Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 193 of 378
Found at i:56846756 original size:48 final size:48
Alignment explanation
Indices: 56846661--56846764 Score: 113
Period size: 48 Copynumber: 2.2 Consensus size: 48
56846651 TGTGCTAAGC
* * **
56846661 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAACTAGT
**
56846709 GTAAGACCTATC-GGGAATAGGCATCAGCAC-GGGCAGAGCAGAACTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAACTAGT
*
56846757 ATAAGACC
1 GTAAGACC
56846765 ATAGTTGGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
47 8 0.17
48 39 0.83
ACGTcount: A:0.31, C:0.22, G:0.30, T:0.17
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAACTAGT
Found at i:56850452 original size:38 final size:38
Alignment explanation
Indices: 56850401--56850484 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
56850391 ATTTGATGTG
* * * * *
56850401 TATTCGGGTTAAATCCTGCAGGCTTCGTGTTGGTATTA
1 TATTCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
56850439 TATTCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATTCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
56850477 TATTCGGG
1 TATTCGGG
56850485 CCTTCGTGCC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (38 bp):
TATTCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
Found at i:56850531 original size:43 final size:43
Alignment explanation
Indices: 56850456--56850673 Score: 289
Period size: 43 Copynumber: 5.1 Consensus size: 43
56850446 GATAAATCCC
* * *
56850456 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
56850497 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
56850540 GCAGGCTTAGTGCCGATGATGTGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* **
56850583 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTAACTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * * ** *
56850626 GCA-GCTTCGTGCCAGTGATATGTATTTAGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
56850668 GCAGGC
1 GCAGGC
56850674 GTAATGCCAG
Statistics
Matches: 157, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
41 15 0.10
42 37 0.24
43 105 0.67
ACGTcount: A:0.14, C:0.23, G:0.32, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:56851070 original size:45 final size:45
Alignment explanation
Indices: 56851003--56851088 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
56850993 TTGACTTGAT
* *
56851003 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAAATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAATAC
** *
56851048 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAA
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAA
56851089 CTGATATCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAATAC
Found at i:56856282 original size:16 final size:16
Alignment explanation
Indices: 56856247--56856285 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
56856237 GTAGATCGGC
**
56856247 AAAAGCCGAAATGCTG
1 AAAAGCCGAAATGCCA
56856263 AAAAGCCGAAATGCCA
1 AAAAGCCGAAATGCCA
56856279 AAAAGCC
1 AAAAGCC
56856286 AAAAGTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.23, G:0.21, T:0.08
Consensus pattern (16 bp):
AAAAGCCGAAATGCCA
Found at i:56856578 original size:30 final size:29
Alignment explanation
Indices: 56856508--56856646 Score: 131
Period size: 29 Copynumber: 4.8 Consensus size: 29
56856498 TGAATATAAG
* * *
56856508 GTGATTTGGGCCTAACGGGCCATATAAAA
1 GTGAATTGGGCCTAATGGGCCATATAAAT
*
56856537 GTGATTTGGGCCTAATGGGCCATATAAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* * * *
56856566 GTGAAATTGGGCCTGATAGGCGATATGAAT
1 GTG-AATTGGGCCTAATGGGCCATATAAAT
** *
56856596 GTGAATCAGGCC-GATGGGCCATATAAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
*
56856624 GAG-ATTGGGCC-AAGTGGGCCATA
1 GTGAATTGGGCCTAA-TGGGCCATA
56856647 CACATGTATG
Statistics
Matches: 92, Mismatches: 16, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
27 7 0.08
28 24 0.26
29 37 0.40
30 24 0.26
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATAAAT
Found at i:56863540 original size:28 final size:26
Alignment explanation
Indices: 56863485--56863597 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
56863475 AGCATCGCTG
* *
56863485 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
56863511 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
56863539 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
56863566 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
56863594 CCAG
1 CCAG
56863598 GACACTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
26 6 0.08
27 39 0.50
28 33 0.42
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:56863570 original size:55 final size:54
Alignment explanation
Indices: 56863485--56863597 Score: 165
Period size: 55 Copynumber: 2.1 Consensus size: 54
56863475 AGCATCGCTG
*
56863485 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCA
* * *
56863539 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
56863594 CCAG
1 CCAG
56863598 GACACTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 19 0.36
55 34 0.64
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
Found at i:56870226 original size:27 final size:27
Alignment explanation
Indices: 56870191--56870303 Score: 115
Period size: 27 Copynumber: 4.1 Consensus size: 27
56870181 AGCATCGCTG
* *
56870191 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
56870217 CCAGATACAGATAATAGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
* *
56870245 CCA-AAATAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
* *
56870272 CCAAAT-CAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAA--TGTGGCAGAGCCA
56870300 CCAG
1 CCAG
56870304 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
26 6 0.08
27 36 0.49
28 31 0.42
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.18
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:56870268 original size:55 final size:54
Alignment explanation
Indices: 56870198--56870302 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 54
56870188 CTGCCAGAAC
* *
56870198 AGATAATGTGACAGAGTCACCAGATACAGATAA-TAGTGGCAGAGCCACCAAAAT
1 AGATAATGTGACAGAGCCACCAAAT-CAGATAATTAGTGGCAGAGCCACCAAAAT
* * *
56870252 AGATATATGTGGCAGAGCCACCAAATCAGATAATTTGTGGCATAGCCACCA
1 AGATA-ATGTGACAGAGCCACCAAATCAGATAATTAGTGGCAGAGCCACCA
56870303 GGACGCTTCC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
54 12 0.27
55 32 0.73
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (54 bp):
AGATAATGTGACAGAGCCACCAAATCAGATAATTAGTGGCAGAGCCACCAAAAT
Found at i:56870758 original size:8 final size:8
Alignment explanation
Indices: 56870723--56870754 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
56870713 AAATACCGGT
56870723 ATTTCGGC
1 ATTTCGGC
56870731 ATTTCGGC
1 ATTTCGGC
56870739 ATTTCGGC
1 ATTTCGGC
*
56870747 TTTTCGGC
1 ATTTCGGC
56870755 TTTTGCTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.09, C:0.25, G:0.25, T:0.41
Consensus pattern (8 bp):
ATTTCGGC
Found at i:56873694 original size:40 final size:40
Alignment explanation
Indices: 56873637--56873788 Score: 193
Period size: 40 Copynumber: 3.8 Consensus size: 40
56873627 TCGAATGATG
* ** *
56873637 TCCGGGCTAAGTACCGAAGGC-TTTGTGCTGAGTGACCATA
1 TCCGGACTAAGTACCGAAGGCATTTGTGC-GAGTTCCCAAA
56873677 TCCGGACTAAG-ATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAGTA-CCGAAGGCATTTGTGCGAGTTCCCAAA
56873717 TCCGGACTAAG-ATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAGTA-CCGAAGGCATTTGTGCGAGTTCCCAAA
** *
56873757 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGACTAAGTACCGAAGGCATTTGTGCGAG
56873789 CTATTATAAC
Statistics
Matches: 102, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 94 0.92
41 7 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGTACCGAAGGCATTTGTGCGAGTTCCCAAA
Found at i:56878514 original size:40 final size:39
Alignment explanation
Indices: 56878354--56878516 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
56878344 TGTGTATGAA
*
56878354 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
56878393 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGACAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
56878432 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
56878471 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
56878511 TGTGCG
1 TGTGCG
56878517 GGTTACCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:56878532 original size:40 final size:40
Alignment explanation
Indices: 56878371--56878552 Score: 154
Period size: 39 Copynumber: 4.6 Consensus size: 40
56878361 ATTGTGATAT
* *** *
56878371 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * * * ** *
56878410 CCGGGCTAAG-CCCGAAGACAATGGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
56878449 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
56878488 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
56878528 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
56878553 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
39 79 0.64
40 45 0.36
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:56886429 original size:40 final size:39
Alignment explanation
Indices: 56886269--56886431 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
56886259 TGTGTATGAA
*
56886269 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
56886308 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
56886347 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
56886386 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
56886426 TGTGCG
1 TGTGCG
56886432 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:56886447 original size:40 final size:39
Alignment explanation
Indices: 56886269--56886462 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
56886259 TGTGTATGAA
* *
56886269 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
56886308 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
56886347 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
56886386 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
56886426 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
56886463 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:56892188 original size:28 final size:27
Alignment explanation
Indices: 56892140--56892245 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
56892130 CTGCCAAAAT
** *
56892140 AGATAATGTAACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
*
56892167 AGATAATCATGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
56892194 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
56892221 AGATAATTTGTGGCATAGCCACCAG
1 AGATAA--TGTGGCAGAGCCACCAG
56892246 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
26 1 0.01
27 36 0.53
28 31 0.46
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:56896048 original size:56 final size:56
Alignment explanation
Indices: 56895917--56896050 Score: 205
Period size: 56 Copynumber: 2.4 Consensus size: 56
56895907 TAGACAGGGT
* * * *
56895917 CTTAGTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACATGGT
1 CTTACTCGCACACATATATTGAAGTCACATATCGATGCCAACGTATTAAACATGGC
* * *
56895973 CTTACTTGCACACATATATTGAAGTCACATATCGATGCCAACGTCTTAAACGTGGC
1 CTTACTCGCACACATATATTGAAGTCACATATCGATGCCAACGTATTAAACATGGC
56896029 CTTACTCGCACACATATATTGA
1 CTTACTCGCACACATATATTGA
56896051 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 70 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (56 bp):
CTTACTCGCACACATATATTGAAGTCACATATCGATGCCAACGTATTAAACATGGC
Found at i:56900045 original size:20 final size:20
Alignment explanation
Indices: 56900000--56900045 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
56899990 TGAAAATAGT
*
56900000 AAAAAATTACGAAAAAAGAA
1 AAAAAATTACGAAAAAACAA
*
56900020 AAAAAATTA-GAAATAACAA
1 AAAAAATTACGAAAAAACAA
56900039 AATAAAA
1 AA-AAAA
56900046 ATAAAAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.76, C:0.04, G:0.07, T:0.13
Consensus pattern (20 bp):
AAAAAATTACGAAAAAACAA
Found at i:56900049 original size:14 final size:13
Alignment explanation
Indices: 56900020--56900103 Score: 53
Period size: 14 Copynumber: 6.1 Consensus size: 13
56900010 GAAAAAAGAA
*
56900020 AAAAAATTAGAAAT
1 AAAAAA-TAAAAAT
56900034 AACAAAATAAAAAT
1 AA-AAAATAAAAAT
*
56900048 AAAAACTAAAATGAT
1 AAAAAATAAAA--AT
* **
56900063 AAAATATATGAA-
1 AAAAAATAAAAAT
*
56900075 AAAAATTAAAATAT
1 AAAAAATAAAA-AT
56900089 AAAAAATTAAAAAT
1 AAAAAA-TAAAAAT
56900103 A
1 A
56900104 TAAGCATAAG
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
12 7 0.13
13 10 0.19
14 18 0.34
15 18 0.34
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:56900059 original size:26 final size:26
Alignment explanation
Indices: 56900021--56900103 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 26
56900011 AAAAAAGAAA
*
56900021 AAAAATTAGAAATAACAAAATAAAAAT
1 AAAAATTA-AAATAAAAAAATAAAAAT
* * **
56900048 AAAAACTAAAATGATAAAATATATGAA-
1 AAAAATTAAAAT-A-AAAAAATAAAAAT
56900075 AAAAATTAAAATATAAAAAATTAAAAAT
1 AAAAATTAAAATA-AAAAAA-TAAAAAT
56900103 A
1 A
56900104 TAAGCATAAG
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
26 11 0.26
27 23 0.53
28 9 0.21
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.22
Consensus pattern (26 bp):
AAAAATTAAAATAAAAAAATAAAAAT
Found at i:56900094 original size:15 final size:16
Alignment explanation
Indices: 56900074--56900106 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
56900064 AAATATATGA
56900074 AAAAAATT-AAAATAT
1 AAAAAATTAAAAATAT
56900089 AAAAAATTAAAAATAT
1 AAAAAATTAAAAATAT
56900105 AA
1 AA
56900107 GCATAAGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAAAATTAAAAATAT
Found at i:56904237 original size:30 final size:30
Alignment explanation
Indices: 56904203--56904259 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
56904193 CACGGACTGG
56904203 CACATGGGCGTA-TGGCCAGCCCATGTGGCT
1 CACATGGGCG-AGTGGCCAGCCCATGTGGCT
*
56904233 CACATGGGCGAGTGGCCAGCCCGTGTG
1 CACATGGGCGAGTGGCCAGCCCATGTG
56904260 AAAATGCCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.16, C:0.30, G:0.37, T:0.18
Consensus pattern (30 bp):
CACATGGGCGAGTGGCCAGCCCATGTGGCT
Found at i:56906475 original size:22 final size:22
Alignment explanation
Indices: 56906449--56906493 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
56906439 ATCCACGATG
56906449 ACTAAAAGAACTAGTAATAACT
1 ACTAAAAGAACTAGTAATAACT
56906471 ACTAAAAGAACTAGTAATAACT
1 ACTAAAAGAACTAGTAATAACT
56906493 A
1 A
56906494 TCTTTCTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.56, C:0.13, G:0.09, T:0.22
Consensus pattern (22 bp):
ACTAAAAGAACTAGTAATAACT
Found at i:56913156 original size:9 final size:9
Alignment explanation
Indices: 56913142--56913216 Score: 51
Period size: 10 Copynumber: 7.9 Consensus size: 9
56913132 TAAGTTGAAG
56913142 AAAATAAAA
1 AAAATAAAA
56913151 AAAATAAAA
1 AAAATAAAA
**
56913160 CAACTTAAACA
1 -AAAATAAA-A
*
56913171 AAATTAAAA
1 AAAATAAAA
* *
56913180 AGAAAGATAA
1 A-AAATAAAA
*
56913190 AAAATAATA
1 AAAATAAAA
56913199 AAAATAATAA
1 AAAATAA-AA
*
56913209 ATAATAAA
1 AAAATAAA
56913217 TAATAAACTC
Statistics
Matches: 51, Mismatches: 11, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
9 24 0.47
10 26 0.51
11 1 0.02
ACGTcount: A:0.76, C:0.04, G:0.03, T:0.17
Consensus pattern (9 bp):
AAAATAAAA
Found at i:56913220 original size:7 final size:7
Alignment explanation
Indices: 56913186--56913223 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
56913176 AAAAAGAAAG
*
56913186 ATAAAAA
1 ATAAATA
56913193 AT-AATA
1 ATAAATA
56913199 A-AAATA
1 ATAAATA
56913205 ATAAATA
1 ATAAATA
56913212 ATAAATA
1 ATAAATA
56913219 ATAAA
1 ATAAA
56913224 CTCAATGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
6 9 0.32
7 19 0.68
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
ATAAATA
Found at i:56913317 original size:14 final size:13
Alignment explanation
Indices: 56913282--56913370 Score: 52
Period size: 14 Copynumber: 6.2 Consensus size: 13
56913272 AAAAATACGG
*
56913282 AAAAAGAAAAAATT
1 AAAAATAAAAAA-T
*
56913296 AGAAATAACAAAAT
1 AAAAATAA-AAAAT
56913310 AAAAATAATAAAAT
1 AAAAATAA-AAAAT
56913324 GAAATATATAAAAAATT
1 -AAA-A-ATAAAAAA-T
**
56913341 AAAAATATAAGTAT
1 AAAAATA-AAAAAT
* *
56913355 AAGAATAATAAAT
1 AAAAATAAAAAAT
56913368 AAA
1 AAA
56913371 TTAATTAGGA
Statistics
Matches: 58, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
13 5 0.09
14 29 0.50
15 11 0.19
16 8 0.14
17 5 0.09
ACGTcount: A:0.72, C:0.01, G:0.06, T:0.21
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:56914241 original size:61 final size:63
Alignment explanation
Indices: 56914108--56914241 Score: 161
Period size: 60 Copynumber: 2.2 Consensus size: 63
56914098 ACTGGGCCTA
*
56914108 AGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTAGGCCAT
1 AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCAT
* * * * * *
56914170 AGCCC-CTTACAG-TATCAGAG-TATACTGGGCC-TAGCCCATATCAGTATCAATCTGGGTCGT
1 AGCCCTATTACAGAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCAT
56914230 AGCCCTATTACA
1 AGCCCTATTACA
56914242 AGTCATGATA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
60 31 0.51
61 22 0.36
62 8 0.13
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (63 bp):
AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCAT
Found at i:56923544 original size:42 final size:41
Alignment explanation
Indices: 56923499--56923663 Score: 134
Period size: 42 Copynumber: 3.9 Consensus size: 41
56923489 ACATTAGGGT
* *
56923499 TATGAGTTTACGTGTAAGACCATATCTGGGATATGGCATCGT
1 TATGAGATT-CGTGTAAGACCATATCTGGGATATGGCATCGA
* * * ** *
56923541 TATGAGATTTTGTGTAAGACAATGTCTGGGGCATGGCATCAA
1 TATGAGA-TTCGTGTAAGACCATATCTGGGATATGGCATCGA
* * * *
56923583 TATGAAAATT-GTGTAAGACCATAGCTGGGCTATTGGCATTGA
1 TATG-AGATTCGTGTAAGACCATATCTGGGATA-TGGCATCGA
* * * *
56923625 TATGAGATCCCATGTAAGACCATATATAGGATATGGCAT
1 TATGAGAT-TCGTGTAAGACCATATCTGGGATATGGCAT
56923664 TGGTATGATT
Statistics
Matches: 95, Mismatches: 23, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
41 20 0.21
42 54 0.57
43 21 0.22
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.31
Consensus pattern (41 bp):
TATGAGATTCGTGTAAGACCATATCTGGGATATGGCATCGA
Found at i:56932112 original size:40 final size:40
Alignment explanation
Indices: 56932068--56932247 Score: 134
Period size: 40 Copynumber: 4.5 Consensus size: 40
56932058 CATTCAAATA
* * *
56932068 CCTTCAGGACATAGCCCGG-TTATCGTAGCTCGCACAAAGG
1 CCTTCAGGACATAACCCGGATT-TAGTAACTCGCACAAAGG
* * *
56932108 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCAGGACATAACCCGGATTTAGTAACTCGCACAAAGG
* ** * *
56932148 CCTTC-GGATCTTAGTCCGAATTTAGTAACTCGCACAAATG
1 CCTTCAGGA-CATAACCCGGATTTAGTAACTCGCACAAAGG
* ** * *
56932188 CCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCACAAA-G
1 CCTTCAGGA-CATAACCCGGATTTAGTAAC-TCGCACAAAGG
* *
56932228 CCTTCAGGACTTAGCCCGGA
1 CCTTCAGGACATAACCCGGA
56932248 CATCATTCGA
Statistics
Matches: 123, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
39 3 0.02
40 107 0.87
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCAGGACATAACCCGGATTTAGTAACTCGCACAAAGG
Found at i:56941354 original size:39 final size:39
Alignment explanation
Indices: 56941311--56941438 Score: 166
Period size: 39 Copynumber: 3.3 Consensus size: 39
56941301 CTTTAACCCA
* *
56941311 GATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCG
1 GATATTTTTCCAGCATGTAGCCTGCGGACCTCATGTCCG
* ** * *
56941350 GATATATTTATAGCATATAGCCTGCGGATCTCATGTCCG
1 GATATTTTTCCAGCATGTAGCCTGCGGACCTCATGTCCG
* *
56941389 GATATTTTTCCAGCATGTAGCCTGCAGACCTCATGTCTG
1 GATATTTTTCCAGCATGTAGCCTGCGGACCTCATGTCCG
56941428 GATATATTTTC
1 GATAT-TTTTC
56941439 AATCTCATAC
Statistics
Matches: 74, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
39 69 0.93
40 5 0.07
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (39 bp):
GATATTTTTCCAGCATGTAGCCTGCGGACCTCATGTCCG
Found at i:56944008 original size:40 final size:40
Alignment explanation
Indices: 56943964--56944230 Score: 439
Period size: 40 Copynumber: 6.7 Consensus size: 40
56943954 CTACTTGCTT
*
56943964 AAATGCCTTCGGGACTTAGCTCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
56944004 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* *
56944044 AAATGCCTTCAGGACTTAGCCCGATTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
56944084 AAATGCCTTCGGGAATTAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
56944124 AAATTCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* * *
56944164 AAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCAC
56944203 AAATGCCTTCGGGACTTAGCCCGGTTAT
1 AAATGCCTTCGGGACTTAGCCCGGTTAT
56944231 CATCCGAATA
Statistics
Matches: 211, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
38 1 0.00
39 34 0.16
40 175 0.83
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
Found at i:56947735 original size:40 final size:40
Alignment explanation
Indices: 56947650--56947800 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
56947640 AATTGAATGA
* * *
56947650 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
56947690 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
56947731 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
56947770 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
56947801 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:56947814 original size:40 final size:40
Alignment explanation
Indices: 56947687--56947814 Score: 134
Period size: 40 Copynumber: 3.2 Consensus size: 40
56947677 ATGCTGGAAA
* * * *
56947687 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
56947727 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
56947767 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
56947807 TTATATCC
1 TTATATCC
56947815 AGTTATATTC
Statistics
Matches: 69, Mismatches: 17, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:56950965 original size:35 final size:35
Alignment explanation
Indices: 56950919--56950991 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
56950909 CCATGGTTTG
*
56950919 ATGCCTCATAGCATGCTACAAACTCTACTATCATA
1 ATGCCTCATAGCATGCTACAAACTCTACTACCATA
*
56950954 ATGCCTCATAGCATGCTACAAACTCTACTGCCATA
1 ATGCCTCATAGCATGCTACAAACTCTACTACCATA
56950989 ATG
1 ATG
56950992 GAAGAAGCTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.33, C:0.29, G:0.11, T:0.27
Consensus pattern (35 bp):
ATGCCTCATAGCATGCTACAAACTCTACTACCATA
Found at i:56956980 original size:30 final size:30
Alignment explanation
Indices: 56956946--56957006 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
56956936 TTCCCGAGCC
56956946 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
56956976 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
56957006 T
1 T
56957007 GAGGTAAAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:56960296 original size:17 final size:17
Alignment explanation
Indices: 56960274--56960316 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
56960264 ATTTCATTTA
**
56960274 AAATGTCAATTTCCATC
1 AAATGTCAATTAACATC
*
56960291 AAATGTCCATTAACATC
1 AAATGTCAATTAACATC
56960308 AAAT-TCAAT
1 AAATGTCAAT
56960317 GCAAACATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.33
Consensus pattern (17 bp):
AAATGTCAATTAACATC
Found at i:56965359 original size:47 final size:47
Alignment explanation
Indices: 56965305--56965435 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 47
56965295 CACAATTGAT
* *
56965305 AAGTACCTATACCATGGCCCATAACCAAATCAAGGTAACTTATCCCG
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCG
* * * * *
56965352 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCT
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCG
* *
56965399 AAATACCTATATCATGGCCCATAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
56965436 TTATTCACAC
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCG
Found at i:56969929 original size:29 final size:29
Alignment explanation
Indices: 56969896--56969996 Score: 148
Period size: 29 Copynumber: 3.5 Consensus size: 29
56969886 GACGAGATCA
56969896 GCACTAAGTGTGCGTGCTGGAAATATATG
1 GCACTAAGTGTGCGTGCTGGAAATATATG
56969925 GCACTAAGTGTGCGTGCTGGAAATATATG
1 GCACTAAGTGTGCGTGCTGGAAATATATG
** * *
56969954 GCACTAAGTGTGCAAGCTGGAAAAATACG
1 GCACTAAGTGTGCGTGCTGGAAATATATG
**
56969983 GCACTGGGTGTGCG
1 GCACTAAGTGTGCG
56969997 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GCACTAAGTGTGCGTGCTGGAAATATATG
Found at i:56973011 original size:40 final size:39
Alignment explanation
Indices: 56972846--56973029 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
56972836 AAATTGAATG
* * *
56972846 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
56972886 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
56972926 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
56972966 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
56973005 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
56973030 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:56973054 original size:80 final size:81
Alignment explanation
Indices: 56972886--56973074 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
56972876 GCTGGAAATT
* * * *
56972886 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
56972951 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
56972967 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
56973030 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
56973046 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
56973075 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:56981032 original size:40 final size:39
Alignment explanation
Indices: 56980867--56981050 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
56980857 AAATTGAATG
* * *
56980867 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
56980907 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
56980947 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
56980987 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
56981026 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
56981051 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:56981075 original size:80 final size:81
Alignment explanation
Indices: 56980907--56981095 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
56980897 GCTGGAAATT
* * * *
56980907 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
56980972 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
56980988 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
56981051 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
56981067 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
56981096 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:56983066 original size:40 final size:40
Alignment explanation
Indices: 56983011--56983188 Score: 272
Period size: 40 Copynumber: 4.5 Consensus size: 40
56983001 CGGATGGTAA
* *
56983011 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
56983051 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
56983091 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
56983131 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
56983171 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
56983189 TACTTGGTTT
Statistics
Matches: 130, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
39 17 0.13
40 112 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:56985845 original size:24 final size:24
Alignment explanation
Indices: 56985818--56985877 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
56985808 ATTATGTTCA
56985818 CACACATAGTGCCATAGTAAATCG
1 CACACATAGTGCCATAGTAAATCG
56985842 CACACATAGTGCCATAGTAAATCG
1 CACACATAGTGCCATAGTAAATCG
56985866 CACACATAGTGC
1 CACACATAGTGC
56985878 ATTTGAGATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.20
Consensus pattern (24 bp):
CACACATAGTGCCATAGTAAATCG
Found at i:56994105 original size:29 final size:29
Alignment explanation
Indices: 56994066--56994140 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
56994056 GGTTGAGAGA
* *
56994066 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
56994095 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
56994124 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
56994141 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:56997948 original size:29 final size:28
Alignment explanation
Indices: 56997914--56998016 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
56997904 TACTCAATCA
*
56997914 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
56997943 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
56997972 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
56998001 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
56998017 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:57002633 original size:29 final size:28
Alignment explanation
Indices: 57002599--57002701 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
57002589 TACTCAATCA
*
57002599 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
57002628 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
57002657 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
57002686 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
57002702 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:57007329 original size:29 final size:28
Alignment explanation
Indices: 57007295--57007397 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
57007285 TACTCAATCA
*
57007295 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
57007324 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
57007353 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
57007382 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
57007398 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:57012023 original size:29 final size:28
Alignment explanation
Indices: 57011989--57012091 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
57011979 TACTCAATCA
*
57011989 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
57012018 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
57012047 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
57012076 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
57012092 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:57014583 original size:40 final size:39
Alignment explanation
Indices: 57014497--57014631 Score: 146
Period size: 40 Copynumber: 3.4 Consensus size: 39
57014487 ATGGTAACTG
* ** * * *
57014497 GGCTAAGTCCTGAAGGCATTTGTGATAGTGACTAATTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
*
57014537 GGCTAAGTCCCGAAGGCATTTGTTCGAGTTACTATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
57014576 GGCCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GG-CTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
*
57014616 GGCTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
57014632 TAATTGGTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 20 0.25
40 61 0.75
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:57025437 original size:31 final size:31
Alignment explanation
Indices: 57025402--57025477 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
57025392 TGTTACAATA
*
57025402 AACATGTACTTTTCATGTCATATTTCCAAAT
1 AACATGTACTTTTCATATCATATTTCCAAAT
*
57025433 AACATGTACTTTTCATATCATATTTCCATAT
1 AACATGTACTTTTCATATCATATTTCCAAAT
*
57025464 AACATGTACATTTC
1 AACATGTACTTTTC
57025478 CAAAATCAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (31 bp):
AACATGTACTTTTCATATCATATTTCCAAAT
Found at i:57040509 original size:28 final size:28
Alignment explanation
Indices: 57040440--57040540 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
57040430 GACAAGATTG
* * * *
57040440 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
57040470 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
57040498 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
57040527 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
57040541 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:57049689 original size:26 final size:27
Alignment explanation
Indices: 57049657--57049841 Score: 204
Period size: 26 Copynumber: 7.1 Consensus size: 27
57049647 TACTGAAATG
**
57049657 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
57049684 -CCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAGAATTACCATTTTA
57049710 CCCTCGATTTACA-AATTACC-TTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
57049735 CCCTCAATTTATAGAATTACCA-TTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* **
57049761 CCCTCGATTTACATAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
57049788 CCCT-GATTTACA-AATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
57049813 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAGAATTACCATTTTA
57049840 CC
1 CC
57049842 TCAGTTTACA
Statistics
Matches: 136, Mismatches: 15, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
25 31 0.23
26 72 0.53
27 33 0.24
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:57049750 original size:78 final size:78
Alignment explanation
Indices: 57049657--57049856 Score: 253
Period size: 78 Copynumber: 2.6 Consensus size: 78
57049647 TACTGAAATG
* * *
57049657 CCCTCGATTTGTAGAATTACCATTTTACCTCGATTTATAGAATTACCGTTTCACCCTCGATTTAC
1 CCCTCAATTTATAGAATTACCATTTTACCTCGATTTACAGAATTACCGTTTCACCCT-GATTTAC
57049722 AAATTACC-TTTTA
65 AAATTACCATTTTA
* * *
57049735 CCCTCAATTTATAGAATTACCA-TTTACCCTCGATTTACATAATTACTGTTTTACCCTGATTTAC
1 CCCTCAATTTATAGAATTACCATTTTA-CCTCGATTTACAGAATTACCGTTTCACCCTGATTTAC
57049799 AAATTACCATTTTA
65 AAATTACCATTTTA
* * * * *
57049813 CCCTCAGTTTACAAAATTACCGTTTTACCTC-AGTTTACAAAATT
1 CCCTCAATTTATAGAATTACCATTTTACCTCGA-TTTACAGAATT
57049857 GTGTTTTACC
Statistics
Matches: 107, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
77 20 0.19
78 83 0.78
79 4 0.04
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (78 bp):
CCCTCAATTTATAGAATTACCATTTTACCTCGATTTACAGAATTACCGTTTCACCCTGATTTACA
AATTACCATTTTA
Found at i:57049843 original size:26 final size:27
Alignment explanation
Indices: 57049657--57049869 Score: 194
Period size: 26 Copynumber: 8.2 Consensus size: 27
57049647 TACTGAAATG
** * *
57049657 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * *
57049684 -CCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAAAATTACCGTTTTA
57049710 CCCTCGATTTAC-AAATTACC-TTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * * *
57049735 CCCTCAATTTATAGAATTACC-ATTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* *
57049761 CCCTCGATTTACATAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
57049788 CCCT-GATTTAC-AAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
57049813 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCGTTTTA
**
57049840 -CCTC-AGTTTACAAAATT-GTGTTTTA
1 CCCTCGA-TTTACAAAATTACCGTTTTA
57049865 CCCTC
1 CCCTC
57049870 AATTGTGAAA
Statistics
Matches: 158, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
25 36 0.23
26 91 0.58
27 31 0.20
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCGTTTTA
Found at i:57049935 original size:27 final size:27
Alignment explanation
Indices: 57049872--57050139 Score: 202
Period size: 27 Copynumber: 9.9 Consensus size: 27
57049862 TTACCCTCAA
* * *
57049872 TTGTGAAATTACTGAAATACCC-TGGT
1 TTGTAAAATTACCGAAATACCCTTAGT
*
57049898 TTGTAAAATTACCGAAATACCCTTAAT
1 TTGTAAAATTACCGAAATACCCTTAGT
* *
57049925 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCGAAATACCCTTAGT
* *
57049952 TTGTAAAATTACCAAAATACCAC-TGGT
1 TTGTAAAATTACCGAAATACC-CTTAGT
* * *
57049979 TTGTGAAATTACCGAAATACCCTCAAT
1 TTGTAAAATTACCGAAATACCCTTAGT
* * *
57050006 TTGTAAAATTACCAAAATACCCCT-GA
1 TTGTAAAATTACCGAAATACCCTTAGT
* *
57050032 TT-TACAAAGTTACAGAAATACCCTTGACT
1 TTGTA-AAA-TTACCGAAATACCCTT-AGT
* ** * *
57050061 TTCTAAAAATTATAGAAATACCATTGGT
1 TTGT-AAAATTACCGAAATACCCTTAGT
** * *
57050089 TTACAAAATTACTGAAATACCCTTGGT
1 TTGTAAAATTACCGAAATACCCTTAGT
* * * *
57050116 TTGTAGATTTACCAAAACACCCTT
1 TTGTAAAATTACCGAAATACCCTT
57050140 GTAGGATGAA
Statistics
Matches: 193, Mismatches: 40, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
25 2 0.01
26 26 0.13
27 140 0.73
28 4 0.02
29 16 0.08
30 4 0.02
31 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCGAAATACCCTTAGT
Found at i:57050051 original size:81 final size:80
Alignment explanation
Indices: 57049871--57050055 Score: 268
Period size: 81 Copynumber: 2.3 Consensus size: 80
57049861 TTTACCCTCA
* * *
57049871 ATTGTGAAATTACTGAAATACCCTGGTTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTA
1 ATTGTAAAATTACAGAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTA
57049936 CCAAAATACCCCTAG
66 CCAAAATACCCCTAG
* *
57049951 TTTGTAAAATTACCA-AAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAAT
1 ATTGTAAAATTA-CAGAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAAT
57050015 TACCAAAATACCCCT-G
64 TACCAAAATACCCCTAG
57050031 ATT-TACAAAGTTACAGAAATACCCT
1 ATTGTA-AAA-TTACAGAAATACCCT
57050056 TGACTTTCTA
Statistics
Matches: 94, Mismatches: 6, Indels: 10
0.85 0.05 0.09
Matches are distributed among these distances:
79 2 0.02
80 27 0.29
81 65 0.69
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (80 bp):
ATTGTAAAATTACAGAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTA
CCAAAATACCCCTAG
Found at i:57050205 original size:27 final size:27
Alignment explanation
Indices: 57050167--57050229 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
57050157 AAATACCTAT
*
57050167 TAAAAAGACCGTAA-AGCCCCTGTAGGG
1 TAAAATGACCGTAATA-CCCCTGTAGGG
* *
57050194 TAAAGTGACCGTAATACCCCTGTATGG
1 TAAAATGACCGTAATACCCCTGTAGGG
57050221 TAAAATGAC
1 TAAAATGAC
57050230 GAATATGCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTGTAGGG
Found at i:57051061 original size:25 final size:25
Alignment explanation
Indices: 57051023--57051092 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
57051013 AGGAAGTGCT
* *
57051023 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
57051048 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
57051073 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
57051093 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:57051105 original size:24 final size:24
Alignment explanation
Indices: 57051022--57051117 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
57051012 GAGGAAGTGC
*
57051022 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
57051047 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
57051071 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
57051095 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
57051118 ATATGAATAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:57051116 original size:50 final size:50
Alignment explanation
Indices: 57051023--57051117 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
57051013 AGGAAGTGCT
**
57051023 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
57051073 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
57051118 ATATGAATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:57051360 original size:31 final size:31
Alignment explanation
Indices: 57051311--57051393 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
57051301 CCGCTTAAGT
57051311 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
57051341 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
57051372 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
57051394 TCGAGACTGA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 16 0.31
31 36 0.69
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:57051467 original size:33 final size:33
Alignment explanation
Indices: 57051430--57051492 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
57051420 TTGCTATTTA
* *
57051430 AGGGCTAAGGCCCAGACTGTATTGTTACTGAAT
1 AGGGCTAAGGCCCAGACTGTACTGATACTGAAT
** *
57051463 AGGGCTTTGGCCCAGATTGTACTGATACTG
1 AGGGCTAAGGCCCAGACTGTACTGATACTG
57051493 TTTACTGTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (33 bp):
AGGGCTAAGGCCCAGACTGTACTGATACTGAAT
Found at i:57052206 original size:12 final size:12
Alignment explanation
Indices: 57052189--57052213 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57052179 ATTATTGTTG
57052189 TTTTTTTCTTTT
1 TTTTTTTCTTTT
57052201 TTTTTTTCTTTT
1 TTTTTTTCTTTT
57052213 T
1 T
57052214 CGAAATTGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTTTTCTTTT
Found at i:57053720 original size:52 final size:52
Alignment explanation
Indices: 57053645--57053824 Score: 240
Period size: 52 Copynumber: 3.4 Consensus size: 52
57053635 CTCGATTTGT
** *
57053645 AAAATTACCATTTA-CCTCGATTTATAGAATTACC-GTTTACCCTCGATTTAC
1 AAAATTACGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTC-ATTTAC
57053696 AAAATTACTGTTTTACCCTC-ATTTATAGAATTACCATTTTACCCTCATTTAC
1 AAAATTAC-GTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCATTTAC
* * * *
57053748 AGAATTACGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGCTTAC
1 AAAATTACGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCA-TTTAC
57053801 AAAATTACCGTTTTACCCTCGATT
1 AAAATTA-CGTTTTACCCTCGATT
57053825 GTGAAATTAC
Statistics
Matches: 115, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
51 19 0.17
52 57 0.50
53 23 0.20
54 16 0.14
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (52 bp):
AAAATTACGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCATTTAC
Found at i:57053746 original size:78 final size:79
Alignment explanation
Indices: 57053633--57053824 Score: 257
Period size: 78 Copynumber: 2.4 Consensus size: 79
57053623 TACTGAAATG
* *
57053633 CCCTCGATTTGTAAAATTACCA-TTTA-CCTCGATTTATAGAATTACCG-TTTACCCTCGATTTA
1 CCCTC-ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTA-CGTTTTACCCTCGATTTA
**
57053695 CAAAATTACTGTTTTA
64 CAAAATTACCATTTTA
*
57053711 CCCTCATTTATAGAATTACCATTTTACCCTC-ATTTACAGAATTACGTTTTACCCTCGATTTACA
1 CCCTCATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACGTTTTACCCTCGATTTACA
57053775 AAATTACCATTTTA
66 AAATTACCATTTTA
* * *
57053789 CCCTCAGCTTACAAAATTACCGTTTTACCCTCGATT
1 CCCTCA-TTTATAAAATTACCATTTTACCCTCGATT
57053825 GTGAAATTAC
Statistics
Matches: 100, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
77 16 0.16
78 56 0.56
79 25 0.25
80 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (79 bp):
CCCTCATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACGTTTTACCCTCGATTTACA
AAATTACCATTTTA
Found at i:57053800 original size:27 final size:26
Alignment explanation
Indices: 57053645--57053820 Score: 198
Period size: 26 Copynumber: 6.8 Consensus size: 26
57053635 CTCGATTTGT
* *
57053645 AAAATTACC-ATTTA-CCTCGATTTAT
1 AAAATTACCGTTTTACCCTC-ATTTAC
*
57053670 AGAATTACCG-TTTACCCTCGATTTAC
1 AAAATTACCGTTTTACCCTC-ATTTAC
* *
57053696 AAAATTACTGTTTTACCCTCATTTAT
1 AAAATTACCGTTTTACCCTCATTTAC
* *
57053722 AGAATTACCATTTTACCCTCATTTAC
1 AAAATTACCGTTTTACCCTCATTTAC
*
57053748 AGAATTA-CGTTTTACCCTCGATTTAC
1 AAAATTACCGTTTTACCCTC-ATTTAC
* *
57053774 AAAATTACCATTTTACCCTCAGCTTAC
1 AAAATTACCGTTTTACCCTCA-TTTAC
57053801 AAAATTACCGTTTTACCCTC
1 AAAATTACCGTTTTACCCTC
57053821 GATTGTGAAA
Statistics
Matches: 131, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
25 23 0.18
26 65 0.50
27 43 0.33
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (26 bp):
AAAATTACCGTTTTACCCTCATTTAC
Found at i:57053846 original size:27 final size:26
Alignment explanation
Indices: 57053816--57054005 Score: 161
Period size: 27 Copynumber: 7.1 Consensus size: 26
57053806 TACCGTTTTA
* *
57053816 CCCTCGATTGTGAAATTACTAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * *
57053843 CCCTGTTTGTAAAATTATCGAAATAC
1 CCCTGATTGTAAAATTACCAAAATAC
* *
57053869 CCTTAATTTGTAAAATTACCAAAATAC
1 CCCTGA-TTGTAAAATTACCAAAATAC
*
57053896 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * * *
57053923 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCT-GATTGTAAAATTACCAAAATAC
*
57053949 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-GA-TTGTAAAATTACCAAAATAC
57053977 CCCTGATT-TACAAAGTTA-CAGAAATAC
1 CCCTGATTGTA-AAA-TTACCA-AAATAC
57054004 CC
1 CC
57054006 TTGACTTTCT
Statistics
Matches: 132, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
25 2 0.02
26 30 0.23
27 96 0.73
28 4 0.03
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (26 bp):
CCCTGATTGTAAAATTACCAAAATAC
Found at i:57053921 original size:54 final size:53
Alignment explanation
Indices: 57053823--57053978 Score: 199
Period size: 54 Copynumber: 2.9 Consensus size: 53
57053813 TTACCCTCGA
* * *
57053823 TTGTGAAATTACTAAAATACCCCT-GTTTGTAAAATTATCGAAATACCCTTAAT
1 TTGTGAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-TAAT
* **
57053876 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGT
1 TTGTGAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACC-CTAAT
* *
57053930 TTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCC
1 TTGTGAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC
57053979 CTGATTTACA
Statistics
Matches: 91, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
53 27 0.30
54 63 0.69
55 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
TTGTGAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTAAT
Found at i:57053949 original size:81 final size:80
Alignment explanation
Indices: 57053823--57053980 Score: 253
Period size: 81 Copynumber: 2.0 Consensus size: 80
57053813 TTACCCTCGA
* * * * *
57053823 TTGTGAAATTACTAAAATACCCCTGTTTGTAAAATTATCGAAATACCCTTAATTTGTAAAATTAC
1 TTGTAAAATTACCAAAATACCACTGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTAC
57053888 CAAAATACCCCTAGT
66 CAAAATACCCCTAGT
*
57053903 TTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCACT-GTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTA
57053968 CCAAAATACCCCT
65 CCAAAATACCCCT
57053981 GATTTACAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 21 0.30
81 50 0.70
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
TTGTAAAATTACCAAAATACCACTGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTAC
CAAAATACCCCTAGT
Found at i:57054059 original size:28 final size:27
Alignment explanation
Indices: 57054017--57054069 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
57054007 TGACTTTCTA
*
57054017 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGAAAATACCATTGGTTTAC
*
57054044 AAAATTACTGAAAATACCCTTGGTTT
1 AAAATTA-TGAAAATACCATTGGTTT
57054070 GTAGATGTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (27 bp):
AAAATTATGAAAATACCATTGGTTTAC
Found at i:57054167 original size:27 final size:27
Alignment explanation
Indices: 57054130--57054213 Score: 134
Period size: 27 Copynumber: 3.1 Consensus size: 27
57054120 TTAGGTAAAA
57054130 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
57054157 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* *
57054184 GACCGTAATA-CCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCCTGTAGGGTAAAGT
57054211 GAC
1 GAC
57054214 GAATATGCCC
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:57055091 original size:24 final size:24
Alignment explanation
Indices: 57055017--57055084 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
57055007 AGGAAGTGCT
* * *
57055017 AAAAGGGCTATGCCCAGTTTACCG
1 AAAAGGGCTTTGCCCAGTTTATCA
57055041 AAAAGGGCTTTGCCCAGTTTATCA
1 AAAAGGGCTTTGCCCAGTTTATCA
57055065 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTG-CCCAGTT
57055085 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 33 0.82
25 7 0.17
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCAGTTTATCA
Found at i:57055097 original size:24 final size:24
Alignment explanation
Indices: 57055041--57055111 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
57055031 CAGTTTACCG
57055041 AAAAG-GGCTTTG-CCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
57055064 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
57055088 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
57055112 ATTAGAAAGC
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
23 4 0.10
24 22 0.55
25 14 0.35
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:57056540 original size:20 final size:21
Alignment explanation
Indices: 57056506--57056561 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 21
57056496 GATACATGGA
57056506 ATATGATAT--ACATGA-ATG
1 ATATGATATGCACATGATATG
57056524 ATATGATATGCACATGATATG
1 ATATGATATGCACATGATATG
*
57056545 -TATGAAATGCACATGAT
1 ATATGATATGCACATGAT
57056562 GTAATCATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
18 9 0.26
20 22 0.65
21 3 0.09
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (21 bp):
ATATGATATGCACATGATATG
Found at i:57056647 original size:26 final size:26
Alignment explanation
Indices: 57056611--57056700 Score: 141
Period size: 26 Copynumber: 3.6 Consensus size: 26
57056601 AAGGAAGTGC
57056611 AAAAGGG-TTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCTAGTTTATTG
*
57056636 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCTAGTTTATTG
*
57056662 AAAAGGGCTTATG-CCTAGTTTACTG
1 AAAAGGGCTTATGCCCTAGTTTATTG
57056687 AAAAGGGCTT-TGCC
1 AAAAGGGCTTATGCC
57056701 TCAGTTATTA
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
24 2 0.03
25 28 0.47
26 30 0.50
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCTAGTTTATTG
Found at i:57056689 original size:51 final size:49
Alignment explanation
Indices: 57056611--57056719 Score: 150
Period size: 51 Copynumber: 2.2 Consensus size: 49
57056601 AAGGAAGTGC
*
57056611 AAAAGGG-TTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCTAGTTTACTGAAAAGGGCTT-TGCCCCAG-TTATT
*
57056661 GAAAAGGGCTTATG-CCTAGTTTACTGAAAAGGGCTTTGCCTCAGTTATT
1 -AAAAGGGCTTATGCCCTAGTTTACTGAAAAGGGCTTTGCCCCAGTTATT
57056710 AAAAGAGGCT
1 AAAAG-GGCT
57056720 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
48 5 0.09
49 9 0.17
50 7 0.13
51 28 0.52
52 5 0.09
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCTAGTTTACTGAAAAGGGCTTTGCCCCAGTTATT
Found at i:57056719 original size:24 final size:26
Alignment explanation
Indices: 57056611--57056719 Score: 140
Period size: 26 Copynumber: 4.3 Consensus size: 26
57056601 AAGGAAGTGC
57056611 AAAAGGG-TTATGCC-CTAGTTTATTG
1 AAAAGGGCTTATGCCTC-AGTTTATTG
*
57056636 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCTCAGTTTATTG
*
57056662 AAAAGGGCTTATGCCT-AGTTTACTG
1 AAAAGGGCTTATGCCTCAGTTTATTG
57056687 AAAAGGGCTT-TGCCTCAG-TTATT-
1 AAAAGGGCTTATGCCTCAGTTTATTG
57056710 AAAAGAGGCT
1 AAAAG-GGCT
57056720 AGGCCTCCAG
Statistics
Matches: 77, Mismatches: 3, Indels: 9
0.87 0.03 0.10
Matches are distributed among these distances:
23 5 0.06
24 13 0.17
25 27 0.35
26 31 0.40
27 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
AAAAGGGCTTATGCCTCAGTTTATTG
Found at i:57059562 original size:39 final size:39
Alignment explanation
Indices: 57059518--57059752 Score: 411
Period size: 39 Copynumber: 6.1 Consensus size: 39
57059508 ATGCAAGACA
57059518 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
57059557 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
57059596 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
57059635 CTGGAAATGTATCCGGGCTAAAGT-CC-CAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
57059672 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
57059711 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
57059750 CTG
1 CTG
57059753 ATAATATAAT
Statistics
Matches: 186, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
37 34 0.18
38 4 0.02
39 148 0.80
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:57059724 original size:115 final size:117
Alignment explanation
Indices: 57059518--57059752 Score: 411
Period size: 115 Copynumber: 2.0 Consensus size: 117
57059508 ATGCAAGACA
*
57059518 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCC
57059583 CGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
66 CGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
57059635 CTGGAAATGTATCCGGGCTAAAGT-CC-CAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCC
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCC
* ** *
57059698 CGCAGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
66 CGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
57059750 CTG
1 CTG
57059753 ATAATATAAT
Statistics
Matches: 113, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
115 87 0.77
116 2 0.02
117 24 0.21
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (117 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCC
CGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:57067659 original size:39 final size:39
Alignment explanation
Indices: 57067574--57067697 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
57067564 TATGGTAACC
** * *
57067574 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
57067614 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
57067653 CACACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
57067692 CGCACA
1 CGCACA
57067698 TTCATTCACA
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 62 0.79
40 16 0.21
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.22
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:57071733 original size:20 final size:20
Alignment explanation
Indices: 57071708--57071754 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
57071698 GATATGATAT
*
57071708 ACATGA-ATGATATGATACGC
1 ACATGATATG-TATGAAACGC
*
57071728 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAACGC
57071748 ACATGAT
1 ACATGAT
57071755 GTAATCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (20 bp):
ACATGATATGTATGAAACGC
Found at i:57071846 original size:26 final size:26
Alignment explanation
Indices: 57071804--57071923 Score: 154
Period size: 26 Copynumber: 4.7 Consensus size: 26
57071794 GAGGAAGTGC
*
57071804 AAAAGGGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* * * *
57071829 AAAGGGGCTTATGGCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
57071855 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
57071881 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
57071907 AAATGGGCTT-TGCCCCA
1 AAAAGGGCTTATGCCCCA
57071924 ATTATTAAAA
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
25 14 0.17
26 66 0.82
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:57071868 original size:52 final size:52
Alignment explanation
Indices: 57071804--57071939 Score: 172
Period size: 52 Copynumber: 2.7 Consensus size: 52
57071794 GAGGAAGTGC
* *
57071804 AAAAGGGC-TATGCCCCAGTTTATTGAAAGGGGCTTATGGCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCA
* * *
57071855 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCA
* *
57071907 AAATGGGCTT-TGCCCCA-ATTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
57071940 AGGCCTCCAG
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
49 5 0.07
50 9 0.12
51 14 0.19
52 47 0.63
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCA
Found at i:57073577 original size:57 final size:58
Alignment explanation
Indices: 57073514--57073624 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
57073504 AATTTCACAT
* * *
57073514 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCCAAATC
* * * *
57073571 ACCTGTATATGGCCCATTAGGCCCAAATCGCATTTATATATCCCATTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCCA
57073625 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.27
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCCAAATC
Found at i:57073580 original size:29 final size:29
Alignment explanation
Indices: 57073517--57073624 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
57073507 TTCACATACC
* * *
57073517 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
57073545 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
*
57073574 TGTATATGGCCCATTAGGCCCAAATCGCA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* **
57073603 TTTATATATCCCATTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
57073625 GTCACATTCA
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.01
28 17 0.25
29 49 0.72
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:57073868 original size:16 final size:16
Alignment explanation
Indices: 57073847--57073883 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
57073837 GTAGACAAAC
57073847 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCAGCA
**
57073863 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTCAGCA
57073879 TTTCG
1 TTTCG
57073884 ACTTAGACCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.08, C:0.22, G:0.22, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:57074954 original size:16 final size:16
Alignment explanation
Indices: 57074930--57074961 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
57074920 AAGTTTGAGA
57074930 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
*
57074946 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
57074962 GCGTTACATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:57096712 original size:19 final size:20
Alignment explanation
Indices: 57096685--57096725 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
57096675 TAAATTTTTT
*
57096685 AAAATTATTTATTAAAT-AA
1 AAAAATATTTATTAAATGAA
57096704 AAAAATATTTATTAAATGAA
1 AAAAATATTTATTAAATGAA
57096724 AA
1 AA
57096726 TTTTAACATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
AAAAATATTTATTAAATGAA
Found at i:57100299 original size:24 final size:24
Alignment explanation
Indices: 57100261--57100308 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
57100251 CAATATCGAC
* *
57100261 GCCTCTGTCCTAGACAAGGTCTTA
1 GCCTCTATCCCAGACAAGGTCTTA
57100285 GCCTCTATCCCAGACAAGGTCTTA
1 GCCTCTATCCCAGACAAGGTCTTA
57100309 CACAAAATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (24 bp):
GCCTCTATCCCAGACAAGGTCTTA
Found at i:57105365 original size:10 final size:10
Alignment explanation
Indices: 57105350--57105383 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
57105340 CTAGCTCAGA
* *
57105350 CATCGGGGAT
1 CATCGGGAAC
57105360 CATCGGGAAC
1 CATCGGGAAC
57105370 CATCGGGAAC
1 CATCGGGAAC
57105380 CATC
1 CATC
57105384 ATCAAACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.26, C:0.29, G:0.29, T:0.15
Consensus pattern (10 bp):
CATCGGGAAC
Found at i:57106611 original size:20 final size:18
Alignment explanation
Indices: 57106567--57106613 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 18
57106557 AGGAAAACTT
57106567 TATTTTTATTGATTTAGA
1 TATTTTTATTGATTTAGA
57106585 TAGTTTTTATTTGTATTTTA-A
1 TA-TTTTTA-TTG-A-TTTAGA
57106606 TATTTTTA
1 TATTTTTA
57106614 GTTTAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 2 0.08
19 6 0.24
20 9 0.36
21 4 0.16
22 4 0.16
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (18 bp):
TATTTTTATTGATTTAGA
Found at i:57112159 original size:68 final size:68
Alignment explanation
Indices: 57112087--57112238 Score: 195
Period size: 67 Copynumber: 2.2 Consensus size: 68
57112077 CATCATGTGT
* * * *
57112087 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCGTGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCA
57112150 TGTAG
64 TGTAG
* *
57112155 ACAAGAGAGCTACG-G-GATATATGTAGCTAGGTCGCATGCGTGATTCTAGGTGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACTA-GTGAAGGACACCAT
57112218 GTAG
65 GTAG
57112222 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
57112239 TAAACTGGCT
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
64 25 0.34
65 3 0.04
66 3 0.04
67 27 0.37
68 15 0.21
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCATG
TAG
Found at i:57122014 original size:15 final size:15
Alignment explanation
Indices: 57121994--57122023 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
57121984 TACCATTTAG
57121994 TCACATAATAGGTAA
1 TCACATAATAGGTAA
57122009 TCACATAATAGGTAA
1 TCACATAATAGGTAA
57122024 GTTAACATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (15 bp):
TCACATAATAGGTAA
Found at i:57129050 original size:64 final size:66
Alignment explanation
Indices: 57128971--57129132 Score: 195
Period size: 67 Copynumber: 2.5 Consensus size: 66
57128961 AGACATTATG
* * * *
57128971 ATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
*
57129034 T
66 A
* * *
57129035 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
57129100 AA
65 AA
* *
57129102 AT-TGGCTAGGTCACATGGGTGGTACTGAGTG
1 ATGTAGCTAGGTCGCATGGGTGGTACT-AGTG
57129133 TTCAGTATGT
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
64 24 0.30
66 24 0.30
67 33 0.41
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.23
Consensus pattern (66 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
A
Found at i:57133111 original size:41 final size:40
Alignment explanation
Indices: 57132992--57133201 Score: 312
Period size: 40 Copynumber: 5.2 Consensus size: 40
57132982 CAGGATTTAA
* * *
57132992 CCGGATATAGCAAATCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
*
57133032 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* *
57133072 CCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGTAACTAGCAC-AAATGCCTTCGGGACTTAGC
* *
57133113 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* *
57133153 CCGGATATAGTCACTAGCACAAAGTGCCTTCGGGTCTTAGC
1 CCGGATATAGTAACTAGCACAAA-TGCCTTCGGGACTTAGC
57133194 CCGGATAT
1 CCGGATAT
57133202 CATCCGAATA
Statistics
Matches: 155, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
40 95 0.61
41 60 0.39
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:57133126 original size:81 final size:81
Alignment explanation
Indices: 57132978--57133201 Score: 355
Period size: 81 Copynumber: 2.8 Consensus size: 81
57132968 AACCCAAGTA
* * * * *
57132978 CCTTCAGGATTTAA-CCGGATATAG-CAAATCGCAC-AAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATAT
57133040 AGTAACTCGCACAAATG
65 AGTAACTCGCACAAATG
*
57133057 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATATA
57133122 GTAACTCGCACAAATG
66 GTAACTCGCACAAATG
*
57133138 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAGTGCCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATAT
57133202 CATCCGAATA
Statistics
Matches: 134, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
79 11 0.08
80 16 0.12
81 107 0.80
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATATA
GTAACTCGCACAAATG
Found at i:57135874 original size:27 final size:27
Alignment explanation
Indices: 57135844--57135908 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
57135834 TAACATCGAG
57135844 TAAGCATAAAAGAATAGTAAGTTCATA
1 TAAGCATAAAAGAATAGTAAGTTCATA
* *
57135871 TAAGCATAAAAGATTAGTAAGTTCGTA
1 TAAGCATAAAAGAATAGTAAGTTCATA
*
57135898 TAATCATAAAA
1 TAAGCATAAAA
57135909 CAAAACTTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.51, C:0.08, G:0.14, T:0.28
Consensus pattern (27 bp):
TAAGCATAAAAGAATAGTAAGTTCATA
Found at i:57141179 original size:43 final size:43
Alignment explanation
Indices: 57141121--57141307 Score: 290
Period size: 43 Copynumber: 4.4 Consensus size: 43
57141111 TAAATCCCGT
* * *
57141121 AGGCCTAGTG-CGGTGATATGTATTCGGGCCTTCATGCCTAGC
1 AGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
57141163 AGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
1 AGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
*
57141206 AGGCTTCGTGCCGGTGATGTGTATTC-GGCCTTCGTGCCTAGC
1 AGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
*
57141248 AGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
1 AGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
*
57141291 AGG-TGTAATGCCGGTGA
1 AGGCT-TAGTGCCGGTGA
57141308 AATGATATGT
Statistics
Matches: 136, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
42 52 0.38
43 84 0.62
ACGTcount: A:0.13, C:0.24, G:0.34, T:0.29
Consensus pattern (43 bp):
AGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
Found at i:57141248 original size:85 final size:86
Alignment explanation
Indices: 57141131--57141293 Score: 292
Period size: 85 Copynumber: 1.9 Consensus size: 86
57141121 AGGCCTAGTG
57141131 CGGTGATATGTATTCGGGCCTTCATGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTT
1 CGGTGATATGTATTCGGGCCTTCATGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTT
57141196 CGTGCCTAGCAGGCTTCGTGC
66 CGTGCCTAGCAGGCTTCGTGC
* * *
57141217 CGGTGATGTGTATTC-GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTT
1 CGGTGATATGTATTCGGGCCTTCATGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTT
57141281 CGTGCCTAGCAGG
66 CGTGCCTAGCAGG
57141294 TGTAATGCCG
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
85 60 0.81
86 14 0.19
ACGTcount: A:0.12, C:0.25, G:0.34, T:0.30
Consensus pattern (86 bp):
CGGTGATATGTATTCGGGCCTTCATGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTT
CGTGCCTAGCAGGCTTCGTGC
Found at i:57141691 original size:45 final size:42
Alignment explanation
Indices: 57141624--57141731 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
57141614 TTGACTTGAT
* *
57141624 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
57141669 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
57141711 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
57141732 ACAGGCGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:57142958 original size:48 final size:48
Alignment explanation
Indices: 57142863--57142966 Score: 113
Period size: 48 Copynumber: 2.2 Consensus size: 48
57142853 TGTGCTAAGC
* * **
57142863 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAACTAGT
**
57142911 GTAAGACCTATC-GGGAATAGGCATCAGCAC-GGGCAGAGCAGAACTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAACTAGT
*
57142959 ATAAGACC
1 GTAAGACC
57142967 ATAGTTGGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
47 8 0.17
48 39 0.83
ACGTcount: A:0.31, C:0.22, G:0.30, T:0.17
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAACTAGT
Found at i:57146658 original size:43 final size:43
Alignment explanation
Indices: 57146610--57146787 Score: 266
Period size: 43 Copynumber: 4.1 Consensus size: 43
57146600 GATAAATCCC
* *
57146610 GCAGGCCTAGTGCCGGTGATGTGTATTCAGGCCTTCATGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCATGCCTA
*
57146653 GCAGGCTTAGTGCCGGTGATGTGTATTCGAGCCTTCATGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCATGCCTA
* * * **
57146696 GCAGGCTTCGTGTCGGTGATATGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCATGCCTA
* *
57146739 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCATGCCTA
57146782 GCAGGC
1 GCAGGC
57146788 GTAATGTCTG
Statistics
Matches: 123, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 123 1.00
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCATGCCTA
Found at i:57152069 original size:39 final size:40
Alignment explanation
Indices: 57151961--57152145 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
57151951 TCGAATGATG
* * * *
57151961 TCCGGGCTATGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
57152001 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57152041 TCCGGGCTAAG-CCCGACGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57152080 TCCGGGTTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
57152121 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57152146 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57152167 original size:79 final size:78
Alignment explanation
Indices: 57151962--57152178 Score: 210
Period size: 79 Copynumber: 2.7 Consensus size: 78
57151952 CGAATGATGT
* *
57151962 CCGGGCTATGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTATGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
* *
57152025 TGTGCGAGTTACTAATT
62 TGTCCGAGTTACTAATA
* * * *
57152042 CCGGGCTAAG-CCCGACGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTATGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
57152105 GTCCGAGTTACT-ATAA
63 GTCCGAGTTACTAAT-A
* ** *
57152121 CTGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
57152179 TATGTGATTC
Statistics
Matches: 112, Mismatches: 16, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
78 3 0.03
79 65 0.58
80 44 0.39
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTC
CGAGTTACTAATA
Found at i:57156327 original size:40 final size:40
Alignment explanation
Indices: 57156256--57156488 Score: 211
Period size: 40 Copynumber: 5.8 Consensus size: 40
57156246 GGATATAGCG
* * * * *
57156256 ACTCGCTCAATTGTCTTCGGGACATT-GCCCGGTTATAGTG
1 ACTCGCACAAATGCCTTCGGGA-ATTAACCCGGTTATAGTA
* *
57156296 ATTCGCACAATTGCCTTCGGGAATTAACCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGAATTAACCCGG-TTATAGTA
* * * *
57156336 ACTCGCACAAATGCCTTTGGGACTTAACCCGGTTTTGGTA
1 ACTCGCACAAATGCCTTCGGGAATTAACCCGGTTATAGTA
* * * *
57156376 ACTCGCACAAATGCCTTCGGGACTTAACCCAGTTTTGGTA
1 ACTCGCACAAATGCCTTCGGGAATTAACCCGGTTATAGTA
* *
57156416 ACTCGCACAAATGCCTTCGGGAATTGACCCGGATT-TAGTC
1 ACTCGCACAAATGCCTTCGGGAATTAACCCGG-TTATAGTA
* * * * *
57156456 ACTTAGCTCAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGAATTAACCCGG
57156489 ACACCATTCG
Statistics
Matches: 165, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
39 5 0.03
40 132 0.80
41 28 0.17
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGAATTAACCCGGTTATAGTA
Found at i:57165534 original size:40 final size:40
Alignment explanation
Indices: 57165468--57165618 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
57165458 AAATTGAATG
* * *
57165468 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
57165507 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
57165547 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
57165587 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
57165619 ACATGTTATA
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:57173427 original size:40 final size:40
Alignment explanation
Indices: 57173368--57173509 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
57173358 AAATTGAATG
* * *
57173368 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
57173408 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
57173448 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
57173488 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
57173510 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:57173510 original size:40 final size:39
Alignment explanation
Indices: 57173407--57173519 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 39
57173397 TGCTGGAAAT
* * **
57173407 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTCAC
*
57173447 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
*
57173487 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
57173520 ACATGCTTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.05
40 60 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:57177101 original size:14 final size:14
Alignment explanation
Indices: 57177082--57177110 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
57177072 GCTTGGGTAA
57177082 GATAGAAATTGCAT
1 GATAGAAATTGCAT
57177096 GATAGAAATTGCAT
1 GATAGAAATTGCAT
57177110 G
1 G
57177111 TGTTTCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (14 bp):
GATAGAAATTGCAT
Found at i:57190754 original size:43 final size:43
Alignment explanation
Indices: 57190699--57190911 Score: 270
Period size: 43 Copynumber: 5.0 Consensus size: 43
57190689 ATATCGTACA
* * * *
57190699 ATGCCAAC-GTCCCAGATGTGGTCTTACATGTAACCTCATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
57190742 ATGCCACTGTCCCAGACAG-GGTCTTACTCATAAACACATATCG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* *
57190785 ATGCCAAC-ATCCCAGACGTGGTCTTACACATAATCACATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
57190828 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
57190871 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT
1 ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCACATAT
57190912 TGATATCACA
Statistics
Matches: 152, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
42 4 0.03
43 145 0.95
44 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:57190844 original size:86 final size:86
Alignment explanation
Indices: 57190699--57190911 Score: 302
Period size: 86 Copynumber: 2.5 Consensus size: 86
57190689 ATATCGTACA
* * * * *
57190699 ATGCCAACGTCCCAGATGTGGTCTTACATGTAACCTCATATCGATGCCACTGTCCCAGACAG-GG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC-GTGG
*
57190763 TCTTACTCATAAACACATATCG
65 TCTTACACATAAACACATATCG
* *
57190785 ATGCCAACATCCCAGACGTGGTCTTACACATAATCACATATCGATGCCAATGTCCCAGACGTGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGACGTGGT
* *
57190850 CTTACACGTAATCACATATCG
66 CTTACACATAAACACATATCG
* *
57190871 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
57190912 TGATATCACA
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
85 1 0.01
86 111 0.99
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (86 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGACGTGGT
CTTACACATAAACACATATCG
Found at i:57197227 original size:29 final size:29
Alignment explanation
Indices: 57197140--57197227 Score: 133
Period size: 29 Copynumber: 3.1 Consensus size: 29
57197130 GTGAGCATGA
* *
57197140 ATAT-AATGTTATTTGGGCCTAATGGGCG
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
57197168 ACATAAATGTGATTTGGGCCTAAAGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
57197197 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
57197226 AT
1 AT
57197228 GTGAATATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 3 0.06
29 50 0.94
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:57201468 original size:17 final size:18
Alignment explanation
Indices: 57201426--57201474 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
57201416 AGTTGAAAAG
57201426 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
57201445 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
57201462 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
57201475 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:57202461 original size:40 final size:40
Alignment explanation
Indices: 57202332--57202462 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
57202322 TATGCTGGAA
* * *
57202332 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * *
57202372 GCTATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTT
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
* *
57202412 AATCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
*
57202452 ATTAAATCCGG
1 ATTATATCCGG
57202463 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:57203977 original size:43 final size:43
Alignment explanation
Indices: 57203922--57204138 Score: 285
Period size: 43 Copynumber: 5.0 Consensus size: 43
57203912 ATATCGTACA
** * *
57203922 ATGCCAACGTCCCAGACGTGGTCTTACATGTAACCTCATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
* * *
57203965 ATGCC-ACTGTCCCAGACAG-GGTCTTACTCATAAACACATATAG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACATAATCACATATCG
* * * *
57204008 ATGCCTACATCCCAGATGTGGTATTACACATAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
57204051 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
* *
57204094 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
57204137 AT
1 AT
57204139 ATCACATATA
Statistics
Matches: 152, Mismatches: 18, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
42 3 0.02
43 146 0.96
44 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
Found at i:57209249 original size:15 final size:15
Alignment explanation
Indices: 57209226--57209271 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
57209216 ATTATGATAT
57209226 TGTATCTTGGATTTC
1 TGTATCTTGGATTTC
*
57209241 TGTACCTTGGATTTC
1 TGTATCTTGGATTTC
*
57209256 TATATCTTGGATTTC
1 TGTATCTTGGATTTC
57209271 T
1 T
57209272 TTGTCCTGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.15, C:0.15, G:0.17, T:0.52
Consensus pattern (15 bp):
TGTATCTTGGATTTC
Found at i:57209281 original size:15 final size:15
Alignment explanation
Indices: 57209228--57209291 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 15
57209218 TATGATATTG
* *
57209228 TATCTTGGATTTCTG
1 TATCCTGGATTTCTT
*
57209243 TA-CCTTGGATTTCTA
1 TATCC-TGGATTTCTT
*
57209258 TATCTTGGATTTCTT
1 TATCCTGGATTTCTT
* *
57209273 TGTCCTGGACTTCTT
1 TATCCTGGATTTCTT
57209288 TATC
1 TATC
57209292 TCGATTTTCA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
14 1 0.03
15 37 0.95
16 1 0.03
ACGTcount: A:0.14, C:0.19, G:0.16, T:0.52
Consensus pattern (15 bp):
TATCCTGGATTTCTT
Found at i:57209292 original size:30 final size:30
Alignment explanation
Indices: 57209228--57209292 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
57209218 TATGATATTG
*
57209228 TATCTTGGATTTCTGTACCTTGGATTTCTA
1 TATCTTGGATTTCTGTACCTTGGACTTCTA
*
57209258 TATCTTGGATTTCTTTGT-CC-TGGACTTCTT
1 TATCTTGGATTTC--TGTACCTTGGACTTCTA
57209288 TATCT
1 TATCT
57209293 CGATTTTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 26 0.84
31 2 0.06
32 3 0.10
ACGTcount: A:0.14, C:0.18, G:0.15, T:0.52
Consensus pattern (30 bp):
TATCTTGGATTTCTGTACCTTGGACTTCTA
Done.