Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 203 of 378
Found at i:60059918 original size:19 final size:20
Alignment explanation
Indices: 60059896--60059939 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
60059886 AATTTTCCGG
* *
60059896 AAATATTTTTTTTTTCAAA-
1 AAATATGTTTTTATTCAAAC
60059915 AAAT-TGTTTTTATTCAAAC
1 AAATATGTTTTTATTCAAAC
60059934 AAATAT
1 AAATAT
60059940 AGTATGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 12 0.57
19 8 0.38
20 1 0.05
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (20 bp):
AAATATGTTTTTATTCAAAC
Found at i:60062351 original size:22 final size:23
Alignment explanation
Indices: 60062310--60062352 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
60062300 AATTAATAAC
60062310 ATATAATTGATATATCATATTTA
1 ATATAATTGATATATCATATTTA
60062333 ATAT-ATTAGATA-ATCATATT
1 ATATAATT-GATATATCATATT
60062353 GTTTTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.47
Consensus pattern (23 bp):
ATATAATTGATATATCATATTTA
Found at i:60063206 original size:11 final size:12
Alignment explanation
Indices: 60063173--60063211 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
60063163 TTAATTACTG
60063173 TAATTAAAATAT
1 TAATTAAAATAT
*
60063185 AATATTAAAATAT
1 TA-ATTAAAATAT
60063198 TAATT-AAATAT
1 TAATTAAAATAT
60063209 TAA
1 TAA
60063212 ATATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 9 0.38
12 4 0.17
13 11 0.46
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAATTAAAATAT
Found at i:60071510 original size:20 final size:20
Alignment explanation
Indices: 60071485--60071524 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
60071475 TGTATTTATA
* *
60071485 AAATTTTAGAATTTTTCATT
1 AAATTTTACAACTTTTCATT
60071505 AAATTTTACAACTTTTCATT
1 AAATTTTACAACTTTTCATT
60071525 TTAGTCCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (20 bp):
AAATTTTACAACTTTTCATT
Found at i:60074058 original size:27 final size:27
Alignment explanation
Indices: 60074020--60074282 Score: 355
Period size: 27 Copynumber: 9.7 Consensus size: 27
60074010 CGTACCTGAA
*
60074020 CCCTCATGTGATAAAATGATGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
*
60074047 CCCTCATGTGATAAAATGACGATTTTT
1 CCCTCATGTGATAAAATGACGATTTTG
*
60074074 CCCTCATGTGATAAAGTGACGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
*
60074101 CCCTCATGTGATAAAATGACAATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
* * **
60074128 CCCTTAGGTGATAAAATGAAAATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
* * *
60074155 CCCTAATATGATAAAATGACGATTTTA
1 CCCTCATGTGATAAAATGACGATTTTG
60074182 CCCTCATGTGATAAAATGACGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
* * * *
60074209 CCTTTAGGTGATAAAATGACAATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
* * *
60074236 CCCTTATGTGATAAAATGATGATTTTT
1 CCCTCATGTGATAAAATGACGATTTTG
*
60074263 CCCTTATGTGATAAAATGAC
1 CCCTCATGTGATAAAATGAC
60074283 TGAAATATCC
Statistics
Matches: 208, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 208 1.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (27 bp):
CCCTCATGTGATAAAATGACGATTTTG
Found at i:60074304 original size:27 final size:26
Alignment explanation
Indices: 60074274--60074373 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 26
60074264 CCTTATGTGA
60074274 TAAAATGACTGAAATATCCTCATAGGG
1 TAAAATGACTGAAATA-CCTCATAGGG
* *
60074301 TAAAATGATTGAGATACCCTCATAGGG
1 TAAAATGACTGAAATA-CCTCATAGGG
* ** * *
60074328 TAGAATGACCAAAATACCCCTGTAGGG
1 TAAAATGACTGAAATACCTC-ATAGGG
*
60074355 TAAAATGACTGTAATACCT
1 TAAAATGACTGAAATACCT
60074374 TGGTAAGGTA
Statistics
Matches: 57, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
26 3 0.05
27 54 0.95
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (26 bp):
TAAAATGACTGAAATACCTCATAGGG
Found at i:60084793 original size:51 final size:50
Alignment explanation
Indices: 60084687--60084825 Score: 140
Period size: 51 Copynumber: 2.7 Consensus size: 50
60084677 ATATGTGCAC
* * ** **
60084687 CCGTTTAAGACCATAGCTAGGC-TATGGCATCAGTGCAATGTGATATGTGTT
1 CCGTATAAGACCA-AGCT-GGCATATGGCATCGGTGTGACATGATATGTGTT
60084738 CCGTATAAGACC-AGCTGGGC-TATGGCATCGGTGTGACATGATAATGTGATT
1 CCGTATAAGACCAAGCT-GGCATATGGCATCGGTGTGACATGAT-ATGTG-TT
*
60084789 CCGTATAAGACCATATCTGGCATATGGCATCGGTGTG
1 CCGTATAAGACCA-AGCTGGCATATGGCATCGGTGTG
60084826 TGATGTGATC
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
49 24 0.32
50 5 0.07
51 25 0.33
52 3 0.04
53 18 0.24
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
CCGTATAAGACCAAGCTGGCATATGGCATCGGTGTGACATGATATGTGTT
Found at i:60084845 original size:46 final size:47
Alignment explanation
Indices: 60084754--60084875 Score: 122
Period size: 46 Copynumber: 2.5 Consensus size: 47
60084744 AAGACCAGCT
* * *
60084754 GGGCTATGGCATCGGTGTGACATGATAATGTGATTCCGTATAAGACCATA-TC
1 GGGCTATGGCATCGGTGTG---TG---ATGTGATTCCATAAAAGACCATAGTA
*
60084806 TGGCATATGGCATCGGTGTGTGATGTGA-TCCATAAAAGACCATAGTA
1 GGGC-TATGGCATCGGTGTGTGATGTGATTCCATAAAAGACCATAGTA
*
60084853 GGGCTATGGCTTCGGTGTGTGAT
1 GGGCTATGGCATCGGTGTGTGAT
60084876 ATGTGAAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
46 32 0.52
47 10 0.16
50 2 0.03
52 3 0.05
53 15 0.24
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (47 bp):
GGGCTATGGCATCGGTGTGTGATGTGATTCCATAAAAGACCATAGTA
Found at i:60087125 original size:33 final size:34
Alignment explanation
Indices: 60087083--60087146 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 34
60087073 AGTCTAATCT
* *
60087083 GGATTACCAGTCTAGGTTAAATCC-AATTAACTA
1 GGATTACCAGTCCAGGCTAAATCCTAATTAACTA
60087116 GGATTACCAGTCCAGGCTAAATCCTAATTAA
1 GGATTACCAGTCCAGGCTAAATCCTAATTAA
60087147 AACATATACT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 22 0.79
34 6 0.21
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (34 bp):
GGATTACCAGTCCAGGCTAAATCCTAATTAACTA
Found at i:60090906 original size:40 final size:39
Alignment explanation
Indices: 60090779--60090908 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
60090769 ATGCTGGAAA
* *
60090779 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
60090819 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
60090859 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
60090899 TTATATCCGG
1 TTATATCCGG
60090909 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:60098957 original size:40 final size:41
Alignment explanation
Indices: 60098912--60099021 Score: 131
Period size: 39 Copynumber: 2.8 Consensus size: 41
60098902 CTGGAAATTA
* * *
60098912 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCG-TAC
* *
60098953 -ATCCGGGCTAAGA-CCGAAGGC-ATTCGTGCGCGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCGTAC
60098991 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGC
60099022 ACGTGGTTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
38 5 0.08
39 28 0.46
40 28 0.46
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCGTAC
Found at i:60099035 original size:40 final size:40
Alignment explanation
Indices: 60098909--60099037 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
60098899 ATGCTGGAAA
*
60098909 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTA-GTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGG
* * * *
60098949 CTACATCCGGGCTAAGA-CCGAAGGCATTCGTGCGCGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
*
60098988 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
60099028 TTATATCCGG
1 TTATATCCGG
60099038 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
38 3 0.04
39 29 0.39
40 43 0.57
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
Found at i:60100635 original size:31 final size:31
Alignment explanation
Indices: 60100597--60100660 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
60100587 CCTTTTCATA
*
60100597 TTTCATATTTCATAATACTGTGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
60100628 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
60100659 TT
1 TT
60100661 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:60100898 original size:24 final size:24
Alignment explanation
Indices: 60100852--60100994 Score: 202
Period size: 24 Copynumber: 6.0 Consensus size: 24
60100842 GCTTTATCAT
*
60100852 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
60100877 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
60100901 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
60100924 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
60100948 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
60100972 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60100995 TAACTTCCTC
Statistics
Matches: 111, Mismatches: 3, Indels: 9
0.90 0.02 0.07
Matches are distributed among these distances:
23 25 0.23
24 73 0.66
25 13 0.12
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:60100931 original size:47 final size:48
Alignment explanation
Indices: 60100852--60100993 Score: 200
Period size: 47 Copynumber: 3.0 Consensus size: 48
60100842 GCTTTATCAT
*
60100852 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
**
60100901 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
60100948 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
60100994 TTAACTTCCT
Statistics
Matches: 87, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
46 2 0.02
47 42 0.48
48 31 0.36
49 12 0.14
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:60100946 original size:71 final size:72
Alignment explanation
Indices: 60100851--60100999 Score: 216
Period size: 71 Copynumber: 2.1 Consensus size: 72
60100841 TGCTTTATCA
*
60100851 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCAATAACTGGGGCATA
60100915 AGCCCTTT
65 AGCCCTTT
* **
60100923 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATA
60100986 AGCCCTTT
65 AGCCCTTT
60100994 T-TAACT
1 TATAACT
60101000 TCCTCCATCC
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
70 7 0.10
71 51 0.72
72 13 0.18
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:60101070 original size:20 final size:20
Alignment explanation
Indices: 60101045--60101104 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
60101035 TATGATTACC
60101045 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
60101065 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
60101085 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
60101105 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:60105694 original size:30 final size:31
Alignment explanation
Indices: 60105629--60105719 Score: 145
Period size: 31 Copynumber: 3.1 Consensus size: 31
60105619 CCTTTTCATA
*
60105629 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
60105660 TTTCATATTTCATATTACTGGGCCGAAG-CT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
60105690 TTTCATATTTCATA-T--TGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
60105718 TT
1 TT
60105720 ACTGTAAACG
Statistics
Matches: 58, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
27 10 0.17
28 4 0.07
29 1 0.02
30 16 0.28
31 27 0.47
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:60105975 original size:24 final size:24
Alignment explanation
Indices: 60105911--60106029 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
60105901 GCTTTATCAT
*
60105911 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
60105936 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
60105959 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
60105983 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
60106007 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60106030 TCACTTCTCC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
23 17 0.19
24 63 0.72
25 8 0.09
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:60106104 original size:20 final size:20
Alignment explanation
Indices: 60106079--60106138 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
60106069 TATGATTACC
60106079 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
60106099 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
60106119 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
60106139 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:60106213 original size:25 final size:25
Alignment explanation
Indices: 60106181--60106228 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60106171 ATACATAAAC
* * *
60106181 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
60106206 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
60106229 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:60109542 original size:37 final size:37
Alignment explanation
Indices: 60109483--60109591 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
60109473 AGCTCAGACG
* * *
60109483 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
60109520 AAATCTCCACACGTAGTCATCGGGTCTTACTCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
60109557 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
60109592 ATATATTTCC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:60109805 original size:46 final size:46
Alignment explanation
Indices: 60109737--60110017 Score: 145
Period size: 47 Copynumber: 6.0 Consensus size: 46
60109727 TATATATACA
* * *
60109737 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * *
60109783 CATCTCATACACGTTTCGCATTAGCCATTCGGCCTTACCACATAT-
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * * *
60109828 -AT-TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATG
1 CATCTCA--TACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * *
60109878 CATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACATAT-C
* *
60109924 GCATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACACATA-C
1 -CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * * *
60109971 GA-AT-ATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
1 CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATAT
60110018 ATATACGGGT
Statistics
Matches: 201, Mismatches: 18, Indels: 30
0.81 0.07 0.12
Matches are distributed among these distances:
43 3 0.01
44 2 0.01
45 11 0.05
46 42 0.21
47 126 0.63
48 2 0.01
49 12 0.06
51 2 0.01
52 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
Found at i:60109863 original size:47 final size:47
Alignment explanation
Indices: 60109801--60110183 Score: 568
Period size: 47 Copynumber: 8.1 Consensus size: 47
60109791 ACACGTTTCG
* * * **
60109801 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
60109848 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
60109895 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
60109942 CATTGGCCATTCGGCCTTATCACACATACGAATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
60109989 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
* *
60110040 CATTGGCCATTCGGGCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
60110087 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
60110134 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
60110181 CAT
1 CAT
60110184 AAAATCCTAA
Statistics
Matches: 309, Mismatches: 23, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 267 0.86
51 42 0.14
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:60109919 original size:22 final size:22
Alignment explanation
Indices: 60109891--60109965 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
60109881 GTTCACATTC
60109891 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
60109913 ATCACATAT-ACGCATGTTC-ACATT
1 ATCACAT-TGGC-CA--TTCGGCCTT
60109937 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
60109960 ATCACA
1 ATCACA
60109966 CATACGAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.43
23 6 0.15
24 6 0.15
25 11 0.28
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:60110039 original size:192 final size:188
Alignment explanation
Indices: 60109801--60110183 Score: 613
Period size: 192 Copynumber: 2.0 Consensus size: 188
60109791 ACACGTTTCG
*
60109801 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACATATATTCAGGTTCACATTCATCACATTGGCCATTCGGCCTT
* * * * * *
60109866 ATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACGCATGTT
66 ATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
*
60109931 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACGAATATTCACATTCATCA
131 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACGAATATTCACATCCATCA
* *
60109989 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTAGCCATTCGGCCTTA-C-CACATATAT-T-CAGGTTCACATTCATCACATTGGCCATTCGG
*
60110054 GCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACACA
62 CCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACACA
* *
60110119 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
127 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGAATATTCACATCCATCA
60110181 CAT
1 CAT
60110184 AAAATCCTAA
Statistics
Matches: 178, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
188 18 0.10
189 1 0.01
190 9 0.05
191 1 0.01
192 149 0.84
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (188 bp):
CATTAGCCATTCGGCCTTACCACATATATTCAGGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
CACATTCATCACATTGGCCATTCGGCCTTATCACACATACGAATATTCACATCCATCA
Found at i:60110069 original size:145 final size:144
Alignment explanation
Indices: 60109801--60110161 Score: 552
Period size: 145 Copynumber: 2.5 Consensus size: 144
60109791 ACACGTTTCG
* * *
60109801 CATTAGCCATTCGGCCTTACCACATATATTC-ATGTTCACATTCATCACATTGGCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACACATA--CAATGTTCACATTCATCACATTGGCCATTCGGCCT
* * * *
60109865 TAT--CTC--ATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACGC
64 TATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
*
60109926 ATGTTCACATTCATCA
129 ATGTTCACATCCATCA
*
60109942 CATTGGCCATTCGGCCTTATCACACATACGAATATTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATAC-AATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
60110007 ATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGGCTTATCACACATACGCA
65 ATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
60110072 TGTTCACATCCATCA
130 TGTTCACATCCATCA
60110087 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACA-ATGTTCACATTCATCACATTGGCCATTCGGCCTT
60110152 ATCACACATA
65 ATCACACATA
60110162 CGCATGTTCA
Statistics
Matches: 201, Mismatches: 12, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
139 1 0.00
141 60 0.30
143 2 0.01
144 1 0.00
145 137 0.68
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (144 bp):
CATTGGCCATTCGGCCTTATCACACATACAATGTTCACATTCATCACATTGGCCATTCGGCCTTA
TCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
GTTCACATCCATCA
Found at i:60124251 original size:27 final size:26
Alignment explanation
Indices: 60124211--60124322 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
60124201 AGGAAGCGTC
*
60124211 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
60124238 CTGGTGGCTTTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
60124265 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
60124293 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
60124319 CTGG
1 CTGG
60124323 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 5, Indels: 11
0.82 0.05 0.12
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 17 0.23
29 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:60124315 original size:54 final size:54
Alignment explanation
Indices: 60124211--60124322 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
60124201 AGGAAGCGTC
* *
60124211 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * * *
60124265 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
60124319 CTGG
1 CTGG
60124323 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:60140828 original size:46 final size:46
Alignment explanation
Indices: 60140778--60140953 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
60140768 TGGTTGAGCA
60140778 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60140824 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60140869 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60140917 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60140954 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60140934 original size:93 final size:93
Alignment explanation
Indices: 60140775--60140946 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60140765 GGATGGTTGA
* *
60140775 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60140840 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60140868 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60140933 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
60140947 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60148409 original size:46 final size:46
Alignment explanation
Indices: 60148359--60148534 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
60148349 TGGTTGAGCA
60148359 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60148405 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60148450 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60148498 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60148535 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60148515 original size:93 final size:93
Alignment explanation
Indices: 60148356--60148527 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60148346 GGATGGTTGA
* *
60148356 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60148421 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60148449 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60148514 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
60148528 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60157495 original size:40 final size:40
Alignment explanation
Indices: 60157450--60157617 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
60157440 CGGAATATAA
60157450 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
60157490 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
60157530 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
60157570 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
60157610 CCGGATAT
1 CCGGATAT
60157618 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60157600 original size:80 final size:80
Alignment explanation
Indices: 60157466--60157615 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
60157456 ATAACCACGT
* *
60157466 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
60157531 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
60157546 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
60157609 CCCGGAT
64 CCCGGAT
60157616 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:60165461 original size:38 final size:38
Alignment explanation
Indices: 60165414--60165561 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
60165404 TATAACACGT
*
60165414 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATCTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATCTC
* *
60165452 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCA-CTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGA--TAG-AATCTC
* * *
60165492 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATCT-C
* *
60165531 AGCATAATTGTCTTCGGG-CTTAGCCCGGATA
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATA
60165562 TCATTCAATT
Statistics
Matches: 92, Mismatches: 10, Indels: 15
0.79 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 29 0.32
39 16 0.17
40 45 0.49
41 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (38 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATCTC
Found at i:60168445 original size:13 final size:13
Alignment explanation
Indices: 60168410--60168451 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
60168400 TATATTTTAC
60168410 TATTTAATTTAAT
1 TATTTAATTTAAT
* *
60168423 CATTGT-ATTTTAT
1 TATT-TAATTTAAT
60168436 TATTTAATTTAAT
1 TATTTAATTTAAT
60168449 TAT
1 TAT
60168452 GCATGGCCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
12 1 0.04
13 21 0.91
14 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (13 bp):
TATTTAATTTAAT
Found at i:60169741 original size:143 final size:141
Alignment explanation
Indices: 60169556--60169850 Score: 572
Period size: 143 Copynumber: 2.1 Consensus size: 141
60169546 TGAGTTAAAT
60169556 TTCGGCCATGCATGTTGTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATG
1 TTCGGCCATGCATGTTGTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATG
60169621 AGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTG
66 AGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG-G
60169686 TGTGCATGAGTA
130 TGTGCATGAGTA
60169698 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGT-TTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
60169763 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGG
65 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGG
60169828 TGTGCATGAGTA
130 TGTGCATGAGTA
60169840 TTCGGCCATGC
1 TTCGGCCATGC
60169851 TATAGAATTT
Statistics
Matches: 152, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
142 42 0.28
143 110 0.72
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATG
AGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGGT
GTGCATGAGTA
Found at i:60170575 original size:27 final size:27
Alignment explanation
Indices: 60170539--60170590 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
60170529 AAATATAAGG
*
60170539 CACTAAGTGTGCATGCTGGAAAAATGA
1 CACTAAGTGTGCAAGCTGGAAAAATGA
*
60170566 CACTATGTGTGCAAGCTGGAAAAAT
1 CACTAAGTGTGCAAGCTGGAAAAAT
60170591 ACGGCACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (27 bp):
CACTAAGTGTGCAAGCTGGAAAAATGA
Found at i:60170611 original size:29 final size:27
Alignment explanation
Indices: 60170524--60170598 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
60170514 TATATGGCGT
*
60170524 GCTGGAAATATAAGGCACTAAGTGTGCA
1 GCTGGAAAAAT-AGGCACTAAGTGTGCA
* *
60170552 TGCTGGAAAAAT-GACACTATGTGTGCAA
1 -GCTGGAAAAATAGGCACTAAGTGTGC-A
60170580 GCTGGAAAAATACGGCACT
1 GCTGGAAAAATA-GGCACT
60170599 GGGTGTGCGA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 23 0.59
28 1 0.03
29 15 0.38
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.21
Consensus pattern (27 bp):
GCTGGAAAAATAGGCACTAAGTGTGCA
Found at i:60177698 original size:143 final size:141
Alignment explanation
Indices: 60177490--60177784 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
60177480 TGAGTTAAAT
*
60177490 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
60177555 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
60177620 GTGTGCATGAGTA
129 GTGTGCATGAGTA
60177633 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
60177698 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
60177763 GTGCATGAGTA
131 GTGCATGAGTA
60177774 TTCGGCCATGC
1 TTCGGCCATGC
60177785 TATAGAATTT
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 122 0.81
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:60178512 original size:29 final size:29
Alignment explanation
Indices: 60178464--60178541 Score: 111
Period size: 29 Copynumber: 2.7 Consensus size: 29
60178454 ATATGGCGCG
* *
60178464 TGCTGGAAATATAAGGCACTAAGTGTGCA
1 TGCTGGAAAAATACGGCACTAAGTGTGCA
* *
60178493 TGCTGGAAAAATACGACACTATGTGTGCA
1 TGCTGGAAAAATACGGCACTAAGTGTGCA
*
60178522 AGCTGGAAAAATACGGCACT
1 TGCTGGAAAAATACGGCACT
60178542 GGGTGTGCGA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.22
Consensus pattern (29 bp):
TGCTGGAAAAATACGGCACTAAGTGTGCA
Found at i:60180113 original size:42 final size:40
Alignment explanation
Indices: 60180033--60180174 Score: 160
Period size: 41 Copynumber: 3.5 Consensus size: 40
60180023 GAGCTTGGTA
* *
60180033 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTG-TCATAACCGGACTTAGTT
60180074 TCGAAGGGCTTTTTAGAGCCAGTGTCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGTCATAACCGGACTTAGTT
* * * * * *
60180116 CCGAAGGGCCTTCGAGCCAGTAGTC-TAATCCGGGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-GTCATAA-CCGGACTTAGTT
60180157 TCGAAGGGCTTTTGAGCC
1 TCGAAGGGCTTTTGAGCC
60180175 GGTGCTAAGA
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
40 11 0.13
41 38 0.44
42 28 0.33
43 9 0.10
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
TCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGTT
Found at i:60180165 original size:41 final size:39
Alignment explanation
Indices: 60180013--60180182 Score: 139
Period size: 41 Copynumber: 4.2 Consensus size: 39
60180003 GCTAATCGGG
* *
60180013 GTCTAAATCCGAGCTTGGTATCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAACTTAGT-TCGAAGGGCTTTTGAGCCAGT
60180054 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAACTTAG-TTCGAAGGGC-TTTT-GAGCCAGT
* * *
60180097 GTCATAA-CCGGACTTAGTTCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAACTTAGTT-CGAAGGGCTTTTGAGCCAGT
** * *
60180137 AGTCTAATCCGGGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAACTTAGT-TCGAAGGGCTTTTGAGCCAGT
60180178 G-CTAA
1 GTCTAA
60180183 GAGTCAGACT
Statistics
Matches: 108, Mismatches: 10, Indels: 24
0.76 0.07 0.17
Matches are distributed among these distances:
39 7 0.06
40 14 0.13
41 51 0.47
42 23 0.21
43 9 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (39 bp):
GTCTAATCCGAACTTAGTTCGAAGGGCTTTTGAGCCAGT
Found at i:60182970 original size:35 final size:34
Alignment explanation
Indices: 60182859--60182972 Score: 131
Period size: 35 Copynumber: 3.3 Consensus size: 34
60182849 CAAGATAACT
* *
60182859 TCACATATAACCGAATATGCAAGTTCAATATAAGC
1 TCACATGTAATCGAATAT-CAAGTTCAATATAAGC
* * *
60182894 TCACAAT-TAATCAAATACTCAAGTTCAATAAAACC
1 TCAC-ATGTAATCGAATA-TCAAGTTCAATATAAGC
*
60182929 TCACATGTAGTCGAATATACAAGTTCAATATAAGC
1 TCACATGTAATCGAATAT-CAAGTTCAATATAAGC
60182964 TCACATGTA
1 TCACATGTA
60182973 CTTACCTATG
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
34 3 0.04
35 61 0.91
36 3 0.04
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (34 bp):
TCACATGTAATCGAATATCAAGTTCAATATAAGC
Found at i:60183083 original size:15 final size:15
Alignment explanation
Indices: 60183063--60183091 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
60183053 CATAGAGTTG
60183063 AAATAAATCACCGGA
1 AAATAAATCACCGGA
60183078 AAATAAATCACCGG
1 AAATAAATCACCGG
60183092 CATAAAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.14
Consensus pattern (15 bp):
AAATAAATCACCGGA
Found at i:60185823 original size:8 final size:8
Alignment explanation
Indices: 60185810--60185838 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
60185800 TTGAATGAAA
60185810 TGAATGGT
1 TGAATGGT
60185818 TGAATGGT
1 TGAATGGT
60185826 TGAATGGT
1 TGAATGGT
60185834 TGAAT
1 TGAAT
60185839 TTGTATTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (8 bp):
TGAATGGT
Found at i:60193880 original size:24 final size:24
Alignment explanation
Indices: 60193842--60193934 Score: 82
Period size: 24 Copynumber: 3.9 Consensus size: 24
60193832 TACCGATGTA
* *
60193842 TCAGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCATTAGAGCTTACTGTTT
* *
60193866 TCAGCTCATTGGAGCTTACT-ATT
1 TCAGCTCATTAGAGCTTACTGTTT
* * * *
60193889 TCTAGCTCGTCAAAGCTTACCG-TT
1 TC-AGCTCATTAGAGCTTACTGTTT
*
60193913 TCAGCTCAGTAGAGCTTACTGT
1 TCAGCTCATTAGAGCTTACTGT
60193935 CCGTTAGCTC
Statistics
Matches: 52, Mismatches: 14, Indels: 6
0.72 0.19 0.08
Matches are distributed among these distances:
23 18 0.35
24 34 0.65
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (24 bp):
TCAGCTCATTAGAGCTTACTGTTT
Found at i:60193967 original size:25 final size:25
Alignment explanation
Indices: 60193915--60193970 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
60193905 TTACCGTTTC
* *
60193915 AGCTCAGTAGAGCTTACTGTCCGTT
1 AGCTCAGGAGAGCTTACTGTCCGAT
*
60193940 AGCTCAGGAGGAGCTTACTGTTC-AT
1 AGCTCAGGA-GAGCTTACTGTCCGAT
60193965 AGCTCA
1 AGCTCA
60193971 AAAGAGTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (25 bp):
AGCTCAGGAGAGCTTACTGTCCGAT
Found at i:60196670 original size:48 final size:48
Alignment explanation
Indices: 60196616--60196846 Score: 224
Period size: 48 Copynumber: 4.9 Consensus size: 48
60196606 CACATAGTAG
* * *
60196616 GATGCCAATTCCATATCCCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
*
60196664 GATGCCAATGCCATGTCCCAGACATGGTCTAACATGGGATCATGCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA--CATATC
* * *** * *
60196714 GAAGCCGAT---A-G-CCCAG-CTATGGTCTTACACAATG-TCTCATATT
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACA-TGGGATCACATATC
* * * * * *
60196757 GATGCCAATGCCATGTCCCATAGATGGTCTTAGATGGGGTCACATTTT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
60196805 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
60196847 TGCATGTCCC
Statistics
Matches: 146, Mismatches: 26, Indels: 22
0.75 0.13 0.11
Matches are distributed among these distances:
43 12 0.08
44 1 0.01
45 17 0.12
46 3 0.02
47 3 0.02
48 97 0.66
50 13 0.09
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:60197285 original size:13 final size:13
Alignment explanation
Indices: 60197267--60197291 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60197257 TTCAATTTAG
60197267 ATTTTTACTACTC
1 ATTTTTACTACTC
60197280 ATTTTTACTACT
1 ATTTTTACTACT
60197292 TTCACAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTTTTACTACTC
Found at i:60202115 original size:39 final size:40
Alignment explanation
Indices: 60202031--60202115 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
60202021 ACTTAATTCA
* * *
60202031 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
* *
60202071 CCAGCATGAAGCCAGCGGGTCTCT-AACCCGGATGCAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
*
60202110 TCAGCA
1 CCAGCA
60202116 CAATTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
Found at i:60202240 original size:45 final size:46
Alignment explanation
Indices: 60202186--60202294 Score: 150
Period size: 47 Copynumber: 2.3 Consensus size: 46
60202176 TGCACACTTT
* *
60202186 TCACAATTGGTCATTCGGCCTTATCACATAT-TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATAACACTTACACAT-TCA
*
60202232 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATA-ACACTTACACATTCA
60202279 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
60202295 ATCTTAAGCT
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 25 0.44
46 5 0.09
47 27 0.47
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATAACACTTACACATTCA
Found at i:60204655 original size:4 final size:4
Alignment explanation
Indices: 60204646--60204670 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
60204636 CTTTTTCCTT
60204646 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
60204671 GTCATATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:60204898 original size:22 final size:20
Alignment explanation
Indices: 60204858--60204898 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
60204848 AGTCCTATTA
*
60204858 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
60204878 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
60204899 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:60206961 original size:40 final size:42
Alignment explanation
Indices: 60206912--60207133 Score: 173
Period size: 40 Copynumber: 5.5 Consensus size: 42
60206902 GACTCGCTCG
* * *
60206912 ATTGTCTTCGGGACATT-GCCCGG-TTATAGTGATTCACAC-A
1 ATTGCCTTCGGGACATTAGCCCGGATT-TAGTAACTCACACGA
*
60206952 ATTGCCTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACGA
1 ATTGCCTTCGGGACATTAGCCCGGATTTAGTAACTCACACGA
* * * *
60206993 A-TGCCTTCGGGAC-TTAACCCGGTTTTGGTAACTCGCACGA
1 ATTGCCTTCGGGACATTAGCCCGGATTTAGTAACTCACACGA
* * * *
60207033 A-TGCCTTCGGGAC-TTAACCCGGTTTTGGTAACTCGCAC-A
1 ATTGCCTTCGGGACATTAGCCCGGATTTAGTAACTCACACGA
* * *
60207072 AATGCCTTCGGGA-ATT-GACCCGGATTTAGTCACTTAGCAC-A
1 ATTGCCTTCGGGACATTAG-CCCGGATTTAGTAACTCA-CACGA
**
60207113 AAAGCCTTCGGGAC-TTAGCCC
1 ATTGCCTTCGGGACATTAGCCC
60207134 AGACACCATT
Statistics
Matches: 158, Mismatches: 14, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
39 5 0.03
40 127 0.80
41 25 0.16
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (42 bp):
ATTGCCTTCGGGACATTAGCCCGGATTTAGTAACTCACACGA
Found at i:60207015 original size:80 final size:77
Alignment explanation
Indices: 60206903--60207133 Score: 212
Period size: 80 Copynumber: 2.9 Consensus size: 77
60206893 GGATATAGCG
* * * * * *
60206903 ACTCGCTCGATTGTCTTCGGGACATTGCCCGGTTATAGTGATTCACACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGAC-TTACCCGGTT-TAGTAATTCACACAA-TGCCTTCGGGACTT
60206968 AGCCCGGATTTAGTA
63 AGCCCGGATTTAGTA
* * *
60206983 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACGAATGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGGACTT-ACCCGG-TTTAGTAATTCACAC-AATGCCTTCGGGACTT
* * *
60207048 AACCCGGTTTTGGTA
63 AGCCCGGATTTAGTA
* * * *
60207063 ACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTT-AGCACAAAAGCCTTCGGGAC
1 ACTCGCACGAATGCCTTCGGGACTT-ACCCGG-TTTAGT-AATTCA-CAC-AATGCCTTCGGGAC
60207127 TTAGCCC
61 TTAGCCC
60207134 AGACACCATT
Statistics
Matches: 123, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 2 0.02
80 93 0.76
81 28 0.23
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (77 bp):
ACTCGCACGAATGCCTTCGGGACTTACCCGGTTTAGTAATTCACACAATGCCTTCGGGACTTAGC
CCGGATTTAGTA
Found at i:60209043 original size:93 final size:93
Alignment explanation
Indices: 60208930--60209098 Score: 284
Period size: 93 Copynumber: 1.8 Consensus size: 93
60208920 GCCCATAAGT
* *
60208930 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60208995 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
60209023 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
60209088 TGAGTTCGGAT
66 CGAGCTCGGAT
60209099 ACCCAAATAT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:60209097 original size:46 final size:46
Alignment explanation
Indices: 60208922--60209097 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
60208912 TGTAACACGC
* * *
60208922 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
60208968 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
60209014 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
60209061 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
60209098 TACCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:60218967 original size:27 final size:27
Alignment explanation
Indices: 60218925--60219089 Score: 99
Period size: 27 Copynumber: 6.2 Consensus size: 27
60218915 GATCGTTAAG
*
60218925 ACCC-CGATTTGTAAAATTATCAAAAT
1 ACCCTCGATTTGTAAAATTACCAAAAT
* * *
60218951 ACTCTCGATTTATAAAATTACCGAAAT
1 ACCCTCGATTTGTAAAATTACCAAAAT
**
60218978 ACCCTCGGA-TTGTAAAATTA-CTGAAT
1 ACCCTC-GATTTGTAAAATTACCAAAAT
* * *
60219004 GCCC-CTAATTTTTAAAATTACCAAAAT
1 ACCCTC-GATTTGTAAAATTACCAAAAT
* * * *
60219031 ACCCTTG-TAGTGTAAACTTACCAACAT
1 ACCCTCGAT-TTGTAAAATTACCAAAAT
* * * *
60219058 ACCTTTG-TAGTGTAAAATTACCGAAAT
1 ACCCTCGAT-TTGTAAAATTACCAAAAT
60219085 ACCCT
1 ACCCT
60219090 TGTAGGGTAA
Statistics
Matches: 107, Mismatches: 26, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
25 2 0.02
26 21 0.20
27 82 0.77
28 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (27 bp):
ACCCTCGATTTGTAAAATTACCAAAAT
Found at i:60219092 original size:27 final size:27
Alignment explanation
Indices: 60218963--60219102 Score: 124
Period size: 27 Copynumber: 5.2 Consensus size: 27
60218953 TCTCGATTTA
* * *
60218963 TAAAATTACCGAAATACCCTCGGATTG
1 TAAAATTACCGAAATACCCTTGTAGTG
* * * * * *
60218990 TAAAATTACTG-AATGCCCCT-AATTTT
1 TAAAATTACCGAAATACCCTTGTA-GTG
*
60219016 TAAAATTACCAAAATACCCTTGTAGTG
1 TAAAATTACCGAAATACCCTTGTAGTG
* *
60219043 TAAACTTACC-AACATACCTTTGTAGTG
1 TAAAATTACCGAA-ATACCCTTGTAGTG
*
60219070 TAAAATTACCGAAATACCCTTGTAGGG
1 TAAAATTACCGAAATACCCTTGTAGTG
60219097 TAAAAT
1 TAAAAT
60219103 AACTGTTTTG
Statistics
Matches: 90, Mismatches: 18, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
25 1 0.01
26 19 0.21
27 67 0.74
28 3 0.03
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTTGTAGTG
Found at i:60219510 original size:22 final size:22
Alignment explanation
Indices: 60219462--60219521 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
60219452 GTAATCTGAT
60219462 TATGGCTCTGTGCCAACATAAA
1 TATGGCTCTGTGCCAACATAAA
* * * * *
60219484 AATGGCTCTGTGCCATCTTGAC
1 TATGGCTCTGTGCCAACATAAA
*
60219506 TATGGCTTTGTGCCAA
1 TATGGCTCTGTGCCAA
60219522 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (22 bp):
TATGGCTCTGTGCCAACATAAA
Found at i:60219653 original size:32 final size:32
Alignment explanation
Indices: 60219617--60219689 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 32
60219607 ATTACTGTCG
*
60219617 CTGATGGCTATGTGCCAAACATAATACAGTTA
1 CTGATGGCTATGTGCCAAACATAATACAGCTA
* ** *
60219649 CTGATGGCTTTGTGCCAATTATAATACTGCTA
1 CTGATGGCTATGTGCCAAACATAATACAGCTA
*
60219681 CTGAAGGCT
1 CTGATGGCT
60219690 TAGAGCTGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (32 bp):
CTGATGGCTATGTGCCAAACATAATACAGCTA
Found at i:60219690 original size:32 final size:31
Alignment explanation
Indices: 60219588--60219690 Score: 89
Period size: 32 Copynumber: 3.2 Consensus size: 31
60219578 ATATTTGCCC
* * * *
60219588 AAGGCTGTGTGCCGATTATATTACTGTCGCTG
1 AAGGCTTTGTGCCAATTATAATACTGT-ACTG
* * ** *
60219620 ATGGCTATGTGCCAAACATAATACAGTTACTG
1 AAGGCTTTGTGCCAATTATAATACTG-TACTG
*
60219652 ATGGCTTTGTGCCAATTATAATACTGCTACTG
1 AAGGCTTTGTGCCAATTATAATACTG-TACTG
60219684 AAGGCTT
1 AAGGCTT
60219691 AGAGCTGCAT
Statistics
Matches: 56, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
32 55 0.98
33 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.33
Consensus pattern (31 bp):
AAGGCTTTGTGCCAATTATAATACTGTACTG
Found at i:60222412 original size:27 final size:27
Alignment explanation
Indices: 60222343--60222414 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
60222333 GTAGGCTACT
*
60222343 ATTACTGAAATACCCCTGTAGGATAGA
1 ATTACTGAAATACCCTTGTAGGATAGA
* * *
60222370 ATTACTAAAATGCCCTTGTAGGGTAGA
1 ATTACTGAAATACCCTTGTAGGATAGA
*
60222397 ATTATTGAAATACCCTTG
1 ATTACTGAAATACCCTTG
60222415 GTTTACAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.31
Consensus pattern (27 bp):
ATTACTGAAATACCCTTGTAGGATAGA
Found at i:60222464 original size:27 final size:27
Alignment explanation
Indices: 60222431--60222562 Score: 162
Period size: 27 Copynumber: 4.9 Consensus size: 27
60222421 AAAATTATTG
60222431 AATACCCTCGATTAGTAAAATTACCAA
1 AATACCCTCGATTAGTAAAATTACCAA
*
60222458 AATACCCTCGATTAGCAAAATTACCAA
1 AATACCCTCGATTAGTAAAATTACCAA
* * *
60222485 AGTACCC-CTAGTTTGTAAAATTACCAA
1 AATACCCTCGA-TTAGTAAAATTACCAA
* *
60222512 AATATCCCTAG-TTTGTAAAATTACCAA
1 AATA-CCCTCGATTAGTAAAATTACCAA
60222539 AATACCCTCGACTT-GTAAAATTAC
1 AATACCCTCGA-TTAGTAAAATTAC
60222563 TGAAACACCC
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.08
27 79 0.87
28 5 0.05
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
AATACCCTCGATTAGTAAAATTACCAA
Found at i:60222586 original size:54 final size:52
Alignment explanation
Indices: 60222431--60222600 Score: 171
Period size: 54 Copynumber: 3.2 Consensus size: 52
60222421 AAAATTATTG
*
60222431 AATACCCTCGATTAGTAAAATTACCAAAATACCCTCGATTAGCAAAATTACCAA
1 AATACCCTCGATT-GTAAAATTACCAAAATACCCT-GATTTGCAAAATTACCAA
* * * *
60222485 AGTACCCCTAGTTTGTAAAATTACCAAAATATCCCT-AGTTTGTAAAATTACCAA
1 AATA-CCCTCGATTGTAAAATTACCAAAATA-CCCTGA-TTTGCAAAATTACCAA
** * * **
60222539 AATACCCTCGACTTGTAAAATTACTGAAACACCCCTGATTTGGAAAATTACTGA
1 AATACCCTCGA-TTGTAAAATTACCAAAATA-CCCTGATTTGCAAAATTACCAA
60222593 AATACCCT
1 AATACCCT
60222601 TAACTTTCAA
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
53 6 0.06
54 78 0.81
55 12 0.12
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (52 bp):
AATACCCTCGATTGTAAAATTACCAAAATACCCTGATTTGCAAAATTACCAA
Found at i:60222596 original size:81 final size:80
Alignment explanation
Indices: 60222431--60222600 Score: 202
Period size: 81 Copynumber: 2.1 Consensus size: 80
60222421 AAAATTATTG
* * *
60222431 AATACCCTCGATTAGTAAAATTACCAAAATACCCTCGATTAGCAAAATTACCAAAGTACCCCTAG
1 AATACCCTAG-TTTGTAAAATTACCAAAATACCCTCGATTAGCAAAATTACCAAAGCACCCCTAG
*
60222496 TTTGTAAAATTACCAA
65 TTTGGAAAATTACCAA
* *
60222512 AATATCCCTAGTTTGTAAAATTACCAAAATACCCTCGACTT-GTAAAATTACTGAAA-CACCCCT
1 AATA-CCCTAGTTTGTAAAATTACCAAAATACCCTCGA-TTAGCAAAATTAC-CAAAGCACCCCT
**
60222575 -GATTTGGAAAATTACTGA
63 AG-TTTGGAAAATTACCAA
60222593 AATACCCT
1 AATACCCT
60222601 TAACTTTCAA
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
80 5 0.06
81 62 0.81
82 10 0.13
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (80 bp):
AATACCCTAGTTTGTAAAATTACCAAAATACCCTCGATTAGCAAAATTACCAAAGCACCCCTAGT
TTGGAAAATTACCAA
Found at i:60222658 original size:27 final size:27
Alignment explanation
Indices: 60222396--60222662 Score: 148
Period size: 27 Copynumber: 9.9 Consensus size: 27
60222386 TGTAGGGTAG
* *
60222396 AATTATTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGGTTTGCAA
* * * * *
60222423 AATTATTG-AATACCCTCGATTAGTAA
1 AATTACTGAAATACCCTTGGTTTGCAA
** * * *
60222449 AATTACCAAAATACCCTCGATTAGCAA
1 AATTACTGAAATACCCTTGGTTTGCAA
* * * *
60222476 AATTAC-CAAAGTACCCCTAGTTTGTAA
1 AATTACTGAAA-TACCCTTGGTTTGCAA
** * *
60222503 AATTACCAAAATATCCC-TAGTTTGTAA
1 AATTACTGAAATA-CCCTTGGTTTGCAA
** * ** *
60222530 AATTACCAAAATACCCTCGACTTGTAA
1 AATTACTGAAATACCCTTGGTTTGCAA
* * * *
60222557 AATTACTGAAACACCCCTGATTTGGAA
1 AATTACTGAAATACCCTTGGTTTGCAA
**
60222584 AATTACTGAAATACCCTTAACTTT-CAAA
1 AATTACTGAAATACCCTT-GGTTTGC-AA
*
60222612 AATTA-TAGAAATACCATTGGTTTGCAA
1 AATTACT-GAAATACCCTTGGTTTGCAA
*
60222639 AATTATTGAAATACCCTTGGTTTG
1 AATTACTGAAATACCCTTGGTTTG
60222663 TAGATTTACC
Statistics
Matches: 193, Mismatches: 37, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
26 24 0.12
27 141 0.73
28 28 0.15
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGGTTTGCAA
Found at i:60222967 original size:41 final size:41
Alignment explanation
Indices: 60222922--60223044 Score: 183
Period size: 41 Copynumber: 3.0 Consensus size: 41
60222912 GGAGGAAGAA
* *
60222922 ATTGAGGATCGCATGGTTGCTTGAAGACTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
*
60222963 ATTGAGAATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * * *
60223004 ATTAAGGGTCGTATGGTTGCTTGACGGCCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
60223045 GTGACTTTTA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.26
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:60223228 original size:22 final size:22
Alignment explanation
Indices: 60223203--60223250 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
60223193 TGGCTTTGCA
60223203 CCAACCT-ACATATGGCTCTGTG
1 CCAACCTGA-ATATGGCTCTGTG
* *
60223225 CCAACCTGATTATGGCTGTGTG
1 CCAACCTGAATATGGCTCTGTG
60223247 CCAA
1 CCAA
60223251 ACGTATTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (22 bp):
CCAACCTGAATATGGCTCTGTG
Found at i:60226423 original size:48 final size:48
Alignment explanation
Indices: 60226352--60226575 Score: 213
Period size: 48 Copynumber: 4.7 Consensus size: 48
60226342 TGAATTGCCA
** * * * *
60226352 ATGCCATGTTTCAAACATGGTCTTACATTGGCTCACATGTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGCCG
* *
60226400 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--TGTCTTAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTC--GAGGCCG
* * * *
60226448 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGT-TAC-ATTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGT-CGA-GGCCG
* * ** *
60226496 ATCCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGCCG
* *
60226544 ATGCTATGTCCTAGACATGGTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
60226576 ACACATATCA
Statistics
Matches: 146, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
46 4 0.03
47 1 0.01
48 137 0.94
49 2 0.01
50 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGCCG
Found at i:60233121 original size:45 final size:45
Alignment explanation
Indices: 60233055--60233269 Score: 262
Period size: 45 Copynumber: 4.9 Consensus size: 45
60233045 TGTACAGTAC
*
60233055 TATTCGGGCCTTTGAGTCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
60233100 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* * *
60233145 TATTCGGGCCTTTAAGCCTAGCAGGCTATAATACTGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* * *
60233190 TATTCGGGCC-TCGAGCCTAGCAGGCGA-AATACCGGTGA-ATGA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-AT
** * * *
60233232 -ATTCGGGTTTTTAAACCTAGCAGGCT-GAATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
60233270 TTTGATAAAA
Statistics
Matches: 150, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
41 7 0.05
42 24 0.16
43 11 0.07
44 14 0.09
45 94 0.63
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:60238749 original size:18 final size:19
Alignment explanation
Indices: 60238726--60238765 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
60238716 TAAGTGTTTA
60238726 AAGTGTTT-TGTGTTTAAT
1 AAGTGTTTATGTGTTTAAT
60238744 AAGTGTTTAAATGTGTTTAAT
1 AAGTGTTT--ATGTGTTTAAT
60238765 A
1 A
60238766 TGTTTGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
21 11 0.58
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (19 bp):
AAGTGTTTATGTGTTTAAT
Found at i:60238760 original size:21 final size:22
Alignment explanation
Indices: 60238734--60238787 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
60238724 TAAAGTGTTT
60238734 TGTGTTTAATAAG-TGTTTAAA
1 TGTGTTTAATAAGTTGTTTAAA
* *
60238755 TGTGTTTAATATGTTTGTTTTAA
1 TGTGTTTAATAAG-TTGTTTAAA
60238778 TGTGTTTAAT
1 TGTGTTTAAT
60238788 TGCAAGTGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 12 0.41
23 17 0.59
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.56
Consensus pattern (22 bp):
TGTGTTTAATAAGTTGTTTAAA
Found at i:60238785 original size:9 final size:9
Alignment explanation
Indices: 60238719--60238787 Score: 51
Period size: 9 Copynumber: 8.0 Consensus size: 9
60238709 TTTAAGATAA
*
60238719 GTGTTTAAA
1 GTGTTTAAT
60238728 GTGTTT--T
1 GTGTTTAAT
60238735 GTGTTTAAT
1 GTGTTTAAT
60238744 AAGTGTTTAAAT
1 --GTGTTT-AAT
60238756 GTGTTTAAT
1 GTGTTTAAT
*
60238765 ATG-TT--T
1 GTGTTTAAT
60238771 GT-TTTAAT
1 GTGTTTAAT
60238779 GTGTTTAAT
1 GTGTTTAAT
60238788 TGCAAGTGTC
Statistics
Matches: 48, Mismatches: 3, Indels: 18
0.70 0.04 0.26
Matches are distributed among these distances:
6 4 0.08
7 6 0.12
8 5 0.10
9 18 0.38
10 6 0.12
11 6 0.12
12 3 0.06
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (9 bp):
GTGTTTAAT
Found at i:60243334 original size:40 final size:40
Alignment explanation
Indices: 60243208--60243335 Score: 116
Period size: 40 Copynumber: 3.2 Consensus size: 40
60243198 AAATTGAATG
* ** * **
60243208 ATATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGA-CCCGAAGGCAATTGCGCTAGTGATT
* **
60243248 ATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGCGCTAGTGATT
* * *
60243288 ACATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGCGCTA-GTGATT
60243328 ATATCCGG
1 ATATCCGG
60243336 TTATATTCCG
Statistics
Matches: 70, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 1 0.01
40 68 0.97
41 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGCGCTAGTGATT
Found at i:60248777 original size:29 final size:28
Alignment explanation
Indices: 60248745--60248839 Score: 86
Period size: 29 Copynumber: 3.4 Consensus size: 28
60248735 ATACCCTTCG
**
60248745 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACATAGTGCC-TATTTTTCC
* *
60248774 AGCTTGCACACATAGTGTC-ATTTTTCC
1 AGCTCGCACACATAGTGCCTATTTTTCC
* *
60248801 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACATAGTGCC-TATTTTTCC
*
60248830 AGCACGCACA
1 AGCTCGCACA
60248840 TATATTTCCA
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
27 23 0.43
28 1 0.02
29 30 0.56
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (28 bp):
AGCTCGCACACATAGTGCCTATTTTTCC
Found at i:60248808 original size:27 final size:27
Alignment explanation
Indices: 60248766--60248817 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
60248756 CCAGTGCCGT
*
60248766 ATTTTTCCAGCTTGCACACATAGTGTC
1 ATTTTTCCAGCATGCACACATAGTGTC
*
60248793 ATTTTTCCAGCATGCACACTTAGTG
1 ATTTTTCCAGCATGCACACATAGTG
60248818 CCTTATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (27 bp):
ATTTTTCCAGCATGCACACATAGTGTC
Found at i:60248845 original size:19 final size:19
Alignment explanation
Indices: 60248821--60248858 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
60248811 CTTAGTGCCT
60248821 TATATTTCCAGCACGCACA
1 TATATTTCCAGCACGCACA
60248840 TATATTTCCAGCACGCACA
1 TATATTTCCAGCACGCACA
60248859 CTTAGTGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.32, G:0.11, T:0.26
Consensus pattern (19 bp):
TATATTTCCAGCACGCACA
Found at i:60249700 original size:143 final size:141
Alignment explanation
Indices: 60249510--60249804 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
60249500 AAATTCTATA
60249510 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
60249575 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
60249640 GAAGACAACAT
131 GAAAACAACAT
60249651 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
60249716 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
60249781 AGGAAAACAACAT
129 AGGAAAACAACAT
60249794 GCATGGCCGAA
1 GCATGGCCGAA
60249805 ATTTAACTCA
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 132 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:60256811 original size:58 final size:58
Alignment explanation
Indices: 60256659--60256818 Score: 167
Period size: 58 Copynumber: 2.8 Consensus size: 58
60256649 AATTTAAGCC
* *** * * ** * *
60256659 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * * *
60256717 TGCACACATAGTGTCGTATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
60256775 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
60256819 AATCTCGTCA
Statistics
Matches: 81, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
58 81 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:60256819 original size:29 final size:29
Alignment explanation
Indices: 60256688--60256819 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
60256678 CCTTCGAGCT
** * * *
60256688 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * * * *
60256717 TGCACACATAGTGTCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
60256746 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
60256775 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
60256804 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60256820 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:60257653 original size:143 final size:141
Alignment explanation
Indices: 60257463--60257757 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
60257453 AAATTCTATA
60257463 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
60257528 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
60257593 GAAGACAACAT
131 GAAAACAACAT
60257604 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
60257669 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
60257734 AGGAAAACAACAT
129 AGGAAAACAACAT
60257747 GCATGGCCGAA
1 GCATGGCCGAA
60257758 ATTTAACTCA
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 132 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:60262681 original size:68 final size:68
Alignment explanation
Indices: 60262561--60262687 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 68
60262551 GCTACATCAA
* * *
60262561 TCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGAGACCTAGCTACCTCATA
1 TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGAGACCTAGCTACCTCATA
60262626 ATG
66 ATG
* * *
60262629 TCTCGTAGCTCTCTTGTAC-ACATGGTATACATC-CCGTATTACACATGTGACCTAGCTAC
1 TCTCGTAGCTCTCTTGT-CTACATGGTATACA-CACAGTATCACACATGAGACCTAGCTAC
60262688 ATACCATCTG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
68 49 0.96
69 2 0.04
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.31
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGAGACCTAGCTACCTCATA
ATG
Found at i:60263186 original size:29 final size:29
Alignment explanation
Indices: 60263153--60263211 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
60263143 TCCTTAACCC
60263153 AAACTTTGGAAAAATTACAATTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTCCCCT
* * * * *
60263182 AAACTTTTGCATATTTACACTTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTCCCCT
60263211 A
1 A
60263212 GGCTCGAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (29 bp):
AAACTTTGGAAAAATTACAATTTTCCCCT
Found at i:60269036 original size:36 final size:36
Alignment explanation
Indices: 60268987--60269061 Score: 123
Period size: 36 Copynumber: 2.1 Consensus size: 36
60268977 AAAACCATGC
*
60268987 AAAGAAAAAGAATTTTATAGCGCTCTATTCTAATGT
1 AAAGAAAAAGAATTTTATAGCGCTCTAATCTAATGT
* *
60269023 AAAGAAAATGAATTTTATAGCTCTCTAATCTAATGT
1 AAAGAAAAAGAATTTTATAGCGCTCTAATCTAATGT
60269059 AAA
1 AAA
60269062 TGGTGTGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (36 bp):
AAAGAAAAAGAATTTTATAGCGCTCTAATCTAATGT
Found at i:60269361 original size:20 final size:19
Alignment explanation
Indices: 60269337--60269384 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
60269327 TTTTCGACCC
*
60269337 AAATTAATTAATTTCTCTA
1 AAATTAATTAATTACTCTA
* *
60269356 ATAATTATTTAATTACTTTA
1 A-AATTAATTAATTACTCTA
60269376 AAATTAATT
1 AAATTAATT
60269385 TTCCAAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (19 bp):
AAATTAATTAATTACTCTA
Found at i:60270751 original size:35 final size:35
Alignment explanation
Indices: 60270712--60270782 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
60270702 AGTTCACCAA
60270712 GCTCTTCAATCATTTCTAGTTCAATTAACTCAAAT
1 GCTCTTCAATCATTTCTAGTTCAATTAACTCAAAT
60270747 GCTCTTCAATCATTTCTAGTTCAATTAACTCAAAT
1 GCTCTTCAATCATTTCTAGTTCAATTAACTCAAAT
60270782 G
1 G
60270783 AGTCATCATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (35 bp):
GCTCTTCAATCATTTCTAGTTCAATTAACTCAAAT
Found at i:60270794 original size:35 final size:35
Alignment explanation
Indices: 60270712--60270795 Score: 125
Period size: 35 Copynumber: 2.4 Consensus size: 35
60270702 AGTTCACCAA
*
60270712 GCTCTTCAATCATTTCTAGTTCAATTAACTCAAAT
1 GCTCATCAATCATTTCTAGTTCAATTAACTCAAAT
*
60270747 GCTCTTCAATCATTTCTAGTTCAATTAACTCAAAT
1 GCTCATCAATCATTTCTAGTTCAATTAACTCAAAT
*
60270782 GAGTCATC-ATCATT
1 G-CTCATCAATCATT
60270796 ATTAGAATTA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
35 42 0.91
36 4 0.09
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (35 bp):
GCTCATCAATCATTTCTAGTTCAATTAACTCAAAT
Found at i:60282329 original size:41 final size:41
Alignment explanation
Indices: 60282251--60282395 Score: 143
Period size: 42 Copynumber: 3.5 Consensus size: 41
60282241 AATACTCGAT
* *
60282251 ATCTCGCACACTAAATGCCA-AAGCATAGTTGAAGCTATTATA
1 ATCTCGCACACTAAGTGCCATTA-CATAGTTGAAGCTATT-TA
* * *
60282293 ATCTCGCACACTAAGTGCC-TTTCATAGCTGAAGCTATCTCA
1 ATCTCGCACACTAAGTGCCATTACATAGTTGAAGCTAT-TTA
* * * *
60282334 GTTTCGCACACTAAGTGCCATATAAATAGTTGAAGCTATTCTG
1 ATCTCGCACACTAAGTGCCAT-TACATAGTTGAAGCTATT-TA
60282377 AT-TCGCACACTAAGTGCCA
1 ATCTCGCACACTAAGTGCCA
60282396 ATCATATTCG
Statistics
Matches: 85, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 32 0.38
42 38 0.45
43 15 0.18
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (41 bp):
ATCTCGCACACTAAGTGCCATTACATAGTTGAAGCTATTTA
Found at i:60285068 original size:40 final size:40
Alignment explanation
Indices: 60285023--60285189 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
60285013 CGGAATATAA
60285023 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
60285063 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
60285103 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60285143 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
60285182 CCGGATAT
1 CCGGATAT
60285190 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60285173 original size:80 final size:79
Alignment explanation
Indices: 60285023--60285189 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
60285013 CGGAATATAA
* *
60285023 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
60285088 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
60285103 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
60285165 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
60285182 CCGGATAT
1 CCGGATAT
60285190 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:60286038 original size:17 final size:19
Alignment explanation
Indices: 60286015--60286060 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
60286005 AAGAAGCATG
60286015 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
60286033 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
60286051 AATCATGCTC
1 AATCATGCTC
60286061 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:60293068 original size:40 final size:40
Alignment explanation
Indices: 60293023--60293189 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
60293013 CGGAATATAA
60293023 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
60293063 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
60293103 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60293143 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
60293182 CCGGATAT
1 CCGGATAT
60293190 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60293173 original size:80 final size:79
Alignment explanation
Indices: 60293023--60293189 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
60293013 CGGAATATAA
* *
60293023 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
60293088 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
60293103 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
60293165 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
60293182 CCGGATAT
1 CCGGATAT
60293190 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:60294033 original size:17 final size:19
Alignment explanation
Indices: 60294010--60294055 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
60294000 AAGAAGCATG
60294010 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
60294028 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
60294046 AATCATGCTC
1 AATCATGCTC
60294056 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:60296941 original size:43 final size:42
Alignment explanation
Indices: 60296791--60296947 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 42
60296781 ACATTAGGTT
* * *
60296791 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGA
1 ATCGATAT-TGAATACATGTAAGACCATGTTTGGGACATTGGC
*
60296834 ATTG-TATTGATATTACATGTAAGACCATGTTTGGGACATTGGC
1 ATCGATATTGA-A-TACATGTAAGACCATGTTTGGGACATTGGC
* * * * * * *
60296877 ATCGTTAATCGATTTCGTGTAAGACCTTGTTTGGGACAATGGC
1 ATCGAT-ATTGAATACATGTAAGACCATGTTTGGGACATTGGC
*
60296920 ATCGATATGTGAAAACATGTAAGACCAT
1 ATCGATAT-TGAATACATGTAAGACCAT
60296948 ATCTGGGATA
Statistics
Matches: 91, Mismatches: 18, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
41 3 0.03
42 5 0.05
43 78 0.86
44 1 0.01
45 4 0.04
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
ATCGATATTGAATACATGTAAGACCATGTTTGGGACATTGGC
Found at i:60310606 original size:28 final size:28
Alignment explanation
Indices: 60310574--60310629 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
60310564 TTGAATAAGA
60310574 GTAAATTGTACAATTATGATGTTTTACC
1 GTAAATTGTACAATTATGATGTTTTACC
60310602 GTAAATTGTACAATTATGATGTTTTACC
1 GTAAATTGTACAATTATGATGTTTTACC
60310630 TTTAAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (28 bp):
GTAAATTGTACAATTATGATGTTTTACC
Found at i:60310928 original size:19 final size:19
Alignment explanation
Indices: 60310904--60310941 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
60310894 TTTATCGTAT
60310904 ATGATCATGAGATGTGGTC
1 ATGATCATGAGATGTGGTC
60310923 ATGATCATGAGATGTGGTC
1 ATGATCATGAGATGTGGTC
60310942 CTTATCCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.32, T:0.32
Consensus pattern (19 bp):
ATGATCATGAGATGTGGTC
Found at i:60313392 original size:40 final size:40
Alignment explanation
Indices: 60313328--60313518 Score: 208
Period size: 39 Copynumber: 4.8 Consensus size: 40
60313318 GCTACTCGTT
* * * ***
60313328 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
60313368 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
60313408 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
60313447 CCATTGCCTTCGGG-CTTAGCCCGGACATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
60313486 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
60313519 TTCGCACATT
Statistics
Matches: 133, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.21
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:60313445 original size:39 final size:39
Alignment explanation
Indices: 60313364--60313526 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
60313354 TATGGTAACC
* *
60313364 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
60313404 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
60313443 CGCACCATTGCCTTCGGGCTTAGCCCGGACATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
60313482 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
60313521 CGCACA
1 CGCACA
60313527 TTCATACACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.22
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:60316768 original size:29 final size:29
Alignment explanation
Indices: 60316735--60316812 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
60316725 GTGACGAGAT
* *
60316735 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAAAATA
*
60316764 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAAAATA
* **
60316793 CGGCACTGGGTGTGCGAGCT
1 TGGCACTAAGTGTGCGAGCT
60316813 CGGAGGGTTG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.23
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:60324457 original size:28 final size:28
Alignment explanation
Indices: 60324417--60324472 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
60324407 TTGAACAAGA
*
60324417 GTAAATTGTACAATTATGATGTTTTACC
1 GTAAATTGTACAATCATGATGTTTTACC
60324445 GTAAATTGTACAATCATGATGTTTTACC
1 GTAAATTGTACAATCATGATGTTTTACC
60324473 TTTAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.41
Consensus pattern (28 bp):
GTAAATTGTACAATCATGATGTTTTACC
Found at i:60328740 original size:40 final size:40
Alignment explanation
Indices: 60328673--60328849 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
60328663 ACCCAAGTAT
*
60328673 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
60328712 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
60328752 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
60328792 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
60328832 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
60328850 TTATCATCTG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:60343224 original size:28 final size:28
Alignment explanation
Indices: 60343188--60343246 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
60343178 TAGAGGTATA
60343188 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
60343216 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
60343244 TCG
1 TCG
60343247 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:60343893 original size:27 final size:27
Alignment explanation
Indices: 60343863--60343924 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
60343853 GGGCAAAATG
60343863 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
60343890 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
60343917 GTAATTTT
1 GTAATTTT
60343925 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:60343938 original size:54 final size:54
Alignment explanation
Indices: 60343880--60344030 Score: 160
Period size: 54 Copynumber: 2.8 Consensus size: 54
60343870 TACCCCACAA
** * * *
60343880 GGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** *
60343934 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** * * * *
60343988 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATT
60344031 CTGTAAATTG
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.02
54 83 0.98
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:60343996 original size:81 final size:81
Alignment explanation
Indices: 60343878--60344030 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
60343868 TTTACCCCAC
** *
60343878 AAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTT-TCAAACCATGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTAT-AAACCAAGGGTATTT
60343942 TGGTAATTTTATAAACA
65 TGGTAATTTTATAAACA
* * *
60343959 AAGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAA-CAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTT
60344023 TGGTAATT
65 TGGTAATT
60344031 CTGTAAATTG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTT
GGTAATTTTATAAACA
Found at i:60344037 original size:27 final size:27
Alignment explanation
Indices: 60343907--60344030 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
60343897 TACCCTACAG
* *
60343907 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
60343934 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
60343961 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
60343988 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
60344015 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
60344031 CTGTAAATTG
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:60344044 original size:27 final size:27
Alignment explanation
Indices: 60344014--60344084 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
60344004 TTATAAACCA
* *
60344014 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
60344041 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
60344068 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
60344085 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:60344046 original size:54 final size:54
Alignment explanation
Indices: 60343907--60344030 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
60343897 TACCCTACAG
* *
60343907 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* *
60343961 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
*
60344015 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
60344031 CTGTAAATTG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:60344056 original size:81 final size:81
Alignment explanation
Indices: 60343904--60344057 Score: 175
Period size: 81 Copynumber: 1.9 Consensus size: 81
60343894 TTTTACCCTA
* * ***
60343904 CAGGGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAAGGGTATTT
1 CAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAAA
*
60343969 TAGTAATTTTACAAAC
66 CAGTAATTTTACAAAC
* * * ***
60343985 CAGGGGTATTTTGGTGATTTTAT-AAACCAAGGGTATTTTGGTAATTCTGTAAATTGAGGGTAAA
1 CAGGGGTATTTTAGTAATTTT-TCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAA
*
60344049 ACGGTAATT
65 ACAGTAATT
60344058 CTGTAAATCG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
81 58 0.98
82 1 0.02
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (81 bp):
CAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAAA
CAGTAATTTTACAAAC
Found at i:60347348 original size:28 final size:28
Alignment explanation
Indices: 60347312--60347370 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
60347302 TAGAGGTATA
60347312 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
60347340 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
60347368 TCG
1 TCG
60347371 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:60349374 original size:40 final size:40
Alignment explanation
Indices: 60349246--60349376 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
60349236 TATGCTGGAA
* * * *
60349246 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
60349286 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
60349326 ATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
60349366 ATTATATCCGG
1 ATTATATCCGG
60349377 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:60351243 original size:27 final size:27
Alignment explanation
Indices: 60351213--60351274 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
60351203 GGGCAAAATG
60351213 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
60351240 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
60351267 GTAATTTT
1 GTAATTTT
60351275 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:60351287 original size:27 final size:27
Alignment explanation
Indices: 60351257--60351380 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
60351247 TACCCTACAG
* *
60351257 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
60351284 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
60351311 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
60351338 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
60351365 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
60351381 CTGTACAAGT
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:60351288 original size:54 final size:54
Alignment explanation
Indices: 60351230--60351380 Score: 160
Period size: 54 Copynumber: 2.8 Consensus size: 54
60351220 TACCCCACAA
** * * *
60351230 GGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** *
60351284 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** * * * *
60351338 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATT
60351381 CTGTACAAGT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.02
54 83 0.98
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:60351346 original size:81 final size:81
Alignment explanation
Indices: 60351228--60351380 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
60351218 TTTACCCCAC
** *
60351228 AAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTT-TCAAACCATGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTAT-AAACCAAGGGTATTT
60351292 TGGTAATTTTATAAACA
65 TGGTAATTTTATAAACA
* * *
60351309 AAGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAA-CAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTT
60351373 TGGTAATT
65 TGGTAATT
60351381 CTGTACAAGT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTT
GGTAATTTTATAAACA
Found at i:60352539 original size:43 final size:43
Alignment explanation
Indices: 60352447--60352528 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
60352437 GAGTAAGACC
* **
60352447 ATGGCATCCATATGTGTTTACGAGTAAGACCCTGTCTGGAACA
1 ATGGCATCAATATGTGACTACGAGTAAGACCCTGTCTGGAACA
60352490 ATGGCATCAATATGTGACTAC-ATGTAAGACCAC-GTCTGG
1 ATGGCATCAATATGTGACTACGA-GTAAGACC-CTGTCTGG
60352529 GACGTTGGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 1 0.03
43 32 0.94
44 1 0.03
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
ATGGCATCAATATGTGACTACGAGTAAGACCCTGTCTGGAACA
Done.