Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 206 of 378
Found at i:60886253 original size:48 final size:48
Alignment explanation
Indices: 60886199--60886398 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
60886189 CGATGTGATG
*
60886199 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
60886247 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
60886295 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
60886343 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
60886391 AATGTGAA
1 AATGTGAA
60886399 TGTTGTAACA
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:60886492 original size:37 final size:37
Alignment explanation
Indices: 60886438--60886528 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
60886428 AACTTGGAAA
* *
60886438 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGTGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
60886476 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
60886513 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
60886529 TTCGTAATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 47 0.92
38 4 0.08
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:60896790 original size:32 final size:32
Alignment explanation
Indices: 60896754--60896826 Score: 83
Period size: 32 Copynumber: 2.3 Consensus size: 32
60896744 ATGCGGCTCT
* *
60896754 AAGCCTTCAGTAGCAGTATTATAATTGCCACA
1 AAGCCATCAGTAACAGTATTATAATTGCCACA
* * * *
60896786 AAGCCATCGGTAACTGTATTATATTTGGCACA
1 AAGCCATCAGTAACAGTATTATAATTGCCACA
*
60896818 TAGCCATCA
1 AAGCCATCA
60896827 CCGACGGTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTATTATAATTGCCACA
Found at i:60896989 original size:22 final size:22
Alignment explanation
Indices: 60896923--60896990 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
60896913 GTAAATACAT
* *
60896923 TTGGCACAAAGCCATAGTCAAGA
1 TTGGCACAGAGCCATAATC-AGA
** *
60896946 -TGGCACAGAGCCATTTTTAGA
1 TTGGCACAGAGCCATAATCAGA
60896967 TTGGCACAGAGCCATAATCAGA
1 TTGGCACAGAGCCATAATCAGA
60896989 TT
1 TT
60896991 ACGCGGCTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
21 3 0.08
22 34 0.92
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.24
Consensus pattern (22 bp):
TTGGCACAGAGCCATAATCAGA
Found at i:60897413 original size:54 final size:54
Alignment explanation
Indices: 60897355--60897486 Score: 203
Period size: 54 Copynumber: 2.4 Consensus size: 54
60897345 TTACCCTACT
* * *
60897355 AGGGTATTTCGGTAATTTTACAATTTAGGGGTATTTCGGTAATTTTACAAACTG
1 AGGGTATTTCAGTAATTTTACAATGTAGGGGTATTTCGATAATTTTACAAACTG
* *
60897409 AGGGTATTTCAGTAATTTTACAAAGTGGGGGTATTTCGATAATTTTACAAACTG
1 AGGGTATTTCAGTAATTTTACAATGTAGGGGTATTTCGATAATTTTACAAACTG
60897463 -GGAGTATTTCAGTAATTTTACAAT
1 AGG-GTATTTCAGTAATTTTACAAT
60897487 CCAGGGTCTT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
53 2 0.03
54 69 0.97
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAATGTAGGGGTATTTCGATAATTTTACAAACTG
Found at i:60897484 original size:27 final size:26
Alignment explanation
Indices: 60897356--60897485 Score: 163
Period size: 27 Copynumber: 4.8 Consensus size: 26
60897346 TACCCTACTA
* **
60897356 GGGTATTTCGGTAATTTTACAATTTAG
1 GGGTATTTCAGTAATTTTACAAACT-G
*
60897383 GGGTATTTCGGTAATTTTACAAACTG
1 GGGTATTTCAGTAATTTTACAAACTG
*
60897409 AGGGTATTTCAGTAATTTTACAAAGTGG
1 -GGGTATTTCAGTAATTTTACAAACT-G
60897437 GGGTATTTC-GATAATTTTACAAACTG
1 GGGTATTTCAG-TAATTTTACAAACTG
60897463 GGAGTATTTCAGTAATTTTACAA
1 GG-GTATTTCAGTAATTTTACAA
60897486 TCCAGGGTCT
Statistics
Matches: 93, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
26 5 0.05
27 86 0.92
28 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (26 bp):
GGGTATTTCAGTAATTTTACAAACTG
Found at i:60901616 original size:37 final size:37
Alignment explanation
Indices: 60901574--60901648 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
60901564 CATATGGCTA
60901574 AATGGATAACTTCATATATGCACATTCTCATAAACAT
1 AATGGATAACTTCATATATGCACATTCTCATAAACAT
60901611 AATGGATAACTTCATATATGCACATTCTCATAAACAT
1 AATGGATAACTTCATATATGCACATTCTCATAAACAT
60901648 A
1 A
60901649 CTTACTTCAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (37 bp):
AATGGATAACTTCATATATGCACATTCTCATAAACAT
Found at i:60901938 original size:40 final size:40
Alignment explanation
Indices: 60901885--60902033 Score: 214
Period size: 40 Copynumber: 3.7 Consensus size: 40
60901875 ACTACTTGCT
60901885 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
60901925 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
60901965 CAAATGCCTTC-GGAGCTTAGCCCGG-AATTAGTCACT-AGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTA-TAGTAACTCA-CA
60902005 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
60902034 CATCCGAATA
Statistics
Matches: 98, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
39 4 0.04
40 90 0.92
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:60905241 original size:40 final size:40
Alignment explanation
Indices: 60905186--60905395 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
60905176 AACATTGGAA
60905186 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
60905226 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
60905266 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
60905306 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
60905345 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
60905386 CTATATCCGG
1 ATATATCCGG
60905396 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:60913375 original size:40 final size:40
Alignment explanation
Indices: 60913320--60913529 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
60913310 AACATTGGAA
60913320 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
60913360 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
60913400 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
60913440 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
60913479 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
60913520 CTATATCCGG
1 ATATATCCGG
60913530 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:60923912 original size:15 final size:15
Alignment explanation
Indices: 60923889--60923924 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
60923879 CTTGGGTTTC
*
60923889 TTATCCTGGATCTCT
1 TTATTCTGGATCTCT
*
60923904 TTATTCTGGATTTCT
1 TTATTCTGGATCTCT
60923919 TTATTC
1 TTATTC
60923925 CGGGTTTCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.19, G:0.11, T:0.56
Consensus pattern (15 bp):
TTATTCTGGATCTCT
Found at i:60923932 original size:15 final size:15
Alignment explanation
Indices: 60923896--60923963 Score: 59
Period size: 15 Copynumber: 4.6 Consensus size: 15
60923886 TTCTTATCCT
* *
60923896 GGATCTCTTTATTCT
1 GGATTTCTTTATTCC
60923911 GGATTTCTTTATTCC
1 GGATTTCTTTATTCC
* * *
60923926 GGGTTTCTCTA-TCTT
1 GGATTTCTTTATTC-C
60923941 GGATTTCTTTATT-C
1 GGATTTCTTTATTCC
*
60923955 GGTTTTCTT
1 GGATTTCTT
60923964 GTTATCTTTG
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
14 10 0.24
15 31 0.74
16 1 0.02
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (15 bp):
GGATTTCTTTATTCC
Found at i:60928071 original size:15 final size:17
Alignment explanation
Indices: 60928041--60928072 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
60928031 TTGATACTTG
60928041 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
60928058 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
60928073 AAATATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:60931991 original size:26 final size:26
Alignment explanation
Indices: 60931962--60932069 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
60931952 TGGTAAAAAT
60931962 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
60931988 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
60932014 TGATAATGGGTTAGGTAAACT-TTTCA
1 TGATAATGGGTTAGGTAAA-TGTTCCA
*
60932040 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
60932066 TGAT
1 TGAT
60932070 GGCCATTTCA
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
25 1 0.01
26 72 0.97
27 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:60933566 original size:26 final size:26
Alignment explanation
Indices: 60933503--60933578 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
60933493 AAAAGCAACT
* * *
60933503 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-GTGGA
*
60933531 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGGTGGA
*
60933557 AAATTACTGTTATACCCTTAGG
1 AAATTACTGTTATACCCCTAGG
60933579 GTTAATTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 24 0.56
27 1 0.02
28 18 0.42
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGGTGGA
Found at i:60933722 original size:27 final size:26
Alignment explanation
Indices: 60933682--60933822 Score: 176
Period size: 27 Copynumber: 5.2 Consensus size: 26
60933672 AGGAAGCGTC
*
60933682 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
60933709 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
60933736 CTGGTGGCTATGCCACGATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
60933763 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
*
60933790 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
60933817 CTGGTG
1 CTGGTG
60933823 ACTTCATCAC
Statistics
Matches: 100, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
26 10 0.10
27 87 0.87
28 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:60933764 original size:54 final size:53
Alignment explanation
Indices: 60933682--60933822 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
60933672 AGGAAGCGTC
*
60933682 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
*
60933736 CTGGTGGCTATGCCACGATTATTTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
* *
60933790 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
60933823 ACTTCATCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.08
54 74 0.93
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
Found at i:60936488 original size:29 final size:29
Alignment explanation
Indices: 60936446--60936509 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
60936436 GCATGTATAG
60936446 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
*
60936475 GAATGTGATTTGGGCCTAGTGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
*
60936504 GCATGT
1 GAATGT
60936510 TTGTAGACTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.22, C:0.14, G:0.33, T:0.31
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAT
Found at i:60941296 original size:92 final size:93
Alignment explanation
Indices: 60941137--60941307 Score: 231
Period size: 92 Copynumber: 1.8 Consensus size: 93
60941127 GGATGGTTGA
** * *
60941137 GCATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGTGT
1 GCATCCAAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGTCCGAACTCATTGAGT
60941202 TGAG-CCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
60941229 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGTGAAA-G-CCTGAGCTCATTGA
1 GCATCCAAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATG-CAAATGTCC-GAACTCATTGA
60941292 GTTGAGTCCGAGTTCG
64 GTTGAGTCCGAGTTCG
60941308 CTTAGGGGCG
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
91 2 0.03
92 54 0.79
93 12 0.18
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60944280 original size:15 final size:15
Alignment explanation
Indices: 60944241--60944320 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
60944231 GTATCTTGGG
*
60944241 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
60944256 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
60944271 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
60944286 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
60944301 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
60944315 TTTCTT
1 TTTCTT
60944321 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:60944310 original size:30 final size:30
Alignment explanation
Indices: 60944232--60944319 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
60944222 CATAGTATCG
* * *
60944232 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
60944262 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
60944292 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
60944320 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:60946805 original size:47 final size:45
Alignment explanation
Indices: 60946684--60946853 Score: 179
Period size: 44 Copynumber: 3.7 Consensus size: 45
60946674 GGATGGTTGA
*
60946684 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGATGATGCAAT
*
60946730 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGA-GATGTAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGATGATGCAA-T
* * *
60946773 AGGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGAT-GATGC-AAT
* *
60946823 GC--CTGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
60946854 CTTAGGGGCA
Statistics
Matches: 106, Mismatches: 9, Indels: 18
0.80 0.07 0.14
Matches are distributed among these distances:
42 6 0.06
43 3 0.03
44 30 0.28
45 1 0.01
46 27 0.25
47 29 0.27
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGATGATGCAAT
Found at i:60948967 original size:50 final size:50
Alignment explanation
Indices: 60948867--60948967 Score: 130
Period size: 50 Copynumber: 2.0 Consensus size: 50
60948857 ATCGTATTTG
** ** * *
60948867 ATAAGTGTGTGATTAATTGTTGAGTGACATCGTTTGTAGGGTCATGGCTA
1 ATAAGTGTGTGATTAATCATTGAACGACATCATTTGTAGGGTCATAGCTA
* *
60948917 ATAATTGTGTGATTAATCATTGAACGACATCATTTGTAGGGTCGTAGCTA
1 ATAAGTGTGTGATTAATCATTGAACGACATCATTTGTAGGGTCATAGCTA
60948967 A
1 A
60948968 GGAGATCGCG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.37
Consensus pattern (50 bp):
ATAAGTGTGTGATTAATCATTGAACGACATCATTTGTAGGGTCATAGCTA
Found at i:60956548 original size:39 final size:39
Alignment explanation
Indices: 60956421--60956604 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 39
60956411 ACGACTCGCT
** *
60956421 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGCAACTTGCA
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCA
* * * *
60956461 CGAATGCCTTCGGGATTTAACCCGGGTTTAGTAACTTGCA
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* *
60956501 CAAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCA
1 CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * * * *
60956539 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCA
60956580 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
60956605 CATCATTCGA
Statistics
Matches: 116, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
38 24 0.21
39 20 0.17
40 61 0.53
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (39 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
Found at i:60963766 original size:49 final size:49
Alignment explanation
Indices: 60963707--60963887 Score: 186
Period size: 49 Copynumber: 3.7 Consensus size: 49
60963697 CTGGTACGCA
* * *
60963707 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATTCGGTACACG
* * ** * * *
60963756 TAGTATCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATTCGGTACACG
* * * *
60963806 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTT-TTC-GTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAATTATTCGGTACACG
*
60963855 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
60963888 TCACAATAGA
Statistics
Matches: 108, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 61 0.56
50 42 0.39
51 2 0.02
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATTCGGTACACG
Found at i:60963888 original size:99 final size:99
Alignment explanation
Indices: 60963707--60963888 Score: 242
Period size: 99 Copynumber: 1.8 Consensus size: 99
60963697 CTGGTACGCA
* * *
60963707 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTATCCTGCACTTA
1 TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
60963772 GTACTACACACGTGACCTAACCATTTGATACATG
66 GTACTACACACGCGACCTAACCATTTGATACATG
* * * * *
60963806 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTT-TTC-GTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACATAGTACTACACACGCGA-C-CAATTATCCGGTACACATAGTAGCCTGCACT
*
60963869 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
60963889 CACAATAGAT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
99 64 0.90
100 3 0.04
101 4 0.06
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATTTGATACATG
Found at i:60965565 original size:15 final size:15
Alignment explanation
Indices: 60965519--60965573 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
60965509 CAAGAAAACT
60965519 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
60965534 -AGATAGA-AAACCCA
1 GA-ATAAAGAAATCCA
60965548 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
60965563 GAATAAAGAAA
1 GAATAAAGAAA
60965574 CCCAAGATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 11 0.33
15 22 0.67
ACGTcount: A:0.62, C:0.13, G:0.15, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:60968634 original size:49 final size:49
Alignment explanation
Indices: 60968568--60968805 Score: 269
Period size: 49 Copynumber: 4.8 Consensus size: 49
60968558 TAGCCAAATC
* * * * * *
60968568 TATCTGGTACGCATAGTAGTCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
60968617 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
60968666 TATCTGGTACACGTAGTATCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * ** * *
60968716 CATCTGATTTACGTAGTAGCCTACACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * ***
60968767 TTTCGGGTACGTATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
60968806 TGCGACCTTA
Statistics
Matches: 158, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
49 86 0.54
50 40 0.25
51 31 0.20
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:60977981 original size:29 final size:29
Alignment explanation
Indices: 60977947--60978019 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
60977937 TACTCAATCA
* *
60977947 CGCACACTTAGTGCCATAT-GATTCAAGCC
1 CGCACACTTAGTGCCATATAG-TCCAAACC
* *
60977976 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATAGTCCAAACC
60978005 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
60978020 GTCTCGCACA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 37 0.97
30 1 0.03
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAGTCCAAACC
Found at i:60980834 original size:27 final size:27
Alignment explanation
Indices: 60980810--60981014 Score: 209
Period size: 27 Copynumber: 7.6 Consensus size: 27
60980800 TTAGTTTACC
60980810 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
60980837 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
*
60980864 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
*
60980891 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* * * * *
60980918 AAATTATCAAAATAACACTGG-TTGTG
1 AAATTACCAAAATACCCCTGGTTTATA
* *** *
60980944 AAATTACCGAAATA-CCCTCAAATTGTA
1 AAATTACCAAAATACCCCT-GGTTTATA
** *
60980971 AAATTACCAAAATACCCCTAATTTACA
1 AAATTACCAAAATACCCCTGGTTTATA
60980998 AAATTA-CAGAAATACCC
1 AAATTACCA-AAATACCC
60981015 TTAACTTTCT
Statistics
Matches: 153, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
25 3 0.02
26 18 0.12
27 128 0.84
28 4 0.03
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTATA
Found at i:60980875 original size:54 final size:54
Alignment explanation
Indices: 60980810--60981089 Score: 242
Period size: 54 Copynumber: 5.2 Consensus size: 54
60980800 TTAGTTTACC
* * *
60980810 AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTAGTTTGTA
* * *
60980864 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTAGTTTGTA
* * * * * * * **
60980918 AAATTATCAAAATAACACTGG-TTGTGAAATTACCGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTAGTTTGTA
** * * *
60980971 AAATTACCAAAATACCCCTAATTTACAAAATTA-CAGAAATACCCTTAACTTTCTAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCA-AAATACCCTT-AGTTTGT-A
* ** * * ** *
60981027 AAATTA-TAGAAATACCATTGGTTTACAAAATTACTAAAATGTCCTTAATTTGTA
1 AAATTACCA-AAATACCCCTGGTTTATAAAATTACCAAAATACCCTTAGTTTGTA
*
60981081 GAATTACCA
1 AAATTACCA
60981090 TTTTACCCTC
Statistics
Matches: 179, Mismatches: 40, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
53 42 0.23
54 90 0.50
55 11 0.06
56 35 0.20
57 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTAGTTTGTA
Found at i:60980949 original size:26 final size:27
Alignment explanation
Indices: 60980810--60980989 Score: 220
Period size: 27 Copynumber: 6.7 Consensus size: 27
60980800 TTAGTTTACC
*
60980810 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
60980837 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
60980864 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
60980891 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
60980918 AAATTATCAAAATAACACTGG-TTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* ***
60980944 AAATTACCGAAATA-CCCTCAAATTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
60980971 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
60980990 AATTTACAAA
Statistics
Matches: 132, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
25 3 0.02
26 16 0.12
27 109 0.83
28 4 0.03
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:60980987 original size:80 final size:80
Alignment explanation
Indices: 60980810--60981012 Score: 225
Period size: 80 Copynumber: 2.5 Consensus size: 80
60980800 TTAGTTTACC
* *
60980810 AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACAC-TTGGTTATAAAATTACCAAA
***
60980875 ATACCCCTGGTTTGTA
65 ATACCCCTAAATTGTA
* * * *
60980891 AAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCAAAATAACAC-TGGTTGTGAAATTACCGA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACT-AAAAT-ACACTTGGTTATAAAATTACCAA
60980954 AATA-CCCTCAAATTGTA
64 AATACCCCT-AAATTGTA
** *
60980971 AAATTACCAAAATACCCCTAATTTACAAAATTAC-AGAAATAC
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACTA-AAATAC
60981013 CCTTAACTTT
Statistics
Matches: 104, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
79 7 0.07
80 57 0.55
81 37 0.36
82 3 0.03
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.30
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACACTTGGTTATAAAATTACCAAAA
TACCCCTAAATTGTA
Found at i:60981104 original size:27 final size:27
Alignment explanation
Indices: 60981074--60981234 Score: 214
Period size: 27 Copynumber: 6.0 Consensus size: 27
60981064 AATGTCCTTA
*
60981074 ATTTGTAGAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
** *
60981101 ATTTATAGAATTACTGTTTCACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* * *
60981128 ATTTATAAAATTACTATTCTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
60981155 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* *
60981182 ATTTATAGAATTACCGTTTTACCCTTG
1 ATTTATAGAATTACCATTTTACCCTCG
* * *
60981209 ATTTACAAAATTACCATTTTTCCCTC
1 ATTTATAGAATTACCATTTTACCCTC
60981235 AGTTTACAAA
Statistics
Matches: 116, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.42
Consensus pattern (27 bp):
ATTTATAGAATTACCATTTTACCCTCG
Found at i:60981164 original size:81 final size:81
Alignment explanation
Indices: 60981074--60981222 Score: 253
Period size: 81 Copynumber: 1.8 Consensus size: 81
60981064 AATGTCCTTA
* * *
60981074 ATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTCACCCTCGATTTATAAAAT
1 ATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAAT
60981139 TACTATTCTACCCTCG
66 TACTATTCTACCCTCG
* *
60981155 ATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAAAAT
1 ATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAAT
60981220 TAC
66 TAC
60981223 CATTTTTCCC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
ATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAAT
TACTATTCTACCCTCG
Found at i:60981255 original size:54 final size:54
Alignment explanation
Indices: 60981090--60981265 Score: 192
Period size: 54 Copynumber: 3.3 Consensus size: 54
60981080 AGAATTACCA
* * ** * *
60981090 TTTTACCCTCGATTTATAGAATTACTGTTTCACCCTCGATTTATAAAATTACTA
1 TTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTG
* * * * *
60981144 TTCTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCG
1 TTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTG
* * *
60981198 TTTTACCCTTGATTTACAAAATTACCATTTTTCCCTC-AGTTTACAAAATTACTG
1 TTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGA-TTTATAAAATTACTG
* *
60981252 TTTTATCGTCGATT
1 TTTTACCCTCGATT
60981266 GTGAAATTAT
Statistics
Matches: 103, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
53 1 0.01
54 102 0.99
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.43
Consensus pattern (54 bp):
TTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTG
Found at i:60981265 original size:81 final size:81
Alignment explanation
Indices: 60981082--60981249 Score: 239
Period size: 81 Copynumber: 2.1 Consensus size: 81
60981072 TAATTTGTAG
* * *
60981082 AATTACCATTTTACCCTCGATTTATAGAATTACTGTTTCACCCTCGATTTATAAAATTACTATTC
1 AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTC
* *
60981147 TACCCTCGATTTATAG
66 TACCCTCGATTTACAA
* * *
60981163 AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAAAATTACCATTT
1 AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTC
*
60981228 TTCCCTC-AGTTTACAA
66 TACCCTCGA-TTTACAA
60981244 AATTAC
1 AATTAC
60981250 TGTTTTATCG
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 76 0.99
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (81 bp):
AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTC
TACCCTCGATTTACAA
Found at i:60981308 original size:27 final size:27
Alignment explanation
Indices: 60981277--60981734 Score: 562
Period size: 27 Copynumber: 17.0 Consensus size: 27
60981267 TGAAATTATT
* * *
60981277 GAAATACCCCTATAAGATAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* ** *
60981304 AAAATACCCCTAGT-TTGTAAAATTACC
1 GAAATACCCCT-GTAGGGTAGAATTACC
* **
60981331 GAAATACCCCTATAGCATAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60981358 GGAATACCCCT-TAAGGGTAGAATTATC
1 GAAATACCCCTGT-AGGGTAGAATTACC
*
60981385 GGAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60981412 GGAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60981439 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60981466 GCAATACCCCTGTAGGATAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60981493 GAAATATCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* **
60981520 GAAATACCCCTATAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60981547 GCAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
60981574 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60981601 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60981628 GCAATACCCCTGTAGGGTACAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60981655 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60981682 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
60981709 GAGATA-CCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
60981735 ATTTTACCCC
Statistics
Matches: 375, Mismatches: 52, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
26 19 0.05
27 354 0.94
28 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:60982213 original size:22 final size:22
Alignment explanation
Indices: 60982161--60982221 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
60982151 TTAAAGCCTT
* *
60982161 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
60982183 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
60982205 CTGATTATGGCTGTGTG
1 CTGATTATGGCTCTGTG
60982222 GCAAACGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 30 0.94
23 1 0.03
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:60982414 original size:27 final size:27
Alignment explanation
Indices: 60982384--60982485 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
60982374 ATTCTGTTAA
* *
60982384 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
60982411 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
60982438 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
60982465 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
60982486 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:60982660 original size:6 final size:6
Alignment explanation
Indices: 60982622--60982702 Score: 51
Period size: 6 Copynumber: 13.0 Consensus size: 6
60982612 TTCCATTCAC
* * *
60982622 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG AATT-TG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG -ATTCTG
*
60982672 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
60982703 TCACCTAATT
Statistics
Matches: 59, Mismatches: 7, Indels: 18
0.70 0.08 0.21
Matches are distributed among these distances:
4 2 0.03
5 2 0.03
6 40 0.68
7 13 0.22
8 2 0.03
ACGTcount: A:0.20, C:0.15, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:60982674 original size:31 final size:31
Alignment explanation
Indices: 60982622--60982757 Score: 142
Period size: 31 Copynumber: 4.5 Consensus size: 31
60982612 TTCCATTCAC
60982622 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
60982654 ATTCTGATTTTGAATT-TGTTACCTGATACTG
1 ATTCTGATTTTG-ATTCTGTTACCTGATACTG
* *
60982685 ATTCTGATTCTGATTCTGTCACCT-A-A-T-
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
60982712 -TT-TGATTTTGATTCTGTCACCTAATTCTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
60982741 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
60982758 AGTTCTGATA
Statistics
Matches: 91, Mismatches: 5, Indels: 17
0.81 0.04 0.15
Matches are distributed among these distances:
25 19 0.21
26 3 0.03
28 2 0.02
29 1 0.01
30 6 0.07
31 50 0.55
32 10 0.11
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:60982723 original size:25 final size:25
Alignment explanation
Indices: 60982685--60982752 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
60982675 CCTGATACTG
60982685 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
* *
60982710 ATTTTGATTTTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
60982735 ATTCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
60982753 ATTCTAGTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:60984761 original size:27 final size:27
Alignment explanation
Indices: 60984737--60984941 Score: 218
Period size: 27 Copynumber: 7.6 Consensus size: 27
60984727 TTAGTTTACC
60984737 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
60984764 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
*
60984791 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
*
60984818 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* * * * *
60984845 AAATTATCAAAATAACACTGG-TTGTG
1 AAATTACCAAAATACCCCTGGTTTATA
*** *
60984871 AAATTACCAAAATA-CCCTCAAATTGTA
1 AAATTACCAAAATACCCCT-GGTTTATA
** *
60984898 AAATTACCAAAATACCCCTAATTTACA
1 AAATTACCAAAATACCCCTGGTTTATA
60984925 AAATTA-CAGAAATACCC
1 AAATTACCA-AAATACCC
60984942 TTAACTTTCT
Statistics
Matches: 155, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
25 3 0.02
26 19 0.12
27 129 0.83
28 4 0.03
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTATA
Found at i:60984802 original size:54 final size:54
Alignment explanation
Indices: 60984737--60985016 Score: 244
Period size: 54 Copynumber: 5.2 Consensus size: 54
60984727 TTAGTTTACC
* * *
60984737 AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTAGTTTGTA
* * *
60984791 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTAGTTTGTA
* * * * * * **
60984845 AAATTATCAAAATAACACTGG-TTGTGAAATTACCAAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTAGTTTGTA
** * * *
60984898 AAATTACCAAAATACCCCTAATTTACAAAATTA-CAGAAATACCCTTAACTTTCTAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCA-AAATACCCTT-AGTTTGT-A
* ** * * * *
60984954 AAATTA-TAGAAATACCATTGGTTTACAAAATTACTAAAATGCCC-TCGATTTGTA
1 AAATTACCA-AAATACCCCTGGTTTATAAAATTACCAAAATACCCTTAG-TTTGTA
*
60985008 GAATTACCA
1 AAATTACCA
60985017 TTTTACCCTC
Statistics
Matches: 180, Mismatches: 38, Indels: 15
0.77 0.16 0.06
Matches are distributed among these distances:
53 44 0.24
54 90 0.50
55 11 0.06
56 34 0.19
57 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTAGTTTGTA
Found at i:60984876 original size:26 final size:27
Alignment explanation
Indices: 60984737--60984916 Score: 229
Period size: 27 Copynumber: 6.7 Consensus size: 27
60984727 TTAGTTTACC
*
60984737 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
60984764 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
60984791 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
60984818 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
60984845 AAATTATCAAAATAACACTGG-TTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
***
60984871 AAATTACCAAAATA-CCCTCAAATTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
60984898 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
60984917 AATTTACAAA
Statistics
Matches: 134, Mismatches: 16, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
25 3 0.02
26 17 0.13
27 110 0.82
28 4 0.03
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:60984913 original size:80 final size:80
Alignment explanation
Indices: 60984737--60984939 Score: 234
Period size: 80 Copynumber: 2.5 Consensus size: 80
60984727 TTAGTTTACC
* *
60984737 AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACAC-TTGGTTATAAAATTACCAAA
***
60984802 ATACCCCTGGTTTGTA
65 ATACCCCTAAATTGTA
* * *
60984818 AAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCAAAATAACAC-TGGTTGTGAAATTACCAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACT-AAAAT-ACACTTGGTTATAAAATTACCAA
60984881 AATA-CCCTCAAATTGTA
64 AATACCCCT-AAATTGTA
** *
60984898 AAATTACCAAAATACCCCTAATTTACAAAATTAC-AGAAATAC
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACTA-AAATAC
60984940 CCTTAACTTT
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
79 7 0.07
80 58 0.55
81 37 0.35
82 3 0.03
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACACTTGGTTATAAAATTACCAAAA
TACCCCTAAATTGTA
Found at i:60985128 original size:27 final size:27
Alignment explanation
Indices: 60984995--60985192 Score: 254
Period size: 27 Copynumber: 7.3 Consensus size: 27
60984985 TACTAAAATG
* *
60984995 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * *
60985022 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAAAATTACCATTTTA
*
60985049 CCCTCGATTTATAAAATTACTATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
60985076 CCCTCAATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
60985103 CCCTCGATTTATAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
60985130 CCCTTGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
60985157 CCCTC-AGTTTACAAAATTACAATTTTA
1 CCCTCGA-TTTATAAAATTACCATTTTA
*
60985184 CCGTCGATT
1 CCCTCGATT
60985193 GTGAAATTAC
Statistics
Matches: 150, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 148 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:60985228 original size:27 final size:27
Alignment explanation
Indices: 60985197--60985688 Score: 533
Period size: 27 Copynumber: 18.3 Consensus size: 27
60985187 TCGATTGTGA
* * *
60985197 AATTACTGAAATACCCCTGTAAGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** ** *
60985224 AATTACAAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
60985251 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
** * **
60985278 AATTACTAAAATACCCCTATAGCATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
60985305 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
60985332 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
60985359 AATTACC-AGAATACCCCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
60985386 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
60985413 AATTATCGCAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
60985440 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
60985467 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
60985494 AATTATTGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
60985521 AATTACCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
60985548 AATTACTAAAATACCCCTGTACGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
60985575 AATTATCGCAATACCCCTGTAGGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAG
*
60985602 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
60985629 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
60985656 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
60985682 AATTACC
1 AATTACC
60985689 ATTTTACCCC
Statistics
Matches: 396, Mismatches: 65, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
26 17 0.04
27 376 0.95
28 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:60986167 original size:22 final size:22
Alignment explanation
Indices: 60986115--60986175 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
60986105 TTAAAGCCTT
* *
60986115 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
60986137 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
60986159 CTGATTATGGCTGTGTG
1 CTGATTATGGCTCTGTG
60986176 GCAAACGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 30 0.94
23 1 0.03
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:60986368 original size:27 final size:27
Alignment explanation
Indices: 60986338--60986436 Score: 119
Period size: 27 Copynumber: 3.7 Consensus size: 27
60986328 ATTCTGTTAA
* *
60986338 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
60986365 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
60986392 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
60986419 GTGACTCTGTCACAATAT
1 GTGGCTATGCCACAATAT
60986437 TTGATAACTG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 49 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:60986621 original size:31 final size:31
Alignment explanation
Indices: 60986583--60986675 Score: 114
Period size: 31 Copynumber: 3.0 Consensus size: 31
60986573 CACATTCTGA
60986583 TTTTTGATTCTGTTACCTGATACTGATTTTG
1 TTTTTGATTCTGTTACCTGATACTGATTTTG
* *
60986614 TTTTTGATTTTGTTACCTGATACTGATTCTG
1 TTTTTGATTCTGTTACCTGATACTGATTTTG
* * * * * *
60986645 ATTCTAATTCTGTCACCTAATTCTGATTTTG
1 TTTTTGATTCTGTTACCTGATACTGATTTTG
60986676 ATTCTGTCAC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 52 1.00
ACGTcount: A:0.18, C:0.15, G:0.14, T:0.53
Consensus pattern (31 bp):
TTTTTGATTCTGTTACCTGATACTGATTTTG
Found at i:60986667 original size:25 final size:25
Alignment explanation
Indices: 60986639--60986705 Score: 116
Period size: 25 Copynumber: 2.7 Consensus size: 25
60986629 CCTGATACTG
*
60986639 ATTCTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
60986664 ATTCTGATTTTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
60986689 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
60986706 AGTTCTGATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:60986678 original size:31 final size:31
Alignment explanation
Indices: 60986589--60986712 Score: 89
Period size: 31 Copynumber: 4.2 Consensus size: 31
60986579 CTGATTTTTG
* * * * * *
60986589 ATTCTGTTACCTGATACTGATTTTGTTTTTG
1 ATTCTGTCACCTAATACTGATTCTGATTCTA
* * *
60986620 ATTTTGTTACCTGATACTGATTCTGATTCTA
1 ATTCTGTCACCTAATACTGATTCTGATTCTA
* *
60986651 ATTCTGTCACC---TA---ATTCTGATTTTG
1 ATTCTGTCACCTAATACTGATTCTGATTCTA
*
60986676 ATTCTGTCACCTAATTCTGATTCTGATTCTA
1 ATTCTGTCACCTAATACTGATTCTGATTCTA
*
60986707 GTTCTG
1 ATTCTG
60986713 ATAATGTTTC
Statistics
Matches: 74, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
25 21 0.28
28 3 0.04
31 50 0.68
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGTCACCTAATACTGATTCTGATTCTA
Found at i:60995520 original size:45 final size:45
Alignment explanation
Indices: 60995258--60995517 Score: 394
Period size: 45 Copynumber: 5.8 Consensus size: 45
60995248 TAGGATTCTG
* * * *
60995258 ATATATATGTTTTCATGTAAGACCATGTCTGGGACGTTGGCACCG
1 ATATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCA
*
60995303 ATATATGTGTTTTCGTGTAAGACCATGTCTGGGATGTTGGCATCA
1 ATATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCA
*
60995348 ATATATGTGTTTTCGAGTAAGACCATGTCTGGGACGTTGGCATCA
1 ATATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCA
* *
60995393 ATATATGTGTTTTCGTGTAAGACCACGTCTGGGATGTTGGCATCA
1 ATATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCA
* *
60995438 ATATATGTGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCG
1 ATATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCA
** **
60995483 ATATATGTGAATTCAAGTAAGACCATGTCTGGGAC
1 ATATATGTGTTTTCGTGTAAGACCATGTCTGGGAC
60995518 ATTAACATTA
Statistics
Matches: 197, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 197 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (45 bp):
ATATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCA
Found at i:60995556 original size:41 final size:43
Alignment explanation
Indices: 60995273--60995559 Score: 182
Period size: 45 Copynumber: 6.5 Consensus size: 43
60995263 TATGTTTTCA
* * ** **
60995273 TGTAAGACCATGTCTGGGACGTTGGCACCGATATATGTGTTTTCG
1 TGTAAGACCATGTCTGGGACATT--AACATATATATGTGAATTCG
** ** **
60995318 TGTAAGACCATGTCTGGGATGTTGGCATCAATATATGTGTTTTCG
1 TGTAAGACCATGTCTGGGACATTAACAT--ATATATGTGAATTCG
* * ** **
60995363 AGTAAGACCATGTCTGGGACGTTGGCATCAATATATGTGTTTTCG
1 TGTAAGACCATGTCTGGGACATTAACAT--ATATATGTGAATTCG
* ** ** **
60995408 TGTAAGACCACGTCTGGGATGTTGGCATCAATATATGTGTTTTCG
1 TGTAAGACCATGTCTGGGACATTAACAT--ATATATGTGAATTCG
** *
60995453 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGTGAATTCA
1 TGTAAGACCATGTCTGGGACATTAACAT--ATATATGTGAATTCG
* *
60995498 AGTAAGACCATGTCTGGGACATTAACAT-TATATTTG-ATTCG
1 TGTAAGACCATGTCTGGGACATTAACATATATATGTGAATTCG
* *
60995539 TGTAAGACCCTATCTGGGACA
1 TGTAAGACCATGTCTGGGACA
60995560 GTGGCATCGA
Statistics
Matches: 215, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
41 22 0.10
42 7 0.03
43 1 0.00
45 185 0.86
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTAACATATATATGTGAATTCG
Found at i:60997930 original size:28 final size:28
Alignment explanation
Indices: 60997890--60997988 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
60997880 ATTACATGAC
* *
60997890 TATGAGTGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
60997918 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
60997946 TATGAATGTGATTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
60997974 TATGAATGAGATTGG
1 TATGAATGTGATTGG
60997989 ACCTAAAGGG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:61003107 original size:40 final size:40
Alignment explanation
Indices: 61003048--61003255 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
61003038 CAATTGAATG
* * * *
61003048 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
61003088 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
61003128 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
61003168 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
61003208 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
61003248 ATATCCGG
1 ATATCCGG
61003256 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:61003186 original size:80 final size:80
Alignment explanation
Indices: 61003050--61003255 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
61003040 ATTGAATGAT
* * ** * * *
61003050 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
61003114 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
61003130 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
61003195 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
61003210 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
61003256 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:61008774 original size:28 final size:28
Alignment explanation
Indices: 61008741--61008806 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
61008731 GACTATGAGT
* *
61008741 GTGATTGGGCCTGACGGGCCATATGAAA
1 GTGATTGGGCCCGACAGGCCATATGAAA
* *
61008769 GTGATTGGGCCCGATAGGCCATATGAAT
1 GTGATTGGGCCCGACAGGCCATATGAAA
61008797 GTGATTGGGC
1 GTGATTGGGC
61008807 AATGTGATTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.23, C:0.17, G:0.36, T:0.24
Consensus pattern (28 bp):
GTGATTGGGCCCGACAGGCCATATGAAA
Found at i:61008812 original size:13 final size:13
Alignment explanation
Indices: 61008794--61008819 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
61008784 AGGCCATATG
61008794 AATGTGATTGGGC
1 AATGTGATTGGGC
61008807 AATGTGATTGGGC
1 AATGTGATTGGGC
61008820 CTAAAGGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.38, T:0.31
Consensus pattern (13 bp):
AATGTGATTGGGC
Found at i:61016474 original size:24 final size:24
Alignment explanation
Indices: 61016447--61016561 Score: 212
Period size: 24 Copynumber: 4.8 Consensus size: 24
61016437 CTTATTATGT
**
61016447 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
61016471 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
61016495 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
61016519 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
61016543 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
61016562 TATTTCCAGC
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 89 1.00
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:61018329 original size:28 final size:28
Alignment explanation
Indices: 61018258--61018356 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
61018248 ATAATAAGCC
*
61018258 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCGAACT
* *
61018286 CACACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCGAACT
* * *
61018314 CGCACACTTAGTGCTATACAATTTGAACC
1 CGCACACTTAGTGCTATATAA-TCGAACT
61018343 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61018357 CAATTCATGA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 42 0.69
29 19 0.31
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCGAACT
Found at i:61026184 original size:40 final size:40
Alignment explanation
Indices: 61026076--61026242 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
61026066 TCTTTGGAAT
* * *
61026076 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
61026115 TTA-ACCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
61026154 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
61026194 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCAGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
61026234 TTAGCCCGG
1 TTAGCCCGG
61026243 GTATGATTCA
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 33 0.31
40 71 0.68
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:61035544 original size:15 final size:15
Alignment explanation
Indices: 61035512--61035540 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
61035502 ATTTTCTATG
61035512 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
61035527 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
61035541 ATTTTCATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:61046036 original size:27 final size:27
Alignment explanation
Indices: 61046005--61046063 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
61045995 ACATCTAATA
* *
61046005 CTGATTCT-ATATTGGGCTTAGGCCCAC
1 CTGATTCTGATAATGGGCTAAGG-CCAC
*
61046032 CTGATTCTGTTAATGGGCTAAGGCCAC
1 CTGATTCTGATAATGGGCTAAGGCCAC
61046059 CTGAT
1 CTGAT
61046064 ACTGTTTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 17 0.61
28 11 0.39
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGATTCTGATAATGGGCTAAGGCCAC
Found at i:61046068 original size:27 final size:28
Alignment explanation
Indices: 61046017--61046069 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
61046007 GATTCTATAT
* *
61046017 TGGGCTTAGGCCCACCTGATTCTGTTAA
1 TGGGCTAAGGCCCACCTGATACTGTTAA
61046045 TGGGCTAAGG-CCACCTGATACTGTT
1 TGGGCTAAGGCCCACCTGATACTGTT
61046070 TCTATGATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.19, C:0.25, G:0.26, T:0.30
Consensus pattern (28 bp):
TGGGCTAAGGCCCACCTGATACTGTTAA
Found at i:61047927 original size:42 final size:43
Alignment explanation
Indices: 61047847--61047949 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
61047837 TCCCAGATGT
* * *
61047847 GGTCTTACATGTAATCAAATAACGATGCAACTATCCCAGGCAG
1 GGTCTTACACGAAATCAAATAACGATGCAACTATCCCAGACAG
* * *
61047890 GGTCTTACACGAAATCAAAT-ACGATGCCGA-TGTCCCAGACAT
1 GGTCTTACACGAAATCAAATAACGATG-CAACTATCCCAGACAG
61047932 GGTCTTACACGTAAATCA
1 GGTCTTACACG-AAATCA
61047950 TAAGTTGATG
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.23
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATAACGATGCAACTATCCCAGACAG
Found at i:61047948 original size:43 final size:43
Alignment explanation
Indices: 61047828--61047986 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
61047818 AGCTCGTACA
** *
61047828 ATGCCAATGTCCCAGATGTGGTCTTACATGT-AATCAAATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAAT-ACG
* * *
61047871 ATG-CAACTATCCCAGGCAGGGTCTTACACG-AAATCAAATACG
1 ATGCCAA-TGTCCCAGACATGGTCTTACACGTAAATCAAATACG
* *
61047913 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAAGT-TG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCA-AA-TACG
* *
61047957 ATGCCAACGTCCCAGACTTGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
61047987 ATAACACATA
Statistics
Matches: 96, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 29 0.30
43 36 0.38
44 30 0.31
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATACG
Found at i:61053091 original size:27 final size:27
Alignment explanation
Indices: 61053027--61053290 Score: 180
Period size: 27 Copynumber: 9.9 Consensus size: 27
61053017 AATACTTTAG
* *
61053027 TTTACCAAATTACTAAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
61053054 CTTCCAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *****
61053081 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** * *
61053108 TTTAC-AAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
61053134 TTTACAAAATTACCAAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *
61053161 -TGAGCAAAATTACCAAAATACCC-CTA
1 TTTA-CAAAATTACCAAAATACCCTCGA
** *
61053187 GTTTGTAAAATTACCAAAATACCC-CTA
1 -TTTACAAAATTACCAAAATACCCTCGA
* *
61053214 TCTTATATAATTACCAAAATACCC-CTGA
1 T-TTACAAAATTACCAAAATACCCTC-GA
*** * * *
61053242 TTTGTGAAATTATCGAAATATCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
**
61053269 TTTGTAAAA-TACCAAAATACCC
1 TTTACAAAATTACCAAAATACCC
61053291 CTGTAGGGTA
Statistics
Matches: 189, Mismatches: 41, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
26 35 0.19
27 150 0.79
28 4 0.02
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.30
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:61053139 original size:53 final size:54
Alignment explanation
Indices: 61053045--61053146 Score: 127
Period size: 53 Copynumber: 1.9 Consensus size: 54
61053035 ATTACTAAAA
* *
61053045 TACCCTCGACTTCCAAAATTACCAAAGTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTACTGTTT
* * * *
61053099 TACCCTCGATTTAC-AAATTACTGAAA-TACCCTTGGTTTACAAAATTAC
1 TACCCTCGACTTACAAAATTAC-CAAAGTACCCTCGATTTACAAAATTAC
61053147 CAAAATACCC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
53 26 0.63
54 15 0.37
ACGTcount: A:0.33, C:0.25, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTACTGTTT
Found at i:61053183 original size:80 final size:81
Alignment explanation
Indices: 61053027--61053237 Score: 180
Period size: 80 Copynumber: 2.6 Consensus size: 81
61053017 AATACTTTAG
* * * *
61053027 TTTACCAAATTACTAAAATACCCTCGACTTCCAAAATTACCAAAGTACCCTCGATTTACAGAATT
1 TTTACCAAATTACTAAAATACCCTCGACTTACAAAATTACCAAAATACCCTCGATTGACAAAATT
*****
61053092 ACTGTTTTACCCTCGA
66 ACCAAAATACCCTCGA
* * **
61053108 TTTA-CAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TGAGCAAAAT
1 TTTACCAAATTACTAAAATACCCTCGACTTACAAAATTACCAAAATACCCTCGATTGA-CAAAAT
* *
61053171 TACCAAAATACCCCTAGT
65 TACCAAAATA-CCCTCGA
* * * *
61053189 TTGTA--AAATTACCAAAATACCC-CTATCTTATATAATTACCAAAATACCC
1 TT-TACCAAATTACTAAAATACCCTCGA-CTTACAAAATTACCAAAATACCC
61053238 CTGATTTGTG
Statistics
Matches: 103, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
79 2 0.02
80 53 0.51
81 46 0.45
82 2 0.02
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (81 bp):
TTTACCAAATTACTAAAATACCCTCGACTTACAAAATTACCAAAATACCCTCGATTGACAAAATT
ACCAAAATACCCTCGA
Found at i:61053890 original size:27 final size:27
Alignment explanation
Indices: 61053860--61053967 Score: 130
Period size: 27 Copynumber: 4.0 Consensus size: 27
61053850 ATTCTGTTAA
* *
61053860 GTGGCTCTGCCACATTATCTGTTTTTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
61053887 GTGGCTATGCCACAAATATCT-TTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
61053914 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* * *
61053941 GTGACTCTGTCACAATATTTG-TTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
61053967 G
1 G
61053968 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 12 0.17
27 52 0.74
28 6 0.09
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.39
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:61054123 original size:6 final size:6
Alignment explanation
Indices: 61054108--61054216 Score: 80
Period size: 6 Copynumber: 17.8 Consensus size: 6
61054098 ATTTTGTTAC
* * * *
61054108 CTGATA CTGATT CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTAATT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
* * * *
61054157 CTAATT CTGATT CTG-TCA CTTGATT CTGATT CTGATT CTCATT TTGATT
1 CTGATT CTGATT CTGAT-T C-TGATT CTGATT CTGATT CTGATT CTGATT
61054206 CT-ATTT CTGAT
1 CTGA-TT CTGAT
61054217 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
5 3 0.04
6 71 0.87
7 6 0.07
8 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:61054214 original size:43 final size:43
Alignment explanation
Indices: 61054114--61054207 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
61054104 TTACCTGATA
61054114 CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATT
* * * *
61054157 CTAATTCTGATTCTGTCACTTGATTCTGATTCTGATTCTCATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATT
*
61054200 TTGATTCT
1 CTGATTCT
61054208 ATTTCTGATA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.19, C:0.20, G:0.12, T:0.49
Consensus pattern (43 bp):
CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATT
Found at i:61054264 original size:31 final size:32
Alignment explanation
Indices: 61054229--61054293 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 32
61054219 TGTTTCTTAT
61054229 TCTG-TAATGGGCTAAGGCCC-ATCTGGTACTG
1 TCTGTTAATGGGCTAAGGCCCAAT-TGGTACTG
61054260 TCTGTTATAATGGGCTAAGGCCCAATTGGTACTG
1 TCTG-T-TAATGGGCTAAGGCCCAATTGGTACTG
61054294 AAACTGTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
31 4 0.13
34 24 0.80
35 2 0.07
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (32 bp):
TCTGTTAATGGGCTAAGGCCCAATTGGTACTG
Found at i:61056914 original size:95 final size:96
Alignment explanation
Indices: 61056797--61057112 Score: 570
Period size: 95 Copynumber: 3.3 Consensus size: 96
61056787 AGATAAATAT
*
61056797 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
61056862 AGCCGAATGGCTAATGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
61056893 ATATGTATATG-GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
*
61056957 AGCCGAATGGCTAGTGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
61056988 ATATGTATATGTGGTAAAG-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATA--TGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
*
61057050 AGCCGAATGGCTAATG-CAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
61057080 ATATGTATATGTGGTAAAGCCGAATGGCTAGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTG
61057113 ATTCGGCTAG
Statistics
Matches: 214, Mismatches: 4, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
92 32 0.15
93 34 0.16
95 130 0.61
96 18 0.08
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (96 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:61056927 original size:47 final size:48
Alignment explanation
Indices: 61056797--61057112 Score: 561
Period size: 48 Copynumber: 6.7 Consensus size: 48
61056787 AGATAAATAT
*
61056797 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
61056845 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
61056893 ATATGTATATG-GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
61056940 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
61056988 ATATGTATATGTGGTAAAG-CGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
61057035 ATATGTATA--TGGTAAAGCCGAATGGCTAATG-CAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
61057080 ATATGTATATGTGGTAAAGCCGAATGGCTAGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTG
61057113 ATTCGGCTAG
Statistics
Matches: 260, Mismatches: 4, Indels: 9
0.95 0.01 0.03
Matches are distributed among these distances:
45 30 0.12
46 12 0.05
47 104 0.40
48 114 0.44
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:61057332 original size:37 final size:37
Alignment explanation
Indices: 61057282--61057384 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
61057272 GGAAATATAT
61057282 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
61057319 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
61057356 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
61057385 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:61058715 original size:40 final size:40
Alignment explanation
Indices: 61058661--61058815 Score: 215
Period size: 40 Copynumber: 3.9 Consensus size: 40
61058651 ATTGAGAGTT
* * *
61058661 ATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
61058701 TTATGTCCCGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
61058741 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
61058781 ATATATCCAGGCTAA-ACCTCGAAG-GCATTCGTGCT
1 ATATATCCAGGCTAAGTCC-CGAAGAGCATTCGTGCT
61058816 GGAATTATGA
Statistics
Matches: 104, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
39 13 0.12
40 91 0.88
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:61058892 original size:29 final size:29
Alignment explanation
Indices: 61058858--61058922 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
61058848 CAATCGAGCG
61058858 CTATGTGCACGAGATT-GGTAATTGAGGCA
1 CTATGTGCACGAG-TTCGGTAATTGAGGCA
** **
61058887 CTATGTGTGCGAGTTCTTTAATTGAGGCA
1 CTATGTGCACGAGTTCGGTAATTGAGGCA
61058916 CTATGTG
1 CTATGTG
61058923 TGCTAGTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 2 0.06
29 29 0.94
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (29 bp):
CTATGTGCACGAGTTCGGTAATTGAGGCA
Found at i:61058923 original size:29 final size:29
Alignment explanation
Indices: 61058876--61058955 Score: 126
Period size: 29 Copynumber: 2.8 Consensus size: 29
61058866 ACGAGATTGG
*
61058876 TAATTGAGGCACTATGTGTGCGAGTTCTT
1 TAATTGAGGCACTATGTGTGCGAGTTCTA
*
61058905 TAATTGAGGCACTATGTGTGCTAGTTCTA
1 TAATTGAGGCACTATGTGTGCGAGTTCTA
*
61058934 TAATCGA-GCACTATGTGTGCGA
1 TAATTGAGGCACTATGTGTGCGA
61058956 AATCAGTCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 14 0.30
29 33 0.70
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (29 bp):
TAATTGAGGCACTATGTGTGCGAGTTCTA
Found at i:61062557 original size:48 final size:48
Alignment explanation
Indices: 61062486--61063009 Score: 852
Period size: 48 Copynumber: 10.7 Consensus size: 48
61062476 AGATAAATAT
*
61062486 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
61062534 ATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
61062582 ATATGTATATGGGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
61062630 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
61062678 ATATGTATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
61062726 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGATTCGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCC-----G--A---A-T-GGCTAGTGTGAAATATGTATGAG
61062786 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
61062834 ATATGTATATGTGGTAAAGTCGAATGGCTAGTGTG-AATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
61062881 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
61062929 ATATGTATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
61062977 ATATGTATATGTGGTAAAGCCGAATGGCTAGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTG
61063010 ATTCGGCTAG
Statistics
Matches: 449, Mismatches: 14, Indels: 26
0.92 0.03 0.05
Matches are distributed among these distances:
47 46 0.10
48 351 0.78
49 1 0.00
50 1 0.00
53 2 0.00
55 2 0.00
58 1 0.00
59 1 0.00
60 44 0.10
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:61062891 original size:95 final size:96
Alignment explanation
Indices: 61062763--61063009 Score: 460
Period size: 95 Copynumber: 2.6 Consensus size: 96
61062753 CTAGTGATTC
61062763 GGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 GGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
* *
61062828 TATGAGATATGTATATGTGGTAAAGTCGAAT
66 TATGAGATATGTATACGTGGTAAAGCCGAAT
*
61062859 GGCTAGTGTG-AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATG
1 GGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
61062923 TATGAGATATGTATACGTGGTAAAGCCGAAT
66 TATGAGATATGTATACGTGGTAAAGCCGAAT
61062954 GGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTG
1 GGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTG
61063010 ATTCGGCTAG
Statistics
Matches: 147, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
95 92 0.63
96 55 0.37
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (96 bp):
GGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
TATGAGATATGTATACGTGGTAAAGCCGAAT
Found at i:61062965 original size:251 final size:252
Alignment explanation
Indices: 61062511--61063038 Score: 977
Period size: 251 Copynumber: 2.1 Consensus size: 252
61062501 AAAGCCGAAT
*
61062511 GGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATG
1 GGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATG
61062576 TATGAGATATGTATATGGGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
66 TATGAGATATGTATATGGGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
61062641 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATACGTGGTAAAGCCGAATGGC
131 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATACGTGGTAAAGCCGAATGGC
61062706 TAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGATTC
196 TAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGATTC
* *
61062763 GGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 GGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATG
* * *
61062828 TATGAGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTG-AATATGTATGAGATATGTATATG
66 TATGAGATATGTATATGGGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
*
61062892 TGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATACGTGGTAAAGCCGAATGGC
131 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATACGTGGTAAAGCCGAATGGC
61062957 TAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGATTC
196 TAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGATTC
*
61063014 GGCTAGTGTGAAATATGTAGGAGAT
1 GGCTAGTGTGAAATATGTATGAGAT
61063039 GTGTGTATAT
Statistics
Matches: 268, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
251 168 0.63
252 100 0.37
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (252 bp):
GGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATG
TATGAGATATGTATATGGGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATACGTGGTAAAGCCGAATGGC
TAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGATTC
Found at i:61063229 original size:37 final size:37
Alignment explanation
Indices: 61063179--61063281 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
61063169 GGAAATATAT
*
61063179 TCTGGGTAAGACCCGGTGACTACGTGTGGAGATTATG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
61063216 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
61063253 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCTGGGTAAGACCCGATGACTACGTGTGG
61063282 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:61070731 original size:30 final size:30
Alignment explanation
Indices: 61070685--61070744 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
61070675 ATAACCACAC
* *
61070685 GCACGAATGCCCTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCCTCGGGTATTAGCCCGGAT
*
61070715 GCACAAATGCCTTCGGGTATTAGCCCGGAT
1 GCACAAATGCCCTCGGGTATTAGCCCGGAT
61070745 ATAACAACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (30 bp):
GCACAAATGCCCTCGGGTATTAGCCCGGAT
Found at i:61070769 original size:40 final size:40
Alignment explanation
Indices: 61070715--61070858 Score: 181
Period size: 40 Copynumber: 3.7 Consensus size: 40
61070705 TAGCCCGGAT
*
61070715 GCACAAATGCCTTCGGGTATTAGCCCGGATATAACAACTT
1 GCACAAATGCCTTCGGGTATTAGCCCGGATATAACAACTA
*
61070755 GCACAAATGCCTTCGGGTATTAGCCCGGATATATC-ACTA
1 GCACAAATGCCTTCGGGTATTAGCCCGGATATAACAACTA
* * *
61070794 GCACAATTGCCTTC-GGTCTTAACCCGGATAT-A-AACTA
1 GCACAAATGCCTTCGGGTATTAGCCCGGATATAACAACTA
* *
61070831 GCATAAATGTCTTCGGG-ACTTAGCCCGG
1 GCACAAATGCCTTCGGGTA-TTAGCCCGG
61070859 GTATCATTCA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
37 15 0.17
38 25 0.28
39 16 0.18
40 34 0.38
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTATTAGCCCGGATATAACAACTA
Found at i:61070854 original size:76 final size:79
Alignment explanation
Indices: 61070715--61070858 Score: 197
Period size: 76 Copynumber: 1.9 Consensus size: 79
61070705 TAGCCCGGAT
* *
61070715 GCACAAATGCCTTCGGGTATTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCC
1 GCACAAATGCCTTCGGGTATTAACCCGGATATAACAACTAGCACAAATGCCTTCGGGTATTAGCC
61070780 CGGATATATCACTA
66 CGGATATATCACTA
* * * *
61070794 GCACAATTGCCTTC-GGTCTTAACCCGGATAT-A-AACTAGCATAAATGTCTTCGGG-ACTTAGC
1 GCACAAATGCCTTCGGGTATTAACCCGGATATAACAACTAGCACAAATGCCTTCGGGTA-TTAGC
61070855 CCGG
65 CCGG
61070859 GTATCATTCA
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
75 1 0.02
76 28 0.48
77 1 0.02
78 15 0.26
79 13 0.22
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTATTAACCCGGATATAACAACTAGCACAAATGCCTTCGGGTATTAGCC
CGGATATATCACTA
Found at i:61071046 original size:123 final size:123
Alignment explanation
Indices: 61070827--61071288 Score: 843
Period size: 123 Copynumber: 3.8 Consensus size: 123
61070817 CCGGATATAA
* * * * * * *
61070827 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
61070892 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
61070950 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
61071015 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
61071073 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
61071138 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
61071196 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
61071261 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
61071289 CACATAATTC
Statistics
Matches: 330, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
123 330 1.00
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:61078210 original size:40 final size:39
Alignment explanation
Indices: 61078145--61078348 Score: 221
Period size: 40 Copynumber: 5.1 Consensus size: 39
61078135 CGGAATACAA
* *
61078145 CCGGATATAACCAC-ACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAA-CACTA-GCACAAATGCCTTCGGGTCTTAGC
* *
61078185 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
61078225 CCGGATATAACAACTTGCACAAATGCATTCGGGTATTAGC
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
61078265 CCGGATATAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
61078305 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGC
61078345 CCGG
1 CCGG
61078349 GTATCATTCA
Statistics
Matches: 141, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 139 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61078504 original size:95 final size:95
Alignment explanation
Indices: 61078341--61078532 Score: 321
Period size: 95 Copynumber: 2.0 Consensus size: 95
61078331 CTTCGGGACT
* * * *
61078341 TAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCAATAATCATTACACATCCATATTTC
1 TAGCCCGGGTACCATTCAAATACTCATACACACATAAATCAATAATCATTACACATCCATATTTC
*
61078406 ATTTTCGTTACTAAGGCTCGAACACAAACA
66 ATTTTCGTTACTAAGGCTCAAACACAAACA
* *
61078436 TAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATAATTATTACACATCCATATTTC
1 TAGCCCGGGTACCATTCAAATACTCATACACACATAAATCAATAATCATTACACATCCATATTTC
61078501 ATTTTCGTTACTAAGGCTCAAACACAAACA
66 ATTTTCGTTACTAAGGCTCAAACACAAACA
61078531 TA
1 TA
61078533 TCACTAGCAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 90 1.00
ACGTcount: A:0.36, C:0.25, G:0.09, T:0.30
Consensus pattern (95 bp):
TAGCCCGGGTACCATTCAAATACTCATACACACATAAATCAATAATCATTACACATCCATATTTC
ATTTTCGTTACTAAGGCTCAAACACAAACA
Found at i:61078590 original size:64 final size:64
Alignment explanation
Indices: 61078517--61078713 Score: 149
Period size: 64 Copynumber: 3.2 Consensus size: 64
61078507 GTTACTAAGG
61078517 CTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATA
1 CTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATA
* * * * * * * *** * *** *
61078581 CTCATACACACATATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AA
1 CTCAAACACAAACATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAA
**
61078638 GG
63 TA
61078640 CTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATA
1 CTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATA
*
61078704 CTCATACACA
1 CTCAAACACA
61078714 CATATGTCAA
Statistics
Matches: 87, Mismatches: 35, Indels: 22
0.60 0.24 0.15
Matches are distributed among these distances:
58 1 0.01
59 24 0.28
60 7 0.08
61 7 0.08
62 7 0.08
63 7 0.08
64 33 0.38
65 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (64 bp):
CTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATA
Found at i:61078655 original size:123 final size:123
Alignment explanation
Indices: 61078436--61078750 Score: 612
Period size: 123 Copynumber: 2.6 Consensus size: 123
61078426 AACACAAACA
*
61078436 TAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATAATTATTACACATCCATATTTC
1 TAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATAATCATTACACATCCATATTTC
61078501 ATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACT
66 ATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACT
61078559 TAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATAATCATTACACATCCATATTTC
1 TAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATAATCATTACACATCCATATTTC
61078624 ATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACT
66 ATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACT
*
61078682 TAGCCCGGGTACCATTCAAATACTCATACACACATATGTCAATAATCATTACACATCCATATTTC
1 TAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATAATCATTACACATCCATATTTC
61078747 ATTT
66 ATTT
61078751 CACATAATTC
Statistics
Matches: 190, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 190 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (123 bp):
TAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATAATCATTACACATCCATATTTC
ATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACT
Found at i:61083829 original size:21 final size:21
Alignment explanation
Indices: 61083803--61083848 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
61083793 CCTAGGGACG
*
61083803 AAATTGAATATGAATTGAATT
1 AAATTGAATATGAAATGAATT
*
61083824 AAATTGAATATGAAATGGATT
1 AAATTGAATATGAAATGAATT
61083845 AAAT
1 AAAT
61083849 CGACATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (21 bp):
AAATTGAATATGAAATGAATT
Found at i:61085587 original size:2 final size:2
Alignment explanation
Indices: 61085580--61085605 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
61085570 GCTTCGCCAC
61085580 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
61085606 CTGTTTTGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:61089498 original size:40 final size:40
Alignment explanation
Indices: 61089301--61089504 Score: 230
Period size: 40 Copynumber: 5.1 Consensus size: 40
61089291 TGAATGTTAC
* * * * **
61089301 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * * *
61089341 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-GGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGG-TTATAT
* *
61089381 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
61089421 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * **
61089461 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
61089501 CCGG
1 CCGG
61089505 TTGTATTCCG
Statistics
Matches: 141, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
40 140 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
Found at i:61097622 original size:40 final size:40
Alignment explanation
Indices: 61097577--61097743 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
61097567 CGGAATATAA
61097577 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
61097617 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
61097657 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
61097697 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61097736 CCGGATAT
1 CCGGATAT
61097744 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61097727 original size:80 final size:79
Alignment explanation
Indices: 61097577--61097743 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
61097567 CGGAATATAA
* *
61097577 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
61097642 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
61097657 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
61097719 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
61097736 CCGGATAT
1 CCGGATAT
61097744 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:61098588 original size:17 final size:19
Alignment explanation
Indices: 61098565--61098610 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
61098555 AAGAAGCATG
61098565 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
61098583 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
61098601 AATCATGCTC
1 AATCATGCTC
61098611 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:61105717 original size:40 final size:40
Alignment explanation
Indices: 61105672--61105838 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
61105662 CGGAATATAA
61105672 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
61105712 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
61105752 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
61105792 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61105831 CCGGATAT
1 CCGGATAT
61105839 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61105822 original size:80 final size:79
Alignment explanation
Indices: 61105672--61105838 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
61105662 CGGAATATAA
* *
61105672 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
61105737 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
61105752 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
61105814 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
61105831 CCGGATAT
1 CCGGATAT
61105839 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:61106682 original size:17 final size:19
Alignment explanation
Indices: 61106659--61106704 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
61106649 AAGAAGCATG
61106659 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
61106677 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
61106695 AATCATGCTC
1 AATCATGCTC
61106705 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:61113668 original size:40 final size:40
Alignment explanation
Indices: 61113623--61113789 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
61113613 CGGAATATAA
61113623 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
61113663 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
61113703 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
61113743 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61113782 CCGGATAT
1 CCGGATAT
61113790 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61113773 original size:80 final size:79
Alignment explanation
Indices: 61113623--61113789 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
61113613 CGGAATATAA
* *
61113623 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
61113688 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
61113703 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
61113765 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
61113782 CCGGATAT
1 CCGGATAT
61113790 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:61114634 original size:17 final size:19
Alignment explanation
Indices: 61114611--61114656 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
61114601 AAGAAGCATG
61114611 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
61114629 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
61114647 AATCATGCTC
1 AATCATGCTC
61114657 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:61115995 original size:40 final size:40
Alignment explanation
Indices: 61115798--61116001 Score: 219
Period size: 40 Copynumber: 5.1 Consensus size: 40
61115788 TGAATGATAC
* * * * * **
61115798 CCGGGCTAAGTCTCGAAGACATTTCTGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * * **
61115838 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * *
61115878 CTGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
61115918 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * **
61115958 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
61115998 CCGG
1 CCGG
61116002 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
Found at i:61122815 original size:25 final size:25
Alignment explanation
Indices: 61122780--61122827 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61122770 TTTAGCCCGG
* *
61122780 ATAAGCTTCTTGTTACATGGCTCAC
1 ATAAGCATCTTATTACATGGCTCAC
*
61122805 ATAAGCATCTTATTATATGGCTC
1 ATAAGCATCTTATTACATGGCTC
61122828 GAGAGAGTGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.38
Consensus pattern (25 bp):
ATAAGCATCTTATTACATGGCTCAC
Found at i:61128903 original size:6 final size:6
Alignment explanation
Indices: 61128885--61128973 Score: 58
Period size: 6 Copynumber: 14.3 Consensus size: 6
61128875 AAGAAACATT
* *
61128885 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
61128934 ATTAGA ATCAGT ATCAGGTA A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATC-AGA ATCAGA AT
61128974 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 18
0.70 0.11 0.20
Matches are distributed among these distances:
5 4 0.06
6 47 0.73
7 11 0.17
8 2 0.03
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:61128930 original size:31 final size:31
Alignment explanation
Indices: 61128894--61128973 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
61128884 TATCAGAACT
* *
61128894 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
61128925 AGAATCAGAATTAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
61128956 AGAATCAAAAATCAGAAT
1 AGAATC-AGAATCAGAAT
61128974 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 33 0.79
32 9 0.21
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:61129140 original size:27 final size:26
Alignment explanation
Indices: 61129110--61129211 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
61129100 GCTCAGTTAT
* *
61129110 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
61129137 CAGATATTGTGGCAGAGCCACTAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
61129163 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
61129191 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
61129212 TTAACAGCAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:61129194 original size:54 final size:53
Alignment explanation
Indices: 61129110--61129212 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 53
61129100 GCTCAGTTAT
* * * *
61129110 CAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCACTAGAA
1 CAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCACTAGAA
* *
61129163 CAGATATTTGTGGCATAGCCACCAGAAACAGATAATGTGGCAAAGCCACT
1 CAGATA-TTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCACT
61129213 TAACAGCATA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 6 0.14
54 37 0.86
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (53 bp):
CAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCACTAGAA
Found at i:61129237 original size:54 final size:53
Alignment explanation
Indices: 61129110--61129229 Score: 118
Period size: 54 Copynumber: 2.3 Consensus size: 53
61129100 GCTCAGTTAT
* * * * * * *
61129110 CAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCACTAGAA
1 CAGATATCGTGGCAAAGCCACCAGAAACAGATAATGTGGCAAAGCCACTAGAA
* * *
61129163 CAGATATTTGTGGCATAGCCACCAGAAACAGATAATGTGGCAAAGCCACT-TAA
1 CAGATA-TCGTGGCAAAGCCACCAGAAACAGATAATGTGGCAAAGCCACTAGAA
61129216 CAGCATA-CGTGGCA
1 CAG-ATATCGTGGCA
61129230 CAAAGCCATC
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
52 6 0.11
53 11 0.19
54 40 0.70
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (53 bp):
CAGATATCGTGGCAAAGCCACCAGAAACAGATAATGTGGCAAAGCCACTAGAA
Found at i:61129377 original size:22 final size:23
Alignment explanation
Indices: 61129343--61129404 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 23
61129333 GCAAATACGT
*
61129343 TTGGCACACAGCCATAAT-TAGG
1 TTGGCACAAAGCCATAATGTAGG
* *
61129365 TTGGTACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGTAGG
*
61129387 TTGACACAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
61129405 CAGAAGGCTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGTAGG
Found at i:61129972 original size:81 final size:81
Alignment explanation
Indices: 61129832--61130245 Score: 505
Period size: 81 Copynumber: 5.1 Consensus size: 81
61129822 GGGGCAAAAT
* * * * *
61129832 GGTAATTTTACCCCACAA-GGTATCTCGGTAATTCCACCCTACAGGGGTATTTCGATAATTCTAT
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
*
61129896 CCTACAGGAGTATTTC
66 CCTACAGGGGTATTTC
* * *
61129912 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTA-TTCTGGTAATTCTA
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC-GGTAATTCTA
61129976 CCCTACAGGGGTATTTC
65 CCCTACAGGGGTATTTC
* * * * *
61129993 GGTAATTTTACCCTACAGGGGTATTCCGATAATTCTACCATACAGGGGTATTTCAGTAATTCTAC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
*
61130058 CCTACAAGGGTATTTC
66 CCTACAGGGGTATTTC
* * *
61130074 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTCTAC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
61130139 CCTACAGGGGTATTTC
66 CCTACAGGGGTATTTC
* * * ** * *
61130155 AGTAATTTTACCCTACAAGGGTATTTTGTTAATT-T-CACAAATCAGGGGTATTTTGGTAATTTT
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTAC-CCTA-CAGGGGTATTTCGGTAATTCT
** *
61130218 A-CAAACCAGGGGTATTTT
64 ACCCTA-CAGGGGTATTTC
61130236 GGTAATTTTA
1 GGTAATTTTA
61130246 TTAATCGAGG
Statistics
Matches: 292, Mismatches: 36, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
79 1 0.00
80 23 0.08
81 265 0.91
82 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (81 bp):
GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
CCTACAGGGGTATTTC
Found at i:61130189 original size:27 final size:27
Alignment explanation
Indices: 61129832--61130180 Score: 486
Period size: 27 Copynumber: 13.0 Consensus size: 27
61129822 GGGGCAAAAT
* * * *
61129832 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61129858 GGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
61129885 GATAATTCTATCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
61129912 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61129939 GGTAATTCTACCTTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
61129965 TGGTAATTCTACCCTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* *
61129993 GGTAATTTTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61130020 GATAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61130047 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61130074 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61130101 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
61130128 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
61130155 AGTAATTTTACCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
61130181 TGTTAATTTC
Statistics
Matches: 289, Mismatches: 31, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
26 17 0.06
27 269 0.93
28 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:61130203 original size:27 final size:27
Alignment explanation
Indices: 61130119--61130674 Score: 346
Period size: 27 Copynumber: 20.6 Consensus size: 27
61130109 TACCCTACAA
* **
61130119 GGGTATTTTGGTAATTCTAC-CCTACAG
1 GGGTATTTTGGTAATTTTACAAAT-CAG
** ** *
61130146 GGGTATTTCAGTAATTTTAC-CCTACAA
1 GGGTATTTTGGTAATTTTACAAAT-CAG
* *
61130173 GGGTATTTTGTTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAATCAG
*
61130200 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAG
**
61130227 GGGTATTTTGGTAATTTTATTAATC-G
1 GGGTATTTTGGTAATTTTACAAATCAG
** *
61130253 AGGGTATTTTGGTAATTTTGTAAATCAA
1 -GGGTATTTTGGTAATTTTACAAATCAG
** ** *
61130281 GGGTATTTCAGTAATTTTGTAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCAG
**** * **
61130308 GGGTAAAACGGTAATTCTATCTTA-CAG
1 GGGTATTTTGGTAATTTTA-CAAATCAG
* **
61130335 GAGTATTTCAGTAATTTTACAAATC-G
1 GGGTATTTTGGTAATTTTACAAATCAG
* ** * *
61130361 AAGGTATTTCAGTAATTTTGCAAA-CTG
1 -GGGTATTTTGGTAATTTTACAAATCAG
* *
61130388 AGGGTATTTCGATAATTTTACAAATC-G
1 -GGGTATTTTGGTAATTTTACAAATCAG
* * *
61130415 AGGATATTTAGGTAATTTTATAAATC-G
1 -GGGTATTTTGGTAATTTTACAAATCAG
** * *
61130442 AGGGTACGTTGGTAACTTTACAAGTC-G
1 -GGGTATTTTGGTAATTTTACAAATCAG
*** **
61130469 AGGGTATTTCAATAATTTTACAGGTC-G
1 -GGGTATTTTGGTAATTTTACAAATCAG
*** * * *
61130496 AGGGTATTTCAATAGTTTCACAAATCAA
1 -GGGTATTTTGGTAATTTTACAAATCAG
61130524 GGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAATC-AG
* *
61130551 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAG
61130578 GGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAATC-AG
* * *
61130605 GGGTATTTTGGTAATTTTAAAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAG
* *
61130632 GGGTATTTTTGTAA-TTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAG
61130658 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
61130675 GGTAAACTAA
Statistics
Matches: 431, Mismatches: 84, Indels: 28
0.79 0.15 0.05
Matches are distributed among these distances:
26 30 0.07
27 396 0.92
28 5 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAG
Found at i:61130214 original size:54 final size:54
Alignment explanation
Indices: 61129832--61130242 Score: 454
Period size: 54 Copynumber: 7.6 Consensus size: 54
61129822 GGGGCAAAAT
* * * * *
61129832 GGTAATTTTACCCCACAA-GGTATCTCGGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTTGGTAATTCTACCATACAGGGGTATTTC
* * * * *
61129885 GATAATTCTATCCTAC-AGGAGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGG-GTATTTTGGTAATTCTACCATACAGGGGTATTTC
* * * * *
61129939 GGTAATTCTACCTTACAGGGGTATTCTGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTTGGTAATTCTACCATACAGGGGTATTTC
* ** *
61129993 GGTAATTTTACCCTACAGGGGTATTCCGATAATTCTACCATACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTTGGTAATTCTACCATACAGGGGTATTTC
* * * * *
61130047 AGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTTGGTAATTCTACCATACAGGGGTATTTC
* *
61130101 GGTAATTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTTGGTAATTCTACCATACAGGGGTATTTC
* * * *
61130155 AGTAATTTTACCCTACAAGGGTATTTTGTTAATT-T-CACAAATCAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTTGGTAATTCTAC-CATA-CAGGGGTATTTC
** *
61130209 GGTAATTTTA-CAAACCAGGGGTATTTTGGTAATT
1 GGTAATTTTACCCTA-CAAGGGTATTTTGGTAATT
61130243 TTATTAATCG
Statistics
Matches: 314, Mismatches: 38, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
52 2 0.01
53 18 0.06
54 292 0.93
55 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTTGGTAATTCTACCATACAGGGGTATTTC
Found at i:61133827 original size:24 final size:24
Alignment explanation
Indices: 61133800--61133862 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
61133790 CTTATTATGT
61133800 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
61133824 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
61133848 TCGCACACATAGTGC
1 TCGCACACATAGTGC
61133863 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:61140904 original size:24 final size:24
Alignment explanation
Indices: 61140877--61140936 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
61140867 ATTATGATCG
61140877 CACACATAGTGCCATAGTAAATCA
1 CACACATAGTGCCATAGTAAATCA
61140901 CACACATAGTGCCATAGTAAATCA
1 CACACATAGTGCCATAGTAAATCA
61140925 CACACATAGTGC
1 CACACATAGTGC
61140937 ATTTGAGATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (24 bp):
CACACATAGTGCCATAGTAAATCA
Done.