Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 194 of 378
Found at i:57222973 original size:47 final size:47
Alignment explanation
Indices: 57222904--57223455 Score: 681
Period size: 47 Copynumber: 11.7 Consensus size: 47
57222894 TTTTATGTGT
* *
57222904 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAAGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
57222951 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
57222998 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
57223045 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * * * *
57223092 ATATGTGTGATAACGCCGAATGGCTAATGTGA-AATATGTATGAGATATG-
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGA-ACATGC
* * * * * *
57223141 -TATATGTGGTAAAGCCGAATGGCTAGTGTGA-AATATGTATGAGATATG-
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGA-ACATGC
*
57223189 -TATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
57223235 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
57223282 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * * * *
57223329 ATATGTGTGATAAGGCCAAATGGCTAATGTGA-AATATGTATGAGATATG-
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGA-ACATGC
* *
57223378 -TATATGTGGTAAAGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
57223424 ATATGTGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
57223456 AATATGTATG
Statistics
Matches: 447, Mismatches: 44, Indels: 28
0.86 0.08 0.05
Matches are distributed among these distances:
45 8 0.02
46 8 0.02
47 312 0.70
48 103 0.23
49 8 0.02
50 8 0.02
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:57223444 original size:284 final size:283
Alignment explanation
Indices: 57222905--57223495 Score: 861
Period size: 284 Copynumber: 2.1 Consensus size: 283
57222895 TTTATGTGTA
* *
57222905 TATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAAGCATATATGTGTTAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAAGCATATATGTGATAAGGCCGA
*
57222970 ATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * *
57223035 GTGAACATGCATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
131 GTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATAAATGTGAACATGCATATGTGT
* * * *
57223100 GATAACGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
196 GATAAAGCCGAATGGCCAATGTGAAATATG-ATGAGACATGCATATGTGGTAAAGCCGAATGGCT
*
57223165 AGTGTGAAATATGTATGAGATATG
260 AATGTGAAATATGTATGAGATATG
* * *
57223189 TATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAAGCATATATGTGATAAGGCCGA
*
57223254 ATGGCCAATGTGATGAATGTGAACATGCATATATGTGTTAAGGCCGAATGGCCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * * *
57223319 GTGAACATGCATATGTGTGATAAGGCCAAATGGCTAATGTGA-AATATGTATGAGATATGTATAT
131 GTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATAA-ATG--TGA-ACATGCATAT
* *
57223383 GTG-G-TAAAGCCGAATGGCCAATGTGATGA-ATG-TGA-ACATGCATATGTGTGATAAGGCCGA
192 GTGTGATAAAGCCGAATGGCCAATGTGA-AATATGATGAGACATGCATATGTG-G-TAAAGCCGA
57223443 ATGGCTAATGTGAAATATGTATGAGATATG
254 ATGGCTAATGTGAAATATGTATGAGATATG
* *
57223473 TATATGTGGTAAAGCCGAATGGC
1 TATATGTGATAAGGCCGAATGGC
57223496 TAGTGTGAAA
Statistics
Matches: 277, Mismatches: 23, Indels: 14
0.88 0.07 0.04
Matches are distributed among these distances:
282 11 0.04
283 5 0.02
284 222 0.80
285 23 0.08
286 5 0.02
287 11 0.04
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (283 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAAGCATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
GTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATAAATGTGAACATGCATATGTGT
GATAAAGCCGAATGGCCAATGTGAAATATGATGAGACATGCATATGTGGTAAAGCCGAATGGCTA
ATGTGAAATATGTATGAGATATG
Found at i:57223495 original size:237 final size:235
Alignment explanation
Indices: 57222918--57223455 Score: 918
Period size: 237 Copynumber: 2.3 Consensus size: 235
57222908 ATGAGATAAG
* *
57222918 GCCGAATGGCCAATGTGATGAATGTGAACAAGCATATATGTGTTAAGGCCGAATGGCCAATGTGA
1 GCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTG-TAAGGCCGAATGGCCAATGTGA
57222983 TGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATA
65 TGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATA
*
57223048 TATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAACGCCGAAT
130 TATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAACGCCAAAT
57223113 GGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
195 GGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
* * * * *
57223154 GCCGAATGGCTAGTGTGA-AATATGTATGAGATATGTATATGTGT-TAAGGCCGAATGGCCAATG
1 GCCGAATGGCCAATGTGATGA-ATG--TGA-ACATGCATATGTGTGTAAGGCCGAATGGCCAATG
57223217 TGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
62 TGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
57223282 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCA
127 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAACGCCA
57223347 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
192 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
*
57223391 GCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCTAATGTGA
1 GCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTG-TAAGGCCGAATGGCCAATGTGA
57223456 AATATGTATG
Statistics
Matches: 280, Mismatches: 15, Indels: 14
0.91 0.05 0.05
Matches are distributed among these distances:
234 12 0.04
235 4 0.01
236 40 0.14
237 210 0.75
238 4 0.01
239 10 0.04
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (235 bp):
GCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGTAAGGCCGAATGGCCAATGTGAT
GAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATAT
ATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAACGCCAAATG
GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
Found at i:57223548 original size:95 final size:93
Alignment explanation
Indices: 57223167--57223552 Score: 329
Period size: 95 Copynumber: 4.1 Consensus size: 93
57223157 GAATGGCTAG
* * *
57223167 TGTGAAATATGTATGAGATATGTATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCCAATGTGA-GAATATG-ACA
* * *
57223232 TGCATATGTGTGATAAGGCCGAATGGCC-AA
64 GGCATATGCGTGATAAGGCCGAA-CGCCAAA
* * * * *
57223262 TGTGATGA-ATG--TGA-ACATGCATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGA
1 TGTGA-AATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCCAATGTGA-GAATATG-
* * * * * *
57223323 ACATGCATATGTGTGATAAGGCCAAATGGCTAA
61 ACAGGCATATGCGTGATAAGGCCGAACGCCAAA
*
57223356 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCCAATGTGA-GAATATG-ACA
* * * * *
57223421 TGCATATGTGTGATAAGGCCGAATGGCTAA
64 GGCATATGCGTGATAAGGCCGAACGCCAAA
* * *
57223451 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGA-AATATG-TAGG
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCCAATGTGAGAATATGACAGG
* *
57223514 CGATGTGCGT-ATATCGTGGCCGAACGACCAAA
66 C-ATATGCGTGATA---AGGCCGAACG-CCAAA
57223546 TGTGAAA
1 TGTGAAA
57223553 GGTGTGTATT
Statistics
Matches: 257, Mismatches: 21, Indels: 26
0.85 0.07 0.09
Matches are distributed among these distances:
91 6 0.02
92 10 0.04
93 11 0.04
94 83 0.32
95 139 0.54
96 4 0.02
97 4 0.02
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (93 bp):
TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCCAATGTGAGAATATGACAGG
CATATGCGTGATAAGGCCGAACGCCAAA
Found at i:57223708 original size:37 final size:37
Alignment explanation
Indices: 57223658--57223807 Score: 228
Period size: 37 Copynumber: 4.1 Consensus size: 37
57223648 GGAAATATAT
*
57223658 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
57223695 TCCGGGTAAGACCCGTTGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
57223732 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
57223769 TTCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
57223806 TC
1 TC
57223808 TGAGCTAAAG
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:57225128 original size:40 final size:40
Alignment explanation
Indices: 57225071--57225302 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
57225061 GAGAATTGAG
*
57225071 AGTGATATATCCAGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
57225111 AGTGATATATCCGGGCTAAATCCCGAAGACCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
57225151 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
**
57225191 AGAAATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * * *
57225231 AGTGATGTATTCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* **
57225271 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCA
57225303 ATCATGCTGG
Statistics
Matches: 178, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 178 1.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.24
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
Found at i:57228032 original size:49 final size:49
Alignment explanation
Indices: 57227952--57228211 Score: 407
Period size: 49 Copynumber: 5.3 Consensus size: 49
57227942 CCCTTCGGGA
* * * * * *
57227952 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
57227999 CCTATCACATATATATACACCTTCTCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57228048 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57228097 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57228146 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57228195 CTTATCACATATATATA
1 CTTATCACATATATATA
57228212 TCTCATACAT
Statistics
Matches: 197, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 9 0.05
48 1 0.01
49 187 0.95
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:57233732 original size:40 final size:40
Alignment explanation
Indices: 57233570--57233771 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
57233560 CGAATGATGT
*
57233570 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
57233610 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
57233649 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
57233687 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
57233728 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
57233768 CCGG
1 CCGG
57233772 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:57233734 original size:78 final size:79
Alignment explanation
Indices: 57233569--57233720 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
57233559 TCGAATGATG
* * *
57233569 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
57233634 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
57233649 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
57233712 GTGCAAGTC
65 GTGCAAGTC
57233721 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:57241808 original size:40 final size:40
Alignment explanation
Indices: 57241646--57241847 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
57241636 CGAATGATGT
*
57241646 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
57241686 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
57241725 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
57241763 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
57241804 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
57241844 CCGG
1 CCGG
57241848 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:57241810 original size:78 final size:79
Alignment explanation
Indices: 57241645--57241796 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
57241635 TCGAATGATG
* * *
57241645 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
57241710 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
57241725 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
57241788 GTGCAAGTC
65 GTGCAAGTC
57241797 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:57249773 original size:40 final size:38
Alignment explanation
Indices: 57249716--57249865 Score: 131
Period size: 38 Copynumber: 3.8 Consensus size: 38
57249706 TCGAATGATG
* * *
57249716 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGACTAA-TCCCGAAGGCTTTGTGC-AAGTTACTAAA
* * *
57249756 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGACTA--ATCCCGAAGGC-TTTGTGCAAGTTACTAAA
*
57249796 TCCGGGCTAATCCCGAAGGCTTTGTGCAAGTTACTAAA
1 TCCGGACTAATCCCGAAGGCTTTGTGCAAGTTACTAAA
* ** * *
57249834 CCCGGGTTAGTCCCGAAGGCATTCGTGCAAGT
1 TCCGGACTAATCCCGAAGGC-TTTGTGCAAGT
57249866 CGCTATAACC
Statistics
Matches: 91, Mismatches: 14, Indels: 11
0.78 0.12 0.09
Matches are distributed among these distances:
38 34 0.37
39 18 0.20
40 31 0.34
41 7 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (38 bp):
TCCGGACTAATCCCGAAGGCTTTGTGCAAGTTACTAAA
Found at i:57249839 original size:38 final size:39
Alignment explanation
Indices: 57249716--57249896 Score: 154
Period size: 40 Copynumber: 4.6 Consensus size: 39
57249706 TCGAATGATG
* * *
57249716 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAA-TCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * *
57249756 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTA--ATCCCGAAGGCATTCGTGCAAGTTACTAAA
*
57249796 TCCGGGCTAATCCCGAAGGC-TTTGTGCAAGTTACTAAA
1 TCCGGGCTAATCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
57249834 CCCGGGTTAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 TCCGGGCTAATCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
57249874 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGC-TAATCCCGAAGGCATT
57249897 TGAGCGAGTC
Statistics
Matches: 116, Mismatches: 18, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
38 34 0.29
39 26 0.22
40 48 0.41
41 7 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAATCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:57249878 original size:39 final size:39
Alignment explanation
Indices: 57249769--57249896 Score: 143
Period size: 38 Copynumber: 3.3 Consensus size: 39
57249759 GGACTAGGAT
* * * * *
57249769 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAATC
1 CCGAAGGCATTCGTGCAAGTTACTAAACCCGGGTTAGTC
*
57249808 CCGAAGGC-TTTGTGCAAGTTACTAAACCCGGGTTAGTC
1 CCGAAGGCATTCGTGCAAGTTACTAAACCCGGGTTAGTC
** *
57249846 CCGAAGGCATTCGTGCAAGTCGCTATAA-CCGGGCTTCGTC
1 CCGAAGGCATTCGTGCAAGTTACTA-AACCCGGG-TTAGTC
57249886 CCGAAGGCATT
1 CCGAAGGCATT
57249897 TGAGCGAGTC
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
38 32 0.42
39 26 0.34
40 18 0.24
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCAAGTTACTAAACCCGGGTTAGTC
Found at i:57249907 original size:40 final size:39
Alignment explanation
Indices: 57249835--57249917 Score: 103
Period size: 40 Copynumber: 2.1 Consensus size: 39
57249825 GTTACTAAAC
*
57249835 CCGGGTTAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 CCGGGTTAGTCCCGAAGGCATTCGAGCAAGTCGCTATAA
* * * * *
57249874 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGG-TTAGTCCCGAAGGCATTCGAGCAAGTCGCTATAA
57249914 CCGG
1 CCGG
57249918 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 5 0.14
40 32 0.86
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (39 bp):
CCGGGTTAGTCCCGAAGGCATTCGAGCAAGTCGCTATAA
Found at i:57257848 original size:39 final size:38
Alignment explanation
Indices: 57257805--57257914 Score: 107
Period size: 38 Copynumber: 2.8 Consensus size: 38
57257795 TAATGACTAT
* *
57257805 ATCCGGACTAGGATCCGAAGGCATCGTGCGAGTTAATAA
1 ATCCGGGCTA-GATCCGAAGGCATCGTGCAAGTTAATAA
* * *
57257844 ATCCGGGCTA-ATCCCGAAGGCTTTGTGCAAGTTACTAA
1 ATCCGGGCTAGAT-CCGAAGGCATCGTGCAAGTTAATAA
* *
57257882 ACCCGGGTTA-AGTCCGAAGGCATTCGTGCAAGT
1 ATCCGGGCTAGA-TCCGAAGGCA-TCGTGCAAGT
57257915 CGCTATAACC
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
37 2 0.03
38 38 0.64
39 19 0.32
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
ATCCGGGCTAGATCCGAAGGCATCGTGCAAGTTAATAA
Found at i:57257877 original size:38 final size:38
Alignment explanation
Indices: 57257771--57257914 Score: 130
Period size: 39 Copynumber: 3.7 Consensus size: 38
57257761 AATGATGTCC
* * *
57257771 GGCTAAGTCCCGAAGGCTTTGTGCTAA-TGACTATATCCG
1 GGCTAAGT-CCGAAGGCTTCGTGC-AAGTTACTAAATCCG
* * * * *
57257810 GACTAGGATCCGAAGGCATCGTGCGAGTTAATAAATCCG
1 GGCTAAG-TCCGAAGGCTTCGTGCAAGTTACTAAATCCG
* *
57257849 GGCTAA-TCCCGAAGGCTTTGTGCAAGTTACTAAACCCG
1 GGCTAAGT-CCGAAGGCTTCGTGCAAGTTACTAAATCCG
*
57257887 GGTTAAGTCCGAAGGCATTCGTGCAAGT
1 GGCTAAGTCCGAAGGC-TTCGTGCAAGT
57257915 CGCTATAACC
Statistics
Matches: 83, Mismatches: 17, Indels: 10
0.75 0.15 0.09
Matches are distributed among these distances:
37 1 0.01
38 39 0.47
39 42 0.51
40 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (38 bp):
GGCTAAGTCCGAAGGCTTCGTGCAAGTTACTAAATCCG
Found at i:57257927 original size:39 final size:38
Alignment explanation
Indices: 57257857--57257978 Score: 99
Period size: 39 Copynumber: 3.2 Consensus size: 38
57257847 CGGGCTAATC
* **
57257857 CCGAAGGCTTTGTGCAAGTTACTA-AACCCGGGTTAAGT
1 CCGAAGGCATTGTGCAAGTCGCTATAA-CCGGGTTAAGT
*
57257895 CCGAAGGCATTCGTGCAAGTCGCTATAACCGGGCTT-CGT
1 CCGAAGGCATT-GTGCAAGTCGCTATAACCGGG-TTAAGT
* * * *
57257934 CCCGAAGGCATTGAGCGAGTCG-TATATCC-GGTTAAATT
1 -CCGAAGGCATTGTGCAAGTCGCTATAACCGGGTT-AAGT
57257972 CCGAAGG
1 CCGAAGG
57257979 TACGTGATTC
Statistics
Matches: 69, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
36 2 0.03
37 9 0.13
38 17 0.25
39 26 0.38
40 15 0.22
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (38 bp):
CCGAAGGCATTGTGCAAGTCGCTATAACCGGGTTAAGT
Found at i:57257927 original size:77 final size:78
Alignment explanation
Indices: 57257771--57257942 Score: 181
Period size: 77 Copynumber: 2.2 Consensus size: 78
57257761 AATGATGTCC
* * * *
57257771 GGCTAAGTCCCGAAGGCTTTGTGCTAATGACTATATCCGGACTAGGATCCGAAGGCATCGTGCGA
1 GGCTAAGTCCCGAAGGCTTTGTGCTAATGACTAAACCCGGACTAAGATCCGAAGGCATCGTGCAA
*
57257836 GTTAATAAATCCG
66 GTCAATAAATCCG
* **
57257849 GGCTAA-TCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCGAAGGCATTCGTGC
1 GGCTAAGTCCCGAAGGCTTTGTGCTAA-TGACTAAACCCGGACTAAGATCCGAAGGCA-TCGTGC
**
57257911 AAGTCGCTATAA-CCG
64 AAGTCAATA-AATCCG
**
57257926 GGCTTCGTCCCGAAGGC
1 GGCTAAGTCCCGAAGGC
57257943 ATTGAGCGAG
Statistics
Matches: 78, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
76 12 0.15
77 48 0.62
78 18 0.23
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (78 bp):
GGCTAAGTCCCGAAGGCTTTGTGCTAATGACTAAACCCGGACTAAGATCCGAAGGCATCGTGCAA
GTCAATAAATCCG
Found at i:57265394 original size:80 final size:80
Alignment explanation
Indices: 57265310--57265458 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
57265300 TATGGTAACC
* * * *
57265310 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
57265374 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
57265390 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
57265455 CCGG
66 CCGG
57265459 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:57265400 original size:40 final size:38
Alignment explanation
Indices: 57265351--57265458 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
57265341 ATCACGATTT
*
57265351 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
57265391 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
57265431 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
57265459 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:57272697 original size:13 final size:13
Alignment explanation
Indices: 57272679--57272709 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
57272669 GCTCGACAGG
*
57272679 GACACGCTGGTGT
1 GACACGCTCGTGT
57272692 GACACGCTCGTGT
1 GACACGCTCGTGT
57272705 GACAC
1 GACAC
57272710 ACCCGTGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.19
Consensus pattern (13 bp):
GACACGCTCGTGT
Found at i:57274239 original size:20 final size:21
Alignment explanation
Indices: 57274195--57274241 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
57274185 TTGATATATC
*
57274195 ATGA-AATGCATGATGGTGGAA
1 ATGAGAATGCATGATGAT-GAA
57274216 ATGAGAATGCATGATGAT-AA
1 ATGAGAATGCATGATGATGAA
57274236 ATGAGA
1 ATGAGA
57274242 TAGTAGAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 4 0.17
22 12 0.50
ACGTcount: A:0.43, C:0.04, G:0.30, T:0.23
Consensus pattern (21 bp):
ATGAGAATGCATGATGATGAA
Found at i:57274418 original size:50 final size:48
Alignment explanation
Indices: 57274310--57274486 Score: 215
Period size: 47 Copynumber: 3.7 Consensus size: 48
57274300 GGGCTATTGT
*
57274310 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACA-TTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACAGATATGA
57274356 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAGATATGCGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAGATAT--GA
*
57274406 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATC-G-ACTTGAGATAT--
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAC---AGATATGA
* *
57274453 GAGCTAGTGTAAGACCATGTCTAGAACATGGCAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
57274487 GGGCATCAAA
Statistics
Matches: 118, Mismatches: 5, Indels: 15
0.86 0.04 0.11
Matches are distributed among these distances:
46 14 0.12
47 49 0.42
48 12 0.10
49 1 0.01
50 36 0.31
51 6 0.05
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAGATATGA
Found at i:57284629 original size:43 final size:43
Alignment explanation
Indices: 57284516--57284637 Score: 140
Period size: 42 Copynumber: 2.8 Consensus size: 43
57284506 TCTAGAGCAT
* * *
57284516 TGGCATCGAT-TTGAGATTTACGTGTAAGACCATATCTGGGACAT
1 TGGCATCGATATT-AGA-TTACATGTAAGACCATGTCTGGGACAG
* * *
57284560 TGGCATC-ATATTTGATTTCAAGTAAGACCATGTCTGGGACAG
1 TGGCATCGATATTAGATTACATGTAAGACCATGTCTGGGACAG
* *
57284602 TGGCATCGATATTCGATTACATGTAAGACCACGTCT
1 TGGCATCGATATTAGATTACATGTAAGACCATGTCT
57284638 CAGACGTTGG
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
42 29 0.44
43 28 0.42
44 9 0.14
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (43 bp):
TGGCATCGATATTAGATTACATGTAAGACCATGTCTGGGACAG
Found at i:57287835 original size:17 final size:18
Alignment explanation
Indices: 57287808--57287853 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
57287798 ATGACATCAC
57287808 TTTCAACTATACATC-TAT
1 TTTCAA-TATACATCATAT
57287826 TTTCAATATA-ATCATAT
1 TTTCAATATACATCATAT
*
57287843 ATT-AATATACA
1 TTTCAATATACA
57287854 AGGAAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 9 0.36
17 10 0.40
18 6 0.24
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTCAATATACATCATAT
Found at i:57289306 original size:43 final size:43
Alignment explanation
Indices: 57289250--57289681 Score: 492
Period size: 43 Copynumber: 10.0 Consensus size: 43
57289240 ATATCGTACA
* ** * * *
57289250 ATGCCAACGTCCCAGATATGGTTTTACATGTAGTCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
57289293 ATGCC-ACTATCCCA-A-ATAGGCTCTTACACATCATCACATATCA
1 ATGCCAAC-ATCCCAGACGT-GG-TCTTACACGTAATCACATATCG
* * *
57289336 ATGCCAACATCCCTGGCGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
57289379 ATGCCAACATCCTAGATGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
*
57289422 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATGG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
** *
57289465 ATGCCAATGTCCTAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
57289508 ATGCCAACGTCTCAGACATGGTCTTACACGCAATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * * *
57289551 ATGCCAACGTCCCAAACGTGGTCTTACACATAATCACTTATCC
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
** *
57289594 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCA
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
* ** * *
57289637 ATGCTAATGTCCCAGACGTGGTCTTATACATAATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
57289680 AT
1 AT
57289682 TTAACCGTGC
Statistics
Matches: 336, Mismatches: 47, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
41 2 0.01
42 5 0.01
43 324 0.96
44 4 0.01
45 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:57291055 original size:27 final size:26
Alignment explanation
Indices: 57291014--57291094 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 26
57291004 AGCATGGCTG
* *
57291014 CCAGAACTGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
57291040 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
57291067 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAGAGCCA
57291094 C
1 C
57291095 TTAACAGAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.12
27 42 0.88
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:57291313 original size:98 final size:98
Alignment explanation
Indices: 57291144--57291334 Score: 310
Period size: 98 Copynumber: 1.9 Consensus size: 98
57291134 TATAATCGGC
* * * *
57291144 ACGAAGCCCATAATAACAGCACACAGCCTTCGGTAACATGATCGTCACTCAACCATTGATAACGG
1 ACGAAGCCCACAATAACAGCACACAGCCTTCGGTAACATGACCGACACTCAACCATTGATAACGA
*
57291209 GTCTATAATCGGCACGAAGCCTACAATATTGAT
66 GTCTATAATCAGCACGAAGCCTACAATATTGAT
* * *
57291242 ACGAAGCCCACAATAACGGCACACAGCCTTTGGTAACATGACCGACACTCAGCCATTGATAACGA
1 ACGAAGCCCACAATAACAGCACACAGCCTTCGGTAACATGACCGACACTCAACCATTGATAACGA
57291307 GTCTATAATCAGCACGAAGCCTACAATA
66 GTCTATAATCAGCACGAAGCCTACAATA
57291335 ATGGTACACA
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 85 1.00
ACGTcount: A:0.36, C:0.28, G:0.17, T:0.19
Consensus pattern (98 bp):
ACGAAGCCCACAATAACAGCACACAGCCTTCGGTAACATGACCGACACTCAACCATTGATAACGA
GTCTATAATCAGCACGAAGCCTACAATATTGAT
Found at i:57291435 original size:27 final size:25
Alignment explanation
Indices: 57291385--57291467 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 25
57291375 TCAATCGGTC
*
57291385 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTG-CAAAGCCACCAG
*
57291411 ATACAGATATTGTAGCAGAGCCACCAG
1 A-ACAGATATTGT-GCAAAGCCACCAG
*
57291438 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGT-GCAAAGCCACCAG
57291465 AAC
1 AAC
57291468 GCTTCCTCCA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 8 0.16
27 41 0.82
28 1 0.02
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (25 bp):
AACAGATATTGTGCAAAGCCACCAG
Found at i:57291712 original size:27 final size:28
Alignment explanation
Indices: 57291682--57291740 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 28
57291672 AACACCCTAG
57291682 GGGTAAAAT-GGTAATTTTACCCCACAA
1 GGGTAAAATCGGTAATTTTACCCCACAA
** * *
57291709 GGGT-ATCTCGGTAATTTTACCCTACAG
1 GGGTAAAATCGGTAATTTTACCCCACAA
57291736 GGGTA
1 GGGTA
57291741 TTTCGGTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (28 bp):
GGGTAAAATCGGTAATTTTACCCCACAA
Found at i:57291741 original size:27 final size:27
Alignment explanation
Indices: 57291692--57292051 Score: 426
Period size: 27 Copynumber: 13.4 Consensus size: 27
57291682 GGGTAAAATG
* * *
57291692 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTTTACCCTACAAGGGTATTTCA
* *
57291719 GTAATTTTACCCTACAGGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCA
* * *
57291746 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCA
*
57291773 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCA
* * *
57291800 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCA
*
57291827 GTAATTTTACCCTATC-AGGGTATTTCG
1 GTAATTTTACCCTA-CAAGGGTATTTCA
57291854 GT-ATTTCTACCCTACAAGGGTATTTCA
1 GTAATTT-TACCCTACAAGGGTATTTCA
* * * *
57291881 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTTTACCCTACAAGGGTATTTCA
*
57291908 G-AATTTCTACCCTACAGGGGTATTTCA
1 GTAATTT-TACCCTACAAGGGTATTTCA
57291935 GT-ATTTCTACCCTACAAGGGTATTTCA
1 GTAATTT-TACCCTACAAGGGTATTTCA
*
57291962 GTAATTTTACCCTACAAGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCA
* * *
57291989 GTAATTCTA-CCTA-TAGCGGTATTTTA
1 GTAATTTTACCCTACAAG-GGTATTTCA
*
57292015 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCA
57292042 GTAATTTTAC
1 GTAATTTTAC
57292052 AAACCGAGGG
Statistics
Matches: 292, Mismatches: 31, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
25 2 0.01
26 29 0.10
27 251 0.86
28 10 0.03
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (27 bp):
GTAATTTTACCCTACAAGGGTATTTCA
Found at i:57291784 original size:81 final size:81
Alignment explanation
Indices: 57291692--57292051 Score: 501
Period size: 81 Copynumber: 4.5 Consensus size: 81
57291682 GGGTAAAATG
* * * * *
57291692 GTAATTTTACCCCACAAGGGTATCTCGGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTCAGTAATTCTACC
*
57291757 TTACAGGGGTATTTCA
66 CTACAGGGGTATTTCA
* * *
57291773 GTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAGTAATTTTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTCAGTAATTCTACC
*
57291838 CTATCA-GGGTATTTCG
66 CTA-CAGGGGTATTTCA
* * * *
57291854 GTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTTAG-AATTTCTAC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTCAGTAA-TTCTAC
57291918 CCTACAGGGGTATTTCA
65 CCTACAGGGGTATTTCA
* * *
57291935 GTATTTCTACCCTACAAGGGTATTTCAGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTA-C
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTCAGTAATTCTACC
* * *
57291999 CTATAGCGGTATTTTA
66 CTACAGGGGTATTTCA
57292015 GTAATTCTACCCTACAAGGGTATTTCAGTAATTTTAC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTTTAC
57292052 AAACCGAGGG
Statistics
Matches: 250, Mismatches: 25, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
80 54 0.22
81 192 0.77
82 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTCAGTAATTCTACC
CTACAGGGGTATTTCA
Found at i:57292061 original size:27 final size:27
Alignment explanation
Indices: 57292031--57292263 Score: 201
Period size: 27 Copynumber: 8.7 Consensus size: 27
57292021 CTACCCTACA
57292031 AGGGTATTTCAGTAATTTTACAAACCG
1 AGGGTATTTCAGTAATTTTACAAACCG
** *
57292058 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAACCG
* * *
57292085 AGGGTATTTTATTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAACCG
* * * *
57292111 ATGATATTTCGGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAACCG
* **
57292138 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAACCG
*
57292165 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAACCG
* *
57292191 ACGGTATTTC-GATAATTTTATAAACCG
1 AGGGTATTTCAG-TAATTTTACAAACCG
* * *
57292218 GGGGTACTTT-GGTAATTTTAC-AACTTG
1 AGGGTA-TTTCAGTAATTTTACAAAC-CG
*
57292245 -GGGTGTTTCAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
57292264 GTAAACTAAA
Statistics
Matches: 169, Mismatches: 28, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
25 4 0.02
26 60 0.36
27 98 0.58
28 7 0.04
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAACCG
Found at i:57292140 original size:53 final size:53
Alignment explanation
Indices: 57292031--57292240 Score: 201
Period size: 53 Copynumber: 3.9 Consensus size: 53
57292021 CTACCCTACA
* * * *
57292031 AGGGTATTTCAGTAATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTTAGTAATTTTAC-AATCGAGGGTATTTCGGTAATTTTACAAACCG
* * * *
57292085 AGGGTATTTTATTAATTTTACAATCGATGATATTTCGGTAATTTTATAAACCG
1 AGGGTATTTTAGTAATTTTACAATCGAGGGTATTTCGGTAATTTTACAAACCG
* * * *
57292138 AGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTTAGTAATTTTACAA-TCGAGGGTATTTCGGTAATTTTACAAACCG
* * * * *
57292191 ACGGTA-TTTCGATAATTTTATAAACCGGGGGTACTTT-GGTAATTTTACAA
1 AGGGTATTTTAG-TAATTTTA-CAATCGAGGGTA-TTTCGGTAATTTTACAA
57292241 CTTGGGGTGT
Statistics
Matches: 129, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
52 4 0.03
53 80 0.62
54 45 0.35
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAATCGAGGGTATTTCGGTAATTTTACAAACCG
Found at i:57292155 original size:80 final size:80
Alignment explanation
Indices: 57292035--57292263 Score: 334
Period size: 80 Copynumber: 2.9 Consensus size: 80
57292025 CCTACAAGGG
* * * * *
57292035 TATTTCAGTAATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTATTAA
1 TATTTCGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAA
*
57292100 TTTTACAATCGATGA
66 TTTTACAATCGACGA
*
57292115 TATTTCGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAA
1 TATTTCGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAA
*
57292180 TTTTACAATCGACGG
66 TTTTACAATCGACGA
* * * * *
57292195 TATTTCGATAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAACTTG-GGGTGTTTCAGTAA
1 TATTTCGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAA
57292259 TTTTA
66 TTTTA
57292264 GTAAACTAAA
Statistics
Matches: 136, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
79 18 0.13
80 118 0.87
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (80 bp):
TATTTCGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAA
TTTTACAATCGACGA
Found at i:57294488 original size:27 final size:26
Alignment explanation
Indices: 57294447--57294506 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
57294437 CAGCATGGCT
* *
57294447 GCCAGAACTGATATTGTGACAGAGTC
1 GCCAGAACAGATATTATGACAGAGTC
* *
57294473 GCCAGATACAGATATTATGGCAGAGCC
1 GCCAGA-ACAGATATTATGACAGAGTC
*
57294500 ACCAGAA
1 GCCAGAA
57294507 TCAAATAATG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (26 bp):
GCCAGAACAGATATTATGACAGAGTC
Found at i:57294712 original size:98 final size:98
Alignment explanation
Indices: 57294550--57294781 Score: 374
Period size: 98 Copynumber: 2.4 Consensus size: 98
57294540 CGTGGCACAA
* *
57294550 AGCCATCGATAACGGGTCTATAATCGGCACGAAGCCCAGAATATCGATACGAAGCCCACAATAAC
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCCAGAATATCGATACGAAGCCAACAATAAC
* *
57294615 GGCACACAGCCTTCGGTAACATGATCGGCACTC
66 GACACACAACCTTCGGTAACATGATCGGCACTC
** *
57294648 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCTTATAATATCGATACGAAGCCAACAATAAC
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCCAGAATATCGATACGAAGCCAACAATAAC
*
57294713 GACATACAACCTTCGGTAACATGATCGGCACTC
66 GACACACAACCTTCGGTAACATGATCGGCACTC
* *
57294746 AGCCATTGATAACAGGTCTATAATCAGCACGAAGCC
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCC
57294782 TACAATAATG
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 123 1.00
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (98 bp):
AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCCAGAATATCGATACGAAGCCAACAATAAC
GACACACAACCTTCGGTAACATGATCGGCACTC
Found at i:57294920 original size:27 final size:25
Alignment explanation
Indices: 57294839--57294921 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 25
57294829 TCGATCGGTC
*
57294839 AACAGATATTGTGACAAAGTCACTAG
1 AACAGATATTGTGGCAAAG-CACTAG
* * *
57294865 ATACAGATATTGTGGTAGAGCCACCAG
1 A-ACAGATATTGTGGCAAAG-CACTAG
*
57294892 AACAGATATTTGTGGCATAGCAACTAG
1 AACAGATA-TTGTGGCAAAGC-ACTAG
57294919 AAC
1 AAC
57294922 GCTTCCTCCA
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 9 0.20
27 37 0.80
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.23
Consensus pattern (25 bp):
AACAGATATTGTGGCAAAGCACTAG
Found at i:57295183 original size:27 final size:27
Alignment explanation
Indices: 57295153--57295529 Score: 457
Period size: 27 Copynumber: 14.0 Consensus size: 27
57295143 ATGGTAGTTT
* * * *
57295153 TACCCCACAAGGGTATCTCGGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
*
57295180 TACCATACAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* **
57295207 TACCCTACAGGGTTATTTTGGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* *
57295234 TACCTTATAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* *
57295261 TACCCTACATGGGTATTTTAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* *
57295288 TACCCTACATGGGTATTTTAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* *
57295315 TACCCTATAGGGGTATTTTAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* * *
57295342 TACCCTACAAGGGTATTTCGGTATTTC
1 TACCCTACAGGGGTATTTCAGTAATTC
*
57295369 TACCCTACAGGGGTATTTCAATAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
*
57295396 TACCCTACAGGGGTATTTTAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* *
57295423 TACCCTACAGGGGTATTTCGGTATTTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* *
57295450 TACCCTACAAGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* * * *
57295477 TACCCTATAGTGGTATTTTAATAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* * * *
57295504 TATCTTACAAGGGTATTTCAATAATT
1 TACCCTACAGGGGTATTTCAGTAATT
57295530 TTATAAATCG
Statistics
Matches: 302, Mismatches: 48, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 302 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCAGTAATTC
Found at i:57295543 original size:27 final size:27
Alignment explanation
Indices: 57295513--57295771 Score: 210
Period size: 27 Copynumber: 9.7 Consensus size: 27
57295503 CTATCTTACA
* *
57295513 AGGGTATTTCAATAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
57295540 AGGGTATTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* *
57295567 AGTGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
57295594 AAGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
57295620 ACGGTATTTTAG-AATTTTATAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* * * *
57295646 GGGGTACTTT-GGTAATTTTACAAGTCA
1 AGGGTA-TTTCAGTAATTTTACAAATCG
* *
57295673 AGAGTATTCCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * * *
57295699 ACAGTTTTTCGGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
57295726 GGGGTACTTT-GGTAATTTTAC-AATTG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
57295752 GGGGTATTTCAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
57295772 GTAAACTAAA
Statistics
Matches: 185, Mismatches: 36, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
25 11 0.06
26 64 0.35
27 105 0.57
28 5 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:57295664 original size:79 final size:80
Alignment explanation
Indices: 57295515--57295771 Score: 292
Period size: 79 Copynumber: 3.2 Consensus size: 80
57295505 ATCTTACAAG
* * * * ** * *
57295515 GGTATTTCAATAATTTTATAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGTGTA-TTTCGG
1 GGTATTTCAGTAATTTTA-CAATCGACGGTATTTTAGTAATTTTATAAACTGGGGGTACTTT-GG
57295579 TAATTTTACAAATCGAA
64 TAATTTTACAAATCGAA
57295596 GGTATTTCAGTAATTTTACAATCGACGGTATTTTAG-AATTTTATAAACTGGGGGTACTTTGGTA
1 GGTATTTCAGTAATTTTACAATCGACGGTATTTTAGTAATTTTATAAACTGGGGGTACTTTGGTA
*
57295660 ATTTTACAAGTC-AA
66 ATTTTACAAATCGAA
* * *
57295674 GAGTATTCCAGTAATTTTACAATCGACAGT-TTTTCGGTAATTTTATAAA-TCGGGGGTACTTTG
1 G-GTATTTCAGTAATTTTACAATCGACGGTATTTT-AGTAATTTTATAAACT-GGGGGTACTTTG
* **
57295737 GTAATTTTAC-AATTGGG
63 GTAATTTTACAAATCGAA
57295754 GGTATTTCAGTAATTTTA
1 GGTATTTCAGTAATTTTA
57295772 GTAAACTAAA
Statistics
Matches: 153, Mismatches: 17, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
78 7 0.05
79 77 0.50
80 52 0.34
81 17 0.11
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.40
Consensus pattern (80 bp):
GGTATTTCAGTAATTTTACAATCGACGGTATTTTAGTAATTTTATAAACTGGGGGTACTTTGGTA
ATTTTACAAATCGAA
Found at i:57295785 original size:106 final size:106
Alignment explanation
Indices: 57295526--57295787 Score: 234
Period size: 106 Copynumber: 2.5 Consensus size: 106
57295516 GTATTTCAAT
* * ** * *
57295526 AATTTTATAAA-TCGAGGGTATTTCAGTAATTTT-GCAAACTGAGTGTATTTCGGTAATTTTACA
1 AATTTTATAAACT-GGGGGTATTTCAGTAATTTTAG-AAACTCAAAGTATTCCAGTAATTTTACA
* *
57295589 AATCGAAGGTATTTCAGTAATTTTACAATCGACGGTATTTTAG
64 AATCGAAGGTATTTCAGTAATTTTAAAATCGACGGTACTTTAG
* * *
57295632 AATTTTATAAACTGGGGGTACTTT-GGTAATTTTA-CAAGTCAAGAGTATTCCAGTAATTTTAC-
1 AATTTTATAAACTGGGGGTA-TTTCAGTAATTTTAGAAACTCAA-AGTATTCCAGTAATTTTACA
* * ** *
57295694 AATCGACA-GTTTTTCGGTAATTTTATAAATCGGGGGTACTTTGG
64 AATCGA-AGGTATTTCAGTAATTTTA-AAATCGACGGTACTTTAG
* *
57295738 TAATTTTA-CAATTGGGGGTATTTCAGTAATTTTAGTAAACT-AAAGTATTC
1 -AATTTTATAAACTGGGGGTATTTCAGTAATTTTAG-AAACTCAAAGTATTC
57295788 TAAACAGAAA
Statistics
Matches: 125, Mismatches: 21, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
105 28 0.22
106 81 0.65
107 13 0.10
108 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (106 bp):
AATTTTATAAACTGGGGGTATTTCAGTAATTTTAGAAACTCAAAGTATTCCAGTAATTTTACAAA
TCGAAGGTATTTCAGTAATTTTAAAATCGACGGTACTTTAG
Found at i:57298759 original size:29 final size:29
Alignment explanation
Indices: 57298720--57298794 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
57298710 GGTTGAGAGA
* *
57298720 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
57298749 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
57298778 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
57298795 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:57304832 original size:40 final size:40
Alignment explanation
Indices: 57304720--57304872 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
57304710 GGATATAGCG
* * * * ***
57304720 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
57304760 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
57304800 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
57304840 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
57304873 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:57319636 original size:40 final size:40
Alignment explanation
Indices: 57319570--57319720 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
57319560 AAATTGAATG
* * *
57319570 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
57319609 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
57319649 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
57319689 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
57319721 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:57319734 original size:40 final size:40
Alignment explanation
Indices: 57319607--57319736 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
57319597 ATGCTGGAAA
* * * *
57319607 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
57319647 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
57319687 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
57319727 TTATATCCGG
1 TTATATCCGG
57319737 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:57321500 original size:30 final size:30
Alignment explanation
Indices: 57321466--57321525 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
57321456 ACTTAACAAG
*
57321466 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAACAATAACAAAATTAA
* *
57321496 CAAATGCCTTTAAAACAATAACAAAATTAA
1 CAAATACCTCTAAAACAATAACAAAATTAA
57321526 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.17, G:0.02, T:0.23
Consensus pattern (30 bp):
CAAATACCTCTAAAACAATAACAAAATTAA
Found at i:57322934 original size:13 final size:14
Alignment explanation
Indices: 57322905--57322937 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
57322895 TATAAAAAAA
*
57322905 TTTAAAATTATTTT
1 TTTAAAATTATTGT
57322919 TTTAAAA-TATTGT
1 TTTAAAATTATTGT
57322932 TTTAAA
1 TTTAAA
57322938 TTTAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (14 bp):
TTTAAAATTATTGT
Found at i:57331313 original size:2 final size:2
Alignment explanation
Indices: 57331306--57331347 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
57331296 ATTCATTAAT
57331306 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
57331348 ACCACATTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:57333589 original size:25 final size:25
Alignment explanation
Indices: 57333551--57333605 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
57333541 TCATCTCCCC
57333551 TTTAATTAATTTTTTGTTTTA-TTTT
1 TTTAATTAATTTTTT-TTTTAGTTTT
57333576 TTTAATTAGA-TTTTTTTTTAGTTTT
1 TTTAATTA-ATTTTTTTTTTAGTTTT
57333601 TTTAA
1 TTTAA
57333606 GTTTTGATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 5 0.18
25 22 0.79
26 1 0.04
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (25 bp):
TTTAATTAATTTTTTTTTTAGTTTT
Found at i:57335554 original size:5 final size:5
Alignment explanation
Indices: 57335544--57335584 Score: 59
Period size: 5 Copynumber: 8.6 Consensus size: 5
57335534 ATCTGTGTTC
*
57335544 TTTAT TTTAT TTTAT TTT-T TAT-T TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
57335585 CACAAATTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
4 6 0.18
5 27 0.82
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTAT
Found at i:57335571 original size:18 final size:17
Alignment explanation
Indices: 57335544--57335579 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
57335534 ATCTGTGTTC
57335544 TTTATTTTATTTTATTT
1 TTTATTTTATTTTATTT
57335561 TTTATTTTTATTTTATTT
1 TTTA-TTTTATTTTATTT
57335579 T
1 T
57335580 ATTTTCACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTATTTTATTTTATTT
Found at i:57336898 original size:32 final size:32
Alignment explanation
Indices: 57336862--57336922 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
57336852 TGTATGCATT
57336862 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
57336894 TTAGCATTTTAATAGTTAATGGATGATGG
1 TTAGCATTTTAATAGTTAATGGATGATGG
57336923 ACATGATAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.05, G:0.25, T:0.39
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:57338758 original size:40 final size:40
Alignment explanation
Indices: 57338713--57338879 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
57338703 CGGAATATAA
57338713 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
57338753 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTAAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
57338793 CCGGAT-TAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
57338832 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
57338872 CCGGATAT
1 CCGGATAT
57338880 TATTCAATTT
Statistics
Matches: 103, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 31 0.30
40 72 0.70
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57338835 original size:39 final size:39
Alignment explanation
Indices: 57338729--57338837 Score: 116
Period size: 39 Copynumber: 2.7 Consensus size: 39
57338719 ATAATCACGT
* * *
57338729 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAACCCGGATTAG-ACAACTA
*
57338769 GCACGAATGCCTTCGGGTC-TAAGCCCGGATTAG-CCACTA
1 GCAC-AATGCCTTCGGGTCTTAA-CCCGGATTAGACAACTA
57338808 GCACAATTGCCTTCGGGTCTTAACCCGGAT
1 GCACAA-TGCCTTCGGGTCTTAACCCGGAT
57338838 ATAATTTCCA
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
38 2 0.03
39 28 0.47
40 27 0.45
41 3 0.05
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAACCCGGATTAGACAACTA
Found at i:57341655 original size:26 final size:26
Alignment explanation
Indices: 57341626--57341678 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
57341616 TTTACAGTTT
*
57341626 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
57341652 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
57341678 T
1 T
57341679 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:57346164 original size:5 final size:5
Alignment explanation
Indices: 57346154--57346187 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
57346144 CTGTGTGTTC
57346154 TTTAT TTTAT TTTAT TTTATT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTT
57346188 CACAATTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:57347583 original size:9 final size:9
Alignment explanation
Indices: 57347569--57347618 Score: 73
Period size: 9 Copynumber: 5.6 Consensus size: 9
57347559 ATAAGTATAA
*
57347569 AATTAATCG
1 AATTAACCG
57347578 AATTAACCG
1 AATTAACCG
57347587 AATTAACCG
1 AATTAACCG
* *
57347596 AATTACCCA
1 AATTAACCG
57347605 AATTAACCG
1 AATTAACCG
57347614 AATTA
1 AATTA
57347619 TTTGTATAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.46, C:0.20, G:0.08, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:57347727 original size:18 final size:18
Alignment explanation
Indices: 57347704--57347741 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
57347694 ATTTTTATGT
57347704 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
57347722 TTGGGTTGGGTACTTGGG
1 TTGGGTTGGGTAATTGGG
57347740 TT
1 TT
57347742 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.03, G:0.47, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:57349630 original size:17 final size:17
Alignment explanation
Indices: 57349591--57349631 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
57349581 TGATCATATT
57349591 AAAG-GAAAATATACTC
1 AAAGAGAAAATATACTC
57349607 AAA-AGAAAATATACTC
1 AAAGAGAAAATATACTC
57349623 AAAGAGAAA
1 AAAGAGAAA
57349632 TTAACTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.63, C:0.10, G:0.12, T:0.15
Consensus pattern (17 bp):
AAAGAGAAAATATACTC
Found at i:57352212 original size:44 final size:44
Alignment explanation
Indices: 57352148--57352270 Score: 187
Period size: 44 Copynumber: 2.8 Consensus size: 44
57352138 TACGGTACTA
* *
57352148 ATCGGGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGATATGAT
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
57352192 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * *
57352236 ATCGTG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTG
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTG
57352271 GATGAATTCG
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
42 10 0.14
43 17 0.23
44 47 0.64
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (44 bp):
ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:57353519 original size:22 final size:24
Alignment explanation
Indices: 57353479--57353530 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
57353469 CATTATTCTT
*
57353479 CATTAAAAGGAGCTGTTAT-CATC
1 CATTAAAAGGAGCTATTATACATC
*
57353502 CATTAAAGGGAGC-ATTATACATC
1 CATTAAAAGGAGCTATTATACATC
57353525 C-TTAAA
1 CATTAAA
57353531 TTTGGTAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (24 bp):
CATTAAAAGGAGCTATTATACATC
Found at i:57357590 original size:78 final size:81
Alignment explanation
Indices: 57357472--57357653 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
57357462 TACTCGTTCA
* *
57357472 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
57357535 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
57357551 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
57357614 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
57357630 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
57357654 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:57357653 original size:40 final size:40
Alignment explanation
Indices: 57357470--57357653 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
57357460 GCTACTCGTT
*
57357470 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
57357510 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
57357550 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
57357588 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
57357629 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57357654 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 21 0.16
40 69 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:57365620 original size:78 final size:81
Alignment explanation
Indices: 57365500--57365681 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
57365490 TACTCGTTCA
* *
57365500 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
57365563 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
57365579 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
57365642 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
57365658 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
57365682 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:57365681 original size:40 final size:40
Alignment explanation
Indices: 57365498--57365681 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
57365488 GCTACTCGTT
*
57365498 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
57365538 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
57365578 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
57365616 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
57365657 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57365682 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 21 0.16
40 69 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:57369475 original size:28 final size:28
Alignment explanation
Indices: 57369443--57369512 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
57369433 AATGAGATTG
*
57369443 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
57369471 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
*
57369499 GCATTAAGTGTGCG
1 GCACTAAGTGTGCG
57369513 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 36 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:57373900 original size:41 final size:42
Alignment explanation
Indices: 57373854--57374023 Score: 183
Period size: 42 Copynumber: 4.1 Consensus size: 42
57373844 TAAAATTTGT
*
57373854 TAGGCATAAAGCCT-AGTATAATACACCAGCA-CATAGCCTGC
1 TAGGCATAAAGCCTGA-TATAATACACCAGCATCAAAGCCTGC
*
57373895 TAGGCAATAAA-CCTGAGT-TAATACACC-G-ATATAAAGCCTGC
1 TAGGC-ATAAAGCCTGA-TATAATACACCAGCAT-CAAAGCCTGC
* * *
57373936 TAGGCATTAAGCCTGATATCATACACCGGCATCAAAGCCTGC
1 TAGGCATAAAGCCTGATATAATACACCAGCATCAAAGCCTGC
* *
57373978 TGGGCA-ATAAGCCTGATATCATACACCAGCATCAAAGCCTGC
1 TAGGCATA-AAGCCTGATATAATACACCAGCATCAAAGCCTGC
57374020 TAGG
1 TAGG
57374024 GAATAAGCCT
Statistics
Matches: 111, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 1 0.01
40 6 0.05
41 43 0.39
42 59 0.53
43 2 0.02
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (42 bp):
TAGGCATAAAGCCTGATATAATACACCAGCATCAAAGCCTGC
Found at i:57373989 original size:42 final size:42
Alignment explanation
Indices: 57373874--57374035 Score: 206
Period size: 42 Copynumber: 3.9 Consensus size: 42
57373864 GCCTAGTATA
* * *
57373874 ATACACCAGCA-CATAGCCTGCTAGGCAATAAACCTGAGT-TA
1 ATACACCAGCATCAAAGCCTGCTAGGCAATAAGCCTGA-TATC
* *
57373915 ATACACC-G-ATATAAAGCCTGCTAGGCATTAAGCCTGATATC
1 ATACACCAGCAT-CAAAGCCTGCTAGGCAATAAGCCTGATATC
* *
57373956 ATACACCGGCATCAAAGCCTGCTGGGCAATAAGCCTGATATC
1 ATACACCAGCATCAAAGCCTGCTAGGCAATAAGCCTGATATC
*
57373998 ATACACCAGCATCAAAGCCTGCTAGGGAATAAGCCTGA
1 ATACACCAGCATCAAAGCCTGCTAGGCAATAAGCCTGA
57374036 GATTATATCA
Statistics
Matches: 105, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 2 0.02
41 37 0.35
42 63 0.60
43 2 0.02
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.20
Consensus pattern (42 bp):
ATACACCAGCATCAAAGCCTGCTAGGCAATAAGCCTGATATC
Found at i:57374002 original size:83 final size:84
Alignment explanation
Indices: 57373854--57374036 Score: 214
Period size: 83 Copynumber: 2.2 Consensus size: 84
57373844 TAAAATTTGT
* *
57373854 TAGGCATAAAGCCT-AGTATAATACACCAGCACATAGCCTGCTAGGCAATAAACCTGAGTTAATA
1 TAGGCATTAAGCCTGAGTATAATACACCAGCACAAAGCCTGCTAGGCAATAAACCTGAGTTAATA
*
57373918 CACC-G-ATATAAAGCCTGC
66 CACCAGCAT-CAAAGCCTGC
* * * * *
57373936 TAGGCATTAAGCCTGA-TATCATACACCGGCATCAAAGCCTGCTGGGCAATAAGCCTGA-TATCA
1 TAGGCATTAAGCCTGAGTATAATACACCAGCA-CAAAGCCTGCTAGGCAATAAACCTGAGT-TAA
57373999 TACACCAGCATCAAAGCCTGC
64 TACACCAGCATCAAAGCCTGC
* *
57374020 TAGGGAATAAGCCTGAG
1 TAGGCATTAAGCCTGAG
57374037 ATTATATCAA
Statistics
Matches: 85, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
82 27 0.32
83 32 0.38
84 24 0.28
85 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (84 bp):
TAGGCATTAAGCCTGAGTATAATACACCAGCACAAAGCCTGCTAGGCAATAAACCTGAGTTAATA
CACCAGCATCAAAGCCTGC
Found at i:57374807 original size:28 final size:28
Alignment explanation
Indices: 57374745--57374801 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 28
57374735 AAAAACGTAA
57374745 AAATTAACAAAAACTGAGCTAGTTACAT
1 AAATTAACAAAAACTGAGCTAGTTACAT
57374773 AAATTAACAAAAA-TCGAGCTAGTTACAT
1 AAATTAACAAAAACT-GAGCTAGTTACAT
57374801 A
1 A
57374802 CCTTAATTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 1 0.04
28 27 0.96
ACGTcount: A:0.51, C:0.14, G:0.11, T:0.25
Consensus pattern (28 bp):
AAATTAACAAAAACTGAGCTAGTTACAT
Found at i:57381574 original size:42 final size:42
Alignment explanation
Indices: 57381448--57381577 Score: 149
Period size: 41 Copynumber: 3.1 Consensus size: 42
57381438 TAAAATTTGT
* *
57381448 TAGGCATAAAGCCTAGTATAATACACCGGCA-CAAAGCCTGC
1 TAGGCATTAAGCCTAGTATAATACACCGACATCAAAGCCTGC
* * * * *
57381489 TAGGTAATAAACTTGAGT-TAATACACCAACAT-AAAGCCTGC
1 TAGGCATTAAGCCT-AGTATAATACACCGACATCAAAGCCTGC
* *
57381530 TAGGCATTAAGCCTAATATCATACACCGACATCAAAGCCTGC
1 TAGGCATTAAGCCTAGTATAATACACCGACATCAAAGCCTGC
57381572 TAGGCA
1 TAGGCA
57381578 ATAGCCTGAT
Statistics
Matches: 71, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
40 2 0.03
41 51 0.72
42 18 0.25
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.21
Consensus pattern (42 bp):
TAGGCATTAAGCCTAGTATAATACACCGACATCAAAGCCTGC
Found at i:57384315 original size:79 final size:81
Alignment explanation
Indices: 57384179--57384363 Score: 245
Period size: 79 Copynumber: 2.3 Consensus size: 81
57384169 TCGAATGATG
*
57384179 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
*
57384243 TGTGCGAGTTACTA-A
66 TATGCGAGTTACTATA
* * **
57384258 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
57384320 TTTATGCGAGTTACTATA
64 TTTATGCGAGTTACTATA
* *
57384338 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57384364 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.63
80 33 0.35
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TATGCGAGTTACTATA
Found at i:57384370 original size:40 final size:39
Alignment explanation
Indices: 57384180--57384363 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 39
57384170 CGAATGATGT
* * *
57384180 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
57384220 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
57384260 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57384298 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57384339 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57384364 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57384385 original size:79 final size:78
Alignment explanation
Indices: 57384180--57384396 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
57384170 CGAATGATGT
* *
57384180 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
* *
57384243 TGTGCGAGTTACTAATT
62 TATGCGAGTTACTAATA
*
57384260 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
57384323 ATGCGAGTTACT-ATAA
63 ATGCGAGTTACTAAT-A
* ** *
57384339 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
57384397 TACGTGATTC
Statistics
Matches: 118, Mismatches: 10, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 67 0.57
80 48 0.41
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTATG
CGAGTTACTAATA
Found at i:57392419 original size:79 final size:80
Alignment explanation
Indices: 57392282--57392466 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 80
57392272 TCGAATGATG
*
57392282 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCAGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTACATCCAGACTAAGATCCGAAGGCATTT
*
57392347 GTGCGAGTTACTAAT
66 ATGCGAGTTACTAAT
* * * * **
57392362 TCCGGGGTAAG-CCCGAAGGCATTTGTGC-GAGTTACTACATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTACATCCAGACTAAGAT-CCGAAGGCAT
57392424 TTATGCGAGTTACT-AT
64 TTATGCGAGTTACTAAT
*
57392440 AACCGGGC-AATGTCCCGAAGGCATTTG
1 -TCCGGGCTAA-GTCCCGAAGGC-TTTG
57392467 AATGAGTAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 5 0.06
79 54 0.60
80 31 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTACATCCAGACTAAGATCCGAAGGCATTT
ATGCGAGTTACTAAT
Found at i:57392431 original size:40 final size:40
Alignment explanation
Indices: 57392282--57392466 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
57392272 TCGAATGATG
* *
57392282 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
57392322 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
57392361 TTCCGGGGTAAG-CCCGAAGGCATTTGTGCGAGTTACTACA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
57392401 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
57392441 ACCGGGC-AATGTCCCGAAGGCATTTG
1 TCCGGGCTAA-GTCCCGAAGGCATTTG
57392467 AATGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 38 0.30
40 79 0.63
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:57392488 original size:79 final size:79
Alignment explanation
Indices: 57392335--57392499 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
57392325 AGACTAAGAT
* * * **
57392335 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGGTAAGCCCGAAGGCATTTGTGCGAGTTACTAC
1 CCGAAGGCATTTATGCGAGTTACTAATACCGGGGCAAGCCCGAAGGCATTTGAACGAGTTACTAC
*
57392400 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
57392414 CCGAAGGCATTTATGCGAGTTACT-ATAACC-GGGCAATGTCCCGAAGGCATTTGAATGAG-TAG
1 CCGAAGGCATTTATGCGAGTTACTAAT-ACCGGGGCAA-G-CCCGAAGGCATTTGAACGAGTTA-
* *
57392476 CTATATCC-GGTTAAATT
62 CTACATCCGGGTTAAATC
57392493 CCGAAGG
1 CCGAAGG
57392500 TACGTGATTC
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 7 0.10
79 42 0.58
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTATGCGAGTTACTAATACCGGGGCAAGCCCGAAGGCATTTGAACGAGTTACTAC
ATCCGGGTTAAATC
Found at i:57394529 original size:25 final size:25
Alignment explanation
Indices: 57394495--57394543 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
57394485 TACAGTCTAT
*
57394495 CTATAGTAGTCTCAATATATACTAC
1 CTATAGTAGTCTCAAGATATACTAC
*
57394520 CTATAGTAGTTTCAAGATATACTA
1 CTATAGTAGTCTCAAGATATACTA
57394544 TCAAAAATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (25 bp):
CTATAGTAGTCTCAAGATATACTAC
Found at i:57405550 original size:40 final size:39
Alignment explanation
Indices: 57405506--57405631 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
57405496 GGGACTCAAC
*
57405506 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
57405546 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
57405586 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
57405626 CCGGAT
1 CCGGAT
57405632 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:57405590 original size:80 final size:80
Alignment explanation
Indices: 57405445--57405631 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
57405435 GCTACACATT
* * *
57405445 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
57405509 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
57405525 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
57405588 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
57405606 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
57405632 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:57413622 original size:40 final size:39
Alignment explanation
Indices: 57413578--57413703 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
57413568 GGGACTCAAC
*
57413578 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
57413618 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
57413658 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
57413698 CCGGAT
1 CCGGAT
57413704 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:57413662 original size:80 final size:80
Alignment explanation
Indices: 57413517--57413703 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
57413507 GCTACACATT
* * *
57413517 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
57413581 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
57413597 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
57413660 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
57413678 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
57413704 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:57418323 original size:2 final size:2
Alignment explanation
Indices: 57418316--57418356 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
57418306 ATAGTTTTAG
*
57418316 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
57418357 GCATAAATCC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:57420663 original size:40 final size:40
Alignment explanation
Indices: 57420567--57420757 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
57420557 CGAATGATGT
* * * * * *
57420567 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
57420608 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
57420648 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
57420688 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
57420728 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
57420758 ATCACTATAA
Statistics
Matches: 133, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 109 0.82
41 24 0.18
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:57420718 original size:80 final size:80
Alignment explanation
Indices: 57420567--57420799 Score: 261
Period size: 80 Copynumber: 2.9 Consensus size: 80
57420557 CGAATGATGT
* * * * * *
57420567 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
57420632 GTGCGAGTTACCAAAA
65 GTGCGAGTTACCAAAA
* * *
57420648 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTCG
* *
57420713 TGCGAGTTACTAAAT
66 TGCGAGTTACCAAAA
* * * * * * * *
57420728 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAGACAATC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAA-GTCCCGAAGGCATTC
*
57420792 GAGCGAGT
65 GTGCGAGT
57420800 CGCTATATCC
Statistics
Matches: 129, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
79 2 0.02
80 101 0.78
81 26 0.20
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAAA
Found at i:57420772 original size:40 final size:39
Alignment explanation
Indices: 57420567--57420799 Score: 211
Period size: 40 Copynumber: 5.8 Consensus size: 39
57420557 CGAATGATGT
** * *
57420567 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA
* * *
57420607 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* * *
57420648 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
*
57420688 CCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTAAA
* * *
57420727 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-AA
* * *
57420768 CCGGGC-AATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAA-GTCCCGAAGGCAATTGTGCGAGT
57420800 CGCTATATCC
Statistics
Matches: 167, Mismatches: 17, Indels: 17
0.83 0.08 0.08
Matches are distributed among these distances:
39 8 0.05
40 125 0.75
41 34 0.20
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:57420781 original size:120 final size:121
Alignment explanation
Indices: 57420567--57420785 Score: 300
Period size: 120 Copynumber: 1.8 Consensus size: 121
57420557 CGAATGATGT
* * *
57420567 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * *
57420632 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
57420688 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
57420751 TGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAAG
57420786 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
119 3 0.04
120 57 0.67
121 25 0.29
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:57432536 original size:5 final size:5
Alignment explanation
Indices: 57432526--57432550 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
57432516 TATTGGGGTT
57432526 GACAG GACAG GACAG GACAG GACAG
1 GACAG GACAG GACAG GACAG GACAG
57432551 AAATGAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
GACAG
Found at i:57435219 original size:40 final size:40
Alignment explanation
Indices: 57435004--57435201 Score: 269
Period size: 40 Copynumber: 5.0 Consensus size: 40
57434994 TGGAATGATG
* *
57435004 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
57435044 TCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57435084 TCCGGACTAAGATCTGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
57435124 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57435164 TCTGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TC-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
57435202 TAACCGGGAT
Statistics
Matches: 146, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 135 0.92
41 10 0.07
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57435229 original size:40 final size:40
Alignment explanation
Indices: 57435004--57435229 Score: 207
Period size: 40 Copynumber: 5.7 Consensus size: 40
57434994 TGGAATGATG
* * *
57435004 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGCTACTAAA
* *
57435044 TCC-GGACTAAGAT-CCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
* * *
57435084 TCC-GGACTAAGAT-CTGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
*
57435124 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
*
57435164 TCTGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AA
* * *
57435205 -CCGGGATATGTCCCGGAGGTATTTG
1 TCCGGGATAAGTCCCGAAGGCATTTG
57435230 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 12, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
39 3 0.02
40 153 0.91
41 12 0.07
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTAAA
Found at i:57435243 original size:40 final size:40
Alignment explanation
Indices: 57435137--57435248 Score: 102
Period size: 40 Copynumber: 2.8 Consensus size: 40
57435127 GGACTAAGAT
** * *
57435137 CCGAAGGCATTTGTGCGAGTTACTA-AATCTGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** *
57435177 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGATATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* * *
57435217 CCGGAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
57435249 TTAAACTCCG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 2 0.03
40 58 0.94
41 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:57442323 original size:40 final size:40
Alignment explanation
Indices: 57442266--57442423 Score: 198
Period size: 40 Copynumber: 4.0 Consensus size: 40
57442256 TCGAATGATG
* *
57442266 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
57442306 TCCGGACTAAGAT-CCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57442346 TCCGGACTAAGAT-CCGAAGGCATTTGTGGGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57442386 TCCGGGA-TAAGTCCCGAAGGCATTTATGCGAGCTACTA
1 TCC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
57442424 TAACCGGGCG
Statistics
Matches: 106, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
39 1 0.01
40 95 0.90
41 10 0.09
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57445914 original size:29 final size:29
Alignment explanation
Indices: 57445882--57445954 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
57445872 CTTCGAGCTC
* *
57445882 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
57445911 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
57445940 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
57445955 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:57447183 original size:28 final size:30
Alignment explanation
Indices: 57447124--57447185 Score: 76
Period size: 28 Copynumber: 2.1 Consensus size: 30
57447114 TTTTTTTTTC
57447124 CTTTTCTTTGTTTTTCTTCATATTCTCTTT
1 CTTTTCTTTGTTTTTCTTCATATTCTCTTT
* *
57447154 CTTTT-TTT-TTTTTTTTCAT-TTCTTTATT
1 CTTTTCTTTGTTTTTCTTCATATTCTCT-TT
57447182 CTTT
1 CTTT
57447186 CTACATAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 5 0.17
28 16 0.55
29 3 0.10
30 5 0.17
ACGTcount: A:0.06, C:0.16, G:0.02, T:0.76
Consensus pattern (30 bp):
CTTTTCTTTGTTTTTCTTCATATTCTCTTT
Found at i:57464478 original size:93 final size:94
Alignment explanation
Indices: 57464357--57464618 Score: 372
Period size: 92 Copynumber: 2.8 Consensus size: 94
57464347 GTGAATGTGT
* *
57464357 TATATAGTGAT-AGG-CGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 TATAT-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
*
57464420 AATGGCCAATGTGGTGAA-ATGAACATGCA
65 AATGGCCAATGTGATGAATATGAACATGCA
*
57464449 TATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
* *
57464514 ATGGCCAATGTGATGAATGTGAGCATGCA
66 ATGGCCAATGTGATGAATATGAACATGCA
* * * * *
57464543 TATGTGTGA-AA-GCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
*
57464606 ATGGTCAATGTGA
66 ATGGCCAATGTGA
57464619 AATATATATA
Statistics
Matches: 154, Mismatches: 13, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
91 5 0.03
92 67 0.44
93 65 0.42
94 17 0.11
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (94 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATATGAACATGCA
Found at i:57464508 original size:47 final size:47
Alignment explanation
Indices: 57464336--57464618 Score: 380
Period size: 47 Copynumber: 6.1 Consensus size: 47
57464326 TTAGGATTTT
** *
57464336 ATGTGATGAATGTGAATGTG-TTATATAGTGAT-AGG-CGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATAT-GTGATAAGGCCGAATGGCCA
* *
57464381 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
57464428 ATGTGGTGAA-ATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
57464474 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
57464521 ATGTGATGAATGTGAGCATGCATATGTGTGA-AA-GCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
57464566 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
57464613 ATGTGA
1 ATGTGA
57464619 AATATATATA
Statistics
Matches: 210, Mismatches: 22, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
45 60 0.29
46 52 0.25
47 98 0.47
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:57464964 original size:36 final size:37
Alignment explanation
Indices: 57464823--57464963 Score: 214
Period size: 36 Copynumber: 3.9 Consensus size: 37
57464813 GAAATATATT
*
57464823 CGGGTGAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
57464860 CGGGTAAGACCCGATGACTACGTGTGGAGAGTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
57464897 CGGGTAAGA-CCGATGACTACGTGTGGAGATTTTGT-
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* * *
57464932 CGAGTAAGACCCGATAACTTCGTGTGGAGATT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATT
57464964 TCGTCTGAGC
Statistics
Matches: 96, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
35 8 0.08
36 44 0.46
37 44 0.46
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:57465376 original size:52 final size:52
Alignment explanation
Indices: 57465280--57465384 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
57465270 GATGAGATGT
57465280 GCATATTCGGTAAAGGATGGTATGCCCGAAGGAAGAGTGAAAATAAAAATAC
1 GCATATTCGGTAAAGGATGGTATGCCCGAAGGAAGAGTGAAAATAAAAATAC
57465332 GCATATTCGGTAAAGGGATGGTATGCCCGAAGGAAGAGTG-AAATAAAAATAC
1 GCATATTCGGTAAA-GGATGGTATGCCCGAAGGAAGAGTGAAAATAAAAATAC
57465384 G
1 G
57465385 AACAACTATG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
52 27 0.52
53 25 0.48
ACGTcount: A:0.41, C:0.11, G:0.29, T:0.19
Consensus pattern (52 bp):
GCATATTCGGTAAAGGATGGTATGCCCGAAGGAAGAGTGAAAATAAAAATAC
Found at i:57467995 original size:50 final size:50
Alignment explanation
Indices: 57467933--57468069 Score: 188
Period size: 50 Copynumber: 2.7 Consensus size: 50
57467923 TATCCATGTT
* *
57467933 TAAATACTTTGGTTTACAAAATTACCAAAATACCCT-GCTTGTAAAATTA
1 TAAATACCTTGGTTTATAAAATTACCAAAATACCCTAGCTTGTAAAATTA
*
57467982 CTAAATACCTTGGTTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTA
1 -TAAATACCTTGGTTTATAAAATTACCAAAATACCCTAGCTTGTAAAATTA
* * *
57468033 TCAAA-ACCCTAGTTTGTAAAATTACCAAAATACCCTA
1 T-AAATACCTTGGTTTATAAAATTACCAAAATACCCTA
57468070 ATTTGTGAAT
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
50 64 0.81
51 15 0.19
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (50 bp):
TAAATACCTTGGTTTATAAAATTACCAAAATACCCTAGCTTGTAAAATTA
Found at i:57468046 original size:24 final size:26
Alignment explanation
Indices: 57467950--57468146 Score: 163
Period size: 26 Copynumber: 7.7 Consensus size: 26
57467940 TTTGGTTTAC
*
57467950 AAAATTACCAAAATACCCT-GCTTGT
1 AAAATTACCAAAATACCCTAGTTTGT
* * * *
57467975 AAAATTA-CTAAATACCTTGGTTTAT
1 AAAATTACCAAAATACCCTAGTTTGT
57468000 AAAATTACCAAAATACCCTAGTTTGT
1 AAAATTACCAAAATACCCTAGTTTGT
*
57468026 AAAATTATC-AAA-ACCCTAGTTTGT
1 AAAATTACCAAAATACCCTAGTTTGT
*
57468050 AAAATTACCAAAATACCCTAATTTGT
1 AAAATTACCAAAATACCCTAGTTTGT
* ** * **
57468076 -GAATTACTGAAATA-CCTCGACCTGT
1 AAAATTACCAAAATACCCTAG-TTTGT
*** * *
57468101 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTAG-TTTGT
*
57468128 AAAATTACCAAAGTACCCT
1 AAAATTACCAAAATACCCT
57468147 CGATTTATAG
Statistics
Matches: 140, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
24 32 0.23
25 38 0.27
26 45 0.32
27 25 0.18
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAGTTTGT
Found at i:57468075 original size:50 final size:51
Alignment explanation
Indices: 57467944--57468091 Score: 187
Period size: 50 Copynumber: 2.9 Consensus size: 51
57467934 AAATACTTTG
* * * *
57467944 GTTTACAAAATTACCAAAATACCCT-GCTTGTAAAATTACTAAATACCTTG
1 GTTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTACTAAATACCCTA
57467994 GTTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTA-TCAAA-ACCCTA
1 GTTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTACT-AAATACCCTA
* * *
57468044 GTTTGTAAAATTACCAAAATACCCTAATTTGT-GAATTACTGAAATACC
1 GTTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTACT-AAATACC
57468092 TCGACCTGTA
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
49 5 0.06
50 63 0.73
51 18 0.21
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.32
Consensus pattern (51 bp):
GTTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTACTAAATACCCTA
Found at i:57468128 original size:27 final size:26
Alignment explanation
Indices: 57468077--57468135 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 26
57468067 CTAATTTGTG
57468077 AATTACTGAAATACCTCGACCTGTAA
1 AATTACTGAAATACCTCGACCTGTAA
* *
57468103 AATTATTGAAATACCCTCGACTTGTAA
1 AATTACTGAAATA-CCTCGACCTGTAA
57468130 AATTAC
1 AATTAC
57468136 CAAAGTACCC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 12 0.41
27 17 0.59
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (26 bp):
AATTACTGAAATACCTCGACCTGTAA
Found at i:57468174 original size:53 final size:52
Alignment explanation
Indices: 57468117--57468313 Score: 213
Period size: 53 Copynumber: 3.7 Consensus size: 52
57468107 ATTGAAATAC
*** *
57468117 CCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACTGTTTTA
1 CCTCGA-TTGTAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
*
57468170 CCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTA
1 CCTCGA-TTGTAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
*
57468223 CCCTC-ATT-TACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTA
1 -CCTCGATTGTA-A-AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
* *
57468276 CCCCTAATT-TACATAATTACCATTTTACCC-CAGATTTA
1 CCTC-GATTGTA-A-AATTACCATTTTACCCTC-GATTTA
57468314 CATAATTATT
Statistics
Matches: 127, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
51 2 0.02
52 6 0.05
53 87 0.69
54 32 0.25
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (52 bp):
CCTCGATTGTAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
Found at i:57468186 original size:26 final size:27
Alignment explanation
Indices: 57468141--57468335 Score: 215
Period size: 27 Copynumber: 7.4 Consensus size: 27
57468131 ATTACCAAAG
*
57468141 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
57468168 TA-CCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
57468194 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
57468221 TACCCTC-ATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTT
57468247 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
57468274 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* *
57468301 TACCC-CAGATTTACATAATTA---TTT
1 TACCCTC-GATTTATAGAATTACCGTTT
57468325 TACCCTCGATT
1 TACCCTCGATT
57468336 ACAAATTACT
Statistics
Matches: 147, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
24 12 0.08
25 1 0.01
26 47 0.32
27 87 0.59
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:57468268 original size:80 final size:81
Alignment explanation
Indices: 57468141--57468335 Score: 242
Period size: 80 Copynumber: 2.5 Consensus size: 81
57468131 ATTACCAAAG
* * * *
57468141 TACCCTCGATTTATAGAATTACTGTTTTA-CCTCGATTTGTAAAATTACCGTTTTA-CCCTCGAT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTACCGTTTTACCCCT-AAT
* *
57468204 TTATAGAATTACCGTTT
65 TTACAGAATTACCATTT
*
57468221 TACCCTC-ATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCCTAATT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTACCGTTTTACCCCTAATT
*
57468285 TACATAATTACCATTT
66 TACAGAATTACCATTT
*
57468301 TACCC-CAGATTTACATAA-T--TATTTTACCCTCGATT
1 TACCCTC-GATTTACAGAATTACTATTTTACCCTCGATT
57468336 ACAAATTACT
Statistics
Matches: 102, Mismatches: 9, Indels: 10
0.84 0.07 0.08
Matches are distributed among these distances:
78 16 0.16
79 20 0.20
80 53 0.52
81 13 0.13
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTACCGTTTTACCCCTAATT
TACAGAATTACCATTT
Found at i:57468321 original size:54 final size:53
Alignment explanation
Indices: 57468141--57468313 Score: 226
Period size: 53 Copynumber: 3.2 Consensus size: 53
57468131 ATTACCAAAG
* * * *
57468141 TACCCTCGATTTATAGAATTACTGTTTTACCTCGATTTGTA-A-AATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTTTACC-CTAATT-TACAGAATTACCATTT
* *
57468194 TACCCTCGATTTATAGAATTACCGTTTTACCCTCATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTAATTTACAGAATTACCATTT
*
57468247 TACCCTCGATTTATAGAATTACCGTTTTACCCCTAATTTACATAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTTTA-CCCTAATTTACAGAATTACCATTT
57468301 TACCC-CAGATTTA
1 TACCCTC-GATTTA
57468314 CATAATTATT
Statistics
Matches: 107, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
51 2 0.02
52 4 0.04
53 69 0.64
54 32 0.30
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (53 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTAATTTACAGAATTACCATTT
Found at i:57468350 original size:22 final size:23
Alignment explanation
Indices: 57468311--57468357 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
57468301 TACCCCAGAT
* *
57468311 TTACATAATTATTTTACCCTCGA
1 TTACATAATTACTATACCCTCGA
*
57468334 TTACA-AATTACTATACCCTTGA
1 TTACATAATTACTATACCCTCGA
57468356 TT
1 TT
57468358 TGTGTTTACC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.43
Consensus pattern (23 bp):
TTACATAATTACTATACCCTCGA
Found at i:57468366 original size:39 final size:41
Alignment explanation
Indices: 57468323--57468404 Score: 123
Period size: 39 Copynumber: 2.0 Consensus size: 41
57468313 ACATAATTAT
57468323 TTTACCCTCGATTAC-AAATTACT-ATACCCTTGATTTGTG
1 TTTACCCTCGATTACAAAATTACTAATACCCTTGATTTGTG
*
57468362 TTTACCCTCGATTACAAAATTACTAAAATACCCTTGGTTTGTG
1 TTTACCCTCGATTACAAAATTACT--AATACCCTTGATTTGTG
57468405 AAATTACCGC
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
39 15 0.39
40 8 0.21
43 15 0.39
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39
Consensus pattern (41 bp):
TTTACCCTCGATTACAAAATTACTAATACCCTTGATTTGTG
Found at i:57469649 original size:25 final size:25
Alignment explanation
Indices: 57469620--57469667 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
57469610 TTATAATATG
* * *
57469620 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
57469645 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
57469668 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:57469736 original size:20 final size:20
Alignment explanation
Indices: 57469711--57469769 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
57469701 TAAATATGGT
57469711 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
57469731 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
57469751 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
57469770 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:57469863 original size:23 final size:24
Alignment explanation
Indices: 57469819--57469984 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
57469809 GAGGAAGTGA
57469819 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57469843 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57469866 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57469890 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
57469913 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
57469937 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
57469961 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
57469985 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.35
24 76 0.57
25 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:57469888 original size:47 final size:47
Alignment explanation
Indices: 57469819--57469984 Score: 246
Period size: 47 Copynumber: 3.5 Consensus size: 47
57469809 GAGGAAGTGA
57469819 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
57469865 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
** *
57469913 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
*
57469961 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
57469985 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
47 80 0.72
48 20 0.18
49 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:57469935 original size:71 final size:70
Alignment explanation
Indices: 57469819--57469985 Score: 246
Period size: 71 Copynumber: 2.3 Consensus size: 70
57469809 GAGGAAGTGA
57469819 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCA
57469884 GTTATC
65 GTTATC
** *
57469890 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCA
*
57469955 GTTATT
65 GTTATC
*
57469961 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
57469986 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
70 13 0.15
71 63 0.72
72 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCAG
TTATC
Found at i:57470211 original size:31 final size:31
Alignment explanation
Indices: 57470176--57470239 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
57470166 CGTTTACAGT
57470176 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
57470207 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
57470238 AA
1 AA
57470240 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:57473202 original size:80 final size:79
Alignment explanation
Indices: 57473042--57473262 Score: 212
Period size: 80 Copynumber: 2.7 Consensus size: 79
57473032 TTTGGTTTAC
* * **
57473042 AAATTACCAAAATACCCTGCTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAA
1 AAATTATCAAAATACCCTGATTTGTAAAATTACTAAAATACCC-TAATTTATAAAATTACCAAAA
* **
57473107 TACCCCTAGTTTGTA
65 TACCCCGAGCCTGTA
* * * **
57473122 AAATTATCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCTAATTTGTGAAATTACTGAA
1 AAATTATCAAAATA-CCCTGA-TTTGTAAAATTACTAAAATACCCTAATTTATAAAATTACCAAA
57473186 ATACCCTCGA-CCTGTA
64 ATACCC-CGAGCCTGTA
** * * * *
57473202 AAATTATTGAAATACCCTCGACTTGTAAAATTACTAAAGTACCCTCGATTTATAGAATTAC
1 AAATTATCAAAATACCCT-GATTTGTAAAATTACTAAAATACCCT-AATTTATAAAATTAC
57473263 GTTTACCCTC
Statistics
Matches: 114, Mismatches: 21, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
79 4 0.04
80 70 0.61
81 40 0.35
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (79 bp):
AAATTATCAAAATACCCTGATTTGTAAAATTACTAAAATACCCTAATTTATAAAATTACCAAAAT
ACCCCGAGCCTGTA
Found at i:57473228 original size:107 final size:107
Alignment explanation
Indices: 57473042--57473234 Score: 244
Period size: 107 Copynumber: 1.8 Consensus size: 107
57473032 TTTGGTTTAC
** * ***
57473042 AAATTACCAAAATACCCTGCTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAA
1 AAATTACCAAAATACCCTAATTTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCAAAA
* *
57473107 TACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTA
66 TACCCCGAGCTTGTAAAATTATCAAAATACCCCTAGTTTGTA
* * * ***
57473149 AAATTACCAAAATACCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAA
1 AAATTACCAAAATACCCTAATTTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCAAAA
57473214 TACCCTCGA-CTTGTAAAATTA
66 TACCC-CGAGCTTGTAAAATTA
57473235 CTAAAGTACC
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
107 69 0.97
108 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (107 bp):
AAATTACCAAAATACCCTAATTTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCAAAA
TACCCCGAGCTTGTAAAATTATCAAAATACCCCTAGTTTGTA
Found at i:57473247 original size:27 final size:27
Alignment explanation
Indices: 57473042--57473286 Score: 202
Period size: 27 Copynumber: 9.3 Consensus size: 27
57473032 TTTGGTTTAC
* *
57473042 AAATTACCAAAATACCCT-GCTTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * *
57473068 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
57473095 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACTAAAATACCCTCGA-TTTGTA
*
57473122 AAATTA-TCAAAATACCC-CTAGTTTGTA
1 AAATTACT-AAAATACCCTCGA-TTTGTA
* * *
57473149 AAATTACCAAAATACCCT-AATTTGTG
1 AAATTACTAAAATACCCTCGATTTGTA
* **
57473175 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * *
57473202 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
57473229 AAATTACTAAAGTACCCTCGATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
57473256 GAATTACGT---TTACCCTCGATTT-TA
1 AAATTAC-TAAAATACCCTCGATTTGTA
57473280 AAATTAC
1 AAATTAC
57473287 CGTTTTACCC
Statistics
Matches: 184, Mismatches: 28, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
24 8 0.04
25 12 0.07
26 38 0.21
27 125 0.68
28 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:57473261 original size:107 final size:107
Alignment explanation
Indices: 57473042--57473262 Score: 232
Period size: 107 Copynumber: 2.1 Consensus size: 107
57473032 TTTGGTTTAC
** * ***
57473042 AAATTACCAAAATACCCTGCTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAA
1 AAATTACCAAAATACCCTAATTTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCAAAA
* * * *
57473107 TACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTA
66 TACCCCGAGCTTGTAAAATTATCAAAATACCCCGAGTTTATA
* * * ***
57473149 AAATTACCAAAATACCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAA
1 AAATTACCAAAATACCCTAATTTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCAAAA
*
57473214 TACCCTCGA-CTTGTAAAATTA-CTAAAGTACCCTCGA-TTTATA
66 TACCC-CGAGCTTGTAAAATTATC-AAAATACCC-CGAGTTTATA
*
57473256 GAATTAC
1 AAATTAC
57473263 GTTTACCCTC
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
106 1 0.01
107 88 0.95
108 4 0.04
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (107 bp):
AAATTACCAAAATACCCTAATTTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCAAAA
TACCCCGAGCTTGTAAAATTATCAAAATACCCCGAGTTTATA
Done.