Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 205 of 378
Found at i:60577209 original size:56 final size:54
Alignment explanation
Indices: 60577104--60577350 Score: 174
Period size: 54 Copynumber: 4.5 Consensus size: 54
60577094 GGTAAAATGG
* ** * * *
60577104 AATTCTACAAATCGAGGGCATTTCAGTAATTTTGTGAACCAATGGTATTTCT-AT
1 AATTTTACAAATTAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTT-TGAT
* * * * *
60577158 AATTTTTAGAAAGTTAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGT
1 AA-TTTTACAAA-TTAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTTGAT
* * ***
60577214 AATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATTTTGAT
1 AATTTTACAAATTAAGGGTATTTCAGTAATTTTGTAAACCAAG-GGTATTTTGAT
* ** * ** ** * *
60577268 AATTTTTCAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGT
1 AATTTTACAAATTAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTTGAT
* ** *
60577322 AATTTTATAAACAAAGGGTATTTTAGTAA
1 AATTTTACAAATTAAGGGTATTTCAGTAA
60577351 GTTTACAATC
Statistics
Matches: 154, Mismatches: 34, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
53 1 0.01
54 102 0.66
55 17 0.11
56 34 0.22
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
AATTTTACAAATTAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTTGAT
Found at i:60577215 original size:27 final size:27
Alignment explanation
Indices: 60577175--60577408 Score: 206
Period size: 27 Copynumber: 8.7 Consensus size: 27
60577165 AGAAAGTTAA
* *
60577175 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTATAAACCAG
* **
60577202 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
60577228 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTATAAACCAG
* *
60577256 TGGTATTTTGATAATTTT-TCAAACCAG
1 GGGTATTTTGGTAATTTTAT-AAACCAG
*
60577283 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
60577310 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * * * *
60577337 GGGTATTTTAGTAAGTTTA-CAATCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * **
60577363 TGGTATTTCGGTAATTTTATAAACTGG
1 GGGTATTTTGGTAATTTTATAAACCAG
*
60577390 GGGTACTTTGGTAATTTTA
1 GGGTATTTTGGTAATTTTA
60577409 CAACAGGGGG
Statistics
Matches: 165, Mismatches: 36, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
26 21 0.13
27 143 0.87
28 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:60577342 original size:81 final size:80
Alignment explanation
Indices: 60577173--60577411 Score: 254
Period size: 81 Copynumber: 3.0 Consensus size: 80
60577163 TTAGAAAGTT
*
60577173 AAGGGTATTTCTG-TAATTTTGT-AAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTAT
1 AAGGGTATTT-TGATAATTTT-TCAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTAT
* *
60577235 TTCGGTAATTTCACAAAC
63 TTTGGTAATTTTACAAAC
* * *
60577253 CAGTGGTATTTTGATAATTTTTCAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 AAG-GGTATTTTGATAATTTTTCAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
*
60577318 TGGTAATTTTATAAAC
65 TGGTAATTTTACAAAC
* * ** * * * *
60577334 AAAGGGTATTTT-AGTAAGTTTAC-AATCAATGGTATTTCGGTAATTTTATAAACTGGGGGTACT
1 -AAGGGTATTTTGA-TAATTTTTCAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATT
60577397 TTGGTAATTTTACAA
64 TTGGTAATTTTACAA
60577412 CAGGGGGTAT
Statistics
Matches: 134, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
80 52 0.39
81 79 0.59
82 3 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (80 bp):
AAGGGTATTTTGATAATTTTTCAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
GGTAATTTTACAAAC
Found at i:60577418 original size:27 final size:25
Alignment explanation
Indices: 60577199--60577432 Score: 173
Period size: 27 Copynumber: 8.8 Consensus size: 25
60577189 TTTTGTAAAT
60577199 CAGGGGTATTTTGGTAATTTTACAA
1 CAGGGGTATTTTGGTAATTTTACAA
* *
60577224 -ATTGAGGGTATTTCGGTAATTTCACAAA
1 CA--G-GGGTATTTTGGTAATTTTAC-AA
* * *
60577252 CCAGTGGTATTTTGATAATTTTTCAAA
1 -CAGGGGTATTTTGGTAATTTTAC-AA
60577279 CCAGGGGTATTTTGGTAATTTTACAAA
1 -CAGGGGTATTTTGGTAATTTTAC-AA
*
60577306 CCAGGGGTATTTTGGTAATTTTATAAA
1 -CAGGGGTATTTTGGTAATTTTA-CAA
* * *
60577333 CAAAGGGTATTTTAGTAAGTTTACAA
1 C-AGGGGTATTTTGGTAATTTTACAA
** * *
60577359 TCAATGGTATTTCGGTAATTTTATAAA
1 -CAGGGGTATTTTGGTAATTTTA-CAA
* *
60577386 CTGGGGGTACTTTGGTAATTTTACAA
1 C-AGGGGTATTTTGGTAATTTTACAA
**
60577412 CAGGGGGTATTTCAGTAATTT
1 CA-GGGGTATTTTGGTAATTT
60577433 GGTAAACTAA
Statistics
Matches: 167, Mismatches: 30, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
24 1 0.01
26 40 0.24
27 122 0.73
28 3 0.02
30 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (25 bp):
CAGGGGTATTTTGGTAATTTTACAA
Found at i:60577421 original size:53 final size:54
Alignment explanation
Indices: 60577172--60577442 Score: 246
Period size: 54 Copynumber: 5.1 Consensus size: 54
60577162 TTTAGAAAGT
** * * *
60577172 TAAGGGTATTTCT-GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAAT
1 TAAGGGTATTT-TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
* * * * *
60577226 TGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGATAATTTT-TCAAAC
1 TAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAT-AAAC
* *
60577280 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
1 TAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
* * * * ** *
60577334 AAAGGGTATTTTAGTAAGTTTAC-AATCAATGGTATTTCGGTAATTTTATAAAC
1 TAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
** * ** **
60577387 TGGGGGTACTTTGGTAATTTTAC-AA-CAGGGGGTATTTCAGTAATTTGGTAAAC
1 TAAGGGTATTTTGGTAATTTTACAAACCA-GGGGTATTTTGGTAATTTTATAAAC
60577440 TAA
1 TAA
60577443 AGTATTCTAA
Statistics
Matches: 175, Mismatches: 38, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
52 2 0.01
53 66 0.38
54 106 0.61
55 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
TAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
Found at i:60595961 original size:79 final size:81
Alignment explanation
Indices: 60595860--60596044 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
60595850 ACGACTCGCT
** * *
60595860 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
60595923 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
60595940 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
60596004 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
60596020 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60596045 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:60596044 original size:40 final size:39
Alignment explanation
Indices: 60595853--60596044 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
60595843 GGATATAACG
* ** * *
60595853 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
60595893 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
60595933 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
60595972 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
60596012 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
60596045 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:60603939 original size:40 final size:39
Alignment explanation
Indices: 60603893--60604031 Score: 147
Period size: 39 Copynumber: 3.5 Consensus size: 39
60603883 CGGATATAAC
*
60603893 GACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGGTTATAGT
1 GACTCGCACAAATGCCTTCGGGACTGAA-CCCGGTT-TAGT
* *
60603933 GACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTAGT
1 GACTCGCACAAATGCCTTCGGGACTGAACCCGGTTTAGT
* * * * *
60603972 AACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATT
1 GACTCGCACAAATGCCTTCGGGACTGAACCCGG-TTTAGT
* *
60604011 AACTCGCACGAATGCCTTCGG
1 GACTCGCACAAATGCCTTCGG
60604032 ATCCTAGTCC
Statistics
Matches: 87, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
38 9 0.10
39 47 0.54
40 29 0.33
41 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
GACTCGCACAAATGCCTTCGGGACTGAACCCGGTTTAGT
Found at i:60604014 original size:39 final size:40
Alignment explanation
Indices: 60603894--60604084 Score: 194
Period size: 40 Copynumber: 4.8 Consensus size: 40
60603884 GGATATAACG
* ** *
60603894 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGTG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
60603934 ACTCGCACGAATGCCTTCGGGACTTAACCCGG-TTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
60603973 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * *
60604012 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
*
60604052 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
60604085 CATCATTCGA
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
38 11 0.09
39 45 0.36
40 59 0.47
41 10 0.08
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:60607238 original size:17 final size:17
Alignment explanation
Indices: 60607216--60607250 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
60607206 ACTCAAATTT
60607216 CACAATGTCGACAATAA
1 CACAATGTCGACAATAA
60607233 CACAATGTCGACAATAA
1 CACAATGTCGACAATAA
60607250 C
1 C
60607251 CAGCCAAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.26, G:0.11, T:0.17
Consensus pattern (17 bp):
CACAATGTCGACAATAA
Found at i:60613509 original size:27 final size:27
Alignment explanation
Indices: 60613479--60613612 Score: 214
Period size: 27 Copynumber: 5.0 Consensus size: 27
60613469 CCCTAAACGA
* *
60613479 TAAAATGACTATTTTACCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
60613506 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
*
60613533 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
60613560 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * *
60613587 TAAGATGACTGTTTTGCCCCTATGTG
1 TAAAATGACTATTTTGCCCTTATGTG
60613613 CAGCATATAT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGG
Found at i:60616517 original size:21 final size:22
Alignment explanation
Indices: 60616491--60616549 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
60616481 GGTTATTTAG
*
60616491 ATGTTTCATGATAG-TTTATTA
1 ATGTTTCAAGATAGATTTATTA
* *
60616512 ATGTTTGAAGCTAGATTTATTA
1 ATGTTTCAAGATAGATTTATTA
* *
60616534 ATGTTTGAAGCTAGAT
1 ATGTTTCAAGATAGAT
60616550 ATACAAGTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
21 11 0.32
22 23 0.68
ACGTcount: A:0.31, C:0.05, G:0.19, T:0.46
Consensus pattern (22 bp):
ATGTTTCAAGATAGATTTATTA
Found at i:60616532 original size:22 final size:22
Alignment explanation
Indices: 60616505--60616549 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
60616495 TTCATGATAG
60616505 TTTATTAATGTTTGAAGCTAGA
1 TTTATTAATGTTTGAAGCTAGA
60616527 TTTATTAATGTTTGAAGCTAGA
1 TTTATTAATGTTTGAAGCTAGA
60616549 T
1 T
60616550 ATACAAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (22 bp):
TTTATTAATGTTTGAAGCTAGA
Found at i:60616561 original size:20 final size:22
Alignment explanation
Indices: 60616511--60616561 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
60616501 ATAGTTTATT
* *
60616511 AATGTTTGAAGCTAGATTTATT
1 AATGTTTGAAGCTAGATATATC
60616533 AATGTTTGAAGCTAGATATA-C
1 AATGTTTGAAGCTAGATATATC
60616554 AA-GTTTGA
1 AATGTTTGA
60616562 TAAAGTGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 6 0.22
21 2 0.07
22 19 0.70
ACGTcount: A:0.35, C:0.06, G:0.20, T:0.39
Consensus pattern (22 bp):
AATGTTTGAAGCTAGATATATC
Found at i:60617309 original size:43 final size:43
Alignment explanation
Indices: 60617130--60617298 Score: 175
Period size: 43 Copynumber: 3.9 Consensus size: 43
60617120 GAGATTACAG
* * * *
60617130 GTAAGACCCTGTCTGGGACATTGGCAT-TATATTGTGGTTATGT
1 GTAAGACCATGTCTGGGACATTGGCATCGATA-TCTGATTATGT
*
60617173 GTAAGACCATGTCAGGGACATTGGCATC-ATTATAC-GATTATGT
1 GTAAGACCATGTCTGGGACATTGGCATCGA-TAT-CTGATTATGT
* * * *
60617216 GTAAGACCATGTCTAGGACATTGGCATCGTTAAT-TGATTTTAT
1 GTAAGACCATGTCTGGGACATTGGCATCGAT-ATCTGATTATGT
* *
60617259 GTAAGACCCTGTCTGGGACAGTGGCATCGATATCTGATTA
1 GTAAGACCATGTCTGGGACATTGGCATCGATATCTGATTA
60617299 CCTCTAAGAC
Statistics
Matches: 105, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
42 2 0.02
43 99 0.94
44 4 0.04
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
GTAAGACCATGTCTGGGACATTGGCATCGATATCTGATTATGT
Found at i:60623711 original size:13 final size:13
Alignment explanation
Indices: 60623693--60623721 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
60623683 TGAATTAATG
60623693 ATTAAATAAGGAA
1 ATTAAATAAGGAA
60623706 ATTAAATAAGGAA
1 ATTAAATAAGGAA
60623719 ATT
1 ATT
60623722 TTGTTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.14, T:0.28
Consensus pattern (13 bp):
ATTAAATAAGGAA
Found at i:60626884 original size:35 final size:35
Alignment explanation
Indices: 60626845--60626917 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
60626835 GGTATGTGAT
*
60626845 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAAATTGATCTGACGAGA
*
60626880 ATATATATTATTTATGTGAAATTGATTTGACGAGA
1 ATATATATTATTTATGTGAAATTGATCTGACGAGA
60626915 ATA
1 ATA
60626918 AAGAATGTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.37, C:0.04, G:0.18, T:0.41
Consensus pattern (35 bp):
ATATATATTATTTATGTGAAATTGATCTGACGAGA
Found at i:60627729 original size:43 final size:42
Alignment explanation
Indices: 60627681--60627801 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 42
60627671 TTGTATTGTC
60627681 ATTATGTGTAAGACCATTTCTGTGACATTGGCATCATT-ATACG
1 ATTATGTGTAAGACCATTTCTG-GACATTGGCATCATTAAT-CG
* *
60627724 ATTATGTGTAAGACCATGTT-TGGGAGATTAGCATCATTAATCG
1 ATTATGTGTAAGACCAT-TTCT-GGACATTGGCATCATTAATCG
* *
60627767 ATT-TCGTGTAAGACCATGTCTAGGACAGTGGCATC
1 ATTAT-GTGTAAGACCATTTCT-GGACATTGGCATC
60627802 GATATGTGAT
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
42 2 0.03
43 59 0.89
44 5 0.08
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (42 bp):
ATTATGTGTAAGACCATTTCTGGACATTGGCATCATTAATCG
Found at i:60629471 original size:28 final size:28
Alignment explanation
Indices: 60629410--60629507 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
60629400 TCACAAATTG
** * *
60629410 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
60629439 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
60629467 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
60629495 GCACTAAGTGTGC
1 GCACTAAGTGTGC
60629508 GGGCTTATGG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:60633930 original size:23 final size:23
Alignment explanation
Indices: 60633904--60634015 Score: 83
Period size: 23 Copynumber: 5.0 Consensus size: 23
60633894 AGAGTTTATC
* * *
60633904 GTTTCAGCTCATATGGGCATACT
1 GTTTCAGCTCATATGAGCTTACA
*
60633927 GTTT-AGCTCA-ATAGAGCTTACC
1 GTTTCAGCTCATAT-GAGCTTACA
*
60633949 GTTTCAGCTCGTATGAGCTTACA
1 GTTTCAGCTCATATGAGCTTACA
*
60633972 G-TTCAGCTCGATA-GAGTTTATCA
1 GTTTCAGCTC-ATATGAGCTTA-CA
*
60633995 -TTTTAGCTCA-ATAGAGCTTAC
1 GTTTCAGCTCATAT-GAGCTTAC
60634016 TATTCATCAA
Statistics
Matches: 72, Mismatches: 9, Indels: 17
0.73 0.09 0.17
Matches are distributed among these distances:
21 3 0.04
22 32 0.44
23 35 0.49
24 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.35
Consensus pattern (23 bp):
GTTTCAGCTCATATGAGCTTACA
Found at i:60634012 original size:45 final size:45
Alignment explanation
Indices: 60633862--60634021 Score: 160
Period size: 45 Copynumber: 3.6 Consensus size: 45
60633852 TACCGATATA
* * * * *
60633862 TCAGCTCGTAAGAGCTTATTGTTCATCTTGATAGAGTTTATCGTT
1 TCAGCTCATATGAGCTTACTGTTCAGCTCGATAGAGTTTATCGTT
* * * * * *
60633907 TCAGCTCATATGGGCATACTGTTTAGCTCAATAGAGCTTACCGTT
1 TCAGCTCATATGAGCTTACTGTTCAGCTCGATAGAGTTTATCGTT
* * *
60633952 TCAGCTCGTATGAGCTTACAGTTCAGCTCGATAGAGTTTATCATT
1 TCAGCTCATATGAGCTTACTGTTCAGCTCGATAGAGTTTATCGTT
* *
60633997 TTAGCTCA-ATAGAGCTTACTATTCA
1 TCAGCTCATAT-GAGCTTACTGTTCA
60634022 TCAACTCAGG
Statistics
Matches: 90, Mismatches: 24, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
44 2 0.02
45 88 0.98
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (45 bp):
TCAGCTCATATGAGCTTACTGTTCAGCTCGATAGAGTTTATCGTT
Found at i:60639121 original size:15 final size:14
Alignment explanation
Indices: 60639097--60639129 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
60639087 GTTCCCTTTC
60639097 TTTG-AATTTTAGTT
1 TTTGAAATTTTA-TT
60639111 TTTGAAATTTTATT
1 TTTGAAATTTTATT
60639125 TTTGA
1 TTTGA
60639130 GTGTTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (14 bp):
TTTGAAATTTTATT
Found at i:60639449 original size:9 final size:9
Alignment explanation
Indices: 60639435--60639464 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
60639425 ACAAATGATT
60639435 TTAAAATTA
1 TTAAAATTA
60639444 TTAAAATTA
1 TTAAAATTA
*
60639453 TTAAAAATA
1 TTAAAATTA
60639462 TTA
1 TTA
60639465 TTTTATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
TTAAAATTA
Found at i:60641559 original size:40 final size:40
Alignment explanation
Indices: 60641469--60641689 Score: 229
Period size: 40 Copynumber: 5.5 Consensus size: 40
60641459 CTCAAGTAAT
* * * *
60641469 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
60641507 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
60641547 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
60641587 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
60641627 CTTTC--GATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 C-TTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
60641668 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
60641690 CATTCGAATA
Statistics
Matches: 150, Mismatches: 23, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
38 11 0.07
39 17 0.11
40 93 0.62
41 27 0.18
42 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:60642409 original size:2 final size:2
Alignment explanation
Indices: 60642402--60642433 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
60642392 AAGTGCAAAC
60642402 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60642434 GTGCAAGAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60645656 original size:29 final size:29
Alignment explanation
Indices: 60645594--60645683 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
60645584 CACATACTTG
* * *
60645594 TATATGGCCCACTAGGCCC-TATTACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
60645622 TATATGGCCCATTAGACCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * * *
60645651 TATATGGTCCATCAGGCCTAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
60645680 TATA
1 TATA
60645684 ATCATGCTCA
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
28 17 0.33
29 35 0.67
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:60645901 original size:8 final size:8
Alignment explanation
Indices: 60645888--60645930 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
60645878 GTAGTCAAAC
60645888 TTTTGGCT
1 TTTTGGCT
*
60645896 TTTTGGCA
1 TTTTGGCT
60645904 TTTTGGCT
1 TTTTGGCT
* *
60645912 TTTCGGCA
1 TTTTGGCT
*
60645920 TTTCGGCT
1 TTTTGGCT
60645928 TTT
1 TTT
60645931 GCTGATCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.05, C:0.16, G:0.23, T:0.56
Consensus pattern (8 bp):
TTTTGGCT
Found at i:60645909 original size:16 final size:16
Alignment explanation
Indices: 60645888--60645930 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
60645878 GTAGTCAAAC
*
60645888 TTTTGGCTTTTTGGCA
1 TTTTGGCTTTTCGGCA
60645904 TTTTGGCTTTTCGGCA
1 TTTTGGCTTTTCGGCA
*
60645920 TTTCGGCTTTT
1 TTTTGGCTTTT
60645931 GCTGATCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.05, C:0.16, G:0.23, T:0.56
Consensus pattern (16 bp):
TTTTGGCTTTTCGGCA
Found at i:60654557 original size:68 final size:66
Alignment explanation
Indices: 60654485--60654656 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
60654475 CATCATGTGT
* * * *
60654485 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
60654548 TGTAG
62 TGTAG
** * *
60654553 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
60654618 AG
65 AG
* * * *
60654620 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
60654657 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:60654590 original size:64 final size:64
Alignment explanation
Indices: 60654509--60654692 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
60654499 AGACATTATG
* * *
60654509 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
60654573 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
60654638 AA
63 AA
* * *
60654640 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
60654693 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:60658961 original size:68 final size:66
Alignment explanation
Indices: 60658889--60659060 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
60658879 CATCATGTGT
* * * *
60658889 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
60658952 TGTAG
62 TGTAG
** * *
60658957 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
60659022 AG
65 AG
* * * *
60659024 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
60659061 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:60658994 original size:64 final size:64
Alignment explanation
Indices: 60658913--60659096 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
60658903 AGACATTATG
* * *
60658913 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
60658977 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
60659042 AA
63 AA
* * *
60659044 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
60659097 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:60667798 original size:15 final size:15
Alignment explanation
Indices: 60667775--60667805 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
60667765 TCAAAAATTC
60667775 CAATACAAAACATAT
1 CAATACAAAACATAT
*
60667790 CAATCCAAAACATAT
1 CAATACAAAACATAT
60667805 C
1 C
60667806 TTTAATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:60676532 original size:46 final size:46
Alignment explanation
Indices: 60676482--60676604 Score: 219
Period size: 46 Copynumber: 2.7 Consensus size: 46
60676472 TTGAGCATCT
* *
60676482 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCC
60676528 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCC
*
60676574 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60676605 GGGGCGGGTT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCC
Found at i:60682005 original size:46 final size:46
Alignment explanation
Indices: 60681955--60682122 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
60681945 TGGTTGAGCA
60681955 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
60682001 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
60682046 CATCCGAACTTGTTGAG-T----CCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
60682089 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60682123 GGGGCGGGTT
Statistics
Matches: 95, Mismatches: 13, Indels: 28
0.70 0.10 0.21
Matches are distributed among these distances:
41 12 0.13
42 11 0.12
43 7 0.07
45 6 0.06
46 45 0.47
47 14 0.15
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60685715 original size:6 final size:6
Alignment explanation
Indices: 60685681--60685728 Score: 53
Period size: 6 Copynumber: 8.0 Consensus size: 6
60685671 TTAGAATGTA
* * *
60685681 AAAAAT AAATA- AAAAAC AAAATAT TAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAA-AT AAAAAT AAAAAT AAAAAT AAAAAT
60685729 GGCTAAATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
5 4 0.11
6 27 0.77
7 4 0.11
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:60706420 original size:29 final size:29
Alignment explanation
Indices: 60706359--60706457 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
60706349 ACAGTAAGTC
60706359 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
60706387 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
60706416 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
60706444 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60706458 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:60713017 original size:33 final size:34
Alignment explanation
Indices: 60712980--60713073 Score: 109
Period size: 34 Copynumber: 2.8 Consensus size: 34
60712970 CTGATACTGT
* *
60712980 AATGGGCTTAGGCCC-CACTGATACTGTTACTAA
1 AATGGGCTAAGGCCCAAACTGATACTGTTACTAA
* * *
60713013 AATGGGCTCAGGCCCAAACTGCTACTGTTACTGA
1 AATGGGCTAAGGCCCAAACTGATACTGTTACTAA
* * *
60713047 AATAGGCTAAGGCCCTAACTGAGACTG
1 AATGGGCTAAGGCCCAAACTGATACTG
60713074 AAAGGGCTTA
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
33 14 0.27
34 37 0.73
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (34 bp):
AATGGGCTAAGGCCCAAACTGATACTGTTACTAA
Found at i:60715565 original size:21 final size:20
Alignment explanation
Indices: 60715533--60715580 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
60715523 ACAACCTGCA
60715533 TCACA-GGCGTGTTCAAAGG
1 TCACACGGCGTGTTCAAAGG
* *
60715552 TCACACGGACGTGTTCTAGGG
1 TCACACGG-CGTGTTCAAAGG
60715573 TCACACGG
1 TCACACGG
60715581 GCATGTCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 5 0.20
20 2 0.08
21 18 0.72
ACGTcount: A:0.23, C:0.25, G:0.31, T:0.21
Consensus pattern (20 bp):
TCACACGGCGTGTTCAAAGG
Found at i:60729580 original size:25 final size:25
Alignment explanation
Indices: 60729552--60729599 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
60729542 CTTGAAAAGG
60729552 CTAATGAACAATTTATGAATTTTTC
1 CTAATGAACAATTTATGAATTTTTC
*
60729577 CTAATGGACAATTTATGAATTTT
1 CTAATGAACAATTTATGAATTTT
60729600 GCATACTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.44
Consensus pattern (25 bp):
CTAATGAACAATTTATGAATTTTTC
Found at i:60733054 original size:12 final size:12
Alignment explanation
Indices: 60733037--60733119 Score: 79
Period size: 12 Copynumber: 7.3 Consensus size: 12
60733027 AAGAAACATT
60733037 ATCAAAA-CTAGA
1 ATCAAAATC-AGA
*
60733049 ATCAAAATGAGA
1 ATCAAAATCAGA
60733061 ATCAAAATCAGA
1 ATCAAAATCAGA
*
60733073 ATC-AAGT--G-
1 ATCAAAATCAGA
*
60733081 A-CAGAATCAGA
1 ATCAAAATCAGA
*
60733092 ATCAGAATCAGA
1 ATCAAAATCAGA
60733104 ATCAAAATCAGA
1 ATCAAAATCAGA
60733116 ATCA
1 ATCA
60733120 GAATTAGGTG
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
7 1 0.02
8 3 0.05
9 1 0.02
10 1 0.02
11 4 0.07
12 49 0.83
ACGTcount: A:0.54, C:0.16, G:0.13, T:0.17
Consensus pattern (12 bp):
ATCAAAATCAGA
Found at i:60733075 original size:6 final size:6
Alignment explanation
Indices: 60733046--60733179 Score: 103
Period size: 6 Copynumber: 21.8 Consensus size: 6
60733036 TATCAAAACT
* * * *
60733046 AGAATC AAAATG AGAATC AAAATC AGAATC A-AGTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * *
60733095 AGAATC AGAATC AAAATC AGAATC AGAATT AG-GTGAC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
60733144 AGAATC AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
60733180 GTGAATGCAA
Statistics
Matches: 99, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
5 5 0.05
6 83 0.84
7 7 0.07
8 4 0.04
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:60733107 original size:43 final size:46
Alignment explanation
Indices: 60733046--60733156 Score: 138
Period size: 43 Copynumber: 2.4 Consensus size: 46
60733036 TATCAAAACT
* *
60733046 AGAATCAAAATGAGAATCAAAATCAGAATC-A-A-GTGACAGAATC
1 AGAATCAGAATCAGAATCAAAATCAGAATCAATAGGTGACAGAATC
*
60733089 AGAATCAGAATCAGAATCAAAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATCAAAATCAGAATC--AA-TAGGTGACAGAATC
*
60733138 AGAATCAGAATCAGTATCA
1 AGAATCAGAATCAGAATCA
60733157 GGTAACAGAA
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
43 28 0.48
46 1 0.02
48 1 0.02
49 28 0.48
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (46 bp):
AGAATCAGAATCAGAATCAAAATCAGAATCAATAGGTGACAGAATC
Found at i:60733135 original size:31 final size:31
Alignment explanation
Indices: 60733082--60733179 Score: 128
Period size: 31 Copynumber: 3.2 Consensus size: 31
60733072 AATCAAGTGA
60733082 CAGAATCAGAATCA-G-AATCAGAATCAAAAT
1 CAGAATCAGAATCAGGTAA-CAGAATCAAAAT
* * * *
60733112 CAGAATCAGAATTAGGTGACAGAATTAGAAT
1 CAGAATCAGAATCAGGTAACAGAATCAAAAT
*
60733143 CAGAATCAGTATCAGGTAACAGAATCAAAAT
1 CAGAATCAGAATCAGGTAACAGAATCAAAAT
60733174 CAGAAT
1 CAGAAT
60733180 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
30 13 0.23
31 43 0.75
32 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (31 bp):
CAGAATCAGAATCAGGTAACAGAATCAAAAT
Found at i:60733179 original size:37 final size:36
Alignment explanation
Indices: 60733059--60733179 Score: 75
Period size: 37 Copynumber: 3.1 Consensus size: 36
60733049 ATCAAAATGA
* * *
60733059 GAATCAAAATCAGAATCAAGTGACAGAATCAGAATCA
1 GAATCAGAATCAGAATCAGGTAACAGAATCA-AATCA
* *
60733096 GAATCAGAATCAAAATCA-G-AATCAGAATTAGGTGACAGAATTA
1 GAATCAGAATCAGAATCAGGTAA-CAG-A--A--T--CA-AATCA
*
60733139 GAATCAGAATCAGTATCAGGTAACAGAATCAAAATCA
1 GAATCAGAATCAGAATCAGGTAACAGAATC-AAATCA
60733176 GAAT
1 GAAT
60733180 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 7, Indels: 22
0.69 0.07 0.23
Matches are distributed among these distances:
35 1 0.02
36 4 0.06
37 26 0.39
38 1 0.02
39 2 0.03
41 2 0.03
43 24 0.36
44 4 0.06
45 2 0.03
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (36 bp):
GAATCAGAATCAGAATCAGGTAACAGAATCAAATCA
Found at i:60733346 original size:27 final size:26
Alignment explanation
Indices: 60733298--60733357 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
60733288 GCGAGGCTGC
*
60733298 CAGATATTGTGACGAAGTCACCACATA
1 CAGATATTGTGACGAAGCCACCACA-A
* * * *
60733325 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCACAA
60733351 CAGATAT
1 CAGATAT
60733358 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCACAA
Found at i:60733656 original size:27 final size:27
Alignment explanation
Indices: 60733626--60733981 Score: 426
Period size: 27 Copynumber: 13.2 Consensus size: 27
60733616 AACACCCTAG
* * *
60733626 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
60733653 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
** * *
60733680 GGGTAAAATAGTAATTCTATAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
60733707 GGGTAAAATGGTAATTCTGTAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* **
60733734 GGATAAAATAGTAAATT-TGTAAATCGA
1 GGGTAAAACGGT-AATTCTGTAAATCGA
* * *
60733761 GGGTAAAACGATAATTTTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
60733788 GGGTAAAACAGTAATTCTGTAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
60733815 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
60733842 GGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
** * *
60733869 GGGTAAAATAGTAATTCTATAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
60733896 GGGTAAAACGATAATTTTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
** *
60733923 GGGTAAAATAGTAATTCTGTAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
60733950 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
60733977 GGGTA
1 GGGTA
60733982 CTTTGGTAAT
Statistics
Matches: 281, Mismatches: 46, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 4 0.01
27 273 0.97
28 4 0.01
ACGTcount: A:0.43, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
GGGTAAAACGGTAATTCTGTAAATCGA
Found at i:60734003 original size:27 final size:26
Alignment explanation
Indices: 60733971--60734154 Score: 172
Period size: 27 Copynumber: 6.8 Consensus size: 26
60733961 TAATTCTGTA
*
60733971 AATCGAGGGTACTTTGGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
*
60733997 AAGTCGAGGGTATTTTAGTAATTTTAC
1 AA-TCGAGGGTATTTTGGTAATTTTAC
* ** *
60734024 AAGTTGAGGGTATTTCAGTAATTTCAC
1 AA-TCGAGGGTATTTTGGTAATTTTAC
60734051 AAATC-AGAGGTATTTTGGTAATTTTAC
1 -AATCGAG-GGTATTTTGGTAATTTTAC
* *
60734078 AAACTAGGAGTATTTTGGTAATTTTAC
1 AATCGAGG-GTATTTTGGTAATTTTAC
* * * *
60734105 AAACCAGGGGTATTCTGGTAATTTTATA
1 AATCGA-GGGTATTTTGGTAATTTTA-C
* *
60734133 AACCAAGGGTATTTTGGTAATT
1 AATCGAGGGTATTTTGGTAATT
60734155 CTACCCTACA
Statistics
Matches: 135, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.06
27 119 0.88
28 8 0.06
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (26 bp):
AATCGAGGGTATTTTGGTAATTTTAC
Found at i:60734116 original size:81 final size:82
Alignment explanation
Indices: 60733970--60734154 Score: 202
Period size: 81 Copynumber: 2.3 Consensus size: 82
60733960 GTAATTCTGT
* * ***
60733970 AAATC-GAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAGTTGAGGG
1 AAATCAGAGGGTATTTTGGTAATTTTACAAGACGAGGGTATTTTAGTAATTTTACAACCAGAGGG
60734034 TATT-TCAGTAATTTCAC
66 TATTCT-AGTAATTTCAC
* *
60734051 AAATCAGA-GGTATTTTGGTAATTTTACAA-ACTAGGAGTATTTTGGTAATTTTACAAACCAG-G
1 AAATCAGAGGGTATTTTGGTAATTTTACAAGACGAGG-GTATTTTAGTAATTTTAC-AACCAGAG
* * *
60734113 GGTATTCTGGTAATTTTAT
64 GGTATTCTAGTAATTTCAC
*
60734132 AAACCA-AGGGTATTTTGGTAATT
1 AAATCAGAGGGTATTTTGGTAATT
60734155 CTACCCTACA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
80 5 0.06
81 77 0.88
82 6 0.07
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (82 bp):
AAATCAGAGGGTATTTTGGTAATTTTACAAGACGAGGGTATTTTAGTAATTTTACAACCAGAGGG
TATTCTAGTAATTTCAC
Found at i:60734180 original size:54 final size:54
Alignment explanation
Indices: 60734062--60734181 Score: 136
Period size: 54 Copynumber: 2.2 Consensus size: 54
60734052 AATCAGAGGT
* * *
60734062 ATTTTGGTAATTTTACAAACTAGGAGTATTTTGGTAATTTTACAAACCAGGGGT
1 ATTTTGGTAATTTTACAAACAAGGAGTATTTTGGTAATTCTACAAACCAGGGGC
* * **
60734116 ATTCTGGTAATTTTATAAACCAAGG-GTATTTTGGTAATTCTACCCTA-CAGGGGC
1 ATTTTGGTAATTTTACAAA-CAAGGAGTATTTTGGTAATTCTA-CAAACCAGGGGC
*
60734170 ATTTTAGTAATT
1 ATTTTGGTAATT
60734182 CTACCCTACA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
54 49 0.89
55 6 0.11
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (54 bp):
ATTTTGGTAATTTTACAAACAAGGAGTATTTTGGTAATTCTACAAACCAGGGGC
Found at i:60734217 original size:26 final size:27
Alignment explanation
Indices: 60734136--60734217 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
60734126 TTTTATAAAC
*
60734136 CAAGGGTATTTTGGTAATTCTACCCTA
1 CAAGGGTATTTTAGTAATTCTACCCTA
* *
60734163 CAGGGGCATTTTAGTAATTCTACCCTA
1 CAAGGGTATTTTAGTAATTCTACCCTA
* *
60734190 CAAGGGTATTTCAGTAA-TCTAGCCTA
1 CAAGGGTATTTTAGTAATTCTACCCTA
60734216 CA
1 CA
60734218 GATATGAGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 10 0.21
27 38 0.79
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTCTACCCTA
Found at i:60736652 original size:67 final size:67
Alignment explanation
Indices: 60736581--60736715 Score: 243
Period size: 67 Copynumber: 2.0 Consensus size: 67
60736571 CATCAAACAT
*
60736581 AAATTATTTTTCATTACTGAATGCCAATTCGTAATTTGCTTCTAATTATTACAATTATTTATAAA
1 AAATTATTTTTCATTACTGAATGCCAATTCATAATTTGCTTCTAATTATTACAATTATTTATAAA
60736646 TC
66 TC
* *
60736648 AAATTATTTTTCATTACTGAATGCCGATTCATAATTTGCTTCTAATTATTACAATTATTTATTAA
1 AAATTATTTTTCATTACTGAATGCCAATTCATAATTTGCTTCTAATTATTACAATTATTTATAAA
60736713 TC
66 TC
60736715 A
1 A
60736716 CATATATTGA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.34, C:0.13, G:0.06, T:0.47
Consensus pattern (67 bp):
AAATTATTTTTCATTACTGAATGCCAATTCATAATTTGCTTCTAATTATTACAATTATTTATAAA
TC
Found at i:60742237 original size:43 final size:43
Alignment explanation
Indices: 60742171--60742431 Score: 276
Period size: 43 Copynumber: 6.1 Consensus size: 43
60742161 ATTTTGTATA
* * * * *
60742171 ATGCCAACATCCCTGATGTGGTCTTACATGTAATCTCATTTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * *
60742214 ATGCC-ACTGTCCCAGATAG-GGTCTTAC-TCTTAAACACATATCG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACAT-GTAATCACATATCG
* ** * *
60742257 ATGCCAACATCCCAGACGTGGTCTTACACCTAATCATATATAG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* **
60742300 ATGCCAACGTCCCTGACGTGGTCTTACACATAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * *
60742343 ATGCCAACATCCCAGACGTTGTCTTACATGTAATCACATATAG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * *
60742386 ATGCCAATGTCCCAAATGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
60742429 ATG
1 ATG
60742432 TCTCATATAC
Statistics
Matches: 181, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
42 4 0.02
43 174 0.96
44 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
Found at i:60742269 original size:86 final size:86
Alignment explanation
Indices: 60742171--60742431 Score: 314
Period size: 86 Copynumber: 3.0 Consensus size: 86
60742161 ATTTTGTATA
* * * *
60742171 ATGCCAACATCCCTGATGTGGTCTTACATGTAATCTCATTTCGATGCCACTGTCCCAGATAG-GG
1 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCTCATATAGATGCCACTGTCCCAGAT-GTGG
* *
60742235 TCTTACTCTTAAACACATATCG
65 TCTTACTCATAATCACATATCG
** * *
60742257 ATGCCAACATCCCAGACGTGGTCTTACACCTAATCAT-ATATAGATGCCAAC-GTCCCTGACGTG
1 ATGCCAACATCCCAGACGTGGTCTTACATGTAATC-TCATATAGATGCC-ACTGTCCCAGATGTG
*
60742320 GTCTTACACATAATCACATATCG
64 GTCTTACTCATAATCACATATCG
* * * *
60742343 ATGCCAACATCCCAGACGTTGTCTTACATGTAATCACATATAGATGCCAATGTCCCAAATGTGGT
1 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCTCATATAGATGCCACTGTCCCAGATGTGGT
*
60742408 CTTACAT-GTAATCACATATCG
66 CTTAC-TCATAATCACATATCG
60742429 ATG
1 ATG
60742432 TCTCATATAC
Statistics
Matches: 148, Mismatches: 21, Indels: 12
0.82 0.12 0.07
Matches are distributed among these distances:
85 2 0.01
86 143 0.97
87 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (86 bp):
ATGCCAACATCCCAGACGTGGTCTTACATGTAATCTCATATAGATGCCACTGTCCCAGATGTGGT
CTTACTCATAATCACATATCG
Found at i:60742544 original size:2 final size:2
Alignment explanation
Indices: 60742537--60742582 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
60742527 ATATAGTCGA
* * *
60742537 AT AT AT AT AT CT AT AT CT AT AT CT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60742579 AT AT
1 AT AT
60742583 CCATGATTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60742552 original size:12 final size:12
Alignment explanation
Indices: 60742537--60742583 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
60742527 ATATAGTCGA
60742537 ATATATATATCT
1 ATATATATATCT
*
60742549 ATATCTATATCT
1 ATATATATATCT
*
60742561 ATATATATATAT
1 ATATATATATCT
60742573 ATATATATATC
1 ATATATATATC
60742584 CATGATTCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (12 bp):
ATATATATATCT
Found at i:60747762 original size:40 final size:40
Alignment explanation
Indices: 60747703--60747956 Score: 343
Period size: 40 Copynumber: 6.3 Consensus size: 40
60747693 CTAACGGGGT
* * *
60747703 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTCCGGGC
* *
60747743 TAAGTCCCGAAGGCCTTTGT-CTGAGTTATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCT-AGTTACTAATTCCGGGC
*
60747783 TAAGTCCCAAAGGCATTTGTGCTAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTCCGGGC
* *
60747823 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTCCGGGC
*
60747863 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTTACTAAT-TCCGGGC
* * *
60747903 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCTAGTTACTAAT-TCCGGGC
*
60747943 TAAGACCCGAAGGC
1 TAAGTCCCGAAGGC
60747957 CTTGTGCAAG
Statistics
Matches: 196, Mismatches: 14, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 4 0.02
40 190 0.97
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTCCGGGC
Found at i:60747976 original size:39 final size:40
Alignment explanation
Indices: 60747776--60747979 Score: 155
Period size: 40 Copynumber: 5.1 Consensus size: 40
60747766 AGTTATTAAT
* * * * * *
60747776 TCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTTACTA-A
1 TCCGGACTAAGACCCGAAGGCACTTGTGCAAGTGACTATA
* * * * *
60747815 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
1 -TCCGGACTAAGACCCGAAGGCACTTGTGCAAGTGACTATA
* * * *
60747855 TTCC-GAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGA-CTAAGACCCGAAGGCACTTGTGCAAGTGACTATA
* * * * *
60747896 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCATA
1 TCCGGACTAAGACCCGAAGGCACTTGTGCAAGTGACTATA
**
60747936 TCCGGACTAAGACCCGAAGGC-CTTGTGCAAGTGGTTATA
1 TCCGGACTAAGACCCGAAGGCACTTGTGCAAGTGACTATA
60747975 TCCGG
1 TCCGG
60747980 GTAAATCCCG
Statistics
Matches: 147, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 19 0.13
40 126 0.86
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGACCCGAAGGCACTTGTGCAAGTGACTATA
Found at i:60755646 original size:40 final size:40
Alignment explanation
Indices: 60755597--60755748 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
60755587 ACAACCACAA
* * *** *
60755597 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
60755637 GCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
60755677 GCACGAA-TGCCTTCGGGTCTTAGCCCGGACATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
60755717 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
60755749 CATTCAAATG
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 92 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:60757799 original size:54 final size:54
Alignment explanation
Indices: 60757728--60757877 Score: 230
Period size: 54 Copynumber: 2.8 Consensus size: 54
60757718 TCCTCAAGCA
* *
60757728 ATGCCATAGTCCCAGACTAGGTCTTACACTATGTGGTCTTCGT-ATCCCCATATG
1 ATGCCATAGTACCAGACTAGGTCTTACACTATATGGTCTTC-TCATCCCCATATG
**
60757782 ATGCCATAGTATTAGACTAGGTCTTACACTATATGGTCTTCTCATCCCCATATG
1 ATGCCATAGTACCAGACTAGGTCTTACACTATATGGTCTTCTCATCCCCATATG
* *
60757836 ATGCCATAGTCCCAGACTAGGTCTTACACTATACGGTCTTCT
1 ATGCCATAGTACCAGACTAGGTCTTACACTATATGGTCTTCT
60757878 TGCCATGGCC
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 1 0.01
54 86 0.99
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.33
Consensus pattern (54 bp):
ATGCCATAGTACCAGACTAGGTCTTACACTATATGGTCTTCTCATCCCCATATG
Found at i:60761447 original size:48 final size:47
Alignment explanation
Indices: 60761365--60761567 Score: 127
Period size: 48 Copynumber: 4.4 Consensus size: 47
60761355 ATATCTATGT
* * *
60761365 CATATCCCAGATATGGTCTTATAC-AAAGTTTCATATTGGTGCCGATGC
1 CATATCCCAGACATGGTCTTATACGGAA--CTCATATTGGTGCCGATGC
*
60761413 CATATCCCAGACATGGTCTTATACGGGACCTCATA----T--CGATGC
1 CATATCCCAGACATGGTCTTATAC-GGAACTCATATTGGTGCCGATGC
* * * * * *
60761455 CAT-GCCCAGACATTGTCTTATAC-GAACTGACTTAATGATGCCGAAGC
1 CATATCCCAGACATGGTCTTATACGGAACT--CATATTGGTGCCGATGC
* * * * * * *
60761502 CAGATCCCTGATATGGTCTTATACAGGATCACATATCGGTGCCAATGC
1 CATATCCCAGACATGGTCTTATAC-GGAACTCATATTGGTGCCGATGC
*
60761550 CATGTCCCAGACATGGTC
1 CATATCCCAGACATGGTC
60761568 CTACACTAGC
Statistics
Matches: 116, Mismatches: 26, Indels: 26
0.69 0.15 0.15
Matches are distributed among these distances:
39 4 0.03
41 21 0.18
42 9 0.08
44 1 0.01
45 1 0.01
47 7 0.06
48 69 0.59
50 4 0.03
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (47 bp):
CATATCCCAGACATGGTCTTATACGGAACTCATATTGGTGCCGATGC
Found at i:60761586 original size:48 final size:49
Alignment explanation
Indices: 60761514--60761719 Score: 229
Period size: 49 Copynumber: 4.2 Consensus size: 49
60761504 GATCCCTGAT
* * * **
60761514 ATGGTCTTATACAGGATCACATATCGG-TGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACACTGGCTCACATATCGGATGCCAACACCATGTCCCAGAC
* * * * * *
60761562 ATGGTCCTACACTAGCACACATATC-AACGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACACTGGCTCACATATCGGATGCCAACACCATGTCCCAGAC
* * * *
60761610 ATGGTCTTACACTGGCTCTCATCTCGGATGTCGACACCATGTCCCAGAC
1 ATGGTCTTACACTGGCTCACATATCGGATGCCAACACCATGTCCCAGAC
* *
60761659 ATGGTCTTACACTGGCTCTCATCTCGGATGCCGAA-ACCATGTCCCAGAC
1 ATGGTCTTACACTGGCTCACATATCGGATGCC-AACACCATGTCCCAGAC
60761708 ATGGTCTTACAC
1 ATGGTCTTACAC
60761720 GGGATCTTAT
Statistics
Matches: 134, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
48 58 0.43
49 75 0.56
50 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (49 bp):
ATGGTCTTACACTGGCTCACATATCGGATGCCAACACCATGTCCCAGAC
Found at i:60766052 original size:38 final size:38
Alignment explanation
Indices: 60765993--60766100 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
60765983 TCAATCATGC
*
60765993 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
60766032 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
60766070 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
60766101 ACTGGGCCGA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
38 55 0.83
39 11 0.17
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:60766058 original size:31 final size:31
Alignment explanation
Indices: 60766016--60766117 Score: 132
Period size: 31 Copynumber: 3.1 Consensus size: 31
60766006 CCTTTTCATA
60766016 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
60766053 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
60766085 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
60766116 TT
1 TT
60766118 ACTGTAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
31 32 0.51
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.44
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:60766359 original size:24 final size:24
Alignment explanation
Indices: 60766308--60766425 Score: 152
Period size: 24 Copynumber: 4.9 Consensus size: 24
60766298 GCTTTATCAT
* *
60766308 ATAACTGGAGGC-TTAGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTCA
60766333 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTCA
*
60766357 ATAACTGGGGCATAAGCCCTTT-T
1 ATAACTGGGGCATAAGCCCTTTCA
*
60766380 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTCA
60766404 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
60766426 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTCA
Found at i:60766387 original size:47 final size:48
Alignment explanation
Indices: 60766308--60766426 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
60766298 GCTTTATCAT
*
60766308 ATAACTGGAGGC-TTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
60766357 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
60766404 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60766427 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 8 0.12
49 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:60766502 original size:20 final size:20
Alignment explanation
Indices: 60766477--60766536 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
60766467 TATGATTACC
60766477 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
60766497 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
60766517 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
60766537 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:60766610 original size:25 final size:25
Alignment explanation
Indices: 60766578--60766625 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
60766568 ATACATAAAC
* *
60766578 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
60766603 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
60766626 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:60770555 original size:38 final size:38
Alignment explanation
Indices: 60770496--60770603 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
60770486 TCAATCATGC
*
60770496 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
60770535 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
60770573 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
60770604 ACTGGGCCGA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
38 55 0.83
39 11 0.17
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:60770561 original size:31 final size:31
Alignment explanation
Indices: 60770519--60770620 Score: 132
Period size: 31 Copynumber: 3.1 Consensus size: 31
60770509 CCTTTTCATA
60770519 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
60770556 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
60770588 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
60770619 TT
1 TT
60770621 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
31 32 0.51
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.44
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:60770858 original size:24 final size:24
Alignment explanation
Indices: 60770812--60770930 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
60770802 GCTTTATCAT
*
60770812 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
60770837 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
60770861 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
60770884 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
60770908 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60770931 TCACTTCCCA
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:60770891 original size:47 final size:48
Alignment explanation
Indices: 60770812--60770930 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
60770802 GCTTTATCAT
*
60770812 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
60770861 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
60770908 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60770931 TCACTTCCCA
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:60771004 original size:20 final size:20
Alignment explanation
Indices: 60770979--60771038 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
60770969 TATGATTACC
60770979 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
60770999 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
60771019 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
60771039 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:60771113 original size:25 final size:25
Alignment explanation
Indices: 60771081--60771128 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60771071 ATACATAAAC
* * *
60771081 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
60771106 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
60771129 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:60773075 original size:39 final size:39
Alignment explanation
Indices: 60773032--60773264 Score: 358
Period size: 39 Copynumber: 6.0 Consensus size: 39
60773022 GGATGTTACA
60773032 ATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATAT
1 ATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATAT
* * * *
60773071 ATCCGGGCCAAAGACCCGCAAGCTTCGTGCTGGAAATGT
1 ATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATAT
*
60773110 ATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATAT
1 ATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATAT
* * * *
60773149 ATCCGAGCCAAAGACCCGCAGGCTTCGTGCTGGAAATGT
1 ATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATAT
*
60773188 ATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATGT
1 ATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATAT
* *
60773227 ATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTAATA
1 ATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATA
60773265 AAATTTTGGG
Statistics
Matches: 174, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 174 1.00
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (39 bp):
ATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATAT
Found at i:60773238 original size:117 final size:117
Alignment explanation
Indices: 60773032--60773264 Score: 394
Period size: 117 Copynumber: 2.0 Consensus size: 117
60773022 GGATGTTACA
* * *
60773032 ATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCCGCAAGCTTC
1 ATCCGAGCCAAAGACCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGACCCGCAAGCTTC
60773097 GTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATAT
66 GTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATAT
* * * *
60773149 ATCCGAGCCAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTT
1 ATCCGAGCCAAAGACCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGACCCGCAAGCTTC
*
60773214 GTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTAATA
66 GTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATA
60773265 AAATTTTGGG
Statistics
Matches: 108, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 108 1.00
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (117 bp):
ATCCGAGCCAAAGACCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGACCCGCAAGCTTC
GTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATAT
Found at i:60775169 original size:49 final size:49
Alignment explanation
Indices: 60775106--60775244 Score: 215
Period size: 49 Copynumber: 2.8 Consensus size: 49
60775096 CATATCAAAA
* *
60775106 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAGATG
1 CTGATGCCATGTCCCAGACATGGTCTTACACAGGATCTCATCTCAGATG
* * *
60775155 TTGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATCTCGGATG
1 CTGATGCCATGTCCCAGACATGGTCTTACACAGGATCTCATCTCAGATG
* *
60775204 CCGATACCATGTCCCAGACATGGTCTTACACAGGATCTCAT
1 CTGATGCCATGTCCCAGACATGGTCTTACACAGGATCTCAT
60775245 TAAATATGGT
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 82 1.00
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (49 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACAGGATCTCATCTCAGATG
Found at i:60779946 original size:37 final size:37
Alignment explanation
Indices: 60779850--60779949 Score: 164
Period size: 37 Copynumber: 2.7 Consensus size: 37
60779840 ATAGTCCCCT
* *
60779850 CACGTAGTTATCGGGTCTTACCAGGACAAAATCTCCA
1 CACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCA
* *
60779887 TACGTAGTCATCGGGTCTTACCCGGACATAATCTCCA
1 CACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCA
60779924 CACGTAGTCATCGGGTCTTACCCGGA
1 CACGTAGTCATCGGGTCTTACCCGGA
60779950 ATATATTTCC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (37 bp):
CACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCA
Found at i:60780147 original size:48 final size:48
Alignment explanation
Indices: 60780089--60780228 Score: 262
Period size: 48 Copynumber: 2.9 Consensus size: 48
60780079 ATATACACAC
*
60780089 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60780137 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
60780185 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
60780229 TGTGACAGCC
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:60782080 original size:39 final size:39
Alignment explanation
Indices: 60781893--60782073 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 39
60781883 AATGATGTCC
* * *
60781893 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AACCG
* *
60781933 GACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAATCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA-CCG
*
60781973 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA-CCG
* *
60782013 GGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA-CG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AACCG
*
60782052 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
60782074 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
39 23 0.19
40 92 0.74
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAACCG
Found at i:60783526 original size:48 final size:48
Alignment explanation
Indices: 60783455--60783563 Score: 200
Period size: 48 Copynumber: 2.3 Consensus size: 48
60783445 CGGGGTGTTA
*
60783455 CACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
1 CACATATATATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
60783503 CACATATATATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
1 CACATATATATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
*
60783551 CACACATATATAT
1 CACATATATATAT
60783564 ATTTATCTTG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
CACATATATATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
Found at i:60787094 original size:268 final size:269
Alignment explanation
Indices: 60786616--60787152 Score: 1004
Period size: 268 Copynumber: 2.0 Consensus size: 269
60786606 CAATACGCTC
60786616 AGTAATCTCGTACGGTCCAATGAACCTCAGACTCAATTTGCCTTTTTCTACCGAATCGAAACACT
1 AGTAATCTCGTACGGTCCAATGAACCTCAGACTCAATTTGCCTTTTTCTACCGAATCGAAACACT
60786681 TTCTTCCACGGAGATACCTTTAAAAATACTTTGTTGCCGATCTCAAATTCAATATCTTTTCTTTT
66 TTCTTCCACGGAGATACCTTTAAAAATACTTTGTTGCCGATCTCAAATTCAATATCTTTTCTTTT
* * *
60786746 CAAATCTGCATATGATTTCTGACGATCAGAAGTTGTTTTCAGACTATCTCGGATCACTTTCACTT
131 CAAATCTGCATATGATTTCTGACAATCAGAAGCTGTTTTCAGACTATCTCGGACCACTTTCACTT
60786811 TCTATTCAGTTTCTTTAATCAAATCAATCCCATGAATCTTATTTTCGTTAAGCTCCATCCAATAC
196 TCTATTCAGTTTCTTTAATCAAATCAATCCCATGAATCTTATTTTCGTTAAGCTCCATCCAATAC
60786876 AAAGGTGTA
261 AAAGGTGTA
*
60786885 AGTAATCTCGTACGGTCCAATGAACCTCAGACTCAATTTGCC-TTTTCTACCGAATCGAAGCACT
1 AGTAATCTCGTACGGTCCAATGAACCTCAGACTCAATTTGCCTTTTTCTACCGAATCGAAACACT
*
60786949 TTCTTCCATGGAGATACCTTTAAAAATACTTTGTTGCCGATCTCAAATTCAATATCTTTTCTTTT
66 TTCTTCCACGGAGATACCTTTAAAAATACTTTGTTGCCGATCTCAAATTCAATATCTTTTCTTTT
60787014 CAAATCTGCATATGATTTCTGACAATCAGAAGCTGTTTTCAGACTATCTCGGACCACTTTCACTT
131 CAAATCTGCATATGATTTCTGACAATCAGAAGCTGTTTTCAGACTATCTCGGACCACTTTCACTT
* *
60787079 TCTATTTAGTTTCTTTAATCAAATCAATCCCATGAATCTTATTTTCGTTAAGCTCCGTCCAATAC
196 TCTATTCAGTTTCTTTAATCAAATCAATCCCATGAATCTTATTTTCGTTAAGCTCCATCCAATAC
60787144 AAAGGTGTA
261 AAAGGTGTA
60787153 CGGCATTTGT
Statistics
Matches: 261, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
268 219 0.84
269 42 0.16
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (269 bp):
AGTAATCTCGTACGGTCCAATGAACCTCAGACTCAATTTGCCTTTTTCTACCGAATCGAAACACT
TTCTTCCACGGAGATACCTTTAAAAATACTTTGTTGCCGATCTCAAATTCAATATCTTTTCTTTT
CAAATCTGCATATGATTTCTGACAATCAGAAGCTGTTTTCAGACTATCTCGGACCACTTTCACTT
TCTATTCAGTTTCTTTAATCAAATCAATCCCATGAATCTTATTTTCGTTAAGCTCCATCCAATAC
AAAGGTGTA
Found at i:60792847 original size:42 final size:43
Alignment explanation
Indices: 60792747--60792850 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 43
60792737 AATGTCGACA
* *** *
60792747 TCCCAGACGTGGTCTTACATGTAATCAAACATTGATACCACTG
1 TCCCAGACATGGTCTTACAAAAAATCAAACATTGATACCAATG
* * * * *
60792790 TCCCAAACAGGGTCTTACAAAAAATCAGATA-TGATGCCAATG
1 TCCCAGACATGGTCTTACAAAAAATCAAACATTGATACCAATG
60792832 TCCCAGACATGGTCTTACA
1 TCCCAGACATGGTCTTACA
60792851 CGCAAAACAG
Statistics
Matches: 49, Mismatches: 12, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
42 26 0.53
43 23 0.47
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACAAAAAATCAAACATTGATACCAATG
Found at i:60795424 original size:78 final size:78
Alignment explanation
Indices: 60795335--60795494 Score: 189
Period size: 78 Copynumber: 2.1 Consensus size: 78
60795325 TTAAACCCTG
* * * * * *
60795335 TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCTAGCACGTAGCCTGCG
1 TATAATACCAGCAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCG
*
60795398 GACCTTAAGTCTCGA
64 GACCCTAAGTCTCGA
* * *
60795413 TATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
*
60795478 CCCTAAGTCTGGA
66 CCCTAAGTCTCGA
60795491 TATA
1 TATA
60795495 CATCACTAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
77 4 0.06
78 65 0.94
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
CCCTAAGTCTCGA
Found at i:60795426 original size:39 final size:39
Alignment explanation
Indices: 60795383--60795494 Score: 181
Period size: 39 Copynumber: 2.9 Consensus size: 39
60795373 ACATATTTCT
* *
60795383 AGCACGTAGCCTGCGGACCTTAAGTCTCGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCTCGATATAATTCC
60795422 AGCACATAGCCTGCGGACCCTAAGTC-CGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCTC-GATATAATTCC
*
60795461 AGCACATAGCCTGCGGACCCTAAGTCTGGATATA
1 AGCACATAGCCTGCGGACCCTAAGTCTCGATATA
60795495 CATCACTAAA
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 67 0.99
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCCTAAGTCTCGATATAATTCC
Found at i:60808848 original size:46 final size:48
Alignment explanation
Indices: 60808742--60808861 Score: 138
Period size: 48 Copynumber: 2.5 Consensus size: 48
60808732 TGTCTTCGAC
** * *
60808742 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
60808790 ATAGG-CTTACATGGCTCATTCTTGTCTCCAAAGCCATATA-A-CTGAT
1 AT-GGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
60808836 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
60808862 CCGTCCTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
45 2 0.03
46 24 0.39
47 1 0.02
48 32 0.52
49 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:60815482 original size:19 final size:19
Alignment explanation
Indices: 60815458--60815521 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
60815448 AAAAGGTATG
60815458 TGTTATATAGATGAATTAC
1 TGTTATATAGATGAATTAC
** *
60815477 TGTTATACGGATGAGTTAC
1 TGTTATATAGATGAATTAC
*
60815496 TGTTATCA-A-ATGAATTAT
1 TGTTAT-ATAGATGAATTAC
60815514 TGTT-TATA
1 TGTTATATA
60815522 TGATTGAGAG
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
16 1 0.03
17 2 0.05
18 11 0.30
19 22 0.59
20 1 0.03
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.44
Consensus pattern (19 bp):
TGTTATATAGATGAATTAC
Found at i:60817004 original size:46 final size:46
Alignment explanation
Indices: 60816950--60817124 Score: 171
Period size: 47 Copynumber: 3.8 Consensus size: 46
60816940 ATGGTTGAGC
*
60816950 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--AATGT-AACTAG
* * *
60816997 -TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAATGTAACTA-G
* * *
60817042 CATCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAATGTAACTA-G
* *
60817089 CATCCAAACTCGTTGAGTTGAGCCCGAGTTCACTTA
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60817125 TGGATGCGAA
Statistics
Matches: 113, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 28 0.25
47 73 0.65
48 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAATGTAACTAG
Found at i:60817070 original size:47 final size:47
Alignment explanation
Indices: 60817001--60817119 Score: 229
Period size: 47 Copynumber: 2.5 Consensus size: 47
60816991 TGAATGTCTG
60817001 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCA
60817048 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCA
*
60817095 AACTCGTTGAGTTGAGCCCGAGTTC
1 AACTCGTTGAGTTGAGTCCGAGTTC
60817120 ACTTATGGAT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (47 bp):
AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCA
Found at i:60819563 original size:40 final size:40
Alignment explanation
Indices: 60819395--60819602 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
60819385 CATTGGAATG
*
60819395 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
* * *
60819435 ATATTCGGGCTAAGATCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
* * * *
60819475 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
* * * * **
60819515 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
* * * * * * * *
60819555 ATAACCGGGCTAGGTCTCGAAGACAATCGAGCGAGTCGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
60819595 ATATCCGG
1 ATATCCGG
60819603 TTAAATCCCG
Statistics
Matches: 140, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
Found at i:60820794 original size:17 final size:18
Alignment explanation
Indices: 60820752--60820800 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
60820742 AGTTGAAAAG
60820752 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
60820771 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
60820788 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
60820801 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:60821684 original size:40 final size:40
Alignment explanation
Indices: 60821618--60821784 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
60821608 AAATTGAATG
* * *
60821618 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
60821657 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
60821697 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
60821737 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
60821777 ATATCCGG
1 ATATCCGG
60821785 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:60829704 original size:39 final size:40
Alignment explanation
Indices: 60829581--60829746 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
60829571 AAATTGAATG
* * *
60829581 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
60829620 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
60829660 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
60829699 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
60829739 ATATCCGG
1 ATATCCGG
60829747 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:60829713 original size:79 final size:79
Alignment explanation
Indices: 60829581--60829730 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
60829571 AAATTGAATG
*
60829581 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
60829646 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
60829660 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
60829723 ATTTGTGC
64 AATTGTGC
60829731 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:60835311 original size:46 final size:46
Alignment explanation
Indices: 60835261--60835430 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
60835251 TTGAGCATCC
60835261 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * * *
60835307 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
* * * * *
60835354 AAACTCGTTGAGTTGAGCCCAAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* *
60835400 GAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60835431 GGGGCGGATT
Statistics
Matches: 95, Mismatches: 20, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 53 0.56
47 25 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:60835414 original size:93 final size:93
Alignment explanation
Indices: 60835255--60835425 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
60835245 GGATGGTTGA
* * * * *
60835255 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGCCCAAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
60835320 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
60835348 GCATCCAAACTCGTTGAGTTGAGCCCAAGTTCACTTATGGATGCGAACGCCTGAGCTTGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGCCCAAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
60835413 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60835426 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGCCCAAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:60844172 original size:38 final size:38
Alignment explanation
Indices: 60844121--60844203 Score: 141
Period size: 38 Copynumber: 2.2 Consensus size: 38
60844111 TTTATTCGAC
*
60844121 GTATGGGGCATTGACTTCTTAGGC-CTGTTTCTTTCTTT
1 GTATGGGGCATTGACTTCTTAGGCAC-GTTTCCTTCTTT
60844159 GTATGGGGCATTGACTTCTTAGGCACGTTTCCTTCTTT
1 GTATGGGGCATTGACTTCTTAGGCACGTTTCCTTCTTT
60844197 GTATGGG
1 GTATGGG
60844204 AACAAATACA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
38 42 0.98
39 1 0.02
ACGTcount: A:0.12, C:0.18, G:0.27, T:0.43
Consensus pattern (38 bp):
GTATGGGGCATTGACTTCTTAGGCACGTTTCCTTCTTT
Found at i:60847379 original size:11 final size:11
Alignment explanation
Indices: 60847365--60847400 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
60847355 GAGTATCCTT
60847365 TGAATGTTATA
1 TGAATGTTATA
60847376 TGAATGTTATA
1 TGAATGTTATA
*
60847387 TGAATGTTACA
1 TGAATGTTATA
60847398 TGA
1 TGA
60847401 CTAACTTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.42
Consensus pattern (11 bp):
TGAATGTTATA
Found at i:60848518 original size:27 final size:27
Alignment explanation
Indices: 60848495--60848629 Score: 143
Period size: 27 Copynumber: 5.0 Consensus size: 27
60848485 CAAAATTATT
* *
60848495 GAAATATCCTTGTAGGGTAGAATTACT
1 GAAATATCCCTGTAGGGTAGAATTACC
*
60848522 GAAATA-CCGCTGTAGGGTAAAATTACC
1 GAAATATCC-CTGTAGGGTAGAATTACC
*
60848549 GAAATA-CCCTTGTAGGGTAGAAATACC
1 GAAATATCCC-TGTAGGGTAGAATTACC
*
60848576 GAAATATCCCTGTAAGGTAGAATTACC
1 GAAATATCCCTGTAGGGTAGAATTACC
* *
60848603 GAGATA-CCCTTGT-GGGATAAAATTACC
1 GAAATATCCC-TGTAGGG-TAGAATTACC
60848630 ATTTTTCCCT
Statistics
Matches: 93, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
26 8 0.09
27 82 0.88
28 3 0.03
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
GAAATATCCCTGTAGGGTAGAATTACC
Found at i:60848544 original size:54 final size:54
Alignment explanation
Indices: 60848486--60848615 Score: 172
Period size: 54 Copynumber: 2.4 Consensus size: 54
60848476 CTCGGTTTAC
** * * * *
60848486 AAAATTATTGAAATATCCTTGTAGGGTAGAATTACTGAAATA-CCGCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATATCC-CTGTAAGGT
60848540 AAAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATATCCCTGTAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATATCCCTGTAAGGT
* *
60848594 AGAATTACCGAGATACCCTTGT
1 AAAATTACCGAAATACCCTTGT
60848616 GGGATAAAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 65 0.97
55 2 0.03
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (54 bp):
AAAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATATCCCTGTAAGGT
Found at i:60849194 original size:22 final size:22
Alignment explanation
Indices: 60849142--60849204 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
60849132 GCCAATTATT
60849142 CTGATTATGGCTTTGCT-CCAAC
1 CTGATTATGGCTTTG-TGCCAAC
*
60849164 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
* *
60849186 TTGATTATGGCTGTGTGCC
1 CTGATTATGGCTTTGTGCC
60849205 GTTATTGTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 2 0.06
22 31 0.91
23 1 0.03
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:60849455 original size:6 final size:6
Alignment explanation
Indices: 60849446--60849561 Score: 67
Period size: 6 Copynumber: 18.8 Consensus size: 6
60849436 TTGCATTCAC
* * * * *
60849446 ATTCTG ATTCTG ATTCTG -TTACCTA ATACTG ATTCTG ATTATG -TCACTTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT-TC-TG
* * *
60849496 ATTCTG ATTCTA ATTTTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
60849545 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
60849562 AGTTTTGGTA
Statistics
Matches: 81, Mismatches: 20, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
5 4 0.05
6 67 0.83
7 7 0.09
8 3 0.04
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:60849477 original size:25 final size:25
Alignment explanation
Indices: 60849449--60849506 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
60849439 CATTCACATT
* *
60849449 CTGATTCTGATTCTGTTACCTAATA
1 CTGATTCTGATTATGTCACCTAATA
* *
60849474 CTGATTCTGATTATGTCACTTAATT
1 CTGATTCTGATTATGTCACCTAATA
60849499 CTGATTCT
1 CTGATTCT
60849507 AATTTTGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTATGTCACCTAATA
Found at i:60849559 original size:37 final size:37
Alignment explanation
Indices: 60849468--60849561 Score: 107
Period size: 37 Copynumber: 2.5 Consensus size: 37
60849458 ATTCTGTTAC
* * * *
60849468 CTAATACTGATTCTGATTATGTCACTTAATTCTGATT
1 CTAATTCTCATTCTGATTCTGTCACCTAATTCTGATT
* * *
60849505 CTAATTTTGATTCTGATTCTGTCACCTGATTCTGATT
1 CTAATTCTCATTCTGATTCTGTCACCTAATTCTGATT
* *
60849542 CTGATTCTCATTTTGATTCT
1 CTAATTCTCATTCTGATTCT
60849562 AGTTTTGGTA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (37 bp):
CTAATTCTCATTCTGATTCTGTCACCTAATTCTGATT
Found at i:60856156 original size:29 final size:29
Alignment explanation
Indices: 60856123--60856225 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
60856113 GTTGAGAGAT
*
60856123 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
60856152 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
60856181 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
60856210 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60856226 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:60859393 original size:186 final size:186
Alignment explanation
Indices: 60859079--60859454 Score: 743
Period size: 186 Copynumber: 2.0 Consensus size: 186
60859069 ACTATCTACA
60859079 TTAAATGATTTTATACAATAGAGACCTTCAAATAACATAGGTTAGTGTTTTAAGCCAATTCCTAG
1 TTAAATGATTTTATACAATAGAGACCTTCAAATAACATAGGTTAGTGTTTTAAGCCAATTCCTAG
60859144 CAACTTAATAACAATTAAACGAGTCTCCATACATGCCAAAGACTTAAAATACTTTAAAACCTTTA
66 CAACTTAATAACAATTAAACGAGTCTCCATACATGCCAAAGACTTAAAATACTTTAAAACCTTTA
60859209 TGTATCGATCAATAGTTTGATAGTGTGATTTAGCCTCTAGCAACCTCCAACTCGAG
131 TGTATCGATCAATAGTTTGATAGTGTGATTTAGCCTCTAGCAACCTCCAACTCGAG
60859265 TTAAATGATTTTATACAATAGAGACCTTCAAATAACATAGGTTAGTGTTTTAAGCCAATTCCTAG
1 TTAAATGATTTTATACAATAGAGACCTTCAAATAACATAGGTTAGTGTTTTAAGCCAATTCCTAG
60859330 CAACTTAATAACAATTAAACGAGTCTCCATACATGCCAAAGACTTAAAATACTTTAAAACCTTTA
66 CAACTTAATAACAATTAAACGAGTCTCCATACATGCCAAAGACTTAAAATACTTTAAAACCTTTA
*
60859395 TGTATCGATCAATAGTTTGATAGTGTGATTTAGCCTCTGGCAACCTCCAACTCGAG
131 TGTATCGATCAATAGTTTGATAGTGTGATTTAGCCTCTAGCAACCTCCAACTCGAG
60859451 TTAA
1 TTAA
60859455 CATATGCTAC
Statistics
Matches: 189, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
186 189 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (186 bp):
TTAAATGATTTTATACAATAGAGACCTTCAAATAACATAGGTTAGTGTTTTAAGCCAATTCCTAG
CAACTTAATAACAATTAAACGAGTCTCCATACATGCCAAAGACTTAAAATACTTTAAAACCTTTA
TGTATCGATCAATAGTTTGATAGTGTGATTTAGCCTCTAGCAACCTCCAACTCGAG
Found at i:60863199 original size:49 final size:48
Alignment explanation
Indices: 60863126--60863369 Score: 238
Period size: 49 Copynumber: 4.9 Consensus size: 48
60863116 AGCCGAAGCT
* * *
60863126 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAC
** *
60863174 AGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTAACCTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAAC
* ** * * *
60863225 ATATAATACATGTAGTAGCCTGCACTTAGTACTACACACGTGATC-AC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAC
* * * * *
60863272 AGTTTTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATT
1 A--TCT-G-GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA-C
* *
60863325 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
60863370 TCACAATAGT
Statistics
Matches: 158, Mismatches: 29, Indels: 17
0.77 0.14 0.08
Matches are distributed among these distances:
47 2 0.01
48 2 0.01
49 75 0.47
50 39 0.25
51 38 0.24
52 1 0.01
53 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (48 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAC
Found at i:60863313 original size:101 final size:98
Alignment explanation
Indices: 60863138--60863369 Score: 268
Period size: 100 Copynumber: 2.3 Consensus size: 98
60863128 CTGGTACGCA
* * *
60863138 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTGGTACACATAGTAGCCTGCACTTA
* * * *
60863203 GTACTACACACGTAACCTCACCATATAATACATG
66 GTACTACACACGCAACC-AACCATACAATACACG
* * *
60863237 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGAGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG-TCT-G-GTACACATAGTAGCCTGCAC
* * ** * **
60863301 TTAGTACTACACATGCGACCAATTATCCGGTACACG
63 TTAGTACTACACACGCAACCAACCATACAATACACG
60863337 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
60863370 TCACAATAGT
Statistics
Matches: 112, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
98 4 0.04
99 32 0.29
100 41 0.37
101 35 0.31
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCAACCAACCATACAATACACG
Found at i:60869347 original size:9 final size:9
Alignment explanation
Indices: 60869333--60869366 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
60869323 GAACTATAAG
*
60869333 TTACATGAT
1 TTACATGAA
60869342 TTACATGAA
1 TTACATGAA
*
60869351 TTATATGAA
1 TTACATGAA
60869360 TTACATG
1 TTACATG
60869367 GATATTATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (9 bp):
TTACATGAA
Found at i:60874174 original size:27 final size:27
Alignment explanation
Indices: 60874089--60874182 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 27
60874079 TAACTGATTC
*
60874089 CGCACACTTAGTGCTCAGAAAT-TAATT
1 CGCACACTTAGTGCTCAG-AATCAAATT
* * * * *
60874116 CACACACATAGTGCTTA-AATCCAACT
1 CGCACACTTAGTGCTCAGAATCAAATT
*
60874142 CGCACACTTAGTGCTCAGTATCAAATT
1 CGCACACTTAGTGCTCAGAATCAAATT
60874169 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60874183 ATCCCTCAAA
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
25 3 0.06
26 17 0.31
27 34 0.63
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTCAGAATCAAATT
Found at i:60874385 original size:32 final size:32
Alignment explanation
Indices: 60874326--60874444 Score: 98
Period size: 32 Copynumber: 3.7 Consensus size: 32
60874316 CTCAATCGGC
* * * * *
60874326 TATATCAAACTACACCTAGATACACATTTGGT
1 TATATCCAACTACACATATATAGACATTTAGT
* *
60874358 TATATCCAA-TCACACATATATAGACATTCAACT
1 TATATCCAACT-ACACATATATAGACATT-TAGT
*
60874391 T-TATCCAACTACACATATATAGACACTTAGT
1 TATATCCAACTACACATATATAGACATTTAGT
* * *
60874422 TATGTCAAACATATACATATATA
1 TATATCCAAC-TACACATATATA
60874445 TATATATATA
Statistics
Matches: 69, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
31 4 0.06
32 51 0.74
33 14 0.20
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32
Consensus pattern (32 bp):
TATATCCAACTACACATATATAGACATTTAGT
Found at i:60874445 original size:2 final size:2
Alignment explanation
Indices: 60874432--60874461 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
60874422 TATGTCAAAC
*
60874432 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60874462 CAGATTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:60879204 original size:54 final size:53
Alignment explanation
Indices: 60879146--60879355 Score: 181
Period size: 54 Copynumber: 3.9 Consensus size: 53
60879136 CACTACAAGG
* * * * *
60879146 GTATTTCGATAGTTTTACAAATCGGGGGTATTTCGATAATTTTA-TAATCTCTGA
1 GTATTTCGGTAATTTTAC-AATCAGGGGTATTTCGATAATTTTACAAAT-TCGGA
* * * * *
60879200 GTATTTCGGTAATTTTACACTACAAGGGTATTTCGATAGTTTTACAAATTGGGG
1 GTATTTCGGTAATTTTACAAT-CAGGGGTATTTCGATAATTTTACAAATTCGGA
* * *
60879254 GTATTTTGGTAATTTTACAATCTAGGGGTATTTCGATAATTTTACAAATTGGGG
1 GTATTTCGGTAATTTTACAATC-AGGGGTATTTCGATAATTTTACAAATTCGGA
** * * * * *
60879308 GTATTTATGTAATCTTACGAA-CCGGGGTATTTTGATAATCTTAAAAAT
1 GTATTTCGGTAATTTTAC-AATCAGGGGTATTTCGATAATTTTACAAAT
60879356 CGGGGTCTCA
Statistics
Matches: 131, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
53 25 0.19
54 101 0.77
55 5 0.04
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (53 bp):
GTATTTCGGTAATTTTACAATCAGGGGTATTTCGATAATTTTACAAATTCGGA
Found at i:60879213 original size:81 final size:81
Alignment explanation
Indices: 60879115--60879299 Score: 291
Period size: 81 Copynumber: 2.3 Consensus size: 81
60879105 TTTTACCTTA
60879115 TAGG-GTATTTCGGTAATTTTACACTACAAGGGTATTTCGATAGTTTTACAAATCGGGGGTATTT
1 TAGGAGTATTTCGGTAATTTTACACTACAAGGGTATTTCGATAGTTTTACAAATCGGGGGTATTT
*
60879179 CGATAATTTTATAATC
66 CGATAATTTTACAATC
** *
60879195 TCTGAGTATTTCGGTAATTTTACACTACAAGGGTATTTCGATAGTTTTACAAATTGGGGGTATTT
1 TAGGAGTATTTCGGTAATTTTACACTACAAGGGTATTTCGATAGTTTTACAAATCGGGGGTATTT
* *
60879260 TGGTAATTTTACAATC
66 CGATAATTTTACAATC
* *
60879276 TAGGGGTATTTCGATAATTTTACA
1 TAGGAGTATTTCGGTAATTTTACA
60879300 AATTGGGGGT
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
80 2 0.02
81 92 0.98
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (81 bp):
TAGGAGTATTTCGGTAATTTTACACTACAAGGGTATTTCGATAGTTTTACAAATCGGGGGTATTT
CGATAATTTTACAATC
Found at i:60879300 original size:27 final size:27
Alignment explanation
Indices: 60879117--60879313 Score: 161
Period size: 27 Copynumber: 7.3 Consensus size: 27
60879107 TTACCTTATA
* * *
60879117 GGGTATTTCGGTAATTTTACACTAC-AA
1 GGGTATTTCGATAATTTTACAAT-CTAG
* *
60879144 GGGTATTTCGATAGTTTTACAAATC-GG
1 GGGTATTTCGATAATTTTAC-AATCTAG
* **
60879171 GGGTATTTCGATAATTTTATAATCTCT
1 GGGTATTTCGATAATTTTACAATCTAG
* * * *
60879198 GAGTATTTCGGTAATTTTACACTAC-AA
1 GGGTATTTCGATAATTTTACAAT-CTAG
* *
60879225 GGGTATTTCGATAGTTTTACAAAT-TGG
1 GGGTATTTCGATAATTTTAC-AATCTAG
* *
60879252 GGGTATTTTGGTAATTTTACAATCTAG
1 GGGTATTTCGATAATTTTACAATCTAG
*
60879279 GGGTATTTCGATAATTTTACAAAT-TGG
1 GGGTATTTCGATAATTTTAC-AATCTAG
60879306 GGGTATTT
1 GGGTATTT
60879314 ATGTAATCTT
Statistics
Matches: 135, Mismatches: 28, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
26 7 0.05
27 120 0.89
28 8 0.06
ACGTcount: A:0.27, C:0.10, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAATCTAG
Found at i:60879320 original size:27 final size:26
Alignment explanation
Indices: 60879225--60879360 Score: 105
Period size: 27 Copynumber: 5.1 Consensus size: 26
60879215 TACACTACAA
* *
60879225 GGGTATTTCGATAGTTTTACAAATTGG
1 GGGTATTTTG-TAATTTTACAAATTGG
*
60879252 GGGTATTTTGGTAATTTTAC-AATCTAG
1 GGGTATTTT-GTAATTTTACAAAT-TGG
*
60879279 GGGTATTTCGATAATTTTACAAATTGG
1 GGGTATTTTG-TAATTTTACAAATTGG
* * **
60879306 GGGTATTTATGTAATCTTACGAA-CCG
1 GGGTATTT-TGTAATTTTACAAATTGG
* * *
60879332 GGGTATTTTGATAATCTTAAAAATCGG
1 GGGTATTTTG-TAATTTTACAAATTGG
60879359 GG
1 GG
60879361 TCTCAGTGAC
Statistics
Matches: 89, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
25 2 0.02
26 23 0.26
27 59 0.66
28 5 0.06
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGTAATTTTACAAATTGG
Found at i:60882291 original size:13 final size:13
Alignment explanation
Indices: 60882270--60882308 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
60882260 GTTCGGCAGG
60882270 GACACGCCCGTGT
1 GACACGCCCGTGT
*
60882283 GACATGCCCGTGT
1 GACACGCCCGTGT
60882296 GACACG-CCGTGT
1 GACACGCCCGTGT
60882308 G
1 G
60882309 CGATTACTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 7 0.29
13 17 0.71
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.18
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:60885881 original size:47 final size:47
Alignment explanation
Indices: 60885826--60886207 Score: 593
Period size: 47 Copynumber: 8.0 Consensus size: 47
60885816 TGTAGGAGAT
* *
60885826 GTATATATGTGATATGGTCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
60885873 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
60885920 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA--AG-A
* *
60885970 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT
1 -GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
60886018 GTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* * *
60886067 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGT
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
60886114 GTATATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
60886163 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
60886208 CATATGTGTG
Statistics
Matches: 310, Mismatches: 17, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
47 175 0.56
49 92 0.30
50 1 0.00
51 42 0.14
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:60886100 original size:96 final size:96
Alignment explanation
Indices: 60885827--60886207 Score: 613
Period size: 96 Copynumber: 3.9 Consensus size: 96
60885817 GTAGGAGATG
* *
60885827 TATATATGTGATATGGTCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
*
60885892 TAATGGCCAATGTGATGAATGTGAAAGAG--
66 TAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
60885921 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATATGTGATAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA--AG-A-GTATATATGTGATAA
60885986 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
62 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
60886021 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
* *
60886086 TAATGGCCGATGTGATGAATGTGAAGGTGTA
66 TAATGGCCAATGTGATGAATGTGAAAGTGTA
*
60886117 TATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
*
60886182 TAATGGCCGATGTGATGAATGTGAAA
66 TAATGGCCAATGTGATGAATGTGAAA
60886208 CATATGTGTG
Statistics
Matches: 266, Mismatches: 15, Indels: 10
0.91 0.05 0.03
Matches are distributed among these distances:
94 40 0.15
96 136 0.51
97 2 0.01
98 47 0.18
100 41 0.15
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
TAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:60886223 original size:147 final size:144
Alignment explanation
Indices: 60885827--60886207 Score: 683
Period size: 145 Copynumber: 2.6 Consensus size: 144
60885817 GTAGGAGATG
* *
60885827 TATATATGTGATATGGTCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
60885892 TAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
60885957 ATGTGAAGGTGTATA
131 ATGTGAAGGTG-ATA
*
60885972 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT--ATGTGATAAGG
60886037 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
64 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
60886102 GAATGTGAAGGTG-TA
129 GAATGTGAAGGTGATA
*
60886117 TATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
*
60886182 TAATGGCCGATGTGATGAATGTGAAA
66 TAATGGCCAATGTGATGAATGTGAAA
60886208 CATATGTGTG
Statistics
Matches: 228, Mismatches: 6, Indels: 6
0.95 0.03 0.03
Matches are distributed among these distances:
143 38 0.17
145 101 0.44
147 89 0.39
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (144 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
TAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAGGTGATA
Done.