Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 195 of 378
Found at i:57473293 original size:26 final size:27
Alignment explanation
Indices: 57473241--57473443 Score: 226
Period size: 26 Copynumber: 7.8 Consensus size: 27
57473231 ATTACTAAAG
*
57473241 TACCCTCGATTTATAGAATTA-CG-TT
1 TACCCTCGATTTATAAAATTACCGTTT
57473266 TACCCTCGATTT-TAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
57473292 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * **
57473319 TACCCTC-ATTTACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
57473345 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
57473372 TACCCT--ATTTA-CAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
57473396 TACCC-CAGATTTA-CAAATTACTGTTT
1 TACCCTC-GATTTATAAAATTACCGTTT
*
57473422 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAAAATTAC
57473444 TAAAATACCC
Statistics
Matches: 155, Mismatches: 14, Indels: 16
0.84 0.08 0.09
Matches are distributed among these distances:
24 22 0.14
25 19 0.12
26 64 0.41
27 50 0.32
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGTTT
Found at i:57473346 original size:53 final size:53
Alignment explanation
Indices: 57473241--57473443 Score: 278
Period size: 53 Copynumber: 3.9 Consensus size: 53
57473231 ATTACTAAAG
*
57473241 TACCCTCGATTTATAGAATTA-CG-TTTACCCTCGATTTTA-AAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGA-TTTACAAATTACCATTT
*
57473292 TACCCTCGATTTATAGAATTACCGTTTTACCCTC-ATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACA-AATTACCATTT
57473345 TACCCTCGATTTATAGAATTACCGTTTTACCCT--ATTTACAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAATTACCATTT
* *
57473396 TACCC-CAGATTTACA-AATTACTGTTTTACCCTCGATTTACAAAATTAC
1 TACCCTC-GATTTATAGAATTACCGTTTTACCCTCGATTTAC-AAATTAC
57473444 TAAAATACCC
Statistics
Matches: 139, Mismatches: 5, Indels: 14
0.88 0.03 0.09
Matches are distributed among these distances:
50 17 0.12
51 47 0.34
52 17 0.12
53 58 0.42
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (53 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAATTACCATTT
Found at i:57473453 original size:77 final size:77
Alignment explanation
Indices: 57473241--57473454 Score: 186
Period size: 77 Copynumber: 2.8 Consensus size: 77
57473231 ATTACTAAAG
* * * ****
57473241 TACCCTCGATTTATAGAATTAC--GTTTACCCTCGATTT-TAAAATTACCGTTTTACCCTCGATT
1 TACCCTC-ATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCAAAATACCCT--ATT
* *
57473303 TATAGAATTACCGTTT
63 TACA-AATTACCATTT
* * ****
57473319 TACCCTCATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTATTTAC
1 TACCCTCATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCAAAATACCCTATTTAC
57473384 AAATTACCATTT
66 AAATTACCATTT
* *
57473396 TACCC-CAGATTTACA-AATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCT
1 TACCCTC--ATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCAAAATACCCT
57473455 TGGTTTGTGA
Statistics
Matches: 118, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
76 1 0.01
77 64 0.54
78 20 0.17
79 14 0.12
80 19 0.16
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (77 bp):
TACCCTCATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCAAAATACCCTATTTAC
AAATTACCATTT
Found at i:57473472 original size:104 final size:105
Alignment explanation
Indices: 57473214--57473454 Score: 305
Period size: 104 Copynumber: 2.3 Consensus size: 105
57473204 ATTATTGAAA
* ** *
57473214 TACCCTCGACTTGTAAAATTACTAAAGTACCCTCGATTTATAGAATTA-CGTTTACCCTCGATTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTATAGAATTACCGTTTACCCTC-ATTT
* *
57473278 TAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTT
65 TAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* ***
57473319 TACCCTC-ATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCT-A-TT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTATAGAATTACCG-TTTACCCTCATTT
*
57473381 TACAAATTACCATTTTACCC-CAGATTTACA-AATTACTGTTT
65 TA-AAATTACCATTTTACCCTC-GATTTACAGAATTACCGTTT
57473422 TACCCTCGATTTACAAAATTACTAAAATACCCT
1 TACCCTCGATTTACAAAATTACTAAAATACCCT
57473455 TGGTTTGTGA
Statistics
Matches: 117, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
103 22 0.19
104 78 0.67
105 9 0.08
106 8 0.07
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.38
Consensus pattern (105 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTATAGAATTACCGTTTACCCTCATTTT
AAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:57473480 original size:104 final size:103
Alignment explanation
Indices: 57473228--57473481 Score: 266
Period size: 104 Copynumber: 2.4 Consensus size: 103
57473218 CTCGACTTGT
* ** *
57473228 AAAATTACTAAAGTACCCTCGATTTATAGAATTA-CG-TTTACCCTCGATTTTAAAATTACCGTT
1 AAAATTACTAAAATACCCTCGATTTATAGAATTACCGCAATACCCT--A-TTTAAAATTACCATT
*
57473291 TTACCCTCGATTTATAGAATTACCGTTTTACCCTCATTTAC
63 TTACCCTCGATTTACAGAATTACCGTTTTACCCTCATTTAC
* *** ***
57473332 AGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTATTTACAAATTACCATTTT
1 AAAATTACTAAAATACCCTCGATTTATAGAATTACCGCAATACCCTATTTA-AAATTACCATTTT
*
57473397 ACCC-CAGATTTACA-AATTACTGTTTTACCCTCGATTTAC
65 ACCCTC-GATTTACAGAATTACCGTTTTACCCTC-ATTTAC
* * *
57473436 AAAATTACTAAAATACCCTTGGTTTGT-GAAATTACCGCAATACCCT
1 AAAATTACTAAAATACCCTCGATTTATAG-AATTACCGCAATACCCT
57473482 CAATTTGTAA
Statistics
Matches: 127, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
103 23 0.18
104 94 0.74
105 2 0.02
106 8 0.06
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.38
Consensus pattern (103 bp):
AAAATTACTAAAATACCCTCGATTTATAGAATTACCGCAATACCCTATTTAAAATTACCATTTTA
CCCTCGATTTACAGAATTACCGTTTTACCCTCATTTAC
Found at i:57474707 original size:25 final size:25
Alignment explanation
Indices: 57474678--57474725 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
57474668 TTATAATATG
* * *
57474678 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
57474703 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
57474726 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:57474794 original size:20 final size:20
Alignment explanation
Indices: 57474769--57474827 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
57474759 TAAATATGGT
57474769 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
57474789 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
57474809 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
57474828 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:57474905 original size:24 final size:24
Alignment explanation
Indices: 57474878--57475044 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
57474868 GAGGAAGTGA
57474878 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57474902 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57474926 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57474950 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
57474973 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
57474997 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
57475021 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
57475045 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 101 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:57474995 original size:71 final size:71
Alignment explanation
Indices: 57474878--57475045 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
57474868 GAGGAAGTGA
57474878 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
57474943 AGTTATC
65 AGTTATC
** *
57474950 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
57475015 GTTATT
66 GTTATC
*
57475021 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
57475046 TGATAAAGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 54 0.61
72 35 0.39
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:57475271 original size:31 final size:31
Alignment explanation
Indices: 57475236--57475299 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
57475226 CGTTTACAGT
57475236 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
57475267 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
57475298 AA
1 AA
57475300 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:57478159 original size:27 final size:27
Alignment explanation
Indices: 57478075--57478225 Score: 191
Period size: 27 Copynumber: 5.7 Consensus size: 27
57478065 TTTGGTTTAC
57478075 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * *
57478101 AAAATTACTAAAATA-CCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
57478127 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
57478154 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
57478181 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
57478208 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
57478226 TCGACCTGTA
Statistics
Matches: 110, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
26 35 0.32
27 75 0.68
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:57478239 original size:27 final size:27
Alignment explanation
Indices: 57478209--57478269 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
57478199 CTAATTTGTG
57478209 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
57478236 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
57478263 AAATTAC
1 AAATTAC
57478270 CAGTACCCTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:57478292 original size:25 final size:24
Alignment explanation
Indices: 57478248--57478400 Score: 84
Period size: 25 Copynumber: 6.0 Consensus size: 24
57478238 ATTATTGAAA
* * *
57478248 TACCCTCGACTTGTAAAATTACCAG
1 TACCCTCGATTTATAGAATTACC-G
57478273 TACCCTCGATTTATAGAATTA-CG
1 TACCCTCGATTTATAGAATTACCG
57478296 TTTTACCCTCGATTTA-A-AATTACCG
1 ---TACCCTCGATTTATAGAATTACCG
57478321 TTTTACCCTCGA-TT-TAGAATTACCG
1 ---TACCCTCGATTTATAGAATTACCG
* **
57478346 TTTTACCCTC-AGTTTACAGAATTACTATTT
1 ---TACCCTCGA-TTTATAGAATTAC---CG
57478376 TACCCTCGATTTATAGAATTACCG
1 TACCCTCGATTTATAGAATTACCG
57478400 T
1 T
57478401 TTTACCCTAA
Statistics
Matches: 106, Mismatches: 9, Indels: 27
0.75 0.06 0.19
Matches are distributed among these distances:
23 1 0.01
24 11 0.10
25 51 0.48
26 15 0.14
27 27 0.25
28 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (24 bp):
TACCCTCGATTTATAGAATTACCG
Found at i:57478306 original size:26 final size:27
Alignment explanation
Indices: 57478273--57478474 Score: 244
Period size: 25 Copynumber: 7.8 Consensus size: 27
57478263 AAATTACCAG
*
57478273 TACCCTCGATTTATAGAATTA-CGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
57478299 TACCCTCGATTTA-A-AATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
57478324 TACCCTCGATTT--AGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
57478349 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
57478376 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
57478403 TACCCT-AATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
57478429 TA-CC-CGATTTACA-AATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
57478453 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
57478475 TAAAATACCC
Statistics
Matches: 154, Mismatches: 12, Indels: 19
0.83 0.06 0.10
Matches are distributed among these distances:
24 18 0.12
25 50 0.32
26 40 0.26
27 45 0.29
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:57478328 original size:51 final size:52
Alignment explanation
Indices: 57478248--57478474 Score: 249
Period size: 51 Copynumber: 4.4 Consensus size: 52
57478238 ATTATTGAAA
*
57478248 TACCCTCGACTTGTAAAATTACCA--GTACCCTCGATTTATAGAATTA-CGTTT
1 TACCCTCGA-TT-TAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
*
57478299 TACCCTCGATTTAAAATTACCGTTTTACCCTCGA-TT-TAGAATTACCGTTT
1 TACCCTCGATTTAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
*
57478349 TACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGA-TTTA-A-AATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
* * *
57478403 TACCCT-AATTTACATAATTACCATTTTA-CC-CGATTTACA-AATTACTGTTT
1 TACCCTCGATTTA-A-AATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
57478453 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTT--AAAATTAC
57478475 TAAAATACCC
Statistics
Matches: 155, Mismatches: 9, Indels: 24
0.82 0.05 0.13
Matches are distributed among these distances:
49 19 0.12
50 36 0.23
51 37 0.24
52 21 0.14
53 21 0.14
54 21 0.14
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (52 bp):
TACCCTCGATTTAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
Found at i:57478446 original size:77 final size:75
Alignment explanation
Indices: 57478279--57478474 Score: 245
Period size: 77 Copynumber: 2.5 Consensus size: 75
57478269 CCAGTACCCT
* *
57478279 CGATTTATAGAATTAC-GTTTTACCCTCGATTTAAAATTACCGTTTTACCCTCGATTTAGAATTA
1 CGATTTACAGAATTACTGTTTTACCCTCGATTTAAAATTACCGTTTTACCCTCAATTTAGAATTA
*
57478343 CCGTTTTACC
66 CCATTTTACC
* *
57478353 CTCAGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCT-AATTTACA
1 C-GA-TTTACAGAATTACTGTTTTACCCTCGATTTA-A-AATTACCGTTTTACCCTCAATTT--A
*
57478417 TAATTACCATTTTACC
60 GAATTACCATTTTACC
57478433 CGATTTACA-AATTACTGTTTTACCCTCGATTTACAAAATTAC
1 CGATTTACAGAATTACTGTTTTACCCTCGATTT--AAAATTAC
57478475 TAAAATACCC
Statistics
Matches: 105, Mismatches: 8, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
74 1 0.01
75 1 0.01
76 12 0.11
77 44 0.42
78 12 0.11
79 19 0.18
80 16 0.15
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (75 bp):
CGATTTACAGAATTACTGTTTTACCCTCGATTTAAAATTACCGTTTTACCCTCAATTTAGAATTA
CCATTTTACC
Found at i:57478503 original size:104 final size:104
Alignment explanation
Indices: 57478273--57478485 Score: 283
Period size: 104 Copynumber: 2.1 Consensus size: 104
57478263 AAATTACCAG
* *
57478273 TACCCTCGATTTATAGAATTA-CGTTTTACCCTCGATTTAAAATTACCGTTTTACCCTCGATTTA
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTAAAATTACCATTTTACCCTCGATTTA
* * ***
57478337 GAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTT
66 AAATTACCGTTTTACCCTCAGTTTACAAAATTACTAAAA
57478376 TACCCTCGATTTATAGAATTACCGTTTTACCCT-AATTTACATAATTACCATTTTA-CC-CGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTA-A-AATTACCATTTTACCCTCGATT
*
57478438 TACAAATTACTGTTTTACCCTC-GATTTACAAAATTACTAAAA
64 TA-AAATTACCGTTTTACCCTCAG-TTTACAAAATTACTAAAA
57478480 TACCCT
1 TACCCT
57478486 TGGTTTGTGA
Statistics
Matches: 97, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
103 34 0.35
104 51 0.53
105 12 0.12
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (104 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTAAAATTACCATTTTACCCTCGATTTA
AAATTACCGTTTTACCCTCAGTTTACAAAATTACTAAAA
Found at i:57478511 original size:104 final size:106
Alignment explanation
Indices: 57478273--57478518 Score: 256
Period size: 104 Copynumber: 2.4 Consensus size: 106
57478263 AAATTACCAG
*** * *
57478273 TACCCTCGATTTATAGAATTA-CGTTTTACCCTCGATTTA-A-AATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGCAATACCCTCAATTTACATAATTACCATTTTACCCTCGATT
* * ***
57478335 TAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTT
66 TAAAATTACCGTTTTACCCTCAGTTTACAAAATTACTAAAA
***
57478376 TACCCTCGATTTATAGAATTACCGTTTTACCCT-AATTTACATAATTACCATTTTA-CC-CGATT
1 TACCCTCGATTTATAGAATTACCGCAATACCCTCAATTTACATAATTACCATTTTACCCTCGATT
*
57478438 TACAAATTACTGTTTTACCCTC-GATTTACAAAATTACTAAAA
66 TA-AAATTACCGTTTTACCCTCAG-TTTACAAAATTACTAAAA
* * *
57478480 TACCCTTGGTTTGT-GAAATTACCGCAATACCCTCAATTT
1 TACCCTCGATTTATAG-AATTACCGCAATACCCTCAATTT
57478519 GTAAAACTAC
Statistics
Matches: 122, Mismatches: 14, Indels: 12
0.82 0.09 0.08
Matches are distributed among these distances:
103 35 0.29
104 70 0.57
105 17 0.14
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (106 bp):
TACCCTCGATTTATAGAATTACCGCAATACCCTCAATTTACATAATTACCATTTTACCCTCGATT
TAAAATTACCGTTTTACCCTCAGTTTACAAAATTACTAAAA
Found at i:57479738 original size:25 final size:25
Alignment explanation
Indices: 57479709--57479756 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
57479699 TTATAATATG
* * *
57479709 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
57479734 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
57479757 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:57479825 original size:20 final size:20
Alignment explanation
Indices: 57479800--57479858 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
57479790 TAAATATGGT
57479800 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
57479820 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
57479840 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
57479859 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:57479936 original size:24 final size:24
Alignment explanation
Indices: 57479909--57480075 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
57479899 GAGGAAGTGA
57479909 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57479933 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57479957 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57479981 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
57480004 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
57480028 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
57480052 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
57480076 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 101 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:57480026 original size:71 final size:71
Alignment explanation
Indices: 57479909--57480076 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
57479899 GAGGAAGTGA
57479909 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
57479974 AGTTATC
65 AGTTATC
** *
57479981 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
57480046 GTTATT
66 GTTATC
*
57480052 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
57480077 TGATAAAGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 54 0.61
72 35 0.39
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:57480302 original size:31 final size:31
Alignment explanation
Indices: 57480267--57480330 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
57480257 CGTTTACAGT
57480267 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
57480298 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
57480329 AA
1 AA
57480331 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:57483217 original size:27 final size:27
Alignment explanation
Indices: 57483134--57483283 Score: 191
Period size: 27 Copynumber: 5.7 Consensus size: 27
57483124 TTTGGTTTAC
57483134 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * *
57483160 AAAATTACTAAAATA--CCTTGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
57483185 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
57483212 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
57483239 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
57483266 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
57483284 TCGACCTGTA
Statistics
Matches: 110, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
25 21 0.19
26 15 0.14
27 74 0.67
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:57483294 original size:54 final size:54
Alignment explanation
Indices: 57483134--57483354 Score: 202
Period size: 54 Copynumber: 4.1 Consensus size: 54
57483124 TTTGGTTTAC
** * *
57483134 AAAATTACCAAAATA-CCCTGCTTTGTAAAATTACTAAAATA-CCTTG-TTTAT
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGATTTGT
* *
57483185 AAAATTACCAAAATACCCCTAGTTTGTAAAATTA-TCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTACT-AAAATACCCTCGA-TTTGT
* * **
57483239 AAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGATTTGT
*** * * * * *
57483293 AAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTAT
1 AAAATTACCAAAATACCCCT-AATTTGTAAAATTACTAAAATACCCTCGATTTGT
*
57483347 AGAATTAC
1 AAAATTAC
57483355 GTTTTACCCT
Statistics
Matches: 137, Mismatches: 25, Indels: 13
0.78 0.14 0.07
Matches are distributed among these distances:
51 16 0.12
52 22 0.16
53 6 0.04
54 90 0.66
55 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGATTTGT
Found at i:57483297 original size:27 final size:27
Alignment explanation
Indices: 57483267--57483341 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
57483257 CTAATTTGTG
57483267 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
57483294 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
57483321 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
57483342 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:57483368 original size:26 final size:27
Alignment explanation
Indices: 57483333--57483537 Score: 246
Period size: 26 Copynumber: 7.8 Consensus size: 27
57483323 ATTACCAAAG
*
57483333 TACCCTCGATTTATAGAATTA-CGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
57483359 TACCCTCGATTTTA-A-AATTACCGTTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
57483385 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
57483412 TACCCTC-ATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
57483438 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
57483465 TACCCT-AATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
57483491 TACCC-CAGATTTACA-AATTA-TGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
57483516 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
57483538 TAAAATACCC
Statistics
Matches: 156, Mismatches: 13, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
25 25 0.16
26 80 0.51
27 51 0.33
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:57483413 original size:53 final size:52
Alignment explanation
Indices: 57483306--57483537 Score: 251
Period size: 53 Copynumber: 4.4 Consensus size: 52
57483296 ATTATTGAAA
* ***
57483306 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACGTTT
1 TACCCTCGA-TTTTAAAATTACCATTTTACCCTCGATTTATAGAATTACGTTT
*
57483359 TACCCTCGATTTTAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTTAAAATTACCATTTTACCCTCGATTTATAGAATTA-CGTTT
*
57483412 TACCCTC-A-TTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTTA-A-AATTACCATTTTACCCTCGATTTATAGAATTA-CGTTT
* * *
57483465 TACCCT--AATTTACATAATTACCATTTTACCC-CAGATTTACA-AATTATGTTT
1 TACCCTCGATTTTA-A-AATTACCATTTTACCCTC-GATTTATAGAATTACGTTT
*
57483516 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTT-TAAAATTAC
57483538 TAAAATACCC
Statistics
Matches: 158, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
51 14 0.09
52 48 0.30
53 95 0.60
54 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (52 bp):
TACCCTCGATTTTAAAATTACCATTTTACCCTCGATTTATAGAATTACGTTT
Found at i:57484752 original size:25 final size:25
Alignment explanation
Indices: 57484723--57484770 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
57484713 TTATAATATG
* * *
57484723 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
57484748 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
57484771 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:57484839 original size:20 final size:20
Alignment explanation
Indices: 57484814--57484872 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
57484804 TAAATATGGT
57484814 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
57484834 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
57484854 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
57484873 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:57484950 original size:24 final size:24
Alignment explanation
Indices: 57484923--57485089 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
57484913 GAGGAAGTGA
57484923 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57484947 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57484971 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57484995 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
57485018 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
57485042 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
57485066 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
57485090 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 101 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:57485040 original size:71 final size:71
Alignment explanation
Indices: 57484923--57485090 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
57484913 GAGGAAGTGA
57484923 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
57484988 AGTTATC
65 AGTTATC
** *
57484995 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
57485060 GTTATT
66 GTTATC
*
57485066 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
57485091 TGATAAAGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 54 0.61
72 35 0.39
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:57485316 original size:31 final size:31
Alignment explanation
Indices: 57485281--57485344 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
57485271 CGTTTACAGT
57485281 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
57485312 AAAGGCTTCGGCCTAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
57485343 AA
1 AA
57485345 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:57489967 original size:43 final size:43
Alignment explanation
Indices: 57489899--57489986 Score: 144
Period size: 43 Copynumber: 2.0 Consensus size: 43
57489889 TGGGCGAGGG
57489899 ACACGGGCGTGTGCTTTATCCCCACACAGGCGTGT-AAGGCATA
1 ACACGGGCGTGTGCTTTATCCCCACACAGGCGTGTGAA-GCATA
57489942 ACACGGGCGTGTGCTTTA-CCTCCACACAGGCGTGTGAAGCATA
1 ACACGGGCGTGTGCTTTATCC-CCACACAGGCGTGTGAAGCATA
57489985 AC
1 AC
57489987 CCTAGAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
42 2 0.05
43 39 0.91
44 2 0.05
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (43 bp):
ACACGGGCGTGTGCTTTATCCCCACACAGGCGTGTGAAGCATA
Found at i:57500271 original size:24 final size:24
Alignment explanation
Indices: 57500244--57500330 Score: 131
Period size: 24 Copynumber: 3.6 Consensus size: 24
57500234 CTTATTATGT
*
57500244 TCGCACACATAGTGCCATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
57500268 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
57500292 TCGCACACATAGTG-CATTAATAAA
1 TCGCACACATAGTGCCA-TAGTAAA
*
57500316 TTGCACACATAGTGC
1 TCGCACACATAGTGC
57500331 ATTTGAGATA
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
23 2 0.03
24 56 0.97
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:57500331 original size:24 final size:24
Alignment explanation
Indices: 57500222--57500333 Score: 122
Period size: 24 Copynumber: 4.7 Consensus size: 24
57500212 ACCGAATGTG
* **
57500222 GCACACATAGTGC-TTATTATGTTC
1 GCACACATAGTGCATTAGTA-AATC
*
57500246 GCACACATAGTGCCA-TAGCAAATC
1 GCACACATAGTG-CATTAGTAAATC
57500270 GCACACATAGTGCCA-TAGTAAATC
1 GCACACATAGTG-CATTAGTAAATC
* *
57500294 GCACACATAGTGCATTAATAAATT
1 GCACACATAGTGCATTAGTAAATC
57500318 GCACACATAGTGCATT
1 GCACACATAGTGCATT
57500334 TGAGATAGCC
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
23 2 0.03
24 72 0.92
25 4 0.05
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (24 bp):
GCACACATAGTGCATTAGTAAATC
Found at i:57502996 original size:16 final size:18
Alignment explanation
Indices: 57502975--57503013 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
57502965 TAGTCATTTG
*
57502975 TTTATTTCA-TTGTTT-A
1 TTTATTTCAGTTATTTAA
57502991 TTTATTTCAGTTATTTAA
1 TTTATTTCAGTTATTTAA
57503009 TTTAT
1 TTTAT
57503014 AATTCTCATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 9 0.45
17 5 0.25
18 6 0.30
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (18 bp):
TTTATTTCAGTTATTTAA
Found at i:57506658 original size:40 final size:40
Alignment explanation
Indices: 57506614--57506794 Score: 229
Period size: 40 Copynumber: 4.5 Consensus size: 40
57506604 CAAGCACATT
* * *** *
57506614 TGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
*
57506654 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
*
57506694 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
* * * *
57506734 TGTCTTCGGGTCTTAGCCCGGATATGATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATAT-AACAACTCGCACAAA
*
57506774 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
57506795 GTATCATTCA
Statistics
Matches: 126, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 124 0.98
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
Found at i:57509741 original size:8 final size:8
Alignment explanation
Indices: 57509728--57509761 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
57509718 GATTGTTTCT
57509728 AAATGGTA
1 AAATGGTA
57509736 AAATGGTA
1 AAATGGTA
57509744 AAATGGTA
1 AAATGGTA
57509752 AAATGGTA
1 AAATGGTA
57509760 AA
1 AA
57509762 TAAAGATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAATGGTA
Found at i:57514653 original size:20 final size:20
Alignment explanation
Indices: 57514624--57514669 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
57514614 GAACCATTCA
*
57514624 AAATCATTAAGGATACTTTT
1 AAATCATTAAGGATACTTTG
*
57514644 AAATCGTTAAGGATACTTTG
1 AAATCATTAAGGATACTTTG
57514664 AAATCA
1 AAATCA
57514670 CATAAACTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (20 bp):
AAATCATTAAGGATACTTTG
Found at i:57514750 original size:43 final size:43
Alignment explanation
Indices: 57514684--57514856 Score: 181
Period size: 43 Copynumber: 4.0 Consensus size: 43
57514674 AACTCATACA
* * * ** *
57514684 ATGCC-ATATCCCAGATATTGTCTTACATTTGATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * *
57514726 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAATAAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT-ATCG
* *
57514769 ATGCCAATGTCCCAAACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* *
57514812 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
57514855 AT
1 AT
57514857 AACCTAATGT
Statistics
Matches: 106, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
43 96 0.91
44 3 0.03
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:57515572 original size:17 final size:17
Alignment explanation
Indices: 57515540--57515572 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
57515530 TAAAGCAACG
57515540 ATCACAAAAACGTAAAA
1 ATCACAAAAACGTAAAA
57515557 ATCATCAAAAAC-TAAA
1 ATCA-CAAAAACGTAAA
57515573 CACAAAACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.64, C:0.18, G:0.03, T:0.15
Consensus pattern (17 bp):
ATCACAAAAACGTAAAA
Found at i:57523470 original size:17 final size:19
Alignment explanation
Indices: 57523432--57523475 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
57523422 CAACGGTTGG
*
57523432 CTAAAAAT-ATGGTTTTTA
1 CTAAAAATAAAGGTTTTTA
57523450 CTAAAAATAAAGG-TTTT-
1 CTAAAAATAAAGGTTTTTA
57523467 CTAAAAATA
1 CTAAAAATA
57523476 CGAACGGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 9 0.38
18 12 0.50
19 3 0.12
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (19 bp):
CTAAAAATAAAGGTTTTTA
Found at i:57527938 original size:17 final size:17
Alignment explanation
Indices: 57527916--57527956 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
57527906 TAATTACTCG
57527916 TTCAATATTCACAACAA
1 TTCAATATTCACAACAA
57527933 TTCAATATTCACAACAA
1 TTCAATATTCACAACAA
*
57527950 CTCAATA
1 TTCAATA
57527957 ACAATTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.29
Consensus pattern (17 bp):
TTCAATATTCACAACAA
Found at i:57528779 original size:31 final size:31
Alignment explanation
Indices: 57528728--57528904 Score: 311
Period size: 31 Copynumber: 5.7 Consensus size: 31
57528718 TTATTCTTGA
* *
57528728 CATAT-ACTGGGCCAAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
57528758 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
57528789 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
57528820 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
57528851 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
57528882 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
57528905 ACTGTAAACG
Statistics
Matches: 140, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.04
31 135 0.96
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:57528975 original size:42 final size:42
Alignment explanation
Indices: 57528928--57529103 Score: 307
Period size: 42 Copynumber: 4.2 Consensus size: 42
57528918 TGGCCCTTAG
*
57528928 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
57528970 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
57529012 GCCCATTTCAATATCACATGTAATGTCATTGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
57529054 GCCAATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
57529096 GCCTATTT
1 GCCCATTT
57529104 GGGGAGACTA
Statistics
Matches: 129, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 129 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:57529284 original size:25 final size:25
Alignment explanation
Indices: 57529251--57529320 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
57529241 CTCTTTTAAT
57529251 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTAGGGCAAAGCCCTTTTC-GATA
* * *
57529276 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
57529301 AACTAGGGCAGAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
57529321 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 34 0.89
26 4 0.11
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:57530296 original size:27 final size:27
Alignment explanation
Indices: 57530248--57530333 Score: 86
Period size: 29 Copynumber: 3.1 Consensus size: 27
57530238 GTAAATCTAC
*
57530248 AAACCAAGGGTA-TTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTTA-TAATTTTGT
*
57530275 AAACCAATGGTATTTTTATAATTTT-T
1 AAACCAAGGGTATTTTTATAATTTTGT
**
57530301 AGAAAGTTAAGGGTATTTTTATAATTTTGT
1 --AAA-CCAAGGGTATTTTTATAATTTTGT
57530331 AAA
1 AAA
57530334 TTAGGGGTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.02
27 18 0.37
28 10 0.20
29 19 0.39
30 1 0.02
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.43
Consensus pattern (27 bp):
AAACCAAGGGTATTTTTATAATTTTGT
Found at i:57530352 original size:27 final size:27
Alignment explanation
Indices: 57530311--57530461 Score: 194
Period size: 27 Copynumber: 5.6 Consensus size: 27
57530301 AGAAAGTTAA
** ** *
57530311 GGGTATTTTTATAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
57530338 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
57530365 GGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
57530392 TGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
57530419 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
57530446 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
57530462 CTATCCTACA
Statistics
Matches: 109, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 109 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:57530397 original size:54 final size:54
Alignment explanation
Indices: 57530228--57530461 Score: 207
Period size: 54 Copynumber: 4.3 Consensus size: 54
57530218 CATCTTACAA
* * * * * ** *
57530228 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTACAAACCAG
* ** * * *** ** **
57530282 TGGTATTTTTATAATTTTTAGAAAGTTAAGGGTATTTTTATAATTTTGTAAATTAG
1 GGGTATTTTGGTAA-TTTTACAAA-CTAAGGGTATTTCGGTAATTTTACAAACCAG
* *
57530338 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTACAAACCAG
* * * * *
57530392 TGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTACAAACCAG
57530446 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
57530462 CTATCCTACA
Statistics
Matches: 142, Mismatches: 36, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
54 94 0.66
55 14 0.10
56 34 0.24
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTACAAACCAG
Found at i:57530476 original size:27 final size:27
Alignment explanation
Indices: 57530226--57530488 Score: 154
Period size: 27 Copynumber: 9.7 Consensus size: 27
57530216 TTCATCTTAC
* * *
57530226 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTCTACAAACT
** * ** *
57530253 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTCTACAAACT
* ** * * *
57530280 AATGGTATTTTTATAATTTTTAGAAAGTT
1 AAGGGTATTTTGGTAA-TTCTACAAA-CT
** * ** *
57530309 AAGGGTATTTTTATAATTTTGTAAATT
1 AAGGGTATTTTGGTAATTCTACAAACT
* * *
57530336 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTCTACAAACT
*
57530363 AAGGGTATTTCGGTAATT-TCACAAAC-
1 AAGGGTATTTTGGTAATTCT-ACAAACT
* * *
57530389 CAGTGGTATTTCGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTCTACAAACT
* *
57530417 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTCTACAAACT
* **
57530444 AGGGGTATTTTGGTAATTCTATCCTAC-
1 AAGGGTATTTTGGTAATTCTA-CAAACT
*
57530471 AAGGGTATTTTAGTAATT
1 AAGGGTATTTTGGTAATT
57530489 TCACAACCGA
Statistics
Matches: 194, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.02
27 157 0.81
28 19 0.10
29 15 0.08
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTCTACAAACT
Found at i:57530477 original size:54 final size:53
Alignment explanation
Indices: 57530335--57530494 Score: 194
Period size: 54 Copynumber: 3.0 Consensus size: 53
57530325 TTTTGTAAAT
* *
57530335 TAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAA-CAAGGGTATTTTGGTAATTTCACAAAC
* * * * *
57530389 CAGTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC-AAGGGTATTTTGGTAATTTCACAAAC
* ** *
57530443 TAGGGGTATTTTGGTAATTCTATCCTACAAGGGTATTTTAGTAATTTCACAA
1 TAGGGGTATTTTGGTAATTTTA-CAAACAAGGGTATTTTGGTAATTTCACAA
57530495 CCGAGGGTAA
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 85 0.97
55 3 0.03
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (53 bp):
TAGGGGTATTTTGGTAATTTTACAAACAAGGGTATTTTGGTAATTTCACAAAC
Found at i:57530478 original size:81 final size:81
Alignment explanation
Indices: 57530335--57530494 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 81
57530325 TTTTGTAAAT
* *
57530335 TAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACAAGTGGTATTT
* *
57530400 CGGTAATTTTACAAAC
66 CAGTAATTTCACAAAC
* * **
57530416 TAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAA-TTCTATCCTACAAG-GGTAT
1 TAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTC-A-CAAACAAGTGGTAT
*
57530479 TTTAGTAATTTCACAA
64 TTCAGTAATTTCACAA
57530495 CCGAGGGTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 3 0.04
81 60 0.88
82 5 0.07
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACAAGTGGTATTT
CAGTAATTTCACAAAC
Found at i:57530530 original size:27 final size:27
Alignment explanation
Indices: 57530496--57530646 Score: 196
Period size: 27 Copynumber: 5.6 Consensus size: 27
57530486 ATTTCACAAC
*
57530496 CGAGGGTAAAACGGTAATTTTGTAAA-
1 CGAGGGTAAAATGGTAATTTTGTAAAT
57530522 CTGAGGGTAAAATGGTAATTTTGTAAAT
1 C-GAGGGTAAAATGGTAATTTTGTAAAT
** *
57530550 TAAGGGTAAAATGGTAATTTTATAAAT
1 CGAGGGTAAAATGGTAATTTTGTAAAT
57530577 CGAGGGTAAAATGGTAATTTTGTAAAT
1 CGAGGGTAAAATGGTAATTTTGTAAAT
* * * * *
57530604 CAAGGGTGAAACGGTAATTCTATAAAT
1 CGAGGGTAAAATGGTAATTTTGTAAAT
*
57530631 CGAGGGTTAAATGGTA
1 CGAGGGTAAAATGGTA
57530647 GTTCTACAAA
Statistics
Matches: 108, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 107 0.99
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.31
Consensus pattern (27 bp):
CGAGGGTAAAATGGTAATTTTGTAAAT
Found at i:57530651 original size:27 final size:27
Alignment explanation
Indices: 57530496--57530663 Score: 194
Period size: 27 Copynumber: 6.2 Consensus size: 27
57530486 ATTTCACAAC
* *
57530496 CGAGGGTAAAACGGTAATTTTGTAAA-
1 CGAGGGTAAAATGGTAATTTTATAAAT
*
57530522 CTGAGGGTAAAATGGTAATTTTGTAAAT
1 C-GAGGGTAAAATGGTAATTTTATAAAT
**
57530550 TAAGGGTAAAATGGTAATTTTATAAAT
1 CGAGGGTAAAATGGTAATTTTATAAAT
*
57530577 CGAGGGTAAAATGGTAATTTTGTAAAT
1 CGAGGGTAAAATGGTAATTTTATAAAT
* * * *
57530604 CAAGGGTGAAACGGTAATTCTATAAAT
1 CGAGGGTAAAATGGTAATTTTATAAAT
* * * *
57530631 CGAGGGTTAAATGGTAGTTCTACAAAT
1 CGAGGGTAAAATGGTAATTTTATAAAT
57530658 CGAGGG
1 CGAGGG
57530664 CATTTCAGTA
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 122 0.99
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.30
Consensus pattern (27 bp):
CGAGGGTAAAATGGTAATTTTATAAAT
Found at i:57530658 original size:54 final size:54
Alignment explanation
Indices: 57530498--57530646 Score: 228
Period size: 54 Copynumber: 2.8 Consensus size: 54
57530488 TTCACAACCG
* *
57530498 AGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATTA
1 AGGGTAAAACGGTAATTTTATAAATC-GAGGGTAAAATGGTAATTTTGTAAATCA
*
57530552 AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCA
1 AGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCA
* * *
57530606 AGGGTGAAACGGTAATTCTATAAATCGAGGGTTAAATGGTA
1 AGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTA
57530647 GTTCTACAAA
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 86 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.32
Consensus pattern (54 bp):
AGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCA
Found at i:57535049 original size:45 final size:45
Alignment explanation
Indices: 57534961--57535118 Score: 216
Period size: 45 Copynumber: 3.6 Consensus size: 45
57534951 CGGTATTTCA
* * *
57534961 CCTGCTAGGCTCGAA-GCCCG-ATA-TCATTTCACCAGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGGCATTATAG
57535004 CCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCACCGGCATTATAG
1 CCTGCTAGGCTC-AAAGGCCCGAATAGTATCTCACCGGCATTATAG
* *
57535049 CCTGCTAGGCTCAAAGGCCTGAATAGTATCTCACCGACATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAG
*
57535094 CCTGCTAGGCTCAAAGGCCTGAATA
1 CCTGCTAGGCTCAAAGGCCCGAATA
57535119 ATACTGTGCG
Statistics
Matches: 106, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
43 12 0.11
44 10 0.09
45 83 0.78
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAG
Found at i:57537672 original size:40 final size:40
Alignment explanation
Indices: 57537575--57537738 Score: 262
Period size: 39 Copynumber: 4.2 Consensus size: 40
57537565 GGACTAAGAT
* *
57537575 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
57537615 TC-AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
57537654 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
57537693 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
57537732 CCGAAGG
1 CCGAAGG
57537739 TACTTGGGTT
Statistics
Matches: 116, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
38 7 0.06
39 72 0.62
40 37 0.32
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:57537700 original size:79 final size:78
Alignment explanation
Indices: 57537575--57537738 Score: 267
Period size: 79 Copynumber: 2.1 Consensus size: 78
57537565 GGACTAAGAT
*
57537575 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCTCAAGGCATTTGTGCGAGTTACTAT
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCTCAAGGCATTTGTGCGAGTTACTAT
*
57537640 ATCCGGGCTAAGTC
66 ATCC-GGCTAAATC
* *
57537654 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTGCTA
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCTC-AAGGCATTTGTGCGAGTTACTA
57537718 TATCCGGCTAAATC
65 TATCCGGCTAAATC
57537732 CCGAAGG
1 CCGAAGG
57537739 TACTTGGGTT
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
78 16 0.20
79 64 0.80
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCTCAAGGCATTTGTGCGAGTTACTAT
ATCCGGCTAAATC
Found at i:57543355 original size:40 final size:40
Alignment explanation
Indices: 57543311--57543536 Score: 291
Period size: 40 Copynumber: 5.7 Consensus size: 40
57543301 GCTACTCGTT
* * *
57543311 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
57543351 CAAATGCCTTCGAGA-CTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCG-GATCTTAGCCCGGATTTAGTAACTCGCA
*
57543391 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
57543431 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * *
57543471 CAATTGCCTTCGGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
57543512 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
57543537 CATCATTCGA
Statistics
Matches: 171, Mismatches: 10, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
39 3 0.02
40 156 0.91
41 12 0.07
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:57547101 original size:27 final size:28
Alignment explanation
Indices: 57547045--57547114 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
57547035 AAACTTGTAC
57547045 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
57547073 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
57547100 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
57547115 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:57547125 original size:27 final size:27
Alignment explanation
Indices: 57547045--57547126 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
57547035 AAACTTGTAC
* *
57547045 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
57547073 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
57547100 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
57547127 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:57552181 original size:40 final size:40
Alignment explanation
Indices: 57552133--57552298 Score: 246
Period size: 40 Copynumber: 4.2 Consensus size: 40
57552123 GGACTAAGAT
* * *
57552133 CCGAAGGCATTTGTGCTAGTGACTATATTCTGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
57552173 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
57552213 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
57552253 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
57552292 CCGAAGG
1 CCGAAGG
57552299 TACTTGGGTT
Statistics
Matches: 117, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 15 0.13
40 101 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:57553822 original size:47 final size:47
Alignment explanation
Indices: 57553769--57553906 Score: 224
Period size: 47 Copynumber: 3.0 Consensus size: 47
57553759 TTTTCTTTAC
* * *
57553769 CTAAGTAACTTATTCGGAAATAATAAGGGCAAATTTAACAAGCTTAA
1 CTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGCTTAA
*
57553816 CTAAGTAACTTATCCGGAAATATTAAGAGTAAATTTAACAAGCTTAA
1 CTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGCTTAA
*
57553863 CTAAGTAACTTATCCGAAAATATTAAGAGC-AATTTAACAAGCTT
1 CTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGCTT
57553907 TAAATTCAAC
Statistics
Matches: 85, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
46 14 0.16
47 71 0.84
ACGTcount: A:0.44, C:0.14, G:0.13, T:0.29
Consensus pattern (47 bp):
CTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGCTTAA
Found at i:57556129 original size:57 final size:57
Alignment explanation
Indices: 57556067--57556181 Score: 185
Period size: 57 Copynumber: 2.0 Consensus size: 57
57556057 ACGGGAGCAC
* * ** *
57556067 CCCAAGGCGAAAAACTCGATCTTGCAAATCTTTTATCGGTTAATTCTTGCAACTGAG
1 CCCAAGGCGAAAAACTCGATCGTGCAAATCCTCGATCAGTTAATTCTTGCAACTGAG
57556124 CCCAAGGCGAAAAACTCGATCGTGCAAATCCTCGATCAGTTAATTCTTGCAACTGAG
1 CCCAAGGCGAAAAACTCGATCGTGCAAATCCTCGATCAGTTAATTCTTGCAACTGAG
57556181 C
1 C
57556182 TTTTAGTTCT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (57 bp):
CCCAAGGCGAAAAACTCGATCGTGCAAATCCTCGATCAGTTAATTCTTGCAACTGAG
Found at i:57557875 original size:40 final size:40
Alignment explanation
Indices: 57557821--57557990 Score: 227
Period size: 40 Copynumber: 4.2 Consensus size: 40
57557811 CACAAGGCCG
* * *
57557821 TCGGGTCTTAGCCCGG-ATATGGTCACTAGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCT
*
57557861 TCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCT
* *
57557901 TCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
* * *
57557941 TCGGGACTTAGCCCGGAATTAATCACTAGCACAAATGTCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
57557981 TCGGGACTTA
1 TCGGGACTTA
57557991 ACCCCGTTAG
Statistics
Matches: 119, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
40 117 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
Found at i:57564353 original size:40 final size:40
Alignment explanation
Indices: 57564263--57564487 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
57564253 TCGAATGATG
* * *
57564263 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTAACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
57564303 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57564343 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAATTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57564382 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
57564422 TCCAGGCTAAGTCCCGAAGGCAATTGTGTGAGTTACTCTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAA
* *
57564463 -CCGGGCTATGTCCCGAAGGCCTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57564488 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 35 0.22
40 114 0.72
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57564494 original size:80 final size:79
Alignment explanation
Indices: 57564267--57564487 Score: 234
Period size: 79 Copynumber: 2.8 Consensus size: 79
57564257 ATGATGTCCG
* * * * * *
57564267 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTAACTATATTCGGACTAAGAT-CCGAAGGCATTTGT
1 GGCTAAG-CCCGAAGGCATTGGTGCGAA-TTACTAAATCCGGGCTAAG-TCCCGAAGGCATTTGT
* *
57564330 GCGAGTTACTAATTCCG
63 GCGAGTTACTAAATCCA
*
57564347 GGCTAAGCCCGAAGGCATTGGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCG
1 GGCTAAGCCCGAAGGCATTGGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
57564412 AGTTACTAAATCCA
66 AGTTACTAAATCCA
* * * * *
57564426 GGCTAAGTCCCGAAGGCAATT-GTGTGAGTTACTCTAA-CCGGGCTATGTCCCGAAGGCCTTTG
1 GGCTAAG-CCCGAAGGC-ATTGGTGCGAATTACT-AAATCCGGGCTAAGTCCCGAAGGCATTTG
57564488 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.49
80 56 0.46
81 5 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
GGCTAAGCCCGAAGGCATTGGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
AGTTACTAAATCCA
Found at i:57569311 original size:40 final size:40
Alignment explanation
Indices: 57569261--57569470 Score: 289
Period size: 40 Copynumber: 5.2 Consensus size: 40
57569251 TACAAGGCCG
* * * *
57569261 TCGGGTCTTAGCCCGG-ATATGGTCACTAGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCT
57569301 TCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCT
*
57569341 TCGGGACTTAGCCTGGAATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCT
*
57569381 TCGGGACTTAGCCTGGAATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCT
* * * * *
57569421 TCGGTACTTAGCCCGGAATTAATCACTAGCACAAATGTCT
1 TCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCT
57569461 TCGGGACTTA
1 TCGGGACTTA
57569471 ACCCCGTTAG
Statistics
Matches: 157, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 155 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCT
Found at i:57572201 original size:6 final size:6
Alignment explanation
Indices: 57572189--57572246 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
57572179 AAGAAATATT
* * *
57572189 ATCAGA ATTAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAAA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATC-AGA
57572239 ATCAGA AT
1 ATCAGA AT
57572247 GTGAATGGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
5 2 0.05
6 31 0.74
7 8 0.19
8 1 0.02
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:57572426 original size:27 final size:27
Alignment explanation
Indices: 57572384--57572435 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
57572374 CTCAGTTATC
* *
57572384 AGATATTGTGATAGAGTCACCAGATAT
1 AGATATTGTGACAGAGCCACCAGATAT
*
57572411 AGATATTGTGGCAGAGCCACCAGAT
1 AGATATTGTGACAGAGCCACCAGAT
57572436 CAGATAATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (27 bp):
AGATATTGTGACAGAGCCACCAGATAT
Found at i:57572454 original size:26 final size:27
Alignment explanation
Indices: 57572401--57572456 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
57572391 GTGATAGAGT
* * * *
57572401 CACCAGATATAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTAGCAAAGC
57572428 CACCAGAT-CAGATAATGTAGCAAAGC
1 CACCAGATACAGATAATGTAGCAAAGC
57572454 CAC
1 CAC
57572457 TTAACAGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATAATGTAGCAAAGC
Found at i:57572643 original size:22 final size:22
Alignment explanation
Indices: 57572615--57572679 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
57572605 GCAAATACGT
*
57572615 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
57572637 TTGGCACAGAGCCA-CATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
57572659 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
57572680 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:57573162 original size:27 final size:27
Alignment explanation
Indices: 57573132--57573191 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
57573122 AAGTATCTCG
*
57573132 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGAGGTATTTTA
*
57573159 GTAATTCTACCCTACAGAGGTATTTTG
1 GTAATTCTACCCTACAGAGGTATTTTA
57573186 GTAATT
1 GTAATT
57573192 TTACAATCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAGAGGTATTTTA
Found at i:57579419 original size:13 final size:13
Alignment explanation
Indices: 57579401--57579425 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57579391 ACAAACGATA
57579401 AAATTTTCACACG
1 AAATTTTCACACG
57579414 AAATTTTCACAC
1 AAATTTTCACAC
57579426 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:57588404 original size:43 final size:42
Alignment explanation
Indices: 57588253--57588404 Score: 130
Period size: 43 Copynumber: 3.5 Consensus size: 42
57588243 TACCATATCC
* * *
57588253 CAGATATGGTCTTACATGTAGATATGTAT-CAATGCCACTGTCT
1 CAGACATGGTCTTACATGTA-ATCT-TATACAATGCCAATGTCT
* * * *
57588296 CAGACAAGGTCTTAC-TGGAAATCATTATACGATGCTAATGTCT
1 CAGACATGGTCTTACAT-GTAATC-TTATACAATGCCAATGTCT
* ** *
57588339 GAGACATGGTCTTACACCTAATCTCAATACAATGCCAATGTC-
1 CAGACATGGTCTTACATGTAATCT-TATACAATGCCAATGTCT
57588381 CTAGACATGGTCTTACATGTAATC
1 C-AGACATGGTCTTACATGTAATC
57588405 ACATCACGAT
Statistics
Matches: 85, Mismatches: 18, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
42 7 0.08
43 78 0.92
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (42 bp):
CAGACATGGTCTTACATGTAATCTTATACAATGCCAATGTCT
Found at i:57588569 original size:17 final size:17
Alignment explanation
Indices: 57588514--57588572 Score: 82
Period size: 17 Copynumber: 3.5 Consensus size: 17
57588504 GTAATTACTC
*
57588514 GTTCAATATTCACAATA
1 GTTCAATATTCACAACA
* *
57588531 GTTAAATATTCAAAACA
1 GTTCAATATTCACAACA
57588548 GTTCAATATTCACAACA
1 GTTCAATATTCACAACA
*
57588565 ATTCAATA
1 GTTCAATA
57588573 ACAAGTAAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 36 1.00
ACGTcount: A:0.46, C:0.17, G:0.05, T:0.32
Consensus pattern (17 bp):
GTTCAATATTCACAACA
Found at i:57598840 original size:20 final size:21
Alignment explanation
Indices: 57598807--57598864 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 21
57598797 ATAAATTATG
* * *
57598807 TACCACTCCCTTTACTTTC-T
1 TACCATTCCATTTACTTACTT
57598827 TACCATTCCATTTACTTACTT
1 TACCATTCCATTTACTTACTT
*
57598848 TA-CATTTCATTTACTTA
1 TACCATTCCATTTACTTA
57598865 ACATAAACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 30 0.91
21 3 0.09
ACGTcount: A:0.22, C:0.29, G:0.00, T:0.48
Consensus pattern (21 bp):
TACCATTCCATTTACTTACTT
Found at i:57611811 original size:40 final size:40
Alignment explanation
Indices: 57611752--57611893 Score: 115
Period size: 40 Copynumber: 3.5 Consensus size: 40
57611742 AAATCGAATA
* * * *
57611752 ATATCCAGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
57611792 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
57611832 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
57611872 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
57611894 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:57611894 original size:40 final size:39
Alignment explanation
Indices: 57611791--57611919 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
57611781 TGCTGGAAAT
* * *
57611791 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
57611831 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
57611871 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
57611911 TATATCCGG
1 TATATCCGG
57611920 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:57617361 original size:28 final size:28
Alignment explanation
Indices: 57617300--57617397 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
57617290 TCACAAATTG
** * *
57617300 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
57617329 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
57617357 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
57617385 GCACTAAGTGTGC
1 GCACTAAGTGTGC
57617398 GGGCTTATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:57625027 original size:28 final size:28
Alignment explanation
Indices: 57624966--57625063 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
57624956 TCACAAATTG
** * *
57624966 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
57624995 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
57625023 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
57625051 GCACTAAGTGTGC
1 GCACTAAGTGTGC
57625064 GGGCTTATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:57626640 original size:42 final size:42
Alignment explanation
Indices: 57626559--57626767 Score: 150
Period size: 42 Copynumber: 4.7 Consensus size: 42
57626549 ATGTTGGTGC
* * * ** *
57626559 CGATGCTATGTCCCAGACACGGTCTTACACGGGACCTCATAT
1 CGATGCCATATCCCAGACATGGTCTTACACGAAATCTCATAT
*
57626601 CGATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
1 CGATGCCATATCCCAGACATGGTCTTACACGAAATCTCATAT
* ** * * * *
57626643 CAACACCACATCCCAGATATGGTCTTACATGAAATCACATACTGAGGT
1 CGATGCCATATCCCAGACATGGTCTTACACGAAATCTC--A-T-A--T
* *
57626691 CGATGCCATATCCCAGATATGGTCTTACACTCGCACACATATCA-AT
1 CGATGCCATATCCCAGACATGGTCTTACA--CG-A-A-ATCTCATAT
*
57626737 CCGATGCCATATCCCAGACGTGGTCTTACAC
1 -CGATGCCATATCCCAGACATGGTCTTACAC
57626768 TGGCTCTCAT
Statistics
Matches: 133, Mismatches: 22, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
42 67 0.50
44 1 0.01
45 2 0.02
46 2 0.02
47 27 0.20
48 27 0.20
50 1 0.01
51 2 0.02
52 1 0.01
53 3 0.02
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (42 bp):
CGATGCCATATCCCAGACATGGTCTTACACGAAATCTCATAT
Found at i:57626730 original size:48 final size:48
Alignment explanation
Indices: 57626601--57626862 Score: 170
Period size: 48 Copynumber: 5.6 Consensus size: 48
57626591 GACCTCATAT
* * *
57626601 CGATGCCATGTCCCAGACATGGTCTTACAC-GAAATCTCATATCAA--
1 CGATGCCATATCCCAGATATGGTCTTACACTGAAATCACATATCAATC
* * *
57626646 C-A--CCACATCCCAGATATGGTCTTACA-TGAAATCACATACTGAGGT-
1 CGATGCCATATCCCAGATATGGTCTTACACTGAAATCACATA-TCA-ATC
*
57626691 CGATGCCATATCCCAGATATGGTCTTACACTCG-CA-CACATATCAATC
1 CGATGCCATATCCCAGATATGGTCTTACACT-GAAATCACATATCAATC
** ** * *
57626738 CGATGCCATATCCCAGACGTGGTCTTACACTG-GCTCTCATATCCATGC
1 CGATGCCATATCCCAGATATGGTCTTACACTGAAATCACATATCAAT-C
* * * * ** * *
57626786 CGATCCCATGTCCCAAACATGGTCTTACACTG-GCTCTCATATCCATGC
1 CGATGCCATATCCCAGATATGGTCTTACACTGAAATCACATATCAAT-C
** * *
57626834 CGATGCCACGTCCCAAACATGGTCTTACA
1 CGATGCCATATCCCAGATATGGTCTTACA
57626863 TTGGCTCTCA
Statistics
Matches: 183, Mismatches: 22, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
42 31 0.17
43 2 0.01
44 1 0.01
45 2 0.01
46 3 0.02
47 40 0.22
48 101 0.55
49 2 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (48 bp):
CGATGCCATATCCCAGATATGGTCTTACACTGAAATCACATATCAATC
Found at i:57626868 original size:48 final size:48
Alignment explanation
Indices: 57626691--57626874 Score: 244
Period size: 48 Copynumber: 3.9 Consensus size: 48
57626681 ATACTGAGGT
* * * * * *
57626691 CGATGCCATATCCCAGATATGGTCTTACACTCGCACACATATCAAT-C
1 CGATGCCATATCCCAAACATGGTCTTACACTGGCTCTCATATCCATGC
* *
57626738 CGATGCCATATCCCAGACGTGGTCTTACACTGGCTCTCATATCCATGC
1 CGATGCCATATCCCAAACATGGTCTTACACTGGCTCTCATATCCATGC
* *
57626786 CGATCCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCCATGC
1 CGATGCCATATCCCAAACATGGTCTTACACTGGCTCTCATATCCATGC
** *
57626834 CGATGCCACGTCCCAAACATGGTCTTACATTGGCTCTCATA
1 CGATGCCATATCCCAAACATGGTCTTACACTGGCTCTCATA
57626875 AATCATGGTG
Statistics
Matches: 123, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 40 0.33
48 83 0.67
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (48 bp):
CGATGCCATATCCCAAACATGGTCTTACACTGGCTCTCATATCCATGC
Found at i:57626868 original size:96 final size:95
Alignment explanation
Indices: 57626691--57626874 Score: 242
Period size: 95 Copynumber: 1.9 Consensus size: 95
57626681 ATACTGAGGT
* * * * *
57626691 CGATGCCATATCCCAGATATGGTCTTACACTCGCACACATATCAATCCGATGCCATATCCCAGAC
1 CGATCCCATATCCCAAACATGGTCTTACACTCGCACACATATCAATCCGATGCCACATCCCAAAC
*
57626756 GTGGTCTTACACTGGCTCTCATATCCATGC
66 ATGGTCTTACACTGGCTCTCATATCCATGC
* * * * * *
57626786 CGATCCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCCATGCCGATGCCACGTCCCAAA
1 CGATCCCATATCCCAAACATGGTCTTACACTCGCACACATATCAAT-CCGATGCCACATCCCAAA
*
57626851 CATGGTCTTACATTGGCTCTCATA
65 CATGGTCTTACACTGGCTCTCATA
57626875 AATCATGGTG
Statistics
Matches: 75, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
95 38 0.51
96 37 0.49
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (95 bp):
CGATCCCATATCCCAAACATGGTCTTACACTCGCACACATATCAATCCGATGCCACATCCCAAAC
ATGGTCTTACACTGGCTCTCATATCCATGC
Found at i:57634293 original size:37 final size:37
Alignment explanation
Indices: 57634228--57634304 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
57634218 TAGGATTATC
* * *
57634228 TTTGATATGATCAAAGTTTGTACGAGCTTACTAAGCA
1 TTTGATATGATCAAAATTTATACCAGCTTACTAAGCA
*
57634265 TTTGTTATGATCAAAATTTATACCAGCTTACTAAGCA
1 TTTGATATGATCAAAATTTATACCAGCTTACTAAGCA
57634302 TTT
1 TTT
57634305 ATTGTTGACG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (37 bp):
TTTGATATGATCAAAATTTATACCAGCTTACTAAGCA
Found at i:57638628 original size:6 final size:6
Alignment explanation
Indices: 57638608--57638659 Score: 77
Period size: 6 Copynumber: 8.2 Consensus size: 6
57638598 AAACTAATTT
57638608 AATATAA AATAAAA AATAAA AATAAA AATAAA AATAAA AATAAAA AATAAA
1 AATA-AA AAT-AAA AATAAA AATAAA AATAAA AATAAA AAT-AAA AATAAA
57638659 A
1 A
57638660 TAAGATCTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
6 28 0.65
7 14 0.33
8 1 0.02
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:57638628 original size:12 final size:12
Alignment explanation
Indices: 57638608--57638662 Score: 58
Period size: 13 Copynumber: 4.4 Consensus size: 12
57638598 AAACTAATTT
*
57638608 AATATAAAATAA
1 AATAAAAAATAA
*
57638620 AAAATAAAAATAA
1 AATA-AAAAATAA
57638633 AA-ATAAAAATAAA
1 AATA-AAAAAT-AA
57638646 AATAAAAAATAA
1 AATAAAAAATAA
57638658 AATAA
1 AATAA
57638663 GATCTTTTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
12 18 0.47
13 19 0.50
14 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (12 bp):
AATAAAAAATAA
Found at i:57650794 original size:12 final size:11
Alignment explanation
Indices: 57650777--57650820 Score: 63
Period size: 11 Copynumber: 4.0 Consensus size: 11
57650767 CTAATTTAAT
57650777 ATAAAATCAAAA
1 ATAAAAT-AAAA
57650789 ATAAAATAAAA
1 ATAAAATAAAA
*
57650800 ATAAAA-ATAA
1 ATAAAATAAAA
57650810 ATAAAATAAAA
1 ATAAAATAAAA
57650821 TAGGATTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 9 0.31
11 13 0.45
12 7 0.24
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:57650799 original size:17 final size:15
Alignment explanation
Indices: 57650777--57650820 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 15
57650767 CTAATTTAAT
57650777 ATAAAATCAAAAATAAA
1 ATAAAAT-AAAAAT-AA
57650794 ATAAAAATAAAAATAA
1 AT-AAAATAAAAATAA
57650810 ATAAAATAAAA
1 ATAAAATAAAA
57650821 TAGGATTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 9 0.35
16 4 0.15
17 8 0.31
18 5 0.19
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (15 bp):
ATAAAATAAAAATAA
Found at i:57655363 original size:39 final size:39
Alignment explanation
Indices: 57655282--57655444 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
57655272 TATGGTAACC
** *
57655282 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
57655322 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
57655361 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
57655400 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
57655439 CGCACA
1 CGCACA
57655445 TTCATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:57669396 original size:29 final size:29
Alignment explanation
Indices: 57669363--57669431 Score: 129
Period size: 29 Copynumber: 2.4 Consensus size: 29
57669353 CACAAGCGTG
*
57669363 TAGGCCCATTTGGGCTGAGAAATGGGCCC
1 TAGGCCCATTTGGGCTGAAAAATGGGCCC
57669392 TAGGCCCATTTGGGCTGAAAAATGGGCCC
1 TAGGCCCATTTGGGCTGAAAAATGGGCCC
57669421 TAGGCCCATTT
1 TAGGCCCATTT
57669432 ACACTGTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (29 bp):
TAGGCCCATTTGGGCTGAAAAATGGGCCC
Found at i:57675172 original size:3 final size:3
Alignment explanation
Indices: 57675164--57675199 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
57675154 TGTATACACA
57675164 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT
1 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT
57675200 TTTTAAGAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
GTT
Found at i:57679433 original size:34 final size:34
Alignment explanation
Indices: 57679395--57679470 Score: 152
Period size: 34 Copynumber: 2.2 Consensus size: 34
57679385 TTCATACAAA
57679395 TATAATATGGCAAATGATGAATGACGACATAAAT
1 TATAATATGGCAAATGATGAATGACGACATAAAT
57679429 TATAATATGGCAAATGATGAATGACGACATAAAT
1 TATAATATGGCAAATGATGAATGACGACATAAAT
57679463 TATAATAT
1 TATAATAT
57679471 ACATTATCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.47, C:0.08, G:0.16, T:0.29
Consensus pattern (34 bp):
TATAATATGGCAAATGATGAATGACGACATAAAT
Found at i:57679799 original size:24 final size:22
Alignment explanation
Indices: 57679742--57679802 Score: 68
Period size: 24 Copynumber: 2.7 Consensus size: 22
57679732 AAAAGATACA
* *
57679742 AAAATAAATAAACAAAATTATG
1 AAAATAAATAAAAAAAATTAAG
* *
57679764 AACATATATAAAAATAAATATAAG
1 AAAATAAATAAAAA-AAAT-TAAG
57679788 AAAATAAATAAAAAA
1 AAAATAAATAAAAAA
57679803 TTTTTAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
22 11 0.35
23 5 0.16
24 15 0.48
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.21
Consensus pattern (22 bp):
AAAATAAATAAAAAAAATTAAG
Found at i:57680131 original size:12 final size:12
Alignment explanation
Indices: 57680116--57680206 Score: 78
Period size: 13 Copynumber: 7.2 Consensus size: 12
57680106 TATAGGGAAT
57680116 AATATATAATAAA
1 AATATATAAT-AA
57680129 ATATGATATGTAATAA
1 A-AT-ATA--TAATAA
57680145 AATATATAAATAA
1 AATATAT-AATAA
57680158 AATATATAATAA
1 AATATATAATAA
57680170 AATATA-AATAA
1 AATATATAATAA
* *
57680181 TATGATAAAATAA
1 AAT-ATATAATAA
*
57680194 CATATA-AATAA
1 AATATATAATAA
57680205 AA
1 AA
57680207 ATAATATATA
Statistics
Matches: 68, Mismatches: 3, Indels: 16
0.78 0.03 0.18
Matches are distributed among these distances:
11 13 0.19
12 18 0.26
13 20 0.29
14 5 0.07
15 5 0.07
16 3 0.04
17 4 0.06
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (12 bp):
AATATATAATAA
Found at i:57680142 original size:17 final size:17
Alignment explanation
Indices: 57680117--57680216 Score: 58
Period size: 15 Copynumber: 6.4 Consensus size: 17
57680107 ATAGGGAATA
57680117 ATATATAATAAAATATG
1 ATATATAATAAAATATG
*
57680134 ATATGTAAT-AAA-AT-
1 ATATATAATAAAATATG
57680148 ATATA-AATAAAATAT-
1 ATATATAATAAAATATG
* *
57680163 ATA-ATAA-AATATA-A
1 ATATATAATAAAATATG
* **
57680177 ATAATATGATAAAATAAC
1 AT-ATATAATAAAATATG
*
57680195 ATATA-AATAAAA-ATA
1 ATATATAATAAAATATG
57680210 ATATATA
1 ATATATA
57680217 CTATTTTATA
Statistics
Matches: 65, Mismatches: 9, Indels: 19
0.70 0.10 0.20
Matches are distributed among these distances:
13 3 0.05
14 15 0.23
15 16 0.25
16 13 0.20
17 16 0.25
18 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:57680183 original size:19 final size:17
Alignment explanation
Indices: 57680152--57680216 Score: 71
Period size: 19 Copynumber: 3.8 Consensus size: 17
57680142 TAAAATATAT
57680152 AAATAAAATATATAATA
1 AAATAAAATATATAATA
*
57680169 AAATATAAATAATATGATA
1 AAATA-AAAT-ATATAATA
*
57680188 AAATAACATATA-AATA
1 AAATAAAATATATAATA
*
57680204 AAA-ATAATATATA
1 AAATAAAATATATA
57680217 CTATTTTATA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
15 6 0.15
16 7 0.17
17 8 0.20
18 7 0.17
19 12 0.30
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
AAATAAAATATATAATA
Found at i:57680198 original size:24 final size:23
Alignment explanation
Indices: 57680148--57680210 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 23
57680138 GTAATAAAAT
*
57680148 ATATAAATAAAATATATAATAAA
1 ATATAAATAAAATATAAAATAAA
* *
57680171 ATATAAATAATATGATAAAATAAC
1 ATATAAATAAAAT-ATAAAATAAA
57680195 ATATAAATAAAA-ATAA
1 ATATAAATAAAATATAA
57680211 TATATACTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
22 4 0.11
23 12 0.34
24 19 0.54
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (23 bp):
ATATAAATAAAATATAAAATAAA
Found at i:57682715 original size:26 final size:25
Alignment explanation
Indices: 57682686--57682737 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
57682676 TCCAACATGC
57682686 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCT-CTAGGGGT
* *
57682712 ATTTCGGTACTTTATCTCTAGGGGT
1 ATTTAGGTAATTTATCTCTAGGGGT
57682737 A
1 A
57682738 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.40
Consensus pattern (25 bp):
ATTTAGGTAATTTATCTCTAGGGGT
Found at i:57684000 original size:12 final size:12
Alignment explanation
Indices: 57683983--57684076 Score: 50
Period size: 12 Copynumber: 7.9 Consensus size: 12
57683973 GCCAACTCCT
*
57683983 GCTCCTTGATCA
1 GCTCCTTAATCA
* *
57683995 GCTCCTAAATCT
1 GCTCCTTAATCA
* *
57684007 TCTCCTTTATCA
1 GCTCCTTAATCA
* *
57684019 GCTCCTAAATCC
1 GCTCCTTAATCA
*
57684031 TCTCCCTT-ATCA
1 GCT-CCTTAATCA
*
57684043 GCTCCTAAATC-
1 GCTCCTTAATCA
*
57684054 TCTCCCTT-ATCA
1 GCT-CCTTAATCA
*
57684066 GCTCCTAAATC
1 GCTCCTTAATC
57684077 TTCTCCTGAC
Statistics
Matches: 57, Mismatches: 20, Indels: 10
0.66 0.23 0.11
Matches are distributed among these distances:
11 11 0.19
12 43 0.75
13 3 0.05
ACGTcount: A:0.21, C:0.37, G:0.06, T:0.35
Consensus pattern (12 bp):
GCTCCTTAATCA
Found at i:57684011 original size:24 final size:23
Alignment explanation
Indices: 57683984--57684083 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 23
57683974 CCAACTCCTG
57683984 CTCCTTGATCAGCTCCTAAATCTT
1 CTCCTT-ATCAGCTCCTAAATCTT
*
57684008 CTCCTTTATCAGCTCCTAAATCCT
1 CTCC-TTATCAGCTCCTAAATCTT
57684032 CTCCCTTATCAGCTCCTAAATC-T
1 CT-CCTTATCAGCTCCTAAATCTT
57684055 CTCCCTTATCAGCTCCTAAATCTT
1 CT-CCTTATCAGCTCCTAAATCTT
57684079 CTCCT
1 CTCCT
57684084 GACAGCCTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
23 26 0.36
24 42 0.58
25 4 0.06
ACGTcount: A:0.20, C:0.38, G:0.05, T:0.37
Consensus pattern (23 bp):
CTCCTTATCAGCTCCTAAATCTT
Found at i:57684070 original size:47 final size:49
Alignment explanation
Indices: 57683986--57684082 Score: 162
Period size: 47 Copynumber: 2.0 Consensus size: 49
57683976 AACTCCTGCT
*
57683986 CCTTGATCAGCTCCTAAATCTTCTCCTTTATCAGCTCCTAAATCCTCTC
1 CCTTGATCAGCTCCTAAATCTTCTCCCTTATCAGCTCCTAAATCCTCTC
*
57684035 CCTT-ATCAGCTCCTAAATC-TCTCCCTTATCAGCTCCTAAATCTTCTC
1 CCTTGATCAGCTCCTAAATCTTCTCCCTTATCAGCTCCTAAATCCTCTC
57684082 C
1 C
57684083 TGACAGCCTT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 27 0.59
48 15 0.33
49 4 0.09
ACGTcount: A:0.21, C:0.38, G:0.05, T:0.36
Consensus pattern (49 bp):
CCTTGATCAGCTCCTAAATCTTCTCCCTTATCAGCTCCTAAATCCTCTC
Found at i:57684769 original size:15 final size:15
Alignment explanation
Indices: 57684749--57684779 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
57684739 ACACATGAAA
57684749 GACGTCATGGATTCT
1 GACGTCATGGATTCT
57684764 GACGTCATGGATTCT
1 GACGTCATGGATTCT
57684779 G
1 G
57684780 TCCAACTCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.32
Consensus pattern (15 bp):
GACGTCATGGATTCT
Found at i:57690590 original size:26 final size:26
Alignment explanation
Indices: 57690561--57690613 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
57690551 TCTAACATGC
57690561 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
57690587 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
57690613 A
1 A
57690614 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:57691884 original size:12 final size:12
Alignment explanation
Indices: 57691867--57691961 Score: 52
Period size: 12 Copynumber: 7.9 Consensus size: 12
57691857 GCCAACTCCT
*
57691867 GCTCCTTGATCA
1 GCTCCTTAATCA
*
57691879 GCTCCTAAATC-
1 GCTCCTTAATCA
*
57691890 GTCTCCTTTATCA
1 G-CTCCTTAATCA
*
57691903 GCTCCTAAATCA
1 GCTCCTTAATCA
* *
57691915 CCTCCCGT-ATCA
1 GCT-CCTTAATCA
*
57691927 GCTCCTAAATCA
1 GCTCCTTAATCA
* *
57691939 CCTCCCGT-ATCA
1 GCT-CCTTAATCA
*
57691951 GCTCCTAAATC
1 GCTCCTTAATC
57691962 TTCTCTTGAC
Statistics
Matches: 59, Mismatches: 18, Indels: 12
0.66 0.20 0.13
Matches are distributed among these distances:
11 5 0.08
12 49 0.83
13 5 0.08
ACGTcount: A:0.23, C:0.38, G:0.09, T:0.29
Consensus pattern (12 bp):
GCTCCTTAATCA
Found at i:57691902 original size:24 final size:24
Alignment explanation
Indices: 57691875--57691961 Score: 138
Period size: 24 Copynumber: 3.6 Consensus size: 24
57691865 CTGCTCCTTG
** **
57691875 ATCAGCTCCTAAATCGTCTCCTTT
1 ATCAGCTCCTAAATCACCTCCCGT
57691899 ATCAGCTCCTAAATCACCTCCCGT
1 ATCAGCTCCTAAATCACCTCCCGT
57691923 ATCAGCTCCTAAATCACCTCCCGT
1 ATCAGCTCCTAAATCACCTCCCGT
57691947 ATCAGCTCCTAAATC
1 ATCAGCTCCTAAATC
57691962 TTCTCTTGAC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.25, C:0.38, G:0.08, T:0.29
Consensus pattern (24 bp):
ATCAGCTCCTAAATCACCTCCCGT
Found at i:57706788 original size:18 final size:18
Alignment explanation
Indices: 57706765--57706799 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
57706755 TGGCGGACGC
57706765 ATAAACCAAGAAC-ACACG
1 ATAAACC-AGAACTACACG
57706783 ATAAACCAGAACTACAC
1 ATAAACCAGAACTACAC
57706800 CAGAATGAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.54, C:0.29, G:0.09, T:0.09
Consensus pattern (18 bp):
ATAAACCAGAACTACACG
Found at i:57707421 original size:55 final size:55
Alignment explanation
Indices: 57707324--57707450 Score: 141
Period size: 55 Copynumber: 2.3 Consensus size: 55
57707314 CAAACCTGCC
* * *
57707324 AAAACAACACAGGCGTTCGACACGCCCGTGTGAAAGAACCGTGGGT-GAACCTATT
1 AAAATAACACGGGCGTGCGACACGCCCGTGTGAAAGAACCGT-GGTCGAACCTATT
* ** * *
57707379 AAAATAGCACGGGCGTGCGACACGCCCGTGT-CTAGCACCCGTGGTCGAACCTGTT
1 AAAATAACACGGGCGTGCGACACGCCCGTGTGAAAG-AACCGTGGTCGAACCTATT
*
57707434 AAATTAACACGGGCGTG
1 AAAATAACACGGGCGTG
57707451 GGCCTACATA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 5 0.08
55 55 0.92
ACGTcount: A:0.28, C:0.27, G:0.28, T:0.17
Consensus pattern (55 bp):
AAAATAACACGGGCGTGCGACACGCCCGTGTGAAAGAACCGTGGTCGAACCTATT
Found at i:57709484 original size:40 final size:42
Alignment explanation
Indices: 57709421--57709504 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 42
57709411 ATGAAGATGT
*
57709421 TTAAAAAATTTGTTTATTATTTTATT-T-TTTTA-ATTTTTA
1 TTAAAAAATTTGTTTATTATTTTATTATATTTTATAATTTTA
*
57709460 TTAAAAATACTTT-TTTATTTTTTTATTATATTTTATAATTTTA
1 TTAAAAA-A-TTTGTTTATTATTTTATTATATTTTATAATTTTA
57709503 TT
1 TT
57709505 TTATAATTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
39 7 0.18
40 14 0.37
41 4 0.11
42 5 0.13
43 8 0.21
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (42 bp):
TTAAAAAATTTGTTTATTATTTTATTATATTTTATAATTTTA
Found at i:57709504 original size:13 final size:13
Alignment explanation
Indices: 57709472--57709512 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
57709462 AAAAATACTT
* *
57709472 TTTTATTTTTTTA
1 TTTTATTTTATAA
*
57709485 TTATATTTTATAA
1 TTTTATTTTATAA
57709498 TTTTATTTTATAA
1 TTTTATTTTATAA
57709511 TT
1 TT
57709513 ATAAATTTCG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTATTTTATAA
Found at i:57712046 original size:68 final size:70
Alignment explanation
Indices: 57711974--57712171 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
57711964 ACACCCTGTA
* * * *
57711974 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
57712036 ATAAAT
65 ATAAAT
*
57712042 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
57712107 ATAAAT
65 ATAAAT
*
57712113 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
57712172 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:57712085 original size:41 final size:41
Alignment explanation
Indices: 57712040--57712157 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
57712030 TGAAAGATAA
57712040 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
57712081 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
57712111 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
57712152 ATGTAG
1 ATGTAG
57712158 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:57712097 original size:71 final size:71
Alignment explanation
Indices: 57712008--57712171 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
57711998 GAGATGTATC
57712008 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
57712073 AGGACA
66 AGGACA
57712079 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
57712144 AGGACA
66 AGGACA
57712150 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
57712172 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:57719617 original size:68 final size:70
Alignment explanation
Indices: 57719545--57719742 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
57719535 ACACCCTGTA
* * * *
57719545 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
57719607 ATAAAT
65 ATAAAT
*
57719613 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
57719678 ATAAAT
65 ATAAAT
*
57719684 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
57719743 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:57719656 original size:41 final size:41
Alignment explanation
Indices: 57719611--57719728 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
57719601 TGAAAGATAA
57719611 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
57719652 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
57719682 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
57719723 ATGTAG
1 ATGTAG
57719729 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:57719668 original size:71 final size:71
Alignment explanation
Indices: 57719579--57719742 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
57719569 GAGATGTATC
57719579 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
57719644 AGGACA
66 AGGACA
57719650 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
57719715 AGGACA
66 AGGACA
57719721 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
57719743 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:57727976 original size:40 final size:40
Alignment explanation
Indices: 57727909--57728076 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
57727899 AGAAATCGAA
* * *
57727909 TATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
* * ***
57727948 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
*
57727988 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAAT
* * ** *
57728028 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
57728068 TATATCCGG
1 TATATCCGG
57728077 TTATATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 17 0.16
40 87 0.82
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
Found at i:57731024 original size:40 final size:40
Alignment explanation
Indices: 57730969--57731183 Score: 315
Period size: 40 Copynumber: 5.4 Consensus size: 40
57730959 AACATTGGCA
57730969 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCG
1 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCG
57731009 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCG
1 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCG
57731049 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCG
1 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCG
* * *
57731089 AGTTGATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCA
1 AGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCG
* * * * * *
57731129 AG-TCACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCG
1 AGTTGA-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCG
* *
57731169 AGTCGCTATATCCGG
1 AGTTGATATATCCGG
57731184 TTAAATCCCG
Statistics
Matches: 156, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 154 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
AGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCG
Done.