Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 208 of 378
Found at i:61471432 original size:15 final size:15
Alignment explanation
Indices: 61471384--61471452 Score: 79
Period size: 15 Copynumber: 4.7 Consensus size: 15
61471374 CAAAGATAAC
*
61471384 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
61471398 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
61471413 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
61471428 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
61471443 AAGAAACCCA
1 AAGAAACCCA
61471453 AGATACGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
14 9 0.20
15 36 0.78
16 1 0.02
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:61474415 original size:46 final size:45
Alignment explanation
Indices: 61474348--61474521 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 45
61474338 TGTAACCCGC
*
61474348 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCAT
*
61474394 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCAT
* * * *
61474444 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCAT
61474486 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
61474522 ATGCCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
42 5 0.05
43 1 0.01
44 3 0.03
45 28 0.25
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCAT
Found at i:61474514 original size:92 final size:93
Alignment explanation
Indices: 61474356--61474526 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
61474346 GCCCATAAGT
* *
61474356 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61474421 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
61474449 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61474513 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
61474527 AACCATCCTA
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 45 0.60
93 30 0.40
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61477870 original size:20 final size:20
Alignment explanation
Indices: 61477847--61477907 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
61477837 TCTCACGAAC
61477847 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
* **
61477867 TCGGAC-C-A-T-AATGAAC
1 TCGGACTCAACTCAACGAGT
61477883 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
61477903 TCGGA
1 TCGGA
61477908 TGCCCAAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
16 10 0.32
17 2 0.06
18 2 0.06
19 2 0.06
20 15 0.48
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.20
Consensus pattern (20 bp):
TCGGACTCAACTCAACGAGT
Found at i:61480333 original size:30 final size:30
Alignment explanation
Indices: 61480289--61480377 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
61480279 CAAAGATAAC
61480289 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
61480318 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
61480348 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
61480378 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:61480337 original size:15 final size:15
Alignment explanation
Indices: 61480289--61480368 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
61480279 CAAAGATAAC
*
61480289 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
61480303 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
61480318 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
61480333 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
61480348 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
61480363 AAGAAA
1 AAGAAA
61480369 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:61480377 original size:15 final size:15
Alignment explanation
Indices: 61480300--61480377 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
61480290 AGAAAACCGA
61480300 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
61480315 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
61480329 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
61480344 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
61480360 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
61480375 ATA
1 ATA
61480378 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:61483404 original size:47 final size:47
Alignment explanation
Indices: 61483336--61483462 Score: 245
Period size: 47 Copynumber: 2.7 Consensus size: 47
61483326 ATCCATAAGT
61483336 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
*
61483383 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
61483430 GAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC
61483463 CAAATATCCC
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
47 78 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61490428 original size:2 final size:2
Alignment explanation
Indices: 61490421--61490451 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
61490411 GAGACTAGTC
61490421 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
61490452 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:61491688 original size:68 final size:63
Alignment explanation
Indices: 61491541--61491717 Score: 157
Period size: 63 Copynumber: 2.8 Consensus size: 63
61491531 ATATAGTTCG
* * *
61491541 GCTCTCTTGCACACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCAATTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAGCCAATATATCTCGTA
* * *
61491604 GCTCTCTTGT-CTACATGGTGTACACAT-AGTATCACCCATGCGACCTAGCTACATCATAATGTC
1 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGCGACCTAGC--CA--AT-ATATC
*
61491667 TTGTA
59 TCGTA
* ** *
61491672 GCTCTCTTGTACACAT-GTG--CACTCAGCACCATACATGTGACCTAGC
1 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAGC
61491718 TACATACTAT
Statistics
Matches: 93, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
62 1 0.01
63 41 0.44
64 2 0.02
65 22 0.24
67 5 0.05
68 21 0.23
69 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAGCCAATATATCTCGTA
Found at i:61513187 original size:30 final size:30
Alignment explanation
Indices: 61513151--61513219 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
61513141 CACACGAGTG
61513151 GACACACGGGCGTGTGTCTAGGCCGTGTGT
1 GACACACGGGCGTGTGTCTAGGCCGTGTGT
61513181 GACACACGGGCGTGTGTCTAGGCCGTGTGT
1 GACACACGGGCGTGTGTCTAGGCCGTGTGT
61513211 GACACACGG
1 GACACACGG
61513220 ACTGCCCAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.16, C:0.25, G:0.39, T:0.20
Consensus pattern (30 bp):
GACACACGGGCGTGTGTCTAGGCCGTGTGT
Found at i:61515784 original size:22 final size:22
Alignment explanation
Indices: 61515756--61515806 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
61515746 TTGTGCCTAG
* *
61515756 CAGGCTTTATGCTGGTGTTATT
1 CAGGCTTTATACCGGTGTTATT
*
61515778 CAGGCTTTGTACCGGTGTTATT
1 CAGGCTTTATACCGGTGTTATT
61515800 CAGGCTT
1 CAGGCTT
61515807 CGTGCCTAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.14, C:0.18, G:0.27, T:0.41
Consensus pattern (22 bp):
CAGGCTTTATACCGGTGTTATT
Found at i:61518751 original size:3 final size:3
Alignment explanation
Indices: 61518743--61518885 Score: 117
Period size: 3 Copynumber: 46.7 Consensus size: 3
61518733 GGCTCCATCT
** * *
61518743 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTT TAC TCCA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
** ** *
61518789 TCT TAA -AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTT TACT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
** * **
61518834 TGGC TCCA TCT TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 T-AA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
61518881 TAA TA
1 TAA TA
61518886 CAAATAGAAT
Statistics
Matches: 116, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
2 2 0.02
3 109 0.94
4 5 0.04
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:61525891 original size:27 final size:27
Alignment explanation
Indices: 61525853--61525963 Score: 195
Period size: 27 Copynumber: 4.1 Consensus size: 27
61525843 ACAAGATTGT
61525853 TCTAAACCCGAACCAATAGAAAACTAC
1 TCTAAACCCGAACCAATAGAAAACTAC
*
61525880 TCTAAACCCGAACCAATAGAAACCTAC
1 TCTAAACCCGAACCAATAGAAAACTAC
*
61525907 TCTAAACCCGAACCAATAGAAACCTAC
1 TCTAAACCCGAACCAATAGAAAACTAC
*
61525934 TCTAAACCCGAACCAATAAAAAACTAC
1 TCTAAACCCGAACCAATAGAAAACTAC
61525961 TCT
1 TCT
61525964 TGACCAACCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.46, C:0.32, G:0.06, T:0.16
Consensus pattern (27 bp):
TCTAAACCCGAACCAATAGAAAACTAC
Found at i:61527498 original size:23 final size:24
Alignment explanation
Indices: 61527445--61527495 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
61527435 GTTTTATTTT
61527445 AAAACTCTAGTTTTTTTTCTTAAA
1 AAAACTCTAGTTTTTTTTCTTAAA
61527469 AAAACTCTAGTTTTTTTTCTTAAA
1 AAAACTCTAGTTTTTTTTCTTAAA
61527493 AAA
1 AAA
61527496 CTCAAATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.04, T:0.47
Consensus pattern (24 bp):
AAAACTCTAGTTTTTTTTCTTAAA
Found at i:61527527 original size:22 final size:22
Alignment explanation
Indices: 61527484--61527553 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 22
61527474 TCTAGTTTTT
* **
61527484 TTTCTTA-AAAAACTCAAATAA
1 TTTCTTATAAAAACTTACCTAA
61527505 TTTCTTATAAAAACTTACCTAA
1 TTTCTTATAAAAACTTACCTAA
61527527 -TTCTT-TGAAAAAACTCTATCCTAA
1 TTTCTTAT--AAAAACT-TA-CCTAA
61527551 TTT
1 TTT
61527554 AGTTTTTGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 1 0.03
21 12 0.30
22 18 0.45
23 2 0.05
24 5 0.12
25 2 0.05
ACGTcount: A:0.41, C:0.17, G:0.01, T:0.40
Consensus pattern (22 bp):
TTTCTTATAAAAACTTACCTAA
Found at i:61529022 original size:20 final size:21
Alignment explanation
Indices: 61528997--61529036 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
61528987 TGAAGAATGT
61528997 GAGAAG-AAAGAAAAATAAAA
1 GAGAAGAAAAGAAAAATAAAA
61529017 GAGAAGAAAAGAAAAATAAA
1 GAGAAGAAAAGAAAAATAAA
61529037 GAAATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (21 bp):
GAGAAGAAAAGAAAAATAAAA
Found at i:61529047 original size:21 final size:21
Alignment explanation
Indices: 61529003--61529047 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
61528993 ATGTGAGAAG
* *
61529003 AAAGAAAAATAAAAGAGAAGA
1 AAAGAAAAATAAAAGAAAAAA
61529024 AAAGAAAAAT-AAAGAAATAAA
1 AAAGAAAAATAAAAGAAA-AAA
61529045 AAA
1 AAA
61529048 ATTAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (21 bp):
AAAGAAAAATAAAAGAAAAAA
Found at i:61534686 original size:11 final size:11
Alignment explanation
Indices: 61534657--61534686 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
61534647 GATACTCTAG
*
61534657 TAATTAAGTTC
1 TAATTAATTTC
61534668 TAATTAATTTC
1 TAATTAATTTC
61534679 TAATTAAT
1 TAATTAAT
61534687 GATGGGCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (11 bp):
TAATTAATTTC
Found at i:61535234 original size:4 final size:4
Alignment explanation
Indices: 61535225--61535252 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
61535215 AAGATGAAGG
61535225 TTAT TTAT TTAT TTAT TTAT TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT
61535253 AATCAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTAT
Found at i:61537025 original size:70 final size:70
Alignment explanation
Indices: 61536942--61537104 Score: 218
Period size: 70 Copynumber: 2.3 Consensus size: 70
61536932 TCCTCATTGA
* * * * ** *
61536942 AATACCATACCTACATTTTACAACTCGGTATGGGAAATGCCATACCTACGTTTCTTAACTCAGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGGAAATACCATACCTACGTTTCACAAATCAGTA
61537007 TGGAT
66 TGGAT
* ** *
61537012 AATACCATACCTACGTTTCACAACTTAGTATGGTTAATACCATACCTATGTTTCACAAATCAGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGGAAATACCATACCTACGTTTCACAAATCAGTA
61537077 TGGAT
66 TGGAT
*
61537082 GATACCATACCTACGTTTCACAA
1 AATACCATACCTACGTTTCACAA
61537105 TTTTGGCATG
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 81 1.00
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.31
Consensus pattern (70 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGGAAATACCATACCTACGTTTCACAAATCAGTA
TGGAT
Found at i:61537124 original size:35 final size:35
Alignment explanation
Indices: 61536942--61537104 Score: 175
Period size: 35 Copynumber: 4.7 Consensus size: 35
61536932 TCCTCATTGA
* * * **
61536942 AATACCATACCTACATTTTACAACTCGGTATGGGA-
1 AATACCATACCTACGTTTCACAAATTAGTAT-GGAT
* ** * *
61536977 AATGCCATACCTACGTTTCTTAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAAATTAGTATGGAT
* *
61537012 AATACCATACCTACGTTTCACAACTTAGTATGGTT
1 AATACCATACCTACGTTTCACAAATTAGTATGGAT
* *
61537047 AATACCATACCTATGTTTCACAAATCAGTATGGAT
1 AATACCATACCTACGTTTCACAAATTAGTATGGAT
*
61537082 GATACCATACCTACGTTTCACAA
1 AATACCATACCTACGTTTCACAA
61537105 TTTTGGCATG
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
34 3 0.03
35 107 0.97
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAAATTAGTATGGAT
Found at i:61540452 original size:43 final size:43
Alignment explanation
Indices: 61540385--61540471 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
61540375 GTTACATGTA
* * **
61540385 TCGCATCCATTATGAACTTGGACCACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAAATCAGACCACTCAACGAGCTCGGATGC
61540428 TCGCATCCATAATGAAATCAGACCACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAAATCAGACCACTCAACGAGCTCGGATGC
61540471 T
1 T
61540472 AAATATATCA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (43 bp):
TCGCATCCATAATGAAATCAGACCACTCAACGAGCTCGGATGC
Found at i:61540536 original size:43 final size:42
Alignment explanation
Indices: 61540448--61540548 Score: 114
Period size: 43 Copynumber: 2.4 Consensus size: 42
61540438 AATGAAATCA
* * *
61540448 GACCACTCAACGAGCTCGGATGCTAAATATATCACAATCTTG
1 GACCACTCAACAAGCTAGGATGCTAAATATATCACAATCTAG
* * *
61540490 GACCACTCAACAAGTTAGGATTCTCACATATATCACGAA-CTAG
1 GACCACTCAACAAGCTAGGATGCT-AAATATATCAC-AATCTAG
*
61540533 GACCACTCAACGAGCT
1 GACCACTCAACAAGCT
61540549 CAGATTTCTT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 20 0.41
43 27 0.55
44 2 0.04
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.22
Consensus pattern (42 bp):
GACCACTCAACAAGCTAGGATGCTAAATATATCACAATCTAG
Found at i:61543105 original size:26 final size:24
Alignment explanation
Indices: 61543061--61543110 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
61543051 ATTTGTTTTA
*
61543061 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
61543085 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
61543111 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:61545823 original size:32 final size:32
Alignment explanation
Indices: 61545782--61545846 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
61545772 AAATAGTTGT
61545782 ATGGAAACCTCATATCATTGGTTTCATACATA
1 ATGGAAACCTCATATCATTGGTTTCATACATA
61545814 ATGGAAACCTCATATCATTGGTTTCATACATA
1 ATGGAAACCTCATATCATTGGTTTCATACATA
61545846 A
1 A
61545847 ACGGTTATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
ATGGAAACCTCATATCATTGGTTTCATACATA
Found at i:61549332 original size:46 final size:44
Alignment explanation
Indices: 61549274--61549444 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 44
61549264 ACATCTCGTA
*
61549274 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTATC-AG
* * * * *
61549320 GCCGATGCATGTCCCAGAAATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTATC-AG
* *
61549366 GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-ATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCGT-ATCA-G
61549414 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
61549445 AGCTCACACA
Statistics
Matches: 105, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
46 54 0.51
47 29 0.28
48 21 0.20
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTATCAG
Found at i:61552607 original size:79 final size:81
Alignment explanation
Indices: 61552506--61552690 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
61552496 ACGACTCGCT
** * *
61552506 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
61552569 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
61552586 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
61552650 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
61552666 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
61552691 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:61552690 original size:40 final size:39
Alignment explanation
Indices: 61552499--61552690 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
61552489 GGATATAACG
* ** * *
61552499 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
61552539 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
61552579 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
61552618 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
61552658 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
61552691 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:61560636 original size:79 final size:81
Alignment explanation
Indices: 61560535--61560719 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
61560525 ACGACTCGCT
** * *
61560535 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
61560598 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
61560615 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
61560679 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
61560695 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
61560720 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:61560719 original size:40 final size:39
Alignment explanation
Indices: 61560528--61560719 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
61560518 GGATATAACG
* ** * *
61560528 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
61560568 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
61560608 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
61560647 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
61560687 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
61560720 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:61563705 original size:15 final size:17
Alignment explanation
Indices: 61563685--61563721 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
61563675 TAATTAATTT
61563685 CTAATTAACAA-TGGG-
1 CTAATTAACAATTGGGA
*
61563700 CTAATTAAGAATTGGGA
1 CTAATTAACAATTGGGA
61563717 CTAAT
1 CTAAT
61563722 GTGCCAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 10 0.53
16 4 0.21
17 5 0.26
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.30
Consensus pattern (17 bp):
CTAATTAACAATTGGGA
Found at i:61564073 original size:23 final size:23
Alignment explanation
Indices: 61564047--61564091 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
61564037 TGCCCATGTG
61564047 GAGGCAATGCACACACCCGTGTA
1 GAGGCAATGCACACACCCGTGTA
*
61564070 GAGGCAATGCACACGCCCGTGT
1 GAGGCAATGCACACACCCGTGT
61564092 GCATTGGGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.31, G:0.29, T:0.13
Consensus pattern (23 bp):
GAGGCAATGCACACACCCGTGTA
Found at i:61575270 original size:20 final size:20
Alignment explanation
Indices: 61575245--61575282 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
61575235 ATAATATACC
*
61575245 ACATTTAACCATCACATGAA
1 ACATTTAACCATAACATGAA
*
61575265 ACATTTAAGCATAACATG
1 ACATTTAACCATAACATG
61575283 CACAATTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.26
Consensus pattern (20 bp):
ACATTTAACCATAACATGAA
Found at i:61588004 original size:51 final size:51
Alignment explanation
Indices: 61587945--61588046 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
61587935 AATGGTTATC
61587945 ATTGGCACAATTACAACACCAATGGATGATTCATGTCTTCTTATAGGTCTT
1 ATTGGCACAATTACAACACCAATGGATGATTCATGTCTTCTTATAGGTCTT
61587996 ATTGGCACAATTACAACACCAATGGATGATTCATGTCTTCTTATAGGTCTT
1 ATTGGCACAATTACAACACCAATGGATGATTCATGTCTTCTTATAGGTCTT
61588047 CTCCATGGAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (51 bp):
ATTGGCACAATTACAACACCAATGGATGATTCATGTCTTCTTATAGGTCTT
Found at i:61588132 original size:35 final size:35
Alignment explanation
Indices: 61588086--61588156 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
61588076 CTTTTGATAG
61588086 TTCATTAAAAATGGATATAGACGCTACAAATAAAA
1 TTCATTAAAAATGGATATAGACGCTACAAATAAAA
61588121 TTCATTAAAAATGGATATAGACGCTACAAATAAAA
1 TTCATTAAAAATGGATATAGACGCTACAAATAAAA
61588156 T
1 T
61588157 GGACTCCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.27
Consensus pattern (35 bp):
TTCATTAAAAATGGATATAGACGCTACAAATAAAA
Found at i:61592316 original size:40 final size:40
Alignment explanation
Indices: 61592267--61592364 Score: 187
Period size: 40 Copynumber: 2.5 Consensus size: 40
61592257 TTTGGTTTAG
61592267 CCAATGAGACACTGGGTGTTAAATTATTATTTCAAATTAT
1 CCAATGAGACACTGGGTGTTAAATTATTATTTCAAATTAT
61592307 CCAATGAGACACTGGGTGTTAAATTATTATTTCAAATTAT
1 CCAATGAGACACTGGGTGTTAAATTATTATTTCAAATTAT
*
61592347 CCAATGAGGCACTGGGTG
1 CCAATGAGACACTGGGTG
61592365 CCAAACTGGT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (40 bp):
CCAATGAGACACTGGGTGTTAAATTATTATTTCAAATTAT
Found at i:61592722 original size:17 final size:17
Alignment explanation
Indices: 61592700--61592734 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
61592690 GTGAATTTTA
61592700 AATATTCAATTGTGCTT
1 AATATTCAATTGTGCTT
*
61592717 AATATTTAATTGTGCTT
1 AATATTCAATTGTGCTT
61592734 A
1 A
61592735 TTATATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.49
Consensus pattern (17 bp):
AATATTCAATTGTGCTT
Found at i:61593772 original size:16 final size:16
Alignment explanation
Indices: 61593753--61593800 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
61593743 ATTATTATTA
61593753 AATTATATTTAATAAT
1 AATTATATTTAATAAT
61593769 AATTATA-TTAA-AAT
1 AATTATATTTAATAAT
*
61593783 ATGATTAAATTTAATAAT
1 A--ATTATATTTAATAAT
61593801 GTTATTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 4 0.15
16 12 0.44
17 4 0.15
18 3 0.11
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
AATTATATTTAATAAT
Found at i:61593797 original size:26 final size:25
Alignment explanation
Indices: 61593713--61593797 Score: 71
Period size: 26 Copynumber: 3.1 Consensus size: 25
61593703 ATATGAACCA
*
61593713 AATTATATTAATAATGTTATTAAATTAT
1 AATTATATTAA-AAT-ATATTAAATT-T
* * *
61593741 ATATTATTATTAAATTATATTTAATAAT
1 A-ATTA-TATTAAAATATATTAAAT-TT
61593769 AATTATATTAAAATATGATTAAATTT
1 AATTATATTAAAATAT-ATTAAATTT
61593795 AAT
1 AAT
61593798 AATGTTATTA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
26 14 0.30
27 10 0.22
28 10 0.22
29 6 0.13
30 6 0.13
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.49
Consensus pattern (25 bp):
AATTATATTAAAATATATTAAATTT
Found at i:61593797 original size:29 final size:27
Alignment explanation
Indices: 61593713--61593811 Score: 87
Period size: 29 Copynumber: 3.5 Consensus size: 27
61593703 ATATGAACCA
*
61593713 AATTATATTAATAATGTTATTAAATT-AT
1 AATTATATTAA-AAT-ATATTAAATTAAT
* *
61593741 ATATTATTATTAAATTATATTTAA-TAAT
1 A-ATTA-TATTAAAATATATTAAATTAAT
61593769 AATTATATTAAAATATGATTAAATTTAAT
1 AATTATATTAAAATAT-ATTAAA-TTAAT
61593798 AATGT-TATTAAAAT
1 AAT-TATATTAAAAT
61593812 TTAATAACAA
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
26 10 0.17
27 10 0.17
28 10 0.17
29 22 0.37
30 7 0.12
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (27 bp):
AATTATATTAAAATATATTAAATTAAT
Found at i:61594472 original size:23 final size:22
Alignment explanation
Indices: 61594446--61594505 Score: 54
Period size: 23 Copynumber: 2.7 Consensus size: 22
61594436 TTTAATTAGA
61594446 TAATTATTATTTATTTAATATTT
1 TAATTA-TATTTATTTAATATTT
* *
61594469 TAATAAGATATTTA-TTATTATTT
1 TAAT--TATATTTATTTAATATTT
61594492 T-ATTAT-TTTATTTA
1 TAATTATATTTATTTA
61594506 GTATATATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
19 4 0.13
20 5 0.16
22 2 0.06
23 13 0.42
24 6 0.19
25 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TAATTATATTTATTTAATATTT
Found at i:61594478 original size:31 final size:31
Alignment explanation
Indices: 61594436--61594501 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
61594426 TTTATAGTTA
*
61594436 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
* *
61594467 TTTAATAAGATATTTATTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
61594498 TTTA
1 TTTA
61594502 TTTAGTATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:61597985 original size:132 final size:132
Alignment explanation
Indices: 61597585--61598634 Score: 1611
Period size: 132 Copynumber: 8.0 Consensus size: 132
61597575 GAGATTCACT
* * *
61597585 ATCTTCAGTCTGCTCCACTGCTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
61597650 CTTCAGAGAGACAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
66 CTTCAGAGAGACAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
61597715 CA
131 CA
* ****
61597717 ATCTTTAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTATTG
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* * *
61597782 GTT-AGGGAGACAAGATTCGCCATCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
66 CTTCAGAGAGACAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
61597846 CA
131 CA
*
61597848 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTGCAA
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* * * * * * *
61597913 CTTCAGAGAAACAAGATTCGTCTTCTTCAATCTGTTCCATTGTAACTTCAGGGAGACAAAATCTG
66 CTTCAGAGAGACAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
61597978 CA
131 CA
61597980 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* * *
61598045 CTTCAGAGAGACAAGATTCACCGTCTTCGATCTGTTCCACTACAATTTCAGGGAGACAAGATCTG
66 CTTCAGAGAGACAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
61598110 CA
131 CA
* * * **
61598112 ATCTTCAACCTACTCTACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTG
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* * *
61598177 GTT-AGGGAGACAAGATTCGCCATCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
66 CTTCAGAGAGACAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
61598241 CA
131 CA
* * *
61598243 ATCTTTAGCCTACTCCATTACTGTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* ** *
61598308 CTTCAGAGAGACAAGATTCGCCTTCTTTAATCTGTTCCACTGTAACTTCA-GGAGACAAGATCTG
66 CTTCAGAGAGACAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
61598372 CA
131 CA
* * *
61598374 ATCTTCAGCCTACTCCACTACTACGTAGGGAGATAGGATTGTGGCTTAAATCTGCTCCACTGCAA
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* * * * * *
61598439 CTTCAGAGATACAAGATTCACCGTTTTCAATCTGTTCCACTGCAACTTCAAGGAGACAAGATTTG
66 CTTCAGAGAGACAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
61598504 CA
131 CA
* *
61598506 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATTTGCTCCATTGCAA
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* ** *
61598571 CTTCAGAGAGATAAGATTTACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGATCT
66 CTTCAGAGAGACAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCT
61598635 ACAAATTCAC
Statistics
Matches: 827, Mismatches: 88, Indels: 6
0.90 0.10 0.01
Matches are distributed among these distances:
131 358 0.43
132 469 0.57
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (132 bp):
ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
CTTCAGAGAGACAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
CA
Found at i:61598027 original size:263 final size:264
Alignment explanation
Indices: 61597585--61598634 Score: 1604
Period size: 263 Copynumber: 4.0 Consensus size: 264
61597575 GAGATTCACT
* * *
61597585 ATCTTCAGTCTGCTCCACTGCTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* *
61597650 CTTCAGAGAGACAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
66 CTTCAGAGAGACAAGATTCGCCTTCTTCAATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
* **
61597715 CAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTAT
131 CAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGC
*** * * *
61597780 TGGTT-AGGGAGACAAGATTCGCCATCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATC
196 AACTTCAGAGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATC
61597844 TGCA
261 TGCA
*
61597848 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTGCAA
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* * * * *
61597913 CTTCAGAGAAACAAGATTCGTCTTCTTCAATCTGTTCCATTGTAACTTCAGGGAGACAAAATCTG
66 CTTCAGAGAGACAAGATTCGCCTTCTTCAATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
61597978 CAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGC
131 CAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGC
* *
61598043 AACTTCAGAGAGACAAGATTCACCGTCTTCGATCTGTTCCACTACAATTTCAGGGAGACAAGATC
196 AACTTCAGAGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATC
61598108 TGCA
261 TGCA
* * * **
61598112 ATCTTCAACCTACTCTACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTG
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* * * *
61598177 GTT-AGGGAGACAAGATTCGCCATCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
66 CTTCAGAGAGACAAGATTCGCCTTCTTCAATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
* * *
61598241 CAATCTTTAGCCTACTCCATTACTGTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGC
131 CAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGC
* * ** *
61598306 AACTTCAGAGAGACAAGATTCGCCTTCTTTAATCTGTTCCACTGTAACTTCA-GGAGACAAGATC
196 AACTTCAGAGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATC
61598370 TGCA
261 TGCA
* * *
61598374 ATCTTCAGCCTACTCCACTACTACGTAGGGAGATAGGATTGTGGCTTAAATCTGCTCCACTGCAA
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* * * *
61598439 CTTCAGAGATACAAGATTCACCGTT-TTCAATCTGTTCCACTGCAACTTCAAGGAGACAAGATTT
66 CTTCAGAGAGACAAGATTCGCC-TTCTTCAATCTGTTCCACTGCAACTTCAGGGAGACAAGATCT
* *
61598503 GCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATTTGCTCCATTG
130 GCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTG
* * *
61598568 CAACTTCAGAGAGATAAGATTTACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGAT
195 CAACTTCAGAGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGAT
61598633 CT
260 CT
61598635 ACAAATTCAC
Statistics
Matches: 707, Mismatches: 76, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
262 75 0.11
263 500 0.71
264 132 0.19
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (264 bp):
ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
CTTCAGAGAGACAAGATTCGCCTTCTTCAATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
CAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGC
AACTTCAGAGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATC
TGCA
Found at i:61598273 original size:395 final size:394
Alignment explanation
Indices: 61597585--61598634 Score: 1731
Period size: 395 Copynumber: 2.7 Consensus size: 394
61597575 GAGATTCACT
* * *
61597585 ATCTTCAGTCTGCTCCACTGCTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
*
61597650 CTTCAGAGAGACAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
66 CTTCAGAGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
* *
61597715 CAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTAT
131 CAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTAC
61597780 TGGTTAGGGAGACAAGATTCGCCATCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCT
196 TGGTTAGGGAGACAAGATTCGCCATCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCT
61597845 GCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTG
261 GCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTG
* *
61597910 CAACTTCAGAGAAACAAGATTCGTCTTCTTCAATCTGTTCCATTGTAACTTCAGGGAGACAAAAT
326 CAACTTCAGAGAAACAAGATTCGCCTTCTTCAATCTGTTCCACTGTAACTTCA-GGAGACAAAAT
61597975 CTGCA
390 CTGCA
61597980 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* *
61598045 CTTCAGAGAGACAAGATTCACCGTCTTCGATCTGTTCCACTACAATTTCAGGGAGACAAGATCTG
66 CTTCAGAGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
* *
61598110 CAATCTTCAACCTACTCTACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTAC
131 CAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTAC
61598175 TGGTTAGGGAGACAAGATTCGCCATCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCT
196 TGGTTAGGGAGACAAGATTCGCCATCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCT
* * * *
61598240 GCAATCTTTAGCCTACTCCATTACTGTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTG
261 GCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTG
* * *
61598305 CAACTTCAGAGAGACAAGATTCGCCTTCTTTAATCTGTTCCACTGTAACTTCAGGAGACAAGATC
326 CAACTTCAGAGAAACAAGATTCGCCTTCTTCAATCTGTTCCACTGTAACTTCAGGAGACAAAATC
61598370 TGCA
391 TGCA
* * *
61598374 ATCTTCAGCCTACTCCACTACTACGTAGGGAGATAGGATTGTGGCTTAAATCTGCTCCACTGCAA
1 ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
* * * * *
61598439 CTTCAGAGATACAAGATTCACCGTTTTCAATCTGTTCCACTGCAACTTCAAGGAGACAAGATTTG
66 CTTCAGAGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
* * *
61598504 CAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATTTGCTCCATTGC
131 CAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTAC
*** * * ** * *
61598569 AACTTCAGAGAGATAAGATTTACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGATC
196 TGGTT-AGGGAGACAAGATTCGCCATCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATC
61598634 T
260 T
61598635 ACAAATTCAC
Statistics
Matches: 611, Mismatches: 43, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
394 197 0.32
395 414 0.68
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (394 bp):
ATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAA
CTTCAGAGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTG
CAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTAC
TGGTTAGGGAGACAAGATTCGCCATCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCT
GCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTG
CAACTTCAGAGAAACAAGATTCGCCTTCTTCAATCTGTTCCACTGTAACTTCAGGAGACAAAATC
TGCA
Found at i:61598803 original size:64 final size:64
Alignment explanation
Indices: 61598702--61598829 Score: 177
Period size: 64 Copynumber: 2.0 Consensus size: 64
61598692 TCATGTATCT
*
61598702 ATGCTTATGCCAAATAATTAGGATGCTATGACCGAAATGAA-TAAGATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGACCGAAATGAATTAA-ATACTCCTAACTAGATGTG
* * * * **
61598766 ATGCTTATGTCAATTAATTAGGATGTTCTGATTGAAATGAATTAAATACTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGACCGAAATGAATTAAATACTCCTAACTAGATGTG
61598830 TTACGAATGA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
64 53 0.95
65 3 0.05
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGACCGAAATGAATTAAATACTCCTAACTAGATGTG
Found at i:61599577 original size:34 final size:32
Alignment explanation
Indices: 61599539--61599613 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 32
61599529 CGAAATGAAT
61599539 AAATTAATCAAAGAT-TGCAAATGCAATAAGAAGA
1 AAATTAATC-AA-ATCT-CAAATGCAATAAGAAGA
61599573 AAATTAA-C---TCTCAAATGCAATAAGAAGA
1 AAATTAATCAAATCTCAAATGCAATAAGAAGA
61599601 AAATTAACTCAAA
1 AAATTAA-TCAAA
61599614 ATGAATAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
28 25 0.71
29 1 0.03
30 1 0.03
33 1 0.03
34 7 0.20
ACGTcount: A:0.56, C:0.12, G:0.11, T:0.21
Consensus pattern (32 bp):
AAATTAATCAAATCTCAAATGCAATAAGAAGA
Found at i:61599620 original size:26 final size:28
Alignment explanation
Indices: 61599557--61599622 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
61599547 CAAAGATTGC
*
61599557 AAATGCAATAAGAAGAAAATTAACTCTC
1 AAATGCAATAAGAAGAAAATTAACTCTA
61599585 AAATGCAATAAGAAGAAAATTAACTC-A
1 AAATGCAATAAGAAGAAAATTAACTCTA
61599612 AAATG-AATAAG
1 AAATGCAATAAG
61599623 TTAATCAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
26 6 0.16
27 5 0.14
28 26 0.70
ACGTcount: A:0.58, C:0.11, G:0.12, T:0.20
Consensus pattern (28 bp):
AAATGCAATAAGAAGAAAATTAACTCTA
Found at i:61600017 original size:14 final size:13
Alignment explanation
Indices: 61599982--61600021 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
61599972 CGTCTTGGCC
61599982 TCTCCTTTTCTTTT
1 TCTCCTTTT-TTTT
*
61599996 TCT-CTTTTTTCT
1 TCTCCTTTTTTTT
61600008 TCTCCTTTTTTTT
1 TCTCCTTTTTTTT
61600021 T
1 T
61600022 TGAAGTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 6 0.26
13 14 0.61
14 3 0.13
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (13 bp):
TCTCCTTTTTTTT
Found at i:61602721 original size:19 final size:19
Alignment explanation
Indices: 61602695--61602742 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
61602685 TAGTGAAAGT
61602695 TGAATGCAAATG-ATGCAA
1 TGAATGCAAATGTATGCAA
*
61602713 TGCAATGCAAATGTATGGAA
1 TG-AATGCAAATGTATGCAA
61602733 TGAATGCAAA
1 TGAATGCAAA
61602743 AGAAAGGAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 2 0.07
19 18 0.67
20 7 0.26
ACGTcount: A:0.44, C:0.10, G:0.23, T:0.23
Consensus pattern (19 bp):
TGAATGCAAATGTATGCAA
Found at i:61604885 original size:27 final size:27
Alignment explanation
Indices: 61604804--61604899 Score: 74
Period size: 26 Copynumber: 3.6 Consensus size: 27
61604794 TGTGAAAAAG
* * *
61604804 ATTTAACATAAATAAAATAT-AATC-A
1 ATTTAAAATAAATAATATATAAAGCAA
*
61604829 ATTTGAAATAAAATAATATATAAAGCAA
1 ATTTAAAAT-AAATAATATATAAAGCAA
* * *
61604857 ATTTCAAATAAATAATATGTTAAA-TAA
1 ATTTAAAATAAATAATAT-ATAAAGCAA
*
61604884 A-TTAAAATGAATAATA
1 ATTTAAAATAAATAATA
61604900 CACAAAGTAA
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
25 7 0.12
26 23 0.40
27 15 0.26
28 13 0.22
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (27 bp):
ATTTAAAATAAATAATATATAAAGCAA
Found at i:61605094 original size:27 final size:25
Alignment explanation
Indices: 61605053--61605118 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 25
61605043 TAACATATAC
61605053 ATATATAAAAG-TTTTAAGATAAGGA
1 ATATATAAAAGTTTTTAA-ATAAGGA
* *
61605078 GTATATAAAAGAATTTTTAAATAAGTA
1 ATATATAAAAG--TTTTTAAATAAGGA
61605105 ATATATAGAAAGTT
1 ATATATA-AAAGTT
61605119 CAAAATAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
25 10 0.29
26 2 0.06
27 12 0.35
28 10 0.29
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.35
Consensus pattern (25 bp):
ATATATAAAAGTTTTTAAATAAGGA
Found at i:61605276 original size:25 final size:25
Alignment explanation
Indices: 61605248--61605304 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
61605238 TAAAAAAAAT
*
61605248 AATAATATGCAT-AATAATTAAAACA
1 AATAATATACATGAA-AATTAAAACA
* * *
61605273 AATAATGTATATGAAAATTAAAATA
1 AATAATATACATGAAAATTAAAACA
61605298 AATAATA
1 AATAATA
61605305 GTTTAAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 24 0.92
26 2 0.08
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.30
Consensus pattern (25 bp):
AATAATATACATGAAAATTAAAACA
Found at i:61606356 original size:25 final size:25
Alignment explanation
Indices: 61606302--61606367 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
61606292 TATTTTAAAC
*
61606302 TATTATTTATTTTAATTTTCATATA
1 TATTATTTATTTTAATTTTCATACA
* * *
61606327 CATTATTTGTTTTAATTATT-ATGCA
1 TATTATTTATTTTAATT-TTCATACA
61606352 TATTATTATTATTTTA
1 TATTA-T-TTATTTTA
61606368 GATACCTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
25 22 0.69
26 3 0.09
27 7 0.22
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (25 bp):
TATTATTTATTTTAATTTTCATACA
Found at i:61606544 original size:27 final size:27
Alignment explanation
Indices: 61606487--61606545 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
61606477 TTGAACTTTC
* *
61606487 TATATATTACTTATTTAAAAATTCTTT
1 TATATACTACTTATTTAAAAATTCTTA
* *
61606514 TATATACTCCTTATCTTAAAACTT-TTA
1 TATATACTACTTAT-TTAAAAATTCTTA
61606541 TATAT
1 TATAT
61606546 GTATATGTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 19 0.70
28 8 0.30
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.53
Consensus pattern (27 bp):
TATATACTACTTATTTAAAAATTCTTA
Found at i:61606616 original size:27 final size:28
Alignment explanation
Indices: 61606562--61606645 Score: 100
Period size: 29 Copynumber: 3.0 Consensus size: 28
61606552 GTTACTTTGG
61606562 ATTATATTTATATATATATTTATTTTAA
1 ATTATATTTATATATATATTTATTTTAA
* *
61606590 ATTATTTTTGTATATA-ATTTATTTTAA
1 ATTATATTTATATATATATTTATTTTAA
* *
61606617 ATTTCTCATTTACATAT-TATTTATTTTAA
1 A-TTAT-ATTTATATATATATTTATTTTAA
61606646 GCTCTTTTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
27 12 0.26
28 17 0.36
29 18 0.38
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.61
Consensus pattern (28 bp):
ATTATATTTATATATATATTTATTTTAA
Found at i:61606736 original size:27 final size:26
Alignment explanation
Indices: 61606693--61606788 Score: 72
Period size: 26 Copynumber: 3.6 Consensus size: 26
61606683 TTACTTTGTG
* *
61606693 TATTATTCATTTTAATTT-ATTTAACA
1 TATTATTTATTTAAATTTGATTT-ACA
* *
61606719 TATTATTTATTTGAAATTTGCTTTATA
1 TATTATTTATTT-AAATTTGATTTACA
*
61606746 TATTATTTTATTTCAAA-TTGA-TTATA
1 TATTA-TTTATTT-AAATTTGATTTACA
*
61606772 TTTTATTTATGTTAAAT
1 TATTATTTAT-TTAAAT
61606789 CTTTTTCACA
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
25 8 0.14
26 22 0.38
27 15 0.26
28 13 0.22
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.59
Consensus pattern (26 bp):
TATTATTTATTTAAATTTGATTTACA
Found at i:61610772 original size:10 final size:10
Alignment explanation
Indices: 61610757--61610789 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
61610747 TTTCCCTCAA
61610757 TTCTCTCTCT
1 TTCTCTCTCT
61610767 TTCTCTCTCT
1 TTCTCTCTCT
*
61610777 CTCTCTCTCT
1 TTCTCTCTCT
61610787 TTC
1 TTC
61610790 CATATTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (10 bp):
TTCTCTCTCT
Found at i:61611161 original size:22 final size:19
Alignment explanation
Indices: 61611108--61611162 Score: 67
Period size: 18 Copynumber: 2.8 Consensus size: 19
61611098 ATTTAAATTA
61611108 AAAATAAATAA-TATTTTT
1 AAAATAAATAATTATTTTT
*
61611126 AAAATCAATAATTATTTTT
1 AAAATAAATAATTATTTTT
61611145 ACCAAATAATATAATTAT
1 A--AAATAA-ATAATTAT
61611163 ATTCACTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 10 0.32
19 8 0.26
21 5 0.16
22 8 0.26
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATAAATAATTATTTTT
Found at i:61614044 original size:1 final size:1
Alignment explanation
Indices: 61614038--61614064 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
61614028 CCTAAAGAGG
61614038 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
61614065 AAAAAAAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:61616747 original size:6 final size:6
Alignment explanation
Indices: 61616736--61616777 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
61616726 AATTATTTGG
* * *
61616736 AAATGA AAATGA AAATGG AAACGA AAATAA AAATGA AAATGA
1 AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA
61616778 TCCATTTACA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.67, C:0.02, G:0.17, T:0.14
Consensus pattern (6 bp):
AAATGA
Found at i:61616756 original size:18 final size:18
Alignment explanation
Indices: 61616733--61616777 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
61616723 TGAAATTATT
*
61616733 TGGAAATGAAAATGAAAA
1 TGGAAATGAAAATAAAAA
*
61616751 TGGAAACGAAAATAAAAA
1 TGGAAATGAAAATAAAAA
*
61616769 TGAAAATGA
1 TGGAAATGA
61616778 TCCATTTACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.62, C:0.02, G:0.20, T:0.16
Consensus pattern (18 bp):
TGGAAATGAAAATAAAAA
Found at i:61618034 original size:30 final size:30
Alignment explanation
Indices: 61617986--61618055 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
61617976 GTTTAGCCAC
*
61617986 AAAAACTAGGGAAGATTCTAATTGAGCCTTG
1 AAAAACTAGAG-AGATTCTAATTGAGCCTTG
* *
61618017 AAAAGCTAGAGAGATTCTAATTTAGCCTTG
1 AAAAACTAGAGAGATTCTAATTGAGCCTTG
61618047 AAAAACTAG
1 AAAAACTAG
61618056 GGGGAATGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
30 26 0.74
31 9 0.26
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (30 bp):
AAAAACTAGAGAGATTCTAATTGAGCCTTG
Found at i:61622854 original size:30 final size:30
Alignment explanation
Indices: 61622805--61622879 Score: 109
Period size: 30 Copynumber: 2.6 Consensus size: 30
61622795 TAGTTTTTAT
*
61622805 GGCTTAACTAGAA--CTCTAGTTTTTACAA
1 GGCTTAACTATAACCCTCTAGTTTTTACAA
61622833 GGCTTAACTATAACCCTCTAGTTTTTACAA
1 GGCTTAACTATAACCCTCTAGTTTTTACAA
* *
61622863 GGCTCAATTATAACCCT
1 GGCTTAACTATAACCCT
61622880 TCCCAAATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 12 0.29
30 30 0.71
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (30 bp):
GGCTTAACTATAACCCTCTAGTTTTTACAA
Found at i:61632923 original size:21 final size:21
Alignment explanation
Indices: 61632899--61632945 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
61632889 AAGGCATAAG
*
61632899 AACATGAAACTG-CCATGTTGC
1 AACATGAAA-TGTCAATGTTGC
*
61632920 AACATGAAATGTCAATGTTTC
1 AACATGAAATGTCAATGTTGC
61632941 AACAT
1 AACAT
61632946 AGTGAGTAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (21 bp):
AACATGAAATGTCAATGTTGC
Found at i:61633062 original size:24 final size:24
Alignment explanation
Indices: 61633030--61633077 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
61633020 TTTAATGAGG
* *
61633030 GAATTAGGCTAGTGGACGTCAACT
1 GAATTAGGCCAATGGACGTCAACT
61633054 GAATTAGGCCAATGGACGTCAACT
1 GAATTAGGCCAATGGACGTCAACT
61633078 AACCCTAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (24 bp):
GAATTAGGCCAATGGACGTCAACT
Found at i:61635824 original size:29 final size:29
Alignment explanation
Indices: 61635791--61635848 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
61635781 GTGACGAGAT
61635791 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
61635820 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
61635849 CGACACTGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:61635863 original size:29 final size:29
Alignment explanation
Indices: 61635794--61635855 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
61635784 ACGAGATTGG
* *
61635794 CACTAAGTGTGCATGCTGGAAATATATGG
1 CACTAAGTGTGCATGCTGGAAATATACGA
61635823 CACTAAGTGTGCATGCTGGAAATATACGA
1 CACTAAGTGTGCATGCTGGAAATATACGA
61635852 CACT
1 CACT
61635856 GGGTGTGCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (29 bp):
CACTAAGTGTGCATGCTGGAAATATACGA
Found at i:61640443 original size:49 final size:48
Alignment explanation
Indices: 61640371--61640548 Score: 187
Period size: 51 Copynumber: 3.6 Consensus size: 48
61640361 CTGATACGCA
*
61640371 TAGTAGCCTGCACTTAGTACTACACATGCGATCAACAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGATCAACAAT-TGGTACACG
* * * *
61640420 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC-ATTGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGATC-AA--CAATTG-GTACACG
* * * *
61640471 TAGTAGCCCGCACTTAGTACTACACATGCGACTTAACAGTATGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-TCAACAAT-TGGTACACG
* *
61640521 TAGTAGCCTACACTTAGTACTATACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
61640549 TGTATTCACA
Statistics
Matches: 106, Mismatches: 16, Indels: 13
0.79 0.12 0.10
Matches are distributed among these distances:
49 32 0.30
50 33 0.31
51 39 0.37
52 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGATCAACAATTGGTACACG
Found at i:61656574 original size:15 final size:16
Alignment explanation
Indices: 61656535--61656574 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
61656525 CTTTTTCCCC
61656535 TCTTCTTCGTTTTTCT
1 TCTTCTTCGTTTTTCT
*
61656551 TCTCCTTCG-TTTTCT
1 TCTTCTTCGTTTTTCT
*
61656566 TCTTTTTCG
1 TCTTCTTCG
61656575 ATTAGTTGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.00, C:0.28, G:0.07, T:0.65
Consensus pattern (16 bp):
TCTTCTTCGTTTTTCT
Found at i:61657072 original size:13 final size:13
Alignment explanation
Indices: 61657054--61657093 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
61657044 TGGGCCGTGT
61657054 GGGTGAACCACAC
1 GGGTGAACCACAC
61657067 GGGTGAACCACAC
1 GGGTGAACCACAC
*
61657080 GGGTGAACCGCAC
1 GGGTGAACCACAC
61657093 G
1 G
61657094 AGCGTGTGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.35, T:0.07
Consensus pattern (13 bp):
GGGTGAACCACAC
Found at i:61661722 original size:75 final size:75
Alignment explanation
Indices: 61661599--61661745 Score: 258
Period size: 75 Copynumber: 2.0 Consensus size: 75
61661589 CTTAAACCTC
* *
61661599 TTCTTCAAATGCATCAGGTTCAACATCATTCAAAGAGATATTGGGATTAGGATTTTCTGAGGAAT
1 TTCTTCAAATACATCAGGTTCAACATCATTCAAAGAGATATTGGGATTAGGATTTTCTGAGAAAT
*
61661664 CTATATCCTT
66 CCATATCCTT
*
61661674 TTCTTCAAATACATCAGGTTCAACATCATTCAAAGAGATATTGGGATTAGGATTTTTTGAGAAAT
1 TTCTTCAAATACATCAGGTTCAACATCATTCAAAGAGATATTGGGATTAGGATTTTCTGAGAAAT
61661739 CCATATC
66 CCATATC
61661746 TTACGTTGTA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (75 bp):
TTCTTCAAATACATCAGGTTCAACATCATTCAAAGAGATATTGGGATTAGGATTTTCTGAGAAAT
CCATATCCTT
Found at i:61669700 original size:51 final size:51
Alignment explanation
Indices: 61669645--61669744 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
61669635 CTACCTTATA
* *
61669645 ACATGTAACACATCC-ATAATGAACTCGGACCTCTGAACGAGCTCGGATGTT
1 ACATGTAACACATCCAAT-ATGAACTCGGACCACTCAACGAGCTCGGATGTT
* * * *
61669696 ACATGTATCGCATCCAATATGAACTCGGACCACTCAATGAGCTTGGATG
1 ACATGTAACACATCCAATATGAACTCGGACCACTCAACGAGCTCGGATG
61669745 CTCGCATCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 40 0.95
52 2 0.05
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (51 bp):
ACATGTAACACATCCAATATGAACTCGGACCACTCAACGAGCTCGGATGTT
Found at i:61669788 original size:43 final size:43
Alignment explanation
Indices: 61669703--61669788 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
61669693 GTTACATGTA
* * * **
61669703 TCGCATCCAATATGAACTCGGACCACTCAATGAGCTTGGATGC
1 TCGCATCCAATATGAAATCAGACCACTCAACGAGCTCAGATGC
61669746 TCGCATCC-ATAATGAAATCAGACCACTCAACGAGCTCAGATGC
1 TCGCATCCAAT-ATGAAATCAGACCACTCAACGAGCTCAGATGC
61669789 CACATATCTC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 2 0.05
43 35 0.95
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (43 bp):
TCGCATCCAATATGAAATCAGACCACTCAACGAGCTCAGATGC
Found at i:61674947 original size:38 final size:40
Alignment explanation
Indices: 61674834--61675018 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
61674824 TTCGAATGAT
* * *
61674834 ATCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
**
61674874 ATCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
61674914 TTCCGGGCTAAG-CCCGAAGGCA-TGGTGCGAGTTATTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
61674952 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCCAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
61674993 A-CCGGGCCATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
61675019 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 24 0.20
39 19 0.15
40 70 0.57
41 10 0.08
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:61685698 original size:2 final size:2
Alignment explanation
Indices: 61685693--61685729 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
61685683 TATATATATA
61685693 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
61685730 TATGACTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:61688814 original size:27 final size:26
Alignment explanation
Indices: 61688777--61688888 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
61688767 AGCATAGCTG
* *
61688777 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
61688803 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
61688831 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
61688858 CCAGATCAGATAATCATGGCATAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
61688885 CCAG
1 CCAG
61688889 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
26 7 0.09
27 53 0.69
28 17 0.22
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:61688868 original size:54 final size:54
Alignment explanation
Indices: 61688777--61688888 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
61688767 AGCATAGCTG
* *
61688777 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCA
* *
61688831 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCATGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCA
61688885 CCAG
1 CCAG
61688889 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCA
Found at i:61690306 original size:25 final size:25
Alignment explanation
Indices: 61690278--61690329 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
61690268 ACACTGCCTT
61690278 CCCTAATCAGCTCCTAAAACTTCTC
1 CCCTAATCAGCTCCTAAAACTTCTC
* *
61690303 CCCTTATCAGCTCCTAAATCTTCTC
1 CCCTAATCAGCTCCTAAAACTTCTC
61690328 CC
1 CC
61690330 TTATCCCCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.23, C:0.42, G:0.04, T:0.31
Consensus pattern (25 bp):
CCCTAATCAGCTCCTAAAACTTCTC
Found at i:61690340 original size:24 final size:25
Alignment explanation
Indices: 61690278--61690341 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
61690268 ACACTGCCTT
* *
61690278 CCCTAATCAGCTCCTAAAACTTCTC
1 CCCTTATCACCTCCTAAAACTTCTC
* *
61690303 CCCTTATCAGCTCCTAAATCTTCT-
1 CCCTTATCACCTCCTAAAACTTCTC
*
61690327 CCCTTATCCCCTCCT
1 CCCTTATCACCTCCT
61690342 TACTCAATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
24 13 0.37
25 22 0.63
ACGTcount: A:0.20, C:0.44, G:0.03, T:0.33
Consensus pattern (25 bp):
CCCTTATCACCTCCTAAAACTTCTC
Found at i:61696632 original size:27 final size:26
Alignment explanation
Indices: 61696597--61696705 Score: 137
Period size: 27 Copynumber: 4.1 Consensus size: 26
61696587 AGCATAGCTG
* *
61696597 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
61696623 CCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
61696651 CCAGAACAGATAATGTGGCAGAGCCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* * *
61696677 CCAGATCAGATAATTATGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
61696704 CC
1 CC
61696706 GGGACGCTTC
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 28 0.38
27 31 0.42
28 14 0.19
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:61698116 original size:25 final size:24
Alignment explanation
Indices: 61698081--61698139 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 24
61698071 CAACACTGCC
* *
61698081 CTCCCTAATCATCTCCTAAAACTT
1 CTCCCTTATCAGCTCCTAAAACTT
*
61698105 CTCCCCTTATCAGCTCCTAAATCTT
1 CT-CCCTTATCAGCTCCTAAAACTT
61698130 CTCCCTTATC
1 CTCCCTTATC
61698140 CCCTCCTTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 10 0.32
25 21 0.68
ACGTcount: A:0.22, C:0.41, G:0.02, T:0.36
Consensus pattern (24 bp):
CTCCCTTATCAGCTCCTAAAACTT
Found at i:61698145 original size:24 final size:25
Alignment explanation
Indices: 61698083--61698146 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
61698073 ACACTGCCCT
* *
61698083 CCCTAATCATCTCCTAAAACTTCTC
1 CCCTTATCACCTCCTAAAACTTCTC
* *
61698108 CCCTTATCAGCTCCTAAATCTTCT-
1 CCCTTATCACCTCCTAAAACTTCTC
*
61698132 CCCTTATCCCCTCCT
1 CCCTTATCACCTCCT
61698147 TACTCAATCA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 13 0.38
25 21 0.62
ACGTcount: A:0.20, C:0.44, G:0.02, T:0.34
Consensus pattern (25 bp):
CCCTTATCACCTCCTAAAACTTCTC
Found at i:61708208 original size:43 final size:43
Alignment explanation
Indices: 61708161--61708246 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
61708151 AGGGTAAATC
* * *
61708161 CAACAACCCATGTTTATCTTTTCCTCTTTTTAAATTCCTTTTT
1 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCCTTTTT
*
61708204 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCCTTTTT
61708247 TTCTAGGATA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.23, C:0.26, G:0.02, T:0.49
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCCTTTTT
Found at i:61713881 original size:40 final size:40
Alignment explanation
Indices: 61713689--61713874 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
61713679 TCGAATGATG
* * *
61713689 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
*
61713729 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
61713769 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61713809 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
61713850 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61713875 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.91
41 11 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61726059 original size:40 final size:40
Alignment explanation
Indices: 61725980--61726081 Score: 102
Period size: 40 Copynumber: 2.5 Consensus size: 40
61725970 TTCGAATGAT
* *
61725980 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAA
61726020 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAA
1 ATCCGGACTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAA
* ** *
61726060 ATTCGGGTTGAGTCCCGAAGGC
1 ATCCGGACTAAGTCCCGAAGGC
61726082 ATTCGTGCGA
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
39 1 0.02
40 46 0.88
41 5 0.10
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAA
Found at i:61730526 original size:50 final size:50
Alignment explanation
Indices: 61730458--61730730 Score: 287
Period size: 50 Copynumber: 5.6 Consensus size: 50
61730448 ACATCAAAGT
* *
61730458 CGATGCCATATCCCAGACATGATCTTACACTGACTCTCATATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGC
* * * * *
61730508 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATTTGTCGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGC
* * * *
61730558 CGATGCCATGTCCCAGACATGGTCTTACATTGA----CACATA-CCAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGC
* * * *
61730603 TGATGCCATGTCCTAGACATGGTCTTACACT-AGCTTTCATATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCGAGGC
* * * *
61730653 CGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTC--GTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCGAGGC
61730701 CGATGCCATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
61730731 AGCACACATG
Statistics
Matches: 189, Mismatches: 28, Indels: 15
0.81 0.12 0.06
Matches are distributed among these distances:
44 1 0.01
45 32 0.17
46 3 0.02
47 10 0.05
48 27 0.14
49 4 0.02
50 112 0.59
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGC
Found at i:61730630 original size:95 final size:95
Alignment explanation
Indices: 61730411--61730733 Score: 303
Period size: 95 Copynumber: 3.3 Consensus size: 95
61730401 CTAAGATGCC
* * * * * * * * *
61730411 GATGCCATGTCCTGGACATGGTTTTACACTTGCTCACACA--TCAAAGTCGATGCCATATCCCAG
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCGATGCCATGTCCCAG
* * * * * *
61730474 ACATGATCTTACACTGACTCTCATATATCGAGGCC
66 ACATGGTCTTACATTGA----CACATA-CCAAGCT
* * * *
61730509 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATTTGTCGATGCCGATGCCATGTCCCAG
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCGATGCCATGTCCCAG
61730574 ACATGGTCTTACATTGACACATACCAAGCT
66 ACATGGTCTTACATTGACACATACCAAGCT
*
61730604 GATGCCATGTCCTAGACATGGTCTTACACTAGCTTTCATATCTCGAGGCCGATGCCATGTCCCAG
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCGATGCCATGTCCCAG
* * * * *
61730669 ACATGGTCTTACACTAGCTCTCGT-CTCAATGCC
66 ACATGGTCTTACA-TTG-ACACATAC-CAA-GCT
*
61730702 GATGCCATGTCCCAGACAT-GTCTTACACTAGC
1 GATGCCATGTCCTAGACATGGTCTTACACTAGC
61730734 ACACATGTCA
Statistics
Matches: 192, Mismatches: 27, Indels: 13
0.83 0.12 0.06
Matches are distributed among these distances:
95 77 0.40
96 8 0.04
97 19 0.10
98 54 0.28
100 34 0.18
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (95 bp):
GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCGATGCCATGTCCCAG
ACATGGTCTTACATTGACACATACCAAGCT
Found at i:61730671 original size:145 final size:144
Alignment explanation
Indices: 61730405--61730739 Score: 437
Period size: 145 Copynumber: 2.3 Consensus size: 144
61730395 CATAGGCTAA
** *
61730405 GATGCCGATGCCATGTCCTGGACATGGTTTTACACTTGCTCACACATCAAAGTCGATGCCATATC
1 GATGCCGATGCCATGTCCCAGACATGGTCTTACACTTG--CACACATCAAAGTCGATGCCATATC
*
61730470 CCAGACATGATCTTACACTGACTCTCATATATCGAGGCCGATGCCATGTCCTAGACATGGTCTTA
64 CCAGACATGATCTTACACTGACTCTCATATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTA
* * *
61730535 CACTGGCTCTCATTTGTC
129 CACTAGCTCTC--GTCTC
* *
61730553 GATGCCGATGCCATGTCCCAGACATGGTCTTACA-TTG-ACACATACCAAG-CTGATGCCATGTC
1 GATGCCGATGCCATGTCCCAGACATGGTCTTACACTTGCACACAT-CAAAGTC-GATGCCATATC
* * * *
61730615 CTAGACATGGTCTTACACT-AGCTTTCATATCTCGAGGCCGATGCCATGTCCCAGACATGGTCTT
64 CCAGACATGATCTTACACTGA-CTCTCATATATCGAGGCCGATGCCATGTCCCAGACATGGTCTT
61730679 ACACTAGCTCTCGTCTC
128 ACACTAGCTCTCGTCTC
* *
61730696 AATGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCACACAT
1 GATGCCGATGCCATGTCCCAGACATGGTCTTACACTTGCACACAT
61730740 GTCACCTAAA
Statistics
Matches: 167, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
142 8 0.05
143 29 0.17
144 14 0.08
145 82 0.49
147 3 0.02
148 31 0.19
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (144 bp):
GATGCCGATGCCATGTCCCAGACATGGTCTTACACTTGCACACATCAAAGTCGATGCCATATCCC
AGACATGATCTTACACTGACTCTCATATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACA
CTAGCTCTCGTCTC
Found at i:61736568 original size:71 final size:71
Alignment explanation
Indices: 61736482--61736645 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61736472 CGATTTGTCT
61736482 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61736547 CTTTCA
66 CTTTCA
61736553 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61736618 CTTTCA
66 CTTTCA
61736624 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61736646 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61744137 original size:70 final size:71
Alignment explanation
Indices: 61744052--61744214 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
61744042 CGATTTGTCT
61744052 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTA-
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61744116 CTTTCA
66 CTTTCA
61744122 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61744187 CTTTCA
66 CTTTCA
61744193 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61744215 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 64 0.70
71 28 0.30
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61744252 original size:71 final size:69
Alignment explanation
Indices: 61744052--61744248 Score: 265
Period size: 70 Copynumber: 2.8 Consensus size: 69
61744042 CGATTTGTCT
* * *
61744052 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
61744117 TTTCA
65 TTTCA
* * *
61744122 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTA-
61744187 CTTTCA
64 CTTTCA
* *
61744193 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
61744249 TACAGGGTGC
Statistics
Matches: 120, Mismatches: 5, Indels: 6
0.92 0.04 0.05
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 65 0.54
71 31 0.26
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (69 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTACT
TTCA
Found at i:61749624 original size:48 final size:49
Alignment explanation
Indices: 61749564--61749685 Score: 135
Period size: 49 Copynumber: 2.5 Consensus size: 49
61749554 CCATTGTTAA
*
61749564 GGCATGCA-AGTTGCTAACTAG-TTGG-GAGAATAAGATGGGCCACT-GTAG
1 GGCATG-ATAGTTGCTAACCAGATTGGTGAGAAT--GATGGGCCACTGGTAG
* * *
61749612 GGCATGTTAGTTGCTAACCAGATTGGTGTGAATGATGGGTCACTGGTAG
1 GGCATGATAGTTGCTAACCAGATTGGTGAGAATGATGGGCCACTGGTAG
* *
61749661 GGTATGATAGTTACTAACCAGATTG
1 GGCATGATAGTTGCTAACCAGATTG
61749686 ACATCAGTGC
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
48 28 0.44
49 30 0.48
50 5 0.08
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (49 bp):
GGCATGATAGTTGCTAACCAGATTGGTGAGAATGATGGGCCACTGGTAG
Found at i:61751022 original size:20 final size:18
Alignment explanation
Indices: 61750974--61751023 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
61750964 ACAAGAATAT
61750974 TATTAAATTAA-ATTTAA
1 TATTAAATTAATATTTAA
61750991 TATTAAGA-TAATCATTTTAA
1 TATTAA-ATTAAT-A-TTTAA
61751011 TATTAAATTAATA
1 TATTAAATTAATA
61751024 AAATAGTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 9 0.32
18 1 0.04
19 3 0.11
20 15 0.54
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (18 bp):
TATTAAATTAATATTTAA
Found at i:61754852 original size:5 final size:5
Alignment explanation
Indices: 61754842--61754868 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
61754832 TATGCCAACC
61754842 ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA AT
61754869 TTTTTTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:61759545 original size:27 final size:28
Alignment explanation
Indices: 61759515--61759584 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
61759505 ATAGTGAATC
*
61759515 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
61759542 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
61759570 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61759585 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:61759656 original size:42 final size:42
Alignment explanation
Indices: 61759592--61759698 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
61759582 GCTGTACAAT
* *
61759592 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
61759634 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
61759676 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
61759699 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:61774359 original size:16 final size:16
Alignment explanation
Indices: 61774298--61774360 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 16
61774288 ATTGGCAAAA
*
61774298 GCCGAAATGCCGAAAT
1 GCCGAAAAGCCGAAAT
*
61774314 GCCGAAAAGCCAAAAT
1 GCCGAAAAGCCGAAAT
* * **
61774330 GTCTAAAAGTTGAAAT
1 GCCGAAAAGCCGAAAT
*
61774346 GCCGAAAAGCTGAAA
1 GCCGAAAAGCCGAAA
61774361 GTTTGGCTAC
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.14
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:61774626 original size:29 final size:29
Alignment explanation
Indices: 61774584--61774685 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 29
61774574 TGAATGTGGC
*
61774584 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
61774613 TGGGCCTAATGGGCCATATACAA-GTGATT
1 TGGGCCTAATGGGCCATATA-AATGTGATT
* * * *
61774642 TGGGCCTAATGGGTCATATGAATATGA-C
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
61774670 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
61774686 AATACAGGTA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 16 0.25
29 46 0.72
30 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:61774997 original size:27 final size:27
Alignment explanation
Indices: 61774967--61775022 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
61774957 AAAACCATAT
* * *
61774967 TAAAGGGAAAAATTACCGAAATACCCC
1 TAAAGGCAAAAATGACCAAAATACCCC
*
61774994 TAAAGGCAGAAATGACCAAAATACCCC
1 TAAAGGCAAAAATGACCAAAATACCCC
61775021 TA
1 TA
61775023 GATGTTGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.48, C:0.23, G:0.14, T:0.14
Consensus pattern (27 bp):
TAAAGGCAAAAATGACCAAAATACCCC
Found at i:61785333 original size:66 final size:68
Alignment explanation
Indices: 61785257--61785443 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
61785247 TAGTACCACT
*
61785257 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
61785319 CACG
65 CACG
61785323 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
61785388 ATCACG
63 ATCACG
61785394 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
61785444 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:61785368 original size:71 final size:71
Alignment explanation
Indices: 61785280--61785443 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61785270 CGATTTGTCT
61785280 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61785345 CTTTCA
66 CTTTCA
61785351 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61785416 CTTTCA
66 CTTTCA
61785422 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61785444 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61785481 original size:71 final size:70
Alignment explanation
Indices: 61785280--61785477 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
61785270 CGATTTGTCT
* * *
61785280 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
61785345 CTTTCA
65 CTTTCA
* * *
61785351 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
61785416 CTTTCA
65 CTTTCA
* *
61785422 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
61785478 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:61792899 original size:66 final size:68
Alignment explanation
Indices: 61792823--61793009 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
61792813 TAGTACCACT
*
61792823 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
61792885 CACG
65 CACG
61792889 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
61792954 ATCACG
63 ATCACG
61792960 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
61793010 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:61792934 original size:71 final size:71
Alignment explanation
Indices: 61792846--61793009 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61792836 CGATTTGTCT
61792846 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61792911 CTTTCA
66 CTTTCA
61792917 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61792982 CTTTCA
66 CTTTCA
61792988 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61793010 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61793047 original size:71 final size:70
Alignment explanation
Indices: 61792846--61793043 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
61792836 CGATTTGTCT
* * *
61792846 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
61792911 CTTTCA
65 CTTTCA
* * *
61792917 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
61792982 CTTTCA
65 CTTTCA
* *
61792988 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
61793044 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:61797446 original size:24 final size:27
Alignment explanation
Indices: 61797400--61797448 Score: 77
Period size: 24 Copynumber: 1.9 Consensus size: 27
61797390 CGAGGTAAGT
61797400 TTGTATGTTAAATAAGCTTTAATATAG
1 TTGTATGTTAAATAAGCTTTAATATAG
61797427 TTGTAT-TTAAAT-A-CTTTAATAT
1 TTGTATGTTAAATAAGCTTTAATAT
61797449 TTCATGAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.41
25 1 0.05
26 6 0.27
27 6 0.27
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (27 bp):
TTGTATGTTAAATAAGCTTTAATATAG
Found at i:61798523 original size:15 final size:17
Alignment explanation
Indices: 61798493--61798524 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
61798483 TTGATACTTG
61798493 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
61798510 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
61798525 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:61799864 original size:13 final size:14
Alignment explanation
Indices: 61799828--61799870 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
61799818 CCTTTTTGTC
*
61799828 TTTA-TTATTTTTA
1 TTTATTTATTCTTA
61799841 CTTTATTTATTCTTA
1 -TTTATTTATTCTTA
61799856 TTT-TTTATTCTTA
1 TTTATTTATTCTTA
61799869 TT
1 TT
61799871 AACTTTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 12 0.44
14 7 0.26
15 8 0.30
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATTTATTCTTA
Found at i:61799870 original size:37 final size:36
Alignment explanation
Indices: 61799829--61799939 Score: 86
Period size: 40 Copynumber: 3.0 Consensus size: 36
61799819 CTTTTTGTCT
61799829 TTATTATTTTTACTTTATTTATTCTTATTTTTTATTC
1 TTATTATTTTTACTTTATTTATT-TTATTTTTTATTC
** *
61799866 TTATTAACTTTA-TTATAATTGTTATTATTCTTTTTT-TTC
1 TTATTATTTTTACTT-T-A-T-TTATT-TTATTTTTTATTC
*
61799905 TTATTGTTTATTAC--TATTTATTTTATTTTCTTATT
1 TTATTATTT-TTACTTTATTTATTTTATTTT-TTATT
61799940 ATTCTTCTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
34 6 0.10
35 7 0.12
36 5 0.09
37 12 0.21
38 2 0.03
39 10 0.17
40 16 0.28
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (36 bp):
TTATTATTTTTACTTTATTTATTTTATTTTTTATTC
Found at i:61801539 original size:6 final size:6
Alignment explanation
Indices: 61801528--61801572 Score: 56
Period size: 6 Copynumber: 7.2 Consensus size: 6
61801518 TTTTTTCATG
61801528 TTTATT TTTATT TTTATT TTTATT TTGGT-TAT TTTATT TTTATT T
1 TTTATT TTTATT TTTATT TTTATT TT--TAT-T TTTATT TTTATT T
61801573 CTTAGACTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
6 29 0.83
7 2 0.06
8 4 0.11
ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:61801547 original size:26 final size:26
Alignment explanation
Indices: 61801512--61801572 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
61801502 ATCTATTTTC
* *
61801512 TTTATTTTTTTTCATGTTTATTTTTATT
1 TTTA-TTTTTATCATGGTTA-TTTTATT
**
61801540 TTTATTTTTATTTTGGTTATTTTATT
1 TTTATTTTTATCATGGTTATTTTATT
61801566 TTTATTT
1 TTTATTT
61801573 CTTAGACTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.48
27 11 0.38
28 4 0.14
ACGTcount: A:0.15, C:0.02, G:0.05, T:0.79
Consensus pattern (26 bp):
TTTATTTTTATCATGGTTATTTTATT
Found at i:61803170 original size:43 final size:42
Alignment explanation
Indices: 61803041--61803203 Score: 141
Period size: 43 Copynumber: 3.8 Consensus size: 42
61803031 AGCTCGTACA
* * *
61803041 ATGCC-ATATCCCAGATATGGTCTTACATGTTAT-CACATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCCA-ATA-CG
* ** * * * *
61803083 ATGCCACTATCGTAGACAAGGTCTTACACGAAATCGATTAACG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCCAAT-ACG
*
61803126 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATACG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATC-CAATACG
* * * *
61803169 ATGTCAATGTTCCAGACATGGTCTTACATGTAATC
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATC
61803204 ACATCTCGAT
Statistics
Matches: 96, Mismatches: 21, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 5 0.05
43 87 0.91
44 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGCCAATATCCCAGACATGGTCTTACACGTAATCCAATACG
Found at i:61815679 original size:40 final size:41
Alignment explanation
Indices: 61815630--61815802 Score: 185
Period size: 40 Copynumber: 4.3 Consensus size: 41
61815620 TCTTCGGAAT
* *
61815630 TTAG-CCGGATATAACT-ACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACTAACTAGCACAAATGCCTTCGGGTC
* *** * *
61815669 TTAACCCGGAT-TTGGTAACTTGCACAAATGCCTTTGGGTC
1 TTAGCCCGGATATAACTAACTAGCACAAATGCCTTCGGGTC
* *
61815709 TTAGCCCGGATATAAC-AACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACTAACTAGCACAAATGCCTTCGGGTC
* * *
61815749 TTAGCCCGGATATAA-TCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACTAACTAGCACAAATGCCTTCGGGTC
*
61815789 TTAGCCCGGGTATA
1 TTAGCCCGGATATA
61815803 TTCAAATGTT
Statistics
Matches: 109, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 5 0.05
40 103 0.94
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (41 bp):
TTAGCCCGGATATAACTAACTAGCACAAATGCCTTCGGGTC
Found at i:61815778 original size:80 final size:80
Alignment explanation
Indices: 61815621--61815802 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
61815611 AAACGAGTTT
* * * * **
61815621 CTTCGGAATTTAG-CCGGATATAACTACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
*
61815685 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* * ** *
61815700 CTTTGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAA
* *
61815764 TCACTAGCATAAATGC
65 TAACTAGCACAAATGC
*
61815780 CTTCGGGACTTAGCCCGGGTATA
1 CTTCGGGACTTAGCCCGGATATA
61815803 TTCAAATGTT
Statistics
Matches: 84, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 9 0.11
80 73 0.87
81 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:61821658 original size:28 final size:28
Alignment explanation
Indices: 61821626--61821724 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
61821616 GCAATAAGCC
*
61821626 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
61821654 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
61821682 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
61821711 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61821725 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:61829319 original size:28 final size:28
Alignment explanation
Indices: 61829287--61829385 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
61829277 GCAATAAGCC
*
61829287 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
61829315 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
61829343 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
61829372 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61829386 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:61837259 original size:40 final size:40
Alignment explanation
Indices: 61837157--61837340 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
61837147 AAATTGAATG
* * * * * *
61837157 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
61837197 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
61837237 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
61837277 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
61837317 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
61837341 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 114 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:61837365 original size:80 final size:80
Alignment explanation
Indices: 61837197--61837385 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
61837187 GCTGGAAATT
* * *
61837197 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
61837262 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
61837277 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
61837340 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
61837357 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
61837386 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Done.