
Statistics
Matches: 118, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
80 49 0.42
82 1 0.01
83 68 0.58
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (79 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATAACTCGCACAAAGGC
CTTCGGGTCTTAGC
Found at i:54948343 original size:40 final size:40
Alignment explanation
Indices: 54948323--54948548 Score: 452
Period size: 40 Copynumber: 5.7 Consensus size: 40
54948313 TTGCACAAAG
54948323 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
54948363 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
54948403 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
54948443 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
54948483 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
54948523 GCCTTCGGGTCTTAGCCCGGATATAT
1 GCCTTCGGGTCTTAGCCCGGATATAT
54948549 TTCCAATGTT
Statistics
Matches: 186, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 186 1.00
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
Found at i:54952743 original size:16 final size:16
Alignment explanation
Indices: 54952685--54952743 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 16
54952675 ATGAATCGGC
*
54952685 AAAAGCCGAAATGCTG
1 AAAAGCCAAAATGCTG
* * * *
54952701 AAATGCCGAAATTCTA
1 AAAAGCCAAAATGCTG
**
54952717 AAAAGGTAAAATGCTG
1 AAAAGCCAAAATGCTG
54952733 AAAAGCCAAAA
1 AAAAGCCAAAA
54952744 GTTTGGCTAC
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.51, C:0.15, G:0.19, T:0.15
Consensus pattern (16 bp):
AAAAGCCAAAATGCTG
Found at i:54957876 original size:29 final size:29
Alignment explanation
Indices: 54957834--54957917 Score: 141
Period size: 29 Copynumber: 2.9 Consensus size: 29
54957824 GCCGTATTTT
**
54957834 TTTCCAGCTTGCACACTTAGTGCCAAATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
*
54957863 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
54957892 TTTCCAGCACGCACACTTAGTGCCAA
1 TTTCCAGCACGCACACTTAGTGCCAA
54957918 TCTCGACACC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCAAATA
Found at i:54960998 original size:28 final size:28
Alignment explanation
Indices: 54960967--54961029 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
54960957 TGACCGAGTT
* * *
54960967 ACCAGAAACAAATAATTGTGGTAGGGCC
1 ACCAGAAACAAATAATTGTGGCAGAGCA
* *
54960995 ACCAGAAACAGATATTTGTGGCAGAGCA
1 ACCAGAAACAAATAATTGTGGCAGAGCA
54961023 ACCAGAA
1 ACCAGAA
54961030 CGCTTCCTCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.41, C:0.19, G:0.24, T:0.16
Consensus pattern (28 bp):
ACCAGAAACAAATAATTGTGGCAGAGCA
Found at i:54962280 original size:26 final size:25
Alignment explanation
Indices: 54962251--54962312 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
54962241 GATTCAGTTG
*
54962251 TAGAGGAAAAGAAGAAGAAGAGAAAA
1 TAGA-GAAAAGAAGAAGAAAAGAAAA
* *
54962277 TAGATGAAAAG-AGGAGAAAAGAAGA
1 TAGA-GAAAAGAAGAAGAAAAGAAAA
54962302 -AGAGAAAAGAA
1 TAGAGAAAAGAA
54962313 TTGTCAGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
23 6 0.19
24 4 0.13
25 11 0.35
26 10 0.32
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.05
Consensus pattern (25 bp):
TAGAGAAAAGAAGAAGAAAAGAAAA
Found at i:54963130 original size:15 final size:14
Alignment explanation
Indices: 54963112--54963148 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
54963102 TCCAAGATTG
54963112 AGAAACCGAGAATAA
1 AGAAACC-AGAATAA
54963127 AGAAATCCAGAATAA
1 AGAAA-CCAGAATAA
54963142 AGAAACC
1 AGAAACC
54963149 CAAGATACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 2 0.10
15 17 0.81
16 2 0.10
ACGTcount: A:0.59, C:0.16, G:0.16, T:0.08
Consensus pattern (14 bp):
AGAAACCAGAATAA
Found at i:54963146 original size:30 final size:30
Alignment explanation
Indices: 54963091--54963148 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
54963081 CAAGAAAATC
**
54963091 GAATAAAGAAATCCAAGATTGAGAAACCGA
1 GAATAAAGAAATCCAAGATAAAGAAACCGA
54963121 GAATAAAGAAATCC-AGAATAAAGAAACC
1 GAATAAAGAAATCCAAG-ATAAAGAAACC
54963149 CAAGATACGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCGA
Found at i:54967644 original size:29 final size:29
Alignment explanation
Indices: 54967607--54967673 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
54967597 TGAATGTGAC
*
54967607 TGGGCCTAACGGGCCATATAAATGTAATT
1 TGGGCCTAACGGGCCATATAAAGGTAATT
* * *
54967636 TGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAACGGGCCATATAAAGGTAATT
54967665 TGGGCCTAA
1 TGGGCCTAA
54967674 AGGGGCTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGGCCTAACGGGCCATATAAAGGTAATT
Found at i:54974586 original size:40 final size:40
Alignment explanation
Indices: 54974520--54974686 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
54974510 AAATTGAATG
* * *
54974520 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
54974559 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
54974599 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
54974639 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
54974679 ATATCCGG
1 ATATCCGG
54974687 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:54982588 original size:40 final size:40
Alignment explanation
Indices: 54982522--54982688 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
54982512 AAATTGAATG
* * *
54982522 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
54982561 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
54982601 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
54982641 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
54982681 ATATCCGG
1 ATATCCGG
54982689 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:54993540 original size:19 final size:19
Alignment explanation
Indices: 54993502--54993540 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
54993492 ATTCATAGCA
*
54993502 AAAATTTTCTAAGTTTTTT
1 AAAATTTTCTAAGTTGTTT
54993521 AAAATTTTCCTAAG-TGTTT
1 AAAATTTT-CTAAGTTGTTT
54993540 A
1 A
54993541 GTTTAGTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.51
Consensus pattern (19 bp):
AAAATTTTCTAAGTTGTTT
Found at i:54996908 original size:19 final size:19
Alignment explanation
Indices: 54996882--54996922 Score: 75
Period size: 18 Copynumber: 2.2 Consensus size: 19
54996872 TTTTTAGGAG
54996882 TTTATTTTTAGGTTAGT-C
1 TTTATTTTTAGGTTAGTCC
54996900 TTTATTTTTAGGTTAGTCC
1 TTTATTTTTAGGTTAGTCC
54996919 TTTA
1 TTTA
54996923 ATTAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 17 0.77
19 5 0.23
ACGTcount: A:0.17, C:0.07, G:0.15, T:0.61
Consensus pattern (19 bp):
TTTATTTTTAGGTTAGTCC
Found at i:55001803 original size:96 final size:96
Alignment explanation
Indices: 55001628--55002391 Score: 1379
Period size: 96 Copynumber: 8.0 Consensus size: 96
55001618 TGTAGGAGAT
* *
55001628 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT--ATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
55001691 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
55001722 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
55001787 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
*
55001818 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
55001883 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* * *
55001914 GTATATATGTGATAAGGCCTAATGACCAATGTGATAAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
55001979 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
*
55002010 GTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
*
55002075 GCCTAATGGCCAATGTGATGAATGCGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
*
55002106 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
*
55002171 GCCTAATGGCCAATGTGATGAATGGGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
55002202 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
55002267 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
55002298 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
*
55002363 GCCTAATGGCCGATGTGATGAATGTGAAA
66 GCCTAATGGCCAATGTGATGAATGTGAAA
55002392 CATATGTGTG
Statistics
Matches: 649, Mismatches: 19, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
94 50 0.08
96 599 0.92
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.28
Consensus pattern (96 bp):
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:55002439 original size:48 final size:48
Alignment explanation
Indices: 55002383--55002582 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
55002373 CGATGTGATG
*
55002383 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
55002431 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
55002479 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
55002527 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
55002575 AATGTGAA
1 AATGTGAA
55002583 TGTTGTAACA
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:55002673 original size:37 final size:37
Alignment explanation
Indices: 55002622--55002712 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
55002612 AACTTGGAAA
55002622 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTGAGACCCGATGACTACGTGTGGAGAT
*
55002660 TATGTCCGGGTGAGACCCGATGACTATGTGTGGAGAT
1 TATGTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
*
55002697 TATGTCCGGGTAAGAC
1 TATGTCCGGGTGAGAC
55002713 TTCGTAATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 47 0.92
38 4 0.08
ACGTcount: A:0.22, C:0.18, G:0.34, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
Found at i:55004659 original size:40 final size:40
Alignment explanation
Indices: 55004613--55004872 Score: 255
Period size: 40 Copynumber: 6.5 Consensus size: 40
55004603 TGAATGATAC
**
55004613 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * *
55004653 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * *
55004693 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* *
55004733 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
55004772 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
55004812 CCGGACTAAGT-TCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
55004851 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
55004873 ATCATGCTGG
Statistics
Matches: 193, Mismatches: 18, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
39 60 0.31
40 127 0.66
41 6 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:55008148 original size:80 final size:80
Alignment explanation
Indices: 55008064--55008211 Score: 181
Period size: 80 Copynumber: 1.9 Consensus size: 80
55008054 TATGGTAACC
* * * *
55008064 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
55008128 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
55008144 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
55008209 CCG
66 CCG
55008212 TTATAATTTC
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 55 0.98
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:55008196 original size:40 final size:39
Alignment explanation
Indices: 55008105--55008211 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 39
55008095 ATCACGATTT
*
55008105 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
55008145 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
*
55008185 GCACAATTGCCTTCGGGTCTTAACCCG
1 GCACAA-TGCCTTCGGGTCTTAGCCCG
55008212 TTATAATTTC
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 55 0.92
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:55016240 original size:40 final size:39
Alignment explanation
Indices: 55016149--55016250 Score: 127
Period size: 40 Copynumber: 2.5 Consensus size: 39
55016139 ATCACGATTT
*
55016149 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
55016189 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
55016229 GCACAATTGCCTTCGGGTCTTA
1 GCACAA-TGCCTTCGGGTCTTA
55016251 ACCCCGTTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 51 0.91
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:55019983 original size:96 final size:96
Alignment explanation
Indices: 55019808--55020763 Score: 1736
Period size: 96 Copynumber: 10.0 Consensus size: 96
55019798 TGTAGGAGAT
* * *
55019808 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT--ATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
55019871 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
55019902 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGCATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
55019967 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
55019998 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
55020063 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
*
55020094 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
55020159 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
*
55020190 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
*
55020255 GCCTAATGGCCAATGTGATGAATGTGAAAGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
55020286 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
*
55020351 GCCTAATGGCCAATGTGATGAATGTGAAAGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
55020382 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
55020447 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
*
55020478 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
*
55020543 GCCTAATGGCCAATGTGATGAATGCGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
55020574 GTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
55020639 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
55020670 GTATATATGTGATAAGGCCTAATGGCCGATGTCATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
*
55020735 GCCTAATGGCCGATGTGATGAATGTGAAA
66 GCCTAATGGCCAATGTGATGAATGTGAAA
55020764 CATATGTGTG
Statistics
Matches: 841, Mismatches: 19, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
94 49 0.06
96 792 0.94
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATACATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:55020811 original size:48 final size:48
Alignment explanation
Indices: 55020755--55020954 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
55020745 CGATGTGATG
*
55020755 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
55020803 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
55020851 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
55020899 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
55020947 AATGTGAA
1 AATGTGAA
55020955 TGTTGTAACA
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:55021048 original size:37 final size:37
Alignment explanation
Indices: 55020994--55021084 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
55020984 AACTTGGAAA
*
55020994 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
55021032 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
55021069 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
55021085 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:55028265 original size:46 final size:46
Alignment explanation
Indices: 55028215--55028390 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
55028205 TGGTTGAGCA
55028215 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
55028261 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
55028306 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
55028354 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
55028391 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:55028371 original size:93 final size:93
Alignment explanation
Indices: 55028212--55028383 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
55028202 GGATGGTTGA
* *
55028212 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
55028277 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
55028305 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
55028370 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
55028384 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:55030392 original size:23 final size:23
Alignment explanation
Indices: 55030350--55030393 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
55030340 TATATTAGTG
*
55030350 AAAGATTTATTGATCAGAAGCGT
1 AAAGATTTATTGAGCAGAAGCGT
* *
55030373 AAAGATTTCTTGAGCTGAAGC
1 AAAGATTTATTGAGCAGAAGC
55030394 AAGGTAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (23 bp):
AAAGATTTATTGAGCAGAAGCGT
Found at i:55035513 original size:40 final size:40
Alignment explanation
Indices: 55035454--55035660 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
55035444 CAATTGAATG
* * * *
55035454 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
55035494 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
55035534 -CATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
55035573 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
55035613 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
55035653 ATATCCGG
1 ATATCCGG
55035661 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
38 2 0.01
39 29 0.21
40 107 0.76
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:55035591 original size:79 final size:80
Alignment explanation
Indices: 55035455--55035660 Score: 247
Period size: 79 Copynumber: 2.6 Consensus size: 80
55035445 AATTGAATGA
* * ** * * *
55035455 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CA
*
55035520 -TTGTGCTAGT-GACTC
65 TTTGTGCAAGTCG-CTC
* * *
55035535 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
*
55035599 TTGTGCAAGTCGTTC
66 TTGTGCAAGTCGCTC
* *
55035614 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
55035661 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
78 2 0.02
79 62 0.57
80 44 0.41
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCAAGTCGCTC
Found at i:55043560 original size:40 final size:40
Alignment explanation
Indices: 55043501--55043708 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
55043491 CAATTGAATG
* * * *
55043501 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
55043541 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
55043581 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
55043621 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
55043661 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
55043701 ATATCCGG
1 ATATCCGG
55043709 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:55043639 original size:80 final size:80
Alignment explanation
Indices: 55043502--55043708 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
55043492 AATTGAATGA
* * ** * * *
55043502 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
55043567 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
55043580 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
55043645 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
55043662 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
55043709 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:55045363 original size:46 final size:46
Alignment explanation
Indices: 55045313--55045488 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
55045303 TGGTTGAGCA
55045313 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
55045359 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
55045404 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
55045452 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
55045489 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:55045469 original size:93 final size:93
Alignment explanation
Indices: 55045310--55045480 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
55045300 GGATGGTTGA
* *
55045310 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
55045375 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
55045403 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
55045468 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
55045481 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:55048462 original size:15 final size:15
Alignment explanation
Indices: 55048442--55048510 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
55048432 GTATCTTGGG
55048442 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
55048457 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
55048472 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
55048487 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
55048502 TTTCTTTAT
1 TTTCTTTAT
55048511 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:55048511 original size:30 final size:30
Alignment explanation
Indices: 55048433--55048520 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
55048423 CATAGTATCG
* * * *
55048433 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
55048463 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
55048493 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
55048521 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:55050927 original size:46 final size:46
Alignment explanation
Indices: 55050877--55051052 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
55050867 TGGTTGAGCA
55050877 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
55050923 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
55050968 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
55051016 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
55051053 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:55051033 original size:93 final size:93
Alignment explanation
Indices: 55050874--55051044 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
55050864 GGATGGTTGA
* *
55050874 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
55050939 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
55050967 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
55051032 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
55051045 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:55055457 original size:46 final size:46
Alignment explanation
Indices: 55055407--55055582 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
55055397 TGGTTGAGCA
55055407 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
55055453 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
55055498 CATCCGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
55055546 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
55055583 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 28 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:55055563 original size:93 final size:93
Alignment explanation
Indices: 55055404--55055575 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
55055394 GGATGGTTGA
*
55055404 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
55055469 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
55055497 GCATCCGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
55055562 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
55055576 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:55059771 original size:11 final size:11
Alignment explanation
Indices: 55059755--55059788 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
55059745 TATGTAGGAT
55059755 TTTATTGAAGA
1 TTTATTGAAGA
*
55059766 TTTATTGAGGA
1 TTTATTGAAGA
*
55059777 TTTTTTGAAGA
1 TTTATTGAAGA
55059788 T
1 T
55059789 ATCCAAACCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (11 bp):
TTTATTGAAGA
Found at i:55069785 original size:38 final size:38
Alignment explanation
Indices: 55069731--55069885 Score: 175
Period size: 38 Copynumber: 3.8 Consensus size: 38
55069721 ACATATTGAT
*
55069731 ACATGTAACGTAGTGCTAAGTGGATATACCACGGTTAA
1 ACATGTAACGTGGTGCTAAGTGGATATACCACGGTTAA
* *
55069769 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACA
1 ACATGTAACGTGGTGCTAAGTGGATATACCACGGTTA-A
* *
55069808 TATATTGATTCATTAACGTGGTGCTAAGTGGATATAGCACGGTTAA
1 -ACA-TG------TAACGTGGTGCTAAGTGGATATACCACGGTTAA
*
55069854 ACATGTAACGTGGTGCTAAGTGGATATGCCAC
1 ACATGTAACGTGGTGCTAAGTGGATATACCAC
55069886 AATTATACAT
Statistics
Matches: 98, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
38 59 0.60
39 1 0.01
40 2 0.02
41 2 0.02
44 2 0.02
45 2 0.02
46 1 0.01
47 29 0.30
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (38 bp):
ACATGTAACGTGGTGCTAAGTGGATATACCACGGTTAA
Found at i:55069825 original size:85 final size:86
Alignment explanation
Indices: 55069658--55069884 Score: 359
Period size: 85 Copynumber: 2.7 Consensus size: 86
55069648 AAAAATCGTG
* * * *
55069658 GTGCTAAGTGGATATACCACGATTATACGTGTAACGTGGTGCTAA-TGGATATACCATGATTACA
1 GTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCATGATTACA
55069722 CATATTGATACATGTAACGTA
66 CATATTGATACATGTAACGTA
*
55069743 GTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACA
1 GTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCATGATTACA
* * *
55069808 TATATTGATTCAT-TAACGTG
66 CATATTGATACATGTAACGTA
*
55069828 GTGCTAAGTGGATATAGCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCA
1 GTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCA
55069885 CAATTATACA
Statistics
Matches: 132, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
85 104 0.79
86 28 0.21
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (86 bp):
GTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCATGATTACA
CATATTGATACATGTAACGTA
Found at i:55069896 original size:38 final size:38
Alignment explanation
Indices: 55069821--55069897 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 38
55069811 ATTGATTCAT
**
55069821 TAACGTGGTGCTAAGTGGATATAGCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATAGCACAATTAAACATG
*
55069859 TAACGTGGTGCTAAGTGGATAT-GCCACAATTATACATG
1 TAACGTGGTGCTAAGTGGATATAG-CACAATTAAACATG
55069897 T
1 T
55069898 TAATTTGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 34 0.97
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATAGCACAATTAAACATG
Found at i:55073156 original size:15 final size:15
Alignment explanation
Indices: 55073136--55073176 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
55073126 CTATAAATGA
55073136 GATTTCCTTATCATG
1 GATTTCCTTATCATG
* *
55073151 GATTTCTTTATCTTG
1 GATTTCCTTATCATG
55073166 GATTTCCTTAT
1 GATTTCCTTAT
55073177 TCTGGGCTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.12, T:0.54
Consensus pattern (15 bp):
GATTTCCTTATCATG
Found at i:55076002 original size:85 final size:85
Alignment explanation
Indices: 55075840--55076077 Score: 345
Period size: 85 Copynumber: 2.8 Consensus size: 85
55075830 GGAATAAAAA
* * * * * * *
55075840 AACGTGGTGCTAAGTGGATATACCATGGTTATACGTGTAACTTGGTGCTAAGTGGATATACTATG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
*
55075905 ATTACACATATTGATACATGT
66 GTTACACATATTGATACAT-T
55075926 AACGTGGTGCTAAGTGGAT-TACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
*
55075990 GTTAC-CATTATTGATTCATT
66 GTTACACA-TATTGATACATT
* *
55076010 AACGTGGTGCTAAATGGATATACCACGGTTAAACATATAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
55076075 GTT
66 GTT
55076078 GTACATGTTA
Statistics
Matches: 139, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
84 21 0.15
85 99 0.71
86 19 0.14
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (85 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
GTTACACATATTGATACATT
Found at i:55080852 original size:14 final size:16
Alignment explanation
Indices: 55080820--55080858 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
55080810 ATTTACATAA
*
55080820 CATATATCACTTATTT
1 CATATATCACTTATGT
55080836 CATATATCAC-T-TGT
1 CATATATCACTTATGT
55080850 CATATATCA
1 CATATATCA
55080859 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.33, C:0.21, G:0.03, T:0.44
Consensus pattern (16 bp):
CATATATCACTTATGT
Found at i:55091596 original size:47 final size:47
Alignment explanation
Indices: 55091524--55091777 Score: 364
Period size: 47 Copynumber: 5.3 Consensus size: 47
55091514 CCCTTCGGGA
* * * * * * *
55091524 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
55091571 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55091618 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55091665 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55091714 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
55091763 CTTATCACATATATA
1 CTTATCACATATATA
55091778 TATCTCATAC
Statistics
Matches: 190, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
47 99 0.52
49 91 0.48
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:55091602 original size:25 final size:25
Alignment explanation
Indices: 55091574--55091652 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
55091564 ACTCGGCCCT
*
55091574 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
55091599 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
55091621 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
55091646 ATCACAT
1 ATCACAT
55091653 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:55091698 original size:49 final size:49
Alignment explanation
Indices: 55091524--55091779 Score: 362
Period size: 49 Copynumber: 5.3 Consensus size: 49
55091514 CCCTTCGGGA
* * * * * *
55091524 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
55091571 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55091618 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55091665 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55091714 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55091763 CTTATCACATATATATA
1 CTTATCACATATATATA
55091780 TCTCATACAT
Statistics
Matches: 191, Mismatches: 14, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
46 1 0.01
47 90 0.47
49 100 0.52
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:55091721 original size:96 final size:96
Alignment explanation
Indices: 55091524--55091779 Score: 374
Period size: 96 Copynumber: 2.7 Consensus size: 96
55091514 CCCTTCGGGA
* * * * * * *
55091524 CTTATCACATTTATACA-CTTCCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATA
1 CTTATCACATATATACACCTT-CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
* *
55091586 CACTTTCACATTCATCACATTGGCCATTCGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
55091618 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
55091683 ACTTTCACATTCATCATATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
55091714 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
55091779 A
64 A
55091780 TCTCATACAT
Statistics
Matches: 147, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
94 44 0.30
95 3 0.02
96 54 0.37
97 1 0.01
98 45 0.31
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:55097417 original size:30 final size:29
Alignment explanation
Indices: 55097323--55097424 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
55097313 TATAGTGAAT
* * *
55097323 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
55097352 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
55097380 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
55097410 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
55097425 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:55105254 original size:30 final size:29
Alignment explanation
Indices: 55105160--55105261 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
55105150 TATAGTGAAT
* * *
55105160 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
55105189 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
55105217 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
55105247 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
55105262 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:55110269 original size:43 final size:43
Alignment explanation
Indices: 55110141--55110315 Score: 124
Period size: 45 Copynumber: 4.1 Consensus size: 43
55110131 GCTATCTCAA
* *
55110141 ATCGATGCC-ACTGTCCCAGACAG-GGTCTTACACG-AATCAAAT
1 ATCGATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAAACACAT
* ** * * * * * *
55110183 AT-GATACTGATGTCCCAGACATGGTCTTACTCGTAACCGCAT
1 ATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAT
* *
55110225 ATCGATGCCAACGTCCCATACGTGGTCTTACATGAAAACACATAT
1 ATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACAC--AT
* * * * *
55110270 ATCGATGCTAACTTCTCAGATGTGGTCTTACACGAAAACATAT
1 ATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAT
55110313 ATC
1 ATC
55110316 AGAATCCTAT
Statistics
Matches: 101, Mismatches: 26, Indels: 11
0.73 0.19 0.08
Matches are distributed among these distances:
41 23 0.23
42 10 0.10
43 32 0.32
45 36 0.36
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
ATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAT
Found at i:55117027 original size:40 final size:40
Alignment explanation
Indices: 55116893--55117107 Score: 251
Period size: 40 Copynumber: 5.5 Consensus size: 40
55116883 TCGAATGATA
* *
55116893 CCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
* *
55116933 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG--TATAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-TGACTATAT
* *
55116972 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
* *
55117012 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
* * * **
55117052 CCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
*
55117091 CC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
55117108 ATACTTGGGT
Statistics
Matches: 149, Mismatches: 21, Indels: 12
0.82 0.12 0.07
Matches are distributed among these distances:
38 14 0.09
39 47 0.32
40 85 0.57
41 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
Found at i:55117028 original size:79 final size:78
Alignment explanation
Indices: 55116893--55117107 Score: 256
Period size: 79 Copynumber: 2.7 Consensus size: 78
55116883 TCGAATGATA
* * *
55116893 CCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAG-TCCCGAAGGCATTT
* *
55116957 GTGCGAGTTG-TATAT
64 ATGCGAG-TGACATAT
*
55116972 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTA
*
55117037 TGCTAGTGACCATAT
65 TGCGAGTGA-CATAT
* * ** *
55117052 CCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAG
55117108 ATACTTGGGT
Statistics
Matches: 119, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
78 17 0.14
79 78 0.66
80 24 0.20
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTAT
GCGAGTGACATAT
Found at i:55125921 original size:40 final size:40
Alignment explanation
Indices: 55125729--55125914 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
55125719 TCGAATGATG
* * *
55125729 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
55125769 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
55125809 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
55125849 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
55125890 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
55125915 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:55125921 original size:80 final size:80
Alignment explanation
Indices: 55125729--55125947 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 80
55125719 TCGAATGATG
* * **
55125729 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
55125793 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
55125809 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
55125871 TCTGTGCGAGTTACTATAA
64 TC-GTGCGAGTTACTA-AA
* **
55125890 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
55125948 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
79 19 0.16
80 90 0.76
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:55129697 original size:37 final size:37
Alignment explanation
Indices: 55129647--55129774 Score: 238
Period size: 37 Copynumber: 3.4 Consensus size: 37
55129637 TTATTACGAA
55129647 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
55129684 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
55129721 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
55129758 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
55129775 TTTCCAAGTT
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
37 84 0.94
38 5 0.06
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:55129872 original size:48 final size:48
Alignment explanation
Indices: 55129814--55129917 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
55129804 TGTTACAACA
55129814 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
*
55129862 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
55129910 TTCACATT
1 TTCACATT
55129918 CATCACATCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:55129966 original size:49 final size:49
Alignment explanation
Indices: 55129909--55130195 Score: 506
Period size: 49 Copynumber: 5.9 Consensus size: 49
55129899 CACACATATA
*
55129909 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
55129958 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
55130005 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
55130054 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
55130103 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
55130152 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
55130196 CATCTCATAC
Statistics
Matches: 228, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 44 0.19
49 184 0.81
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:55132603 original size:40 final size:40
Alignment explanation
Indices: 55132537--55132740 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
55132527 TGTCACAGTC
* * *
55132537 CCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAT
* *
55132577 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGAC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGAT
* *
55132617 CCGAAGGCATTTGTGTTAGCGACTATATCCGGGCTAAG-T
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAT
* * *
55132656 CCCGAAGGCATTTATGCTAGTGACCATATCCGGGCTAAGAC
1 -CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAT
* * **
55132697 CCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGCTAA-AT
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAT
55132734 CCCGAAG
1 -CCGAAG
55132741 ATACTTGGGT
Statistics
Matches: 138, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
37 1 0.01
38 12 0.09
39 16 0.12
40 107 0.78
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAT
Found at i:55134786 original size:40 final size:39
Alignment explanation
Indices: 55134729--55134873 Score: 139
Period size: 40 Copynumber: 3.6 Consensus size: 39
55134719 TTGGAATGAT
* * * *
55134729 ATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAA-TAA
* * *
55134769 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TAATAA
** **
55134809 ATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAGTTACCAA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG-TAATAA
*
55134849 ATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCAAT
55134874 ATTGTGAATC
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 81 0.92
41 4 0.05
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATAA
Found at i:55144570 original size:39 final size:39
Alignment explanation
Indices: 55144511--55144668 Score: 235
Period size: 39 Copynumber: 4.1 Consensus size: 39
55144501 TGTGAATATA
* *
55144511 TATACGCGAGAATTATATCCGGACTTCAGATCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
55144550 TATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* * * *
55144589 TATATGCGAGAATTATATCCAGACATCATGTCCGCAAGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
55144628 TATATGCGAGAATTATATCCGAACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
55144667 TA
1 TA
55144669 CGTGCTGGAC
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:55150368 original size:28 final size:27
Alignment explanation
Indices: 55150300--55150371 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 27
55150290 ATATAGTGAG
*
55150300 TTCGCACACTTAGTGCTATATAATCAG
1 TTCGCACACTTAGTGCTATATAATCAA
* *
55150327 CTCGCACACATAGTGCTATATAATCAAA
1 TTCGCACACTTAGTGCTATATAATC-AA
55150355 TTCGCACACTTAGTGCT
1 TTCGCACACTTAGTGCT
55150372 GTACAAATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (27 bp):
TTCGCACACTTAGTGCTATATAATCAA
Found at i:55150444 original size:42 final size:42
Alignment explanation
Indices: 55150380--55150486 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
55150370 CTGTACAAAT
* *
55150380 TTTAAACCCGCACACTTAGTGCCAGTCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
55150422 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
55150464 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
55150487 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.21, C:0.34, G:0.15, T:0.30
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:55150950 original size:2 final size:2
Alignment explanation
Indices: 55150943--55150973 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
55150933 TTAAGGCCGA
55150943 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
55150974 ACACATTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:55158359 original size:28 final size:27
Alignment explanation
Indices: 55158293--55158362 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
55158283 ATAGTGAGTC
*
55158293 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
55158320 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
55158348 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
55158363 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:55162172 original size:40 final size:40
Alignment explanation
Indices: 55162127--55162294 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
55162117 CGGAATATAA
55162127 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
55162167 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
55162207 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
55162247 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
55162287 CCGGATAT
1 CCGGATAT
55162295 TATTCGATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:55168736 original size:28 final size:27
Alignment explanation
Indices: 55168670--55168739 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
55168660 ATAGTGAGTC
*
55168670 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
55168697 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
55168725 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
55168740 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:55168812 original size:42 final size:42
Alignment explanation
Indices: 55168748--55168854 Score: 205
Period size: 42 Copynumber: 2.5 Consensus size: 42
55168738 CTGTACAAAT
*
55168748 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
55168790 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
55168832 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
55168855 GAGACCAATA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.30
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:55169317 original size:2 final size:2
Alignment explanation
Indices: 55169310--55169342 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
55169300 TTAAGGCCGA
55169310 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
55169343 ACACATTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:55170048 original size:10 final size:10
Alignment explanation
Indices: 55170028--55170061 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
55170018 AACACCAATA
55170028 TTTTGTTTTTC
1 TTTT-TTTTTC
55170039 TTTTTTTTTC
1 TTTTTTTTTC
55170049 TTTTTTTTT-
1 TTTTTTTTTC
55170058 TTTT
1 TTTT
55170062 CAATTTCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 4 0.17
10 15 0.65
11 4 0.17
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:55170052 original size:16 final size:15
Alignment explanation
Indices: 55170028--55170061 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
55170018 AACACCAATA
*
55170028 TTTTGTTTTTCTTTTT
1 TTTTCTTTTT-TTTTT
55170044 TTTTCTTTTTTTTTT
1 TTTTCTTTTTTTTTT
55170059 TTT
1 TTT
55170062 CAATTTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91
Consensus pattern (15 bp):
TTTTCTTTTTTTTTT
Found at i:55170056 original size:14 final size:15
Alignment explanation
Indices: 55170034--55170062 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
55170024 AATATTTTGT
55170034 TTTTCTTTTTTTTTC
1 TTTTCTTTTTTTTTC
55170049 TTTT-TTTTTTTTTC
1 TTTTCTTTTTTTTTC
55170063 AATTTCCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTCTTTTTTTTTC
Found at i:55186621 original size:40 final size:40
Alignment explanation
Indices: 55186585--55186814 Score: 333
Period size: 40 Copynumber: 5.8 Consensus size: 40
55186575 GGATATAGCT
*
55186585 ACTCACTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
55186625 GTTCACACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
55186665 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
55186705 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
55186745 ACT-AGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCA-CACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
55186785 ACT-AGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCA-CACAAATGCCTTCGGGACTTAGCCC
55186815 CGTTATCATC
Statistics
Matches: 180, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
40 178 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:55186714 original size:80 final size:79
Alignment explanation
Indices: 55186559--55186814 Score: 356
Period size: 80 Copynumber: 3.2 Consensus size: 79
55186549 AAACCAAGTA
* * * *
55186559 CCTTCGGGATTTA-ACCGGATATAGCTACTCACTCAAATGCCTTCGGGACTTAGCCCGG-ATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
** *
55186622 GTAGTTCACACAAATG
64 GTAACTCGCACAAATG
55186638 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
55186703 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
55186718 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
* *
55186782 GTCACTAGCACAAATG
64 GTAACTCGCACAAATG
55186798 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
55186815 CGTTATCATC
Statistics
Matches: 162, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
79 14 0.09
80 146 0.90
81 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACTCGCACAAATG
Found at i:55191682 original size:37 final size:37
Alignment explanation
Indices: 55191632--55191781 Score: 237
Period size: 37 Copynumber: 4.1 Consensus size: 37
55191622 ACCTTTAGCT
* * *
55191632 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
55191669 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
55191706 CGGACAAAATCTCCACACGTAGTCATCGAGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * *
55191743 CGGACATACTCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
55191780 CG
1 CG
55191782 AAATATATTT
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.21
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:55192226 original size:47 final size:47
Alignment explanation
Indices: 55191961--55192225 Score: 404
Period size: 47 Copynumber: 5.6 Consensus size: 47
55191951 TTAGCTTTAC
* *
55191961 CACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* *
55192008 CACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * * *
55192055 CACATATATACATGTTCATATTCACCCCATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* *
55192102 CACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
*
55192149 CACATATATGCATGTTCACATTCATCACATAGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* **
55192196 CACATATATACACATTCACATTCATCACAT
1 CACATATATGCATGTTCACATTCATCACAT
55192226 AAAATCCTAA
Statistics
Matches: 196, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 196 1.00
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
Found at i:55198749 original size:40 final size:40
Alignment explanation
Indices: 55198723--55198984 Score: 343
Period size: 40 Copynumber: 6.6 Consensus size: 40
55198713 GCTACTCGTT
* * *
55198723 CAAATGCCTTCGAGACTTAGCCCGG-ATATAGT-AGTTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCA-CTCGCA
* * *
55198763 CAAATGCCTTTGGGACTTAGCCCGG-ATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCACTCGCA
* *
55198803 CAAATGCCTTCTGGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTCGCA
** *
55198843 CAAATGCCTTCGGGACTTAGCTTGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTCGCA
* *
55198883 CAAATGCCTTCGGGACATAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTCGCA
*
55198923 CAAATGCCTTC-GGACTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTCGCA
55198962 CAAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
55198985 CGTTATCATC
Statistics
Matches: 204, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
39 38 0.19
40 163 0.80
41 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTCGCA
Found at i:55202627 original size:38 final size:35
Alignment explanation
Indices: 55202586--55202661 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 35
55202576 TTGATGATAA
*
55202586 GGACATGGACGTGTGTGACCACACGGCCAACCTAC
1 GGACATGGACGTGTGTGACCACACGGCCAACCCAC
55202621 --ACA-GGACGTGTGTGACCACACGGCCAACCCACAC
1 GGACATGGACGTGTGTGACCACACGGCCAA-CC-CAC
55202655 GGACATG
1 GGACATG
55202662 TCCCAAGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
32 24 0.69
33 5 0.14
34 2 0.06
36 3 0.09
37 1 0.03
ACGTcount: A:0.28, C:0.33, G:0.28, T:0.12
Consensus pattern (35 bp):
GGACATGGACGTGTGTGACCACACGGCCAACCCAC
Found at i:55202628 original size:32 final size:31
Alignment explanation
Indices: 55202592--55202658 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 31
55202582 ATAAGGACAT
*
55202592 GGACGTGTGTGACCACACGGCCAACCTACAC
1 GGACGTGTGTGACCACACGGCCAACCCACAC
55202623 AGGACGTGTGTGACCACACGGCCAACCCACAC
1 -GGACGTGTGTGACCACACGGCCAACCCACAC
55202655 GGAC
1 GGAC
55202659 ATGTCCCAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 4 0.12
32 30 0.88
ACGTcount: A:0.27, C:0.36, G:0.27, T:0.10
Consensus pattern (31 bp):
GGACGTGTGTGACCACACGGCCAACCCACAC
Found at i:55215140 original size:29 final size:29
Alignment explanation
Indices: 55215107--55215179 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
55215097 GTGATGAGAT
55215107 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
55215136 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
55215165 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
55215180 GAACTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:55215195 original size:29 final size:29
Alignment explanation
Indices: 55215163--55215245 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 29
55215153 GCTGGAAATA
*
55215163 TATGGCACTAAGTGTGCGAACTCGAAGGG
1 TATGGCACTAAGTGTGCGAACTCGAAGCG
* ** ** *
55215192 TATGGCACTATGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTCGAAGCG
* *
55215221 CATGGCACTAAGTGTGCGAAATCGA
1 TATGGCACTAAGTGTGCGAACTCGA
55215246 GTATTAAGCA
Statistics
Matches: 40, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTCGAAGCG
Found at i:55215197 original size:58 final size:58
Alignment explanation
Indices: 55215134--55215245 Score: 145
Period size: 58 Copynumber: 1.9 Consensus size: 58
55215124 GCTGGAAATA
* * *
55215134 TATGGCACTAAGTGTGCATGCTGGAAAT-ATATGGCACTAAGTGTGCGAACTCGAAGGG
1 TATGGCACTAAGTGTGCAGGCT-GAAATCACATGGCACTAAGTGTGCGAAATCGAAGGG
* * * *
55215192 TATGGCACTATGTGTGCGGGCTTAAATCGCATGGCACTAAGTGTGCGAAATCGA
1 TATGGCACTAAGTGTGCAGGCTGAAATCACATGGCACTAAGTGTGCGAAATCGA
55215246 GTATTAAGCA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
57 4 0.09
58 42 0.91
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (58 bp):
TATGGCACTAAGTGTGCAGGCTGAAATCACATGGCACTAAGTGTGCGAAATCGAAGGG
Found at i:55218505 original size:46 final size:46
Alignment explanation
Indices: 55218438--55218651 Score: 283
Period size: 46 Copynumber: 4.6 Consensus size: 46
55218428 GCCCATCAGC
* * *
55218438 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
* * *
55218484 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
*
55218531 GAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
55218577 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
*
55218623 GAACTCGAACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
55218652 TGCTCAACCA
Statistics
Matches: 147, Mismatches: 12, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
44 2 0.01
45 2 0.01
46 100 0.68
47 28 0.19
48 2 0.01
49 2 0.01
50 3 0.02
51 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
Found at i:55218550 original size:93 final size:93
Alignment explanation
Indices: 55218437--55218605 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 93
55218427 CGCCCATCAG
* *
55218437 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
55218502 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
55218530 CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
55218595 ACGAGTTCGGA
66 ACGAGTTCGGA
55218606 CATTCGCATC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Done.