Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 212 of 378
Found at i:62883261 original size:40 final size:40
Alignment explanation
Indices: 62883187--62883362 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
62883177 GAGTCACGTA
** *
62883187 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
62883226 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* * *
62883266 CCTTCGGGTCTTAACCCGGATATAACAACTCGC-GAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* * * *
62883304 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
62883344 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
62883363 GTATCATTCA
Statistics
Matches: 116, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 32 0.28
39 16 0.14
40 68 0.59
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:62889687 original size:79 final size:81
Alignment explanation
Indices: 62889586--62889770 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
62889576 ACGACTCGCT
** * *
62889586 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
62889649 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
62889666 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
62889730 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
62889746 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62889771 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:62889770 original size:40 final size:39
Alignment explanation
Indices: 62889579--62889770 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
62889569 GGATATAACG
* ** * *
62889579 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
62889619 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
62889659 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
62889698 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
62889738 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
62889771 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:62895429 original size:39 final size:40
Alignment explanation
Indices: 62895375--62895551 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
62895365 GAGTCACGTA
* *
62895375 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAACAACTAGCACAATTG
* ** * *
62895414 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTT
1 CCTTCGGGTCTTAACCCGGATATAACAACTAGCACAATTG
*
62895454 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAACAACTAGCAC-AATTG
* * *
62895494 CCTTCGGGTCTTAGCCCAGATATAATC-ACTAGCA-AAATG
1 CCTTCGGGTCTTAACCCGGATATAA-CAACTAGCACAATTG
* *
62895533 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
62895552 GTATCATTCA
Statistics
Matches: 116, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 3 0.03
39 31 0.27
40 79 0.68
41 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAACAACTAGCACAATTG
Found at i:62898435 original size:34 final size:33
Alignment explanation
Indices: 62898353--62898446 Score: 93
Period size: 34 Copynumber: 2.8 Consensus size: 33
62898343 TGCATATTGC
* *
62898353 ACTGATTTTGTAATGGGCGTAGGCCC-TACTGAT
1 ACTGATTCTGAAATGGGC-TAGGCCCATACTGAT
* *
62898386 ACTG-TTACTGGAATGGGCTCAGGCCCATACTGTT
1 ACTGATT-CTGAAATGGGCT-AGGCCCATACTGAT
*
62898420 TCTGATTCTGAAATGGGCTAAGGCCCA
1 ACTGATTCTGAAATGGGCT-AGGCCCA
62898447 AATTTTGTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
32 3 0.06
33 19 0.37
34 27 0.53
35 2 0.04
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (33 bp):
ACTGATTCTGAAATGGGCTAGGCCCATACTGAT
Found at i:62901463 original size:28 final size:28
Alignment explanation
Indices: 62901394--62901494 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
62901384 GACAAGATTG
* * * *
62901394 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
62901424 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62901452 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
62901481 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
62901495 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:62909401 original size:28 final size:28
Alignment explanation
Indices: 62909332--62909432 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
62909322 GACAAGATTG
* * * *
62909332 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
62909362 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62909390 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
62909419 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
62909433 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:62915144 original size:27 final size:27
Alignment explanation
Indices: 62915089--62915204 Score: 112
Period size: 27 Copynumber: 4.3 Consensus size: 27
62915079 AGCATGACTG
** **
62915089 CCAGAACAGATA-TTGTGATAGAGTTA
1 CCAGAACAGATATTTGTGGCAGAGCCA
* *
62915115 CCAGATTCAGATA-ATGTGGCAGAGCCA
1 CCAGA-ACAGATATTTGTGGCAGAGCCA
62915142 CCAGAACAGATATTTGTGGC-GTAGCCA
1 CCAGAACAGATATTTGTGGCAG-AGCCA
* *
62915169 CTAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATATTTGTGGCAGAGCCA
62915197 CCAGAACA
1 CCAGAACA
62915205 CTTCCTCTAT
Statistics
Matches: 74, Mismatches: 11, Indels: 9
0.79 0.12 0.10
Matches are distributed among these distances:
26 12 0.16
27 38 0.51
28 24 0.32
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:62915186 original size:28 final size:28
Alignment explanation
Indices: 62915129--62915202 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
62915119 ATTCAGATAA
62915129 TGTGGCAG-AGCCACCAG-AACAGATATT
1 TGTGGC-GTAGCCACCAGAAACAGATATT
*
62915156 TGTGGCGTAGCCACTAGAAACAGATATT
1 TGTGGCGTAGCCACCAGAAACAGATATT
*
62915184 TGTGGCATAGCCACCAGAA
1 TGTGGCGTAGCCACCAGAA
62915203 CACTTCCTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.02
27 14 0.33
28 27 0.64
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.20
Consensus pattern (28 bp):
TGTGGCGTAGCCACCAGAAACAGATATT
Found at i:62918007 original size:12 final size:12
Alignment explanation
Indices: 62917992--62918070 Score: 58
Period size: 12 Copynumber: 6.4 Consensus size: 12
62917982 GAAAAATAAT
62917992 ATATAATAGATAA
1 ATATAATAGAT-A
62918005 TATAATAATAGATA
1 -AT-ATAATAGATA
62918019 ATATAATA-ATA
1 ATATAATAGATA
62918030 A-ATAAT--ATA
1 ATATAATAGATA
62918039 ATAATAGATAGAATA
1 AT-ATA-ATAG-ATA
* *
62918054 ATAAAATAAATA
1 ATATAATAGATA
62918066 ATATA
1 ATATA
62918071 GAAATATAGA
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
9 4 0.07
10 5 0.09
11 7 0.13
12 15 0.27
13 5 0.09
14 5 0.09
15 14 0.25
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (12 bp):
ATATAATAGATA
Found at i:62918014 original size:15 final size:15
Alignment explanation
Indices: 62917987--62918078 Score: 117
Period size: 15 Copynumber: 6.5 Consensus size: 15
62917977 AGATTGAAAA
62917987 ATAATAT-ATAATAG
1 ATAATATAATAATAG
62918001 ATAATATAATAATAG
1 ATAATATAATAATAG
*
62918016 ATAATATAATAATAA
1 ATAATATAATAATAG
62918031 ATAATATAATAATAG
1 ATAATATAATAATAG
62918046 ATAGA-ATAATAA-A-
1 ATA-ATATAATAATAG
62918059 ATAA-ATAAT-ATAG
1 ATAATATAATAATAG
62918072 A-AATATA
1 ATAATATA
62918079 GATTTATAAA
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
11 1 0.01
12 9 0.13
13 7 0.10
14 8 0.11
15 45 0.63
16 1 0.01
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (15 bp):
ATAATATAATAATAG
Found at i:62918035 original size:30 final size:30
Alignment explanation
Indices: 62917987--62918167 Score: 119
Period size: 30 Copynumber: 6.0 Consensus size: 30
62917977 AGATTGAAAA
*
62917987 ATAATAT-ATAATAGATAATATAATAATAG
1 ATAATATAATAATAAATAATATAATAATAG
62918016 ATAATATAATAATAAATAATATAATAATAG
1 ATAATATAATAATAAATAATATAATAATAG
62918046 ATAGA-ATAAT-A-AAATAA-ATAAT-ATAG
1 ATA-ATATAATAATAAATAATATAATAATAG
* * *
62918072 A-AATATAGATTTATAAATCGAAATATATTAATAT
1 ATAATATA-A-TAATAAAT---AATATAATAATAG
* * *
62918106 A-AATATAATAATATA-AATATTATTAATTAC
1 ATAATATAATAATAAATAATA-TAATAA-TAG
* *
62918136 TTAATATTAATAACAAATAATATTAATTAATA
1 ATAATA-TAATAATAAATAATA-TAA-TAATA
62918168 TTAATTGCTA
Statistics
Matches: 124, Mismatches: 10, Indels: 32
0.75 0.06 0.19
Matches are distributed among these distances:
24 1 0.01
25 4 0.03
26 6 0.05
27 6 0.05
28 11 0.09
29 18 0.15
30 31 0.25
31 5 0.04
32 15 0.12
33 14 0.11
34 13 0.10
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.36
Consensus pattern (30 bp):
ATAATATAATAATAAATAATATAATAATAG
Found at i:62918111 original size:14 final size:14
Alignment explanation
Indices: 62918092--62918132 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
62918082 TTATAAATCG
62918092 AAATATATTAATAT
1 AAATATATTAATAT
*
62918106 AAATATAATAATAT
1 AAATATATTAATAT
62918120 AAATATTATTAAT
1 AAATA-TATTAAT
62918133 TACTTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATATATTAATAT
Found at i:62922944 original size:29 final size:28
Alignment explanation
Indices: 62922912--62923014 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
62922902 GTGACGAGAT
* *
62922912 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
62922941 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
62922970 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
62922999 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
62923015 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:62932089 original size:27 final size:26
Alignment explanation
Indices: 62932048--62932133 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 26
62932038 AGCATGGCTG
*
62932048 CCAGAACAGATATTGT-GACAGAGTCA
1 CCAGAACAGATATTGTAG-CAGAGCCA
*
62932074 CCAGATATAGATATTGTAGCAGAGCCA
1 CCAGA-ACAGATATTGTAGCAGAGCCA
*
62932101 CCAGAACAGATATTTGTGGC-GAAGCCA
1 CCAGAACAGATA-TTGTAGCAG-AGCCA
62932128 CCAGAA
1 CCAGAA
62932134 ATAGATGTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
26 12 0.23
27 39 0.75
28 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTAGCAGAGCCA
Found at i:62932147 original size:28 final size:28
Alignment explanation
Indices: 62932048--62932161 Score: 94
Period size: 27 Copynumber: 4.2 Consensus size: 28
62932038 AGCATGGCTG
* * *
62932048 CCAG-AACAGATA-TTGTGACAGAGTCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
* * * *
62932074 CCAGATATAGATA-TTGTAGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
62932101 CCAG-AACAGATATTTGTGGCGA-AGCCA
1 CCAGAAACAGATATTTGTGGC-ATAGCCA
* * *
62932128 CCAGAAATAGATGTTTGTGGCATTGCCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
62932156 CCAGAA
1 CCAGAA
62932162 CGCTTCCTCC
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
26 10 0.14
27 37 0.51
28 25 0.35
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCATAGCCA
Found at i:62937860 original size:30 final size:30
Alignment explanation
Indices: 62937826--62937886 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
62937816 TCCTTAACTC
62937826 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
62937856 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
62937886 A
1 A
62937887 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:62940000 original size:39 final size:40
Alignment explanation
Indices: 62939854--62940070 Score: 185
Period size: 40 Copynumber: 5.5 Consensus size: 40
62939844 GAATCACGTA
* * * * * *
62939854 CCTTCGGAACTTA-ACCGGATATAATGACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATG
** * *
62939893 CCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATG
* * *
62939933 CCTTCGGGACTTAACCCGGGTTTA-TAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATG
* *
62939972 CCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATG
* * * * *
62940011 CCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCACAAA-G
1 CCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATG
62940051 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
62940071 CATCATTCGA
Statistics
Matches: 143, Mismatches: 27, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
38 15 0.10
39 49 0.34
40 67 0.47
41 12 0.08
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATG
Found at i:62950506 original size:31 final size:31
Alignment explanation
Indices: 62950465--62950528 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
62950455 CCTTTTCATA
*
62950465 TTTCACATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
62950496 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
62950527 TT
1 TT
62950529 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:62950634 original size:42 final size:42
Alignment explanation
Indices: 62950552--62950643 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
62950542 TGGCCCATAG
** *
62950552 GCCCATTTCAATATCACATATAATGTCAATGGAAGAATGCAA
1 GCCCATTTCAATATCACATATAATACCAATCGAAGAATGCAA
*
62950594 GCCCATTTCAATATCACATGA-AATACCAA-CGAATGTATGCAA
1 GCCCATTTCAATATCACAT-ATAATACCAATCGAA-GAATGCAA
*
62950636 ACCCATTT
1 GCCCATTT
62950644 GGGGAGGCTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
41 3 0.07
42 39 0.91
43 1 0.02
ACGTcount: A:0.39, C:0.23, G:0.12, T:0.26
Consensus pattern (42 bp):
GCCCATTTCAATATCACATATAATACCAATCGAAGAATGCAA
Found at i:62951856 original size:28 final size:28
Alignment explanation
Indices: 62951810--62951878 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
62951800 TTTAAAACCC
*
62951810 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
62951837 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
62951865 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
62951879 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:62953708 original size:19 final size:18
Alignment explanation
Indices: 62953671--62953714 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
62953661 ATACATACAG
62953671 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
62953688 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
62953707 TACTAATT
1 TAATAATT
62953715 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:62956137 original size:27 final size:27
Alignment explanation
Indices: 62956070--62956137 Score: 104
Period size: 26 Copynumber: 2.6 Consensus size: 27
62956060 TTTAAAACCC
*
62956070 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTC-GTAATTTTGCTCTT
62956097 TA-GGGTAATTTCGTAATTTTGCTCTT
1 TAGGGGTAATTTCGTAATTTTGCTCTT
62956123 TAGGGGTAATTTCGT
1 TAGGGGTAATTTCGT
62956138 GATCTACGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
26 20 0.53
27 18 0.47
ACGTcount: A:0.19, C:0.10, G:0.25, T:0.46
Consensus pattern (27 bp):
TAGGGGTAATTTCGTAATTTTGCTCTT
Found at i:62963620 original size:39 final size:39
Alignment explanation
Indices: 62963566--62963718 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
62963556 GAATGTTCGA
*
62963566 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
62963605 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
62963644 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
62963683 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
62963719 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:62963734 original size:40 final size:39
Alignment explanation
Indices: 62963567--62963748 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
62963557 AATGTTCGAG
* *
62963567 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
62963606 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
62963645 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
62963684 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
62963724 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
62963749 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:62979669 original size:11 final size:11
Alignment explanation
Indices: 62979653--62979677 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
62979643 TTATATATAC
62979653 TAATAAAATAA
1 TAATAAAATAA
62979664 TAATAAAATAA
1 TAATAAAATAA
62979675 TAA
1 TAA
62979678 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:62987927 original size:39 final size:39
Alignment explanation
Indices: 62987873--62988016 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
62987863 GAATGTTCGA
62987873 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
62987912 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
62987951 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
62987990 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
62988017 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:62987963 original size:78 final size:79
Alignment explanation
Indices: 62987874--62988056 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
62987864 AATGTTCGAG
62987874 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
62987938 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
62987952 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
62988017 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
62988031 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
62988057 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:62995993 original size:39 final size:39
Alignment explanation
Indices: 62995939--62996082 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
62995929 GAATGTTCGA
62995939 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
62995978 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
62996017 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
62996056 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
62996083 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:62996029 original size:78 final size:79
Alignment explanation
Indices: 62995940--62996122 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
62995930 AATGTTCGAG
62995940 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
62996004 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
62996018 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
62996083 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
62996097 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
62996123 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:62999971 original size:40 final size:40
Alignment explanation
Indices: 62999914--63000178 Score: 365
Period size: 40 Copynumber: 6.7 Consensus size: 40
62999904 CTAACGGGGT
* * * * *
62999914 TAAGTCCTGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
62999954 TAAGTCCCGAAGGCATTTGTGCGAGTTATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
62999994 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
63000034 TATGTCCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
63000074 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * * *
63000114 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* *
63000154 TAAGACCCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
63000179 GGTTATATCC
Statistics
Matches: 208, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 11 0.05
40 197 0.95
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:63011419 original size:40 final size:40
Alignment explanation
Indices: 63011362--63011706 Score: 507
Period size: 40 Copynumber: 8.7 Consensus size: 40
63011352 CTAATGGGGT
* * * * *
63011362 TAAGTCTCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
63011402 TAAGTCCCGAAGGCATTTGTGCGAGTTATTAATTCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
63011442 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
63011482 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
63011522 TAAGTCCCGAAGGCATTTGTCCGAGTTACTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
63011562 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
63011602 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
63011642 TAAGTCCCGAAGGCATTTGTGCTAGTGACT-ATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* *
63011682 TAAGACCCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
63011707 GGTTATATCC
Statistics
Matches: 283, Mismatches: 21, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 11 0.04
40 272 0.96
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:63026837 original size:40 final size:39
Alignment explanation
Indices: 63026792--63026955 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 39
63026782 CGGAATATAA
63026792 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
63026832 CCGGATA-AATCTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
* ** * *
63026869 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * *
63026909 CCGGATATAATTTC-CAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA--TCACTGCACAAATGCCTTCGGGTCTTAGC
63026948 CCGGATAT
1 CCGGATAT
63026956 CATTCAATTT
Statistics
Matches: 103, Mismatches: 16, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
37 29 0.28
38 3 0.03
39 18 0.17
40 51 0.50
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:63034724 original size:40 final size:40
Alignment explanation
Indices: 63034679--63034845 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
63034669 CGGAATATAA
63034679 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * *
63034719 CCGGATA-AATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
63034758 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63034798 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
63034838 CCGGATAT
1 CCGGATAT
63034846 CATTCAATTT
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.33
40 66 0.65
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63039414 original size:27 final size:28
Alignment explanation
Indices: 63039357--63039426 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
63039347 AAACTTGTAC
*
63039357 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
63039385 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
63039412 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63039427 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:63039437 original size:27 final size:27
Alignment explanation
Indices: 63039357--63039438 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
63039347 AAACTTGTAC
* * *
63039357 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
63039385 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
63039412 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
63039439 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:63047308 original size:27 final size:28
Alignment explanation
Indices: 63047251--63047320 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
63047241 AAACTTGTAC
*
63047251 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
63047279 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
63047306 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63047321 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:63047331 original size:27 final size:27
Alignment explanation
Indices: 63047251--63047332 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
63047241 AAACTTGTAC
* * *
63047251 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
63047279 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
63047306 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
63047333 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:63050530 original size:40 final size:40
Alignment explanation
Indices: 63050402--63050532 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
63050392 TATGCTGGAA
* * * *
63050402 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
63050442 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
63050482 ATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
63050522 ATTATATCCGG
1 ATTATATCCGG
63050533 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:63051906 original size:31 final size:31
Alignment explanation
Indices: 63051864--63051922 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
63051854 GGTCCGACAC
*
63051864 CGGCGATGGTCTCGGGTTTGGGGTGTTACAT
1 CGGCGACGGTCTCGGGTTTGGGGTGTTACAT
63051895 CGGCGACGGTCTCGGGTTTGGGGTGTTA
1 CGGCGACGGTCTCGGGTTTGGGGTGTTA
63051923 TAGTGGACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.08, C:0.17, G:0.44, T:0.31
Consensus pattern (31 bp):
CGGCGACGGTCTCGGGTTTGGGGTGTTACAT
Found at i:63055996 original size:27 final size:27
Alignment explanation
Indices: 63055512--63055986 Score: 575
Period size: 27 Copynumber: 17.6 Consensus size: 27
63055502 AAAGTACTCC
*
63055512 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
63055539 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
** * *
63055566 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
63055593 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
63055620 C-AGTTTACAGAATTACTATTTTACCAT
1 CGA-TTTACAGAATTACTGTTTTACCCT
63055647 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
63055674 C-AGTTTATAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* * *
63055701 TGATTTACAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
63055728 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* * *
63055755 CGATTTATAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
63055782 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
63055809 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* *
63055836 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
** * **
63055863 TAATTTACATAATTACCATTTTACCC-
1 CGATTTACAGAATTACTGTTTTACCCT
*
63055889 CGATTTACATAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
*
63055916 CTATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
63055943 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
63055970 CGATTTACAAAATTACT
1 CGATTTACAGAATTACT
63055987 AAAATACCCT
Statistics
Matches: 389, Mismatches: 48, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
26 25 0.06
27 359 0.92
28 5 0.01
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:63056967 original size:17 final size:17
Alignment explanation
Indices: 63056945--63056987 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
63056935 GGCCGAAGTG
63056945 GGGCCCATTAGGCTTTC
1 GGGCCCATTAGGCTTTC
*
63056962 GGGCCCATTGGGCTTTC
1 GGGCCCATTAGGCTTTC
63056979 GGGCCCATT
1 GGGCCCATT
63056988 TGGGTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.09, C:0.30, G:0.33, T:0.28
Consensus pattern (17 bp):
GGGCCCATTAGGCTTTC
Found at i:63057270 original size:25 final size:25
Alignment explanation
Indices: 63057242--63057289 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63057232 TTATACCATG
* * *
63057242 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63057267 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63057290 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:63057357 original size:20 final size:20
Alignment explanation
Indices: 63057332--63057371 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
63057322 ATAAATATGG
63057332 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
63057352 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
63057372 GGTAATCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:63057476 original size:23 final size:24
Alignment explanation
Indices: 63057422--63057521 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
63057412 GAGGAAGATC
* *
63057422 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
63057446 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
63057469 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
63057493 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
63057517 AAAAG
1 AAAAG
63057522 ATGCTAGGCC
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
23 22 0.31
24 48 0.69
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:63057491 original size:47 final size:48
Alignment explanation
Indices: 63057422--63057521 Score: 157
Period size: 47 Copynumber: 2.1 Consensus size: 48
63057412 GAGGAAGATC
*
63057422 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
63057469 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
63057517 AAAAG
1 AAAAG
63057522 ATGCTAGGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
47 42 0.88
48 6 0.12
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:63057786 original size:31 final size:31
Alignment explanation
Indices: 63057732--63057795 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
63057722 CGTTTACAGT
*
63057732 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
63057763 AAAGGCTTCGGCCCAGTGTTATGAGATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63057794 AA
1 AA
63057796 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63060608 original size:27 final size:27
Alignment explanation
Indices: 63060575--63061047 Score: 573
Period size: 27 Copynumber: 17.6 Consensus size: 27
63060565 AAAGTACTCC
63060575 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
63060602 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
63060629 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
63060656 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
63060683 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
63060710 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
63060737 C-AGTTTATAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* **
63060764 TGATTTACA-AATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
63060790 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
63060817 CGATTTATAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
63060844 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
63060871 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
63060898 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
63060924 CTAATTTACATAATTACCATTTTACCC-
1 C-GATTTACAGAATTACCGTTTTACCCT
* * *
63060951 CGATTTACATAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
63060978 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
63061005 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
63061032 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
63061048 TAAAATACCC
Statistics
Matches: 391, Mismatches: 44, Indels: 22
0.86 0.10 0.05
Matches are distributed among these distances:
26 50 0.13
27 337 0.86
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:63060806 original size:161 final size:162
Alignment explanation
Indices: 63060575--63061049 Score: 665
Period size: 161 Copynumber: 2.9 Consensus size: 162
63060565 AAAGTACTCC
* * * * *
63060575 CGATTTACAGAATTACCGTTTTA-CCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTGTAA
1 CGATTTATAGAATTACCGTTTTACCCCT-AATTTACATAATTACTATTTTACCCTCGATTTATAA
*
63060639 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATT
65 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATTACTGTT
*
63060703 TTACCCTCGATTTACAGAATTACTGTTTTACCCT
129 TTACCCTCGATTTACAGAATTACTATTTTACCCT
** * * *
63060737 C-AGTTTATAGAATTATTGTTTTACCCTTGATTTACA-AATTACTATTTTACCCTCGATTTATAG
1 CGA-TTTATAGAATTACCGTTTTACCCCTAATTTACATAATTACTATTTTACCCTCGATTTATAA
* * *
63060800 AATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
65 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
63060865 TACCCTC-AGTTTACAGAATTACTATTTTACCCT
130 TACCCTCGA-TTTACAGAATTACTATTTTACCCT
* * *
63060898 CGATTTATAGAATTACCGTTTTACCCCTAATTTACATAATTACCATTTTACCC-CGATTTACATA
1 CGATTTATAGAATTACCGTTTTACCCCTAATTTACATAATTACTATTTTACCCTCGATTTATAAA
* * * *
63060962 ATTATCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTT
66 ATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTT
*
63061027 ACCCTCGATTTACAAAATTACTA
131 ACCCTCGATTTACAGAATTACTA
63061050 AAATACCCTT
Statistics
Matches: 277, Mismatches: 29, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
160 1 0.00
161 232 0.84
162 41 0.15
163 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (162 bp):
CGATTTATAGAATTACCGTTTTACCCCTAATTTACATAATTACTATTTTACCCTCGATTTATAAA
ATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTT
ACCCTCGATTTACAGAATTACTATTTTACCCT
Found at i:63060912 original size:188 final size:188
Alignment explanation
Indices: 63060573--63061047 Score: 697
Period size: 188 Copynumber: 2.5 Consensus size: 188
63060563 CCAAAGTACT
** * *
63060573 CCCGATTTACAGAATTACCGTTTTACCCTC-AGTTTATAGAATTACTATTTTACCCTCGATTTGT
1 CCCGATTTACAGAATTACTATTTTACCCTCGA-TTTATAGAATTACTGTTTTACCCTCGATTTAT
63060637 AAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTAT
65 AAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTAT
* * * ***
63060702 TTTACCCTCGATTTACAGAATTACTGTTTTA-CCCTCAGTTTATAGAATTATTGTTTTAC
130 TTTACCCTCGATTTACAGAATTACCGTTTTACCCCT-AATTTACAGAATTACCATTTTAC
* *
63060761 CCTTGATTTACA-AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTAT
1 CC-CGATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTAT
63060825 AAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTAT
65 AAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTAT
* *
63060890 TTTACCCTCGATTTATAGAATTACCGTTTTACCCCTAATTTACATAATTACCATTTTAC
130 TTTACCCTCGATTTACAGAATTACCGTTTTACCCCTAATTTACAGAATTACCATTTTAC
* * * *
63060949 CCCGATTTACATAATTA-TCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTAC
1 CCCGATTTACAGAATTACT-ATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTAT
* * *
63061013 AGAATTACTGTTTTACCCTCGATTTACAAAATTAC
65 AAAATTACCGTTTTACCCTCGATTTACAGAATTAC
63061048 TAAAATACCC
Statistics
Matches: 260, Mismatches: 22, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
187 9 0.03
188 238 0.92
189 13 0.05
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (188 bp):
CCCGATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTATA
AAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATT
TTACCCTCGATTTACAGAATTACCGTTTTACCCCTAATTTACAGAATTACCATTTTAC
Found at i:63062321 original size:25 final size:25
Alignment explanation
Indices: 63062292--63062339 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63062282 CCTTATAATG
* * *
63062292 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63062317 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63062340 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:63062408 original size:20 final size:20
Alignment explanation
Indices: 63062383--63062441 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
63062373 TAAATATGGT
63062383 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
63062403 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
63062423 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
63062442 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:63062423 original size:11 final size:11
Alignment explanation
Indices: 63062387--63062441 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
63062377 TATGGTATGT
63062387 ATGATATGCAC
1 ATGATATGCAC
* *
63062398 ATGAAATG--T
1 ATGATATGCAC
63062407 ATGATATGCAC
1 ATGATATGCAC
*
63062418 ATGATATG--T
1 ATGATATGCAC
63062427 ATGATATGCAC
1 ATGATATGCAC
63062438 ATGA
1 ATGA
63062442 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:63062516 original size:24 final size:24
Alignment explanation
Indices: 63062489--63062634 Score: 215
Period size: 24 Copynumber: 6.1 Consensus size: 24
63062479 ATGGAGGAAG
63062489 ATCAAAAGGGCTTATGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTT
63062513 ATCAAAAGGGCTTATGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTT
63062537 ATCAAAAGGGCTTATGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTT
63062561 AT-AAAAGGGCTTATGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTT
** *
63062584 ATTGAAAGGGCTTTTGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTT
* *
63062608 ATTAAAAGAGGC-TAGGCCTCCAGTT
1 ATCAAAAG-GGCTTATGCC-CCAGTT
63062633 AT
1 AT
63062635 ATGATAAAGC
Statistics
Matches: 114, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.20
24 80 0.70
25 11 0.10
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
ATCAAAAGGGCTTATGCCCCAGTT
Found at i:63062585 original size:47 final size:47
Alignment explanation
Indices: 63062489--63062634 Score: 213
Period size: 47 Copynumber: 3.0 Consensus size: 47
63062479 ATGGAGGAAG
63062489 ATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTT
63062537 ATCAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTT
** * *
63062584 ATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTT
63062633 AT
1 AT
63062635 ATGATAAAGC
Statistics
Matches: 91, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.47
48 37 0.41
49 11 0.12
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (47 bp):
ATCAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTT
Found at i:63062608 original size:71 final size:72
Alignment explanation
Indices: 63062492--63062635 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
63062482 GAGGAAGATC
*
63062492 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
63062555 CCAGTTAT
65 CCAGTTAT
** * *
63062563 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
63062628 CAGTTAT
66 CAGTTAT
63062635 A
1 A
63062636 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:63062880 original size:31 final size:31
Alignment explanation
Indices: 63062826--63062889 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
63062816 CGTTTACAGT
*
63062826 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
63062857 AAAGGCTTCGGCCCAGTGTTATGAGATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63062888 AA
1 AA
63062890 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63065778 original size:29 final size:29
Alignment explanation
Indices: 63065746--63065834 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
63065736 CTCAGTTGAA
63065746 TAAACCCTTTATCAAGCAACTCTTGCAAT
1 TAAACCCTTTATCAAGCAACTCTTGCAAT
**
63065775 TAAA-CCTTGGGT--A-C-ACTCAGTTG-AA-
1 TAAACCCTT-TATCAAGCAACTC--TTGCAAT
63065800 TAAACCCTTTATCAAGCAACTCTTGCAAT
1 TAAACCCTTTATCAAGCAACTCTTGCAAT
63065829 TAAACC
1 TAAACC
63065835 TTCAATTCCT
Statistics
Matches: 46, Mismatches: 4, Indels: 20
0.66 0.06 0.29
Matches are distributed among these distances:
25 9 0.20
26 7 0.15
27 8 0.17
28 7 0.15
29 15 0.33
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (29 bp):
TAAACCCTTTATCAAGCAACTCTTGCAAT
Found at i:63065796 original size:54 final size:54
Alignment explanation
Indices: 63065732--63065836 Score: 210
Period size: 54 Copynumber: 1.9 Consensus size: 54
63065722 CCCACGGAGA
63065732 TACACTCAGTTGAATAAACCCTTTATCAAGCAACTCTTGCAATTAAACCTTGGG
1 TACACTCAGTTGAATAAACCCTTTATCAAGCAACTCTTGCAATTAAACCTTGGG
63065786 TACACTCAGTTGAATAAACCCTTTATCAAGCAACTCTTGCAATTAAACCTT
1 TACACTCAGTTGAATAAACCCTTTATCAAGCAACTCTTGCAATTAAACCTT
63065837 CAATTCCTTG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.30
Consensus pattern (54 bp):
TACACTCAGTTGAATAAACCCTTTATCAAGCAACTCTTGCAATTAAACCTTGGG
Found at i:63074456 original size:30 final size:30
Alignment explanation
Indices: 63074370--63074457 Score: 86
Period size: 30 Copynumber: 2.9 Consensus size: 30
63074360 CTAGCTTATT
* *
63074370 TTCAACTCGCGAGCTAAACCTTAGCTCAAC
1 TTCAGCTCACGAGCTAAACCTTAGCTCAAC
* * * * * *
63074400 TTCAGCTTAGGAGTTTAGCCTCAGCTCAAC
1 TTCAGCTCACGAGCTAAACCTTAGCTCAAC
* *
63074430 TTTAGCTCACGAGCTAAAACTTAGCTCA
1 TTCAGCTCACGAGCTAAACCTTAGCTCA
63074458 TTTTAGTTTA
Statistics
Matches: 42, Mismatches: 16, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (30 bp):
TTCAGCTCACGAGCTAAACCTTAGCTCAAC
Found at i:63074883 original size:13 final size:13
Alignment explanation
Indices: 63074865--63074889 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63074855 GTATTGATCA
63074865 TGTGTTCACACCT
1 TGTGTTCACACCT
63074878 TGTGTTCACACC
1 TGTGTTCACACC
63074890 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:63076841 original size:5 final size:5
Alignment explanation
Indices: 63076831--63076889 Score: 57
Period size: 5 Copynumber: 11.0 Consensus size: 5
63076821 AAGAGAAAAC
*
63076831 AAAGA AAAGA AAAGAA AAAGAA AAAAA AAAGAA AAAGA AAACGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAG-A AAAGA AAA-GA AA-AGA
63076880 AAAGA AAAGA
1 AAAGA AAAGA
63076890 GCGGCAAGAG
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
4 1 0.02
5 26 0.55
6 19 0.40
7 1 0.02
ACGTcount: A:0.81, C:0.02, G:0.15, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:63076850 original size:16 final size:16
Alignment explanation
Indices: 63076831--63076889 Score: 75
Period size: 16 Copynumber: 3.6 Consensus size: 16
63076821 AAGAGAAAAC
63076831 AAAGAAAAGAAAAGAA
1 AAAGAAAAGAAAAGAA
*
63076847 AAAGAAAAAAAAAAGAA
1 AAAG-AAAAGAAAAGAA
*
63076864 AAAGAAAACG-AAATAA
1 AAAGAAAA-GAAAAGAA
63076880 AAAGAAAAGA
1 AAAGAAAAGA
63076890 GCGGCAAGAG
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 1 0.03
16 21 0.57
17 15 0.41
ACGTcount: A:0.81, C:0.02, G:0.15, T:0.02
Consensus pattern (16 bp):
AAAGAAAAGAAAAGAA
Found at i:63076887 original size:6 final size:6
Alignment explanation
Indices: 63076831--63076876 Score: 62
Period size: 6 Copynumber: 8.2 Consensus size: 6
63076821 AAGAGAAAAC
*
63076831 AAAG-A AAAG-A AAAGAA AAAGAA AAA-AA AAAGAA AAAGAA AACGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
63076876 A
1 A
63076877 TAAAAAGAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
5 14 0.37
6 24 0.63
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:63077013 original size:30 final size:30
Alignment explanation
Indices: 63076971--63077051 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
63076961 TTGGAAAACA
*
63076971 AAAAAG-GAAATGAAAAAGAAAATGAGATTG
1 AAAAAGAG-AATGAAAAAGAAAATGAGAGTG
* ***
63077001 AAAAAGAGAATGAAGAAGAGTTTGAGAGTG
1 AAAAAGAGAATGAAAAAGAAAATGAGAGTG
63077031 AAAAAGA-AGATGAAAAAGAAA
1 AAAAAGAGA-ATGAAAAAGAAA
63077052 TTGAAAAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
29 1 0.02
30 39 0.95
31 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.26, T:0.12
Consensus pattern (30 bp):
AAAAAGAGAATGAAAAAGAAAATGAGAGTG
Found at i:63079625 original size:13 final size:13
Alignment explanation
Indices: 63079607--63079631 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63079597 GTATTAATCA
63079607 TGTGTTCACACCT
1 TGTGTTCACACCT
63079620 TGTGTTCACACC
1 TGTGTTCACACC
63079632 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:63081815 original size:21 final size:21
Alignment explanation
Indices: 63081789--63081842 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
63081779 AAAATAGGGC
63081789 ACACGCCCGTGTGGAAAGGTA
1 ACACGCCCGTGTGGAAAGGTA
* *
63081810 ACACGCCCGTGTTGAAGGGTA
1 ACACGCCCGTGTGGAAAGGTA
* *
63081831 ACATGCTCGTGT
1 ACACGCCCGTGT
63081843 CCCACACCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.20
Consensus pattern (21 bp):
ACACGCCCGTGTGGAAAGGTA
Found at i:63083161 original size:44 final size:44
Alignment explanation
Indices: 63083112--63083201 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
63083102 TTAATGCTTG
63083112 GATATTATATAAATTGTATATACGTGACTATTGTTATGTTTAAC
1 GATATTATATAAATTGTATATACGTGACTATTGTTATGTTTAAC
63083156 GATATTATATAAATTGTATATACGTGACTATTGTTATGTTTAAC
1 GATATTATATAAATTGTATATACGTGACTATTGTTATGTTTAAC
63083200 GA
1 GA
63083202 CATATCGACT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.44
Consensus pattern (44 bp):
GATATTATATAAATTGTATATACGTGACTATTGTTATGTTTAAC
Found at i:63086885 original size:28 final size:30
Alignment explanation
Indices: 63086854--63086914 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 30
63086844 AAAGTGATTT
*
63086854 TTGACAAAAATGTCAATT-A-GGGATTAAA
1 TTGACAAAAATGTAAATTGAGGGGATTAAA
* * *
63086882 TTGAGAAAAGTGTAAATTGAGGGGGTTAAA
1 TTGACAAAAATGTAAATTGAGGGGATTAAA
63086912 TTG
1 TTG
63086915 TGAAATAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 15 0.56
29 1 0.04
30 11 0.41
ACGTcount: A:0.41, C:0.03, G:0.26, T:0.30
Consensus pattern (30 bp):
TTGACAAAAATGTAAATTGAGGGGATTAAA
Found at i:63091465 original size:18 final size:18
Alignment explanation
Indices: 63091426--63091503 Score: 72
Period size: 18 Copynumber: 4.3 Consensus size: 18
63091416 AAACAAATAT
*
63091426 TAAAATT-AAGATTAAAGA
1 TAAAATTAAAGA-AAAAGA
63091444 -AAAATTAAAGAAAAAGA
1 TAAAATTAAAGAAAAAGA
* *
63091461 TAAAAATGAAA-AAAAATA
1 T-AAAATTAAAGAAAAAGA
*
63091479 TTAAAATTAAAGAAAATGA
1 -TAAAATTAAAGAAAAAGA
63091498 TAAAAT
1 TAAAAT
63091504 AAATAAACTT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
17 11 0.22
18 24 0.49
19 14 0.29
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (18 bp):
TAAAATTAAAGAAAAAGA
Found at i:63091494 original size:19 final size:19
Alignment explanation
Indices: 63091443--63091502 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
63091433 AAGATTAAAG
63091443 AAAAATTAAAGAAAAAGAT
1 AAAAATTAAAGAAAAAGAT
* *
63091462 AAAAATGAAA-AAAAATAT
1 AAAAATTAAAGAAAAAGAT
* *
63091480 TAAAATTAAAGAAAATGAT
1 AAAAATTAAAGAAAAAGAT
63091499 AAAA
1 AAAA
63091503 TAAATAAACT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.18
Consensus pattern (19 bp):
AAAAATTAAAGAAAAAGAT
Found at i:63091645 original size:195 final size:194
Alignment explanation
Indices: 63091314--63091668 Score: 647
Period size: 195 Copynumber: 1.8 Consensus size: 194
63091304 CCATGACCCC
63091314 AAACTTTAAAAAAATTGGACTGCTTAAAAATAAATAAACTTATTAGTATTTGGGCCAATTTGACC
1 AAACTTTAAAAAAATTGGACTGCTTAAAAATAAATAAACTTATTAGTATTTGGGCCAATTTGACC
**
63091379 TTGTTATTAAAATAAATAAAATTAACATCAAACTTAAAAACAAATATTAAAATTAAGATTAAAGA
66 CCGTTATTAAAATAAATAAAATTAACATCAAACTTAAAAACAAATATTAAAATTAAGATTAAAGA
63091444 AAAATTAAAGAAAAAGATAAAAATGAAAAAAAATATTAAAATTAAAGAAAATGATAAAATAAAT
131 AAAATTAAAGAAAAAGATAAAAATGAAAAAAAATATTAAAATTAAAGAAAATGATAAAATAAAT
*
63091508 AAACTTTTAAAAAATTGGACTGCTTAAAAATAAATAAACTTATTAGTATTTGGGCCAATTTGACC
1 AAACTTTAAAAAAATTGGACTGCTTAAAAATAAATAAACTTATTAGTATTTGGGCCAATTTGA-C
*
63091573 CCCGTTATTAAAATAAATAAAATTAACATCAAACTTAAAAACAAATATTAAAATTAAGATTAAAT
65 CCCGTTATTAAAATAAATAAAATTAACATCAAACTTAAAAACAAATATTAAAATTAAGATTAAAG
* *
63091638 TAAAATTAAATAAAAAGATAAAAATGAAAAA
130 AAAAATTAAAGAAAAAGATAAAAATGAAAAA
63091669 CAAAACTAGA
Statistics
Matches: 154, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
194 62 0.40
195 92 0.60
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (194 bp):
AAACTTTAAAAAAATTGGACTGCTTAAAAATAAATAAACTTATTAGTATTTGGGCCAATTTGACC
CCGTTATTAAAATAAATAAAATTAACATCAAACTTAAAAACAAATATTAAAATTAAGATTAAAGA
AAAATTAAAGAAAAAGATAAAAATGAAAAAAAATATTAAAATTAAAGAAAATGATAAAATAAAT
Found at i:63097353 original size:29 final size:29
Alignment explanation
Indices: 63097321--63097511 Score: 258
Period size: 29 Copynumber: 6.6 Consensus size: 29
63097311 GATAGTCAAA
*
63097321 ACCATCCCTTTTCATATTTGATAGTTGTC
1 ACCATCCCTTTTCATATTTGATAGTCGTC
* * *
63097350 ACCATCCCTTTTCATATTCGATGGTCTTC
1 ACCATCCCTTTTCATATTTGATAGTCGTC
* * *
63097379 ACCATCCATTTTCATATTTGATGGTCG-A
1 ACCATCCCTTTTCATATTTGATAGTCGTC
* * * *
63097407 AACATCCCTTTTCATATTCGACAGTTGTC
1 ACCATCCCTTTTCATATTTGATAGTCGTC
* *
63097436 ACCATCCCTTTTCATATTTGATGGTCATC
1 ACCATCCCTTTTCATATTTGATAGTCGTC
63097465 ACCATCCCTTTTCATATTTGATAGTCGTC
1 ACCATCCCTTTTCATATTTGATAGTCGTC
63097494 ACCATCCCTTTTCATATT
1 ACCATCCCTTTTCATATT
63097512 CGATTGGCGT
Statistics
Matches: 138, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
28 21 0.15
29 117 0.85
ACGTcount: A:0.21, C:0.27, G:0.10, T:0.41
Consensus pattern (29 bp):
ACCATCCCTTTTCATATTTGATAGTCGTC
Found at i:63097468 original size:86 final size:87
Alignment explanation
Indices: 63097310--63097514 Score: 306
Period size: 86 Copynumber: 2.4 Consensus size: 87
63097300 GTGTGCTAAA
* * *
63097310 TGATAGTC-AAAACCATCCCTTTTCATATTTGATAGTTGTCACCATCCCTTTTCATATTCGATGG
1 TGATAGTCGTAAA-CATCCCTTTTCATATTCGACAGTTGTCACCATCCCTTTTCATATTCGATGG
*
63097374 TCTTCACCATCCATTTTCATATT
65 TCATCACCATCCATTTTCATATT
* *
63097397 TGATGGTCG-AAACATCCCTTTTCATATTCGACAGTTGTCACCATCCCTTTTCATATTTGATGGT
1 TGATAGTCGTAAACATCCCTTTTCATATTCGACAGTTGTCACCATCCCTTTTCATATTCGATGGT
*
63097461 CATCACCATCCCTTTTCATATT
66 CATCACCATCCATTTTCATATT
* *
63097483 TGATAGTCGTCACCATCCCTTTTCATATTCGA
1 TGATAGTCGTAAACATCCCTTTTCATATTCGA
63097515 TTGGCGTCGA
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
86 77 0.72
87 30 0.28
ACGTcount: A:0.23, C:0.26, G:0.11, T:0.40
Consensus pattern (87 bp):
TGATAGTCGTAAACATCCCTTTTCATATTCGACAGTTGTCACCATCCCTTTTCATATTCGATGGT
CATCACCATCCATTTTCATATT
Found at i:63099795 original size:37 final size:37
Alignment explanation
Indices: 63099745--63099820 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
63099735 ATGAAAGCCT
63099745 TATAGAACAAATCTTACAACAACTTCTTTTTATCTGG
1 TATAGAACAAATCTTACAACAACTTCTTTTTATCTGG
63099782 TATAGAACAAATCTTACAACAACTTCTTTTTATCTGG
1 TATAGAACAAATCTTACAACAACTTCTTTTTATCTGG
63099819 TA
1 TA
63099821 AACTTAAAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (37 bp):
TATAGAACAAATCTTACAACAACTTCTTTTTATCTGG
Found at i:63105272 original size:29 final size:29
Alignment explanation
Indices: 63105248--63105341 Score: 152
Period size: 29 Copynumber: 3.2 Consensus size: 29
63105238 TCGCACACCC
* *
63105248 AGTGCCGTATTTTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
63105277 AGTGCCATATATTTCTAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
63105306 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
63105335 AGTGCCA
1 AGTGCCA
63105342 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.31
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:63105273 original size:58 final size:58
Alignment explanation
Indices: 63105210--63105341 Score: 158
Period size: 58 Copynumber: 2.3 Consensus size: 58
63105200 GATTTAAGCC
* * * *
63105210 CGCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCGAGCAT-GCACACCCAGTGCCATATATTTCCAGCA
* * * * **
63105268 TGCACACTTAGTGCCATATATTTCTAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCGAGCATGCACACCCAGTGCCATATATTTCCAGCA
63105326 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63105342 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
58 61 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCGAGCATGCACACCCAGTGCCATATATTTCCAGCA
Found at i:63109640 original size:40 final size:40
Alignment explanation
Indices: 63109596--63109824 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
63109586 GCTACTTGCT
63109596 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
63109636 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
63109676 CAAATGCCTTCGGGACTTAGCCC-G-AATAGTAACGACAAATGCGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAAC-TC----GC-A
*
63109720 C-AATGCAGACTTCGGG-CTTAGCCCGGATATAGT-ACTCGCA
1 CAAATGC---CTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
63109760 CAAATGCCTTCGGG-CTTAGCCCGG-T-TAGTCACTAGC-
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
63109796 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
63109825 CATCCGAATA
Statistics
Matches: 168, Mismatches: 5, Indels: 33
0.82 0.02 0.16
Matches are distributed among these distances:
36 18 0.11
37 16 0.10
38 26 0.15
39 3 0.02
40 65 0.39
41 7 0.04
43 7 0.04
44 2 0.01
45 9 0.05
46 10 0.06
47 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63109775 original size:38 final size:40
Alignment explanation
Indices: 63109563--63109820 Score: 268
Period size: 40 Copynumber: 6.5 Consensus size: 40
63109553 AAACCAAGTA
* * * *
63109563 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
63109602 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63109642 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63109682 CCTTCGGGACTTAGCCC-GA-ATAGTAACGACAAATGCGAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TC----GC-ACAAATG
63109725 CAGACTTCGGG-CTTAGCCCGGATATAGT-ACTCGCACAAATG
1 C---CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
63109766 CCTTCGGG-CTTAGCCCGG-T-TAGTCACTAGC-CAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63109802 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63109821 TTATCATCCG
Statistics
Matches: 194, Mismatches: 9, Indels: 34
0.82 0.04 0.14
Matches are distributed among these distances:
36 18 0.09
37 16 0.08
38 25 0.13
39 15 0.08
40 79 0.41
41 7 0.04
43 7 0.04
44 2 0.01
45 9 0.05
46 11 0.06
47 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63117741 original size:39 final size:40
Alignment explanation
Indices: 63117687--63117978 Score: 429
Period size: 40 Copynumber: 7.4 Consensus size: 40
63117677 AAACCAAGTA
* * * *
63117687 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
63117726 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63117766 CCTTCGGGACTTAGCCC-GATTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCACAAATG
63117806 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63117846 CCTTCGGG-CTTAGCCCGGTTATAGTAACTCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63117884 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
63117923 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
63117962 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
63117979 AGTTATCATC
Statistics
Matches: 234, Mismatches: 10, Indels: 17
0.90 0.04 0.07
Matches are distributed among these distances:
38 37 0.16
39 85 0.36
40 110 0.47
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63120036 original size:51 final size:51
Alignment explanation
Indices: 63119960--63120062 Score: 118
Period size: 51 Copynumber: 2.0 Consensus size: 51
63119950 CTTGACATCT
** * * *
63119960 TGTAATAGCCTGTTTTCAGTGAAATT-GAAACAGTGGTTCTGGGACCACAAA
1 TGTAATAGCCCATTTTCAGTCAAATTAG-AACAGTGATTCTGAGACCACAAA
* * *
63120011 TGTAATAGCCCATTTTTAGTCAAATTAGAATAGTGATTTTGAGACCACAAA
1 TGTAATAGCCCATTTTCAGTCAAATTAGAACAGTGATTCTGAGACCACAAA
63120062 T
1 T
63120063 TCGAGGTCAA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
51 42 0.98
52 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (51 bp):
TGTAATAGCCCATTTTCAGTCAAATTAGAACAGTGATTCTGAGACCACAAA
Found at i:63126856 original size:12 final size:12
Alignment explanation
Indices: 63126839--63126865 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
63126829 TCAATCGGGT
63126839 ATCCAAACAAAG
1 ATCCAAACAAAG
63126851 ATCCAAACAAAG
1 ATCCAAACAAAG
63126863 ATC
1 ATC
63126866 GTGGAAAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.26, G:0.07, T:0.11
Consensus pattern (12 bp):
ATCCAAACAAAG
Found at i:63129071 original size:41 final size:41
Alignment explanation
Indices: 63129003--63129133 Score: 142
Period size: 41 Copynumber: 3.2 Consensus size: 41
63128993 GATATCACGT
* *
63129003 ACACTAAGTGCCAATACATAGCGGAAGCTAT-TATAATCTTGC
1 ACACTAAGTGCC-ATACATAGCCGAAGCTATCT-CAATCTTGC
* * **
63129045 ACACTAAGTGCCTTACATAGCTGAAGCTATCTCGGTCTTGC
1 ACACTAAGTGCCATACATAGCCGAAGCTATCTCAATCTTGC
* *
63129086 ACACTAAGTTCCATATATAGCCGAAGCTATCTCGAA--TTGC
1 ACACTAAGTGCCATACATAGCCGAAGCTATCTC-AATCTTGC
63129126 ACACTAAG
1 ACACTAAG
63129134 GCCTATTCTG
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
40 12 0.16
41 51 0.67
42 13 0.17
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (41 bp):
ACACTAAGTGCCATACATAGCCGAAGCTATCTCAATCTTGC
Found at i:63132452 original size:27 final size:28
Alignment explanation
Indices: 63132391--63132460 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
63132381 AAATTTGTAC
* *
63132391 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
63132419 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
*
63132446 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63132461 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:63132499 original size:55 final size:55
Alignment explanation
Indices: 63132392--63132500 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
63132382 AATTTGTACA
* * * * *
63132392 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGAATATATG
1 GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
* * *
63132447 GCACTAAGTGTGCGTGATCGAGTAT-TAAGCACTATGTGTGCGAACTCTATATAT
1 GCACTAAGTGTGCGAGATCGAGTATAT-AGCACTAAGTGTGCGAACTCAATATAT
63132501 ATATTTCCGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
Found at i:63140507 original size:27 final size:28
Alignment explanation
Indices: 63140446--63140515 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
63140436 AAATTTGTAC
* *
63140446 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
63140474 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
*
63140501 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63140516 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:63140554 original size:55 final size:55
Alignment explanation
Indices: 63140447--63140555 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
63140437 AATTTGTACA
* * * * *
63140447 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGAATATATG
1 GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
* * *
63140502 GCACTAAGTGTGCGTGATCGAGTAT-TAAGCACTATGTGTGCGAACTCTATATAT
1 GCACTAAGTGTGCGAGATCGAGTATAT-AGCACTAAGTGTGCGAACTCAATATAT
63140556 ATATTTCCGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
Found at i:63143148 original size:40 final size:40
Alignment explanation
Indices: 63143021--63143150 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
63143011 ATGCTGGAAA
* *
63143021 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
63143061 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
63143101 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63143141 TTATATCCGG
1 TTATATCCGG
63143151 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63151126 original size:40 final size:40
Alignment explanation
Indices: 63150999--63151128 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
63150989 ATGCTGGAAA
* *
63150999 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
63151039 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
63151079 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63151119 TTATATCCGG
1 TTATATCCGG
63151129 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63153531 original size:56 final size:56
Alignment explanation
Indices: 63153471--63153605 Score: 189
Period size: 56 Copynumber: 2.4 Consensus size: 56
63153461 ATGTGATTCT
*
63153471 GATATATGTGTACGAGTAAGACCACGTTTTATACGTTGGCATTAATATATGACTCC
1 GATATATGTGTACGAGTAAGACCACGTTTTATACGTTGGCATCAATATATGACTCC
* * * * *
63153527 GATATATATGTGCGAGTAAGACAACGTTTTATACGTTGGCATCAATATGTGATTCC
1 GATATATGTGTACGAGTAAGACCACGTTTTATACGTTGGCATCAATATATGACTCC
* * *
63153583 GATATGTGTTTACAAGTAAGACC
1 GATATATGTGTACGAGTAAGACC
63153606 CTGTCGGGAC
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 67 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (56 bp):
GATATATGTGTACGAGTAAGACCACGTTTTATACGTTGGCATCAATATATGACTCC
Found at i:63155852 original size:13 final size:13
Alignment explanation
Indices: 63155836--63155886 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
63155826 TAAACCAAAA
*
63155836 TTTTAAAAAACAC
1 TTTTTAAAAACAC
* * *
63155849 TTTTTCACAGCAC
1 TTTTTAAAAACAC
*
63155862 TTTTCAAAAACAC
1 TTTTTAAAAACAC
63155875 TTTTTAAAAACA
1 TTTTTAAAAACA
63155887 TTGCCAAACT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.43, C:0.20, G:0.02, T:0.35
Consensus pattern (13 bp):
TTTTTAAAAACAC
Found at i:63158057 original size:50 final size:51
Alignment explanation
Indices: 63157981--63158089 Score: 125
Period size: 50 Copynumber: 2.2 Consensus size: 51
63157971 CCTTGTAGTA
* *
63157981 AAAGCTACCTTCTTCACAAAGTGGCCTTCACATAGTA-CACACT-TGCGACC
1 AAAGCTATCTTCTTCACAAAGTGGCCTACACATAGTATCACA-TATGCGACC
* * * *
63158031 AAAGCTATCTT-TTACACATAGTGGCCTACACTTAGTATCACATATGTGATC
1 AAAGCTATCTTCTT-CACAAAGTGGCCTACACATAGTATCACATATGCGACC
63158082 AAAGCTAT
1 AAAGCTAT
63158090 TGGGTATGCA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
49 2 0.04
50 31 0.62
51 17 0.34
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (51 bp):
AAAGCTATCTTCTTCACAAAGTGGCCTACACATAGTATCACATATGCGACC
Found at i:63160240 original size:413 final size:412
Alignment explanation
Indices: 63159473--63160299 Score: 1492
Period size: 413 Copynumber: 2.0 Consensus size: 412
63159463 TCCTTTTAGC
63159473 TAAATTGAGTGCCCAAATGTCAAAATTTTCGAACGCAATTTTCATGAAATTATTCTGTGAAATTG
1 TAAATTGAGTGCCCAAATGTCAAAATTTTCGAACGCAATTTTCATGAAATTATTCTGTGAAATTG
** *
63159538 TAGACCATAAAATGTAATAAAAATAATTTTTTTCTCATCGGATTTGTGGTCCCAAAACCACTATT
66 TAGACCATAAAATGTAATAAAAATAAAATTTTTCTCATCAGATTTGTGGTCCCAAAACCACTATT
*
63159603 CTGACTACGCCCAAAATCGGGATGTTACATTTCTCCCGCTTTAGGGATTTTCGTCCCCGAAAGTC
131 CTGACTACGCCCAAAATCGGGATGTTACATTTCTCCCGCTTTAGGGATTTTCGTCCCCGAAAATC
* *
63159668 TTACCAGAAAAGTGGTTTTGGTTTTTCACTTATTTTCCTCAATCCTATAGTCGATGTCAATGAAC
196 TTACCAGAAAAGTAGTTTTGGTTTTTCACTTATTTTCCTCAATCCTATAGTAGATGTCAATGAAC
* * *
63159733 TTTCACTGAAGCTAAGCTTTTACTACCTATCTCTTAAATTCCAGATACAAGAGTCATGAGTGGTT
261 TTTCACTCAAGCTAAGCTTTTACTACCTATCTCTTAAATTCCAGATACAAAAGTCATGAATGGTT
* *
63159798 TTCGCTTTGTAACATTTTCACTAAAACTTAATCTTGATCAGAAAGTTCATGTACTCAAAAGTCAA
326 TTCGCTCTATAACATTTTCACTAAAACTTAATCTTGATCAGAAAGTTCATGTACTCAAAAGTCAA
63159863 ATCCATTCTATCATGTTACATA
391 ATCCATTCTATCATGTTACATA
63159885 TAAATTGAGTGCCCAAATGTCAAAATTTTCGAACGCAATTTTCATGAAATTATTCTGTGAAATTG
1 TAAATTGAGTGCCCAAATGTCAAAATTTTCGAACGCAATTTTCATGAAATTATTCTGTGAAATTG
* * *
63159950 TAGACCATAAAAATGTAATAAAAATAAAATTTTTCTCATCAGATTTGTGGTCTCGAAACCACTGT
66 TAGACCAT-AAAATGTAATAAAAATAAAATTTTTCTCATCAGATTTGTGGTCCCAAAACCACTAT
*
63160015 TCTGACTAGGCCCAAAATCGGGATGTTACATTTCTCCCGCTTTAGGGATTTTCGTCCCCGAAAAT
130 TCTGACTACGCCCAAAATCGGGATGTTACATTTCTCCCGCTTTAGGGATTTTCGTCCCCGAAAAT
63160080 CTTACCAGAAAAGTAGTTTTGGTTTTTCACTTATTTTCCTCAATCCTATAGTAGATGTCAATGAA
195 CTTACCAGAAAAGTAGTTTTGGTTTTTCACTTATTTTCCTCAATCCTATAGTAGATGTCAATGAA
63160145 CTTTCACTCAAGCTAAGCTTTTACTACCTATCTCTTAAATTCCAGATACAAAAGTCATGAATGGT
260 CTTTCACTCAAGCTAAGCTTTTACTACCTATCTCTTAAATTCCAGATACAAAAGTCATGAATGGT
* *
63160210 TTTCGCTCTATAACATTTTCACTGAAACTTAATCTTGATCAGAAAGTTCATGTACTCAAAAGTCC
325 TTTCGCTCTATAACATTTTCACTAAAACTTAATCTTGATCAGAAAGTTCATGTACTCAAAAGTCA
63160275 AATCCATTCTATCATGTTACATA
390 AATCCATTCTATCATGTTACATA
63160298 TA
1 TA
63160300 CATTCATACC
Statistics
Matches: 397, Mismatches: 17, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
412 73 0.18
413 324 0.82
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.35
Consensus pattern (412 bp):
TAAATTGAGTGCCCAAATGTCAAAATTTTCGAACGCAATTTTCATGAAATTATTCTGTGAAATTG
TAGACCATAAAATGTAATAAAAATAAAATTTTTCTCATCAGATTTGTGGTCCCAAAACCACTATT
CTGACTACGCCCAAAATCGGGATGTTACATTTCTCCCGCTTTAGGGATTTTCGTCCCCGAAAATC
TTACCAGAAAAGTAGTTTTGGTTTTTCACTTATTTTCCTCAATCCTATAGTAGATGTCAATGAAC
TTTCACTCAAGCTAAGCTTTTACTACCTATCTCTTAAATTCCAGATACAAAAGTCATGAATGGTT
TTCGCTCTATAACATTTTCACTAAAACTTAATCTTGATCAGAAAGTTCATGTACTCAAAAGTCAA
ATCCATTCTATCATGTTACATA
Found at i:63161273 original size:15 final size:15
Alignment explanation
Indices: 63161253--63161288 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
63161243 TCAAGATAAG
* *
63161253 GAAATCTATAATGGA
1 GAAATCTAGAATAGA
63161268 GAAATCTAGAATAGA
1 GAAATCTAGAATAGA
63161283 GAAATC
1 GAAATC
63161289 CAACATAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.50, C:0.08, G:0.19, T:0.22
Consensus pattern (15 bp):
GAAATCTAGAATAGA
Found at i:63164377 original size:186 final size:186
Alignment explanation
Indices: 63164058--63164434 Score: 682
Period size: 186 Copynumber: 2.0 Consensus size: 186
63164048 CAATAAGTAC
* *
63164058 AATTTATTCTTTAAATTCACCCCTGTTTTGCTATCTGATAGTTCTGACCCCTTTGCACTGAAAAT
1 AATTTATTCTTTAAATTCACCCCTGTTTTGCTATCTGACAGTTCTAACCCCTTTGCACTGAAAAT
* *
63164123 TAATTATCTCTTCGTACAAGATTTGGATAATGTTCCTGTTTATTTCTTTCGAAAATAGACTTATT
66 TAATTATCTCTTCGTACAAGATTTGGATAATGTTCCTATTTATTTCTTTCGAAAATAGACTCATT
*
63164188 AAGGATTTTAGGCAGATAAATTATAGCCCATAATTATTTTTTTTACAAAGTTTAAT
131 AAGGATTTTAGGCAGATAAATTATAGCCCATAATTATTATTTTTACAAAGTTTAAT
63164244 AATTTATTCTTTAAATTCACCCCTGTTTTGCTATCTGACAGTTCTAACCCCTTTGCACTGAAAAT
1 AATTTATTCTTTAAATTCACCCCTGTTTTGCTATCTGACAGTTCTAACCCCTTTGCACTGAAAAT
* *
63164309 TAATTATCTCTTTGTACAAGATTTGGATAATGTTTCTATTTATTTCTTTCGAAAATAGACTCATT
66 TAATTATCTCTTCGTACAAGATTTGGATAATGTTCCTATTTATTTCTTTCGAAAATAGACTCATT
63164374 AAGGATTTTAGGCAGATAAATTATAGCCCATAATTATTATTTTTACAAAGTTTAAT
131 AAGGATTTTAGGCAGATAAATTATAGCCCATAATTATTATTTTTACAAAGTTTAAT
*
63164430 GATTT
1 AATTT
63164435 CCCCAAATCA
Statistics
Matches: 183, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
186 183 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.43
Consensus pattern (186 bp):
AATTTATTCTTTAAATTCACCCCTGTTTTGCTATCTGACAGTTCTAACCCCTTTGCACTGAAAAT
TAATTATCTCTTCGTACAAGATTTGGATAATGTTCCTATTTATTTCTTTCGAAAATAGACTCATT
AAGGATTTTAGGCAGATAAATTATAGCCCATAATTATTATTTTTACAAAGTTTAAT
Found at i:63165001 original size:51 final size:51
Alignment explanation
Indices: 63164891--63165002 Score: 136
Period size: 51 Copynumber: 2.2 Consensus size: 51
63164881 CCCTTGTAGT
* * *
63164891 CAAAGCTACCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
1 CAAAGCTATCTTCTTCACAAAGTGGCCTGCACATAGTACCACACATGTGAC
* * * *
63164942 CAAAGCTATCTT-TTACACATAGTGGTCTGCACTTAGTACCACACATGTGAT
1 CAAAGCTATCTTCTT-CACAAAGTGGCCTGCACATAGTACCACACATGTGAC
*
63164993 CGAAGCTATC
1 CAAAGCTATC
63165003 AAGTACATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
50 2 0.04
51 50 0.96
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (51 bp):
CAAAGCTATCTTCTTCACAAAGTGGCCTGCACATAGTACCACACATGTGAC
Found at i:63165080 original size:50 final size:51
Alignment explanation
Indices: 63165011--63165141 Score: 147
Period size: 52 Copynumber: 2.6 Consensus size: 51
63165001 TCAAGTACAT
* * * **
63165011 ATAGGAGCTTGCACTTAGTACTACACATGCGACCT-AATCATCTGGTACAC
1 ATAGTAGCTTGCACATAGTACTACACATGCGACCTAAACCATCTGAAACAC
* * * * *
63165061 GTAGTAGCTTGCACATAGTACTACACACGTGACCTAAAACCATTTTAAACAC
1 ATAGTAGCTTGCACATAGTACTACACATGCGACCT-AAACCATCTGAAACAC
*
63165113 ATAGTAGCCTGCACATAGTACTACACATG
1 ATAGTAGCTTGCACATAGTACTACACATG
63165142 TGTTTTCACA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
50 30 0.45
52 36 0.55
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (51 bp):
ATAGTAGCTTGCACATAGTACTACACATGCGACCTAAACCATCTGAAACAC
Found at i:63173709 original size:39 final size:39
Alignment explanation
Indices: 63173659--63173745 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
63173649 AACTTAATGT
* * *
63173659 CTAGCAGGCCTCGTGCTGGTGATAAATTTAGGTTTATAC
1 CTAGCAGGCCTCGTACCGGTGATAAATTCAGGTTTATAC
*
63173698 CTAGCAGGCCTCGTACCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTACCGGTGATAAATTCAGGTTTATAC
63173737 CTAGCAGGC
1 CTAGCAGGC
63173746 TAATTGCCGG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (39 bp):
CTAGCAGGCCTCGTACCGGTGATAAATTCAGGTTTATAC
Found at i:63174039 original size:26 final size:26
Alignment explanation
Indices: 63173978--63174030 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
63173968 ATATGATTAT
63173978 GATCATTGAAATTATATGTCAATGCA
1 GATCATTGAAATTATATGTCAATGCA
*
63174004 GATCATTGAAATTATATGTGAATGCA
1 GATCATTGAAATTATATGTCAATGCA
63174030 G
1 G
63174031 TGATCTGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (26 bp):
GATCATTGAAATTATATGTCAATGCA
Found at i:63176530 original size:43 final size:45
Alignment explanation
Indices: 63176461--63176549 Score: 137
Period size: 43 Copynumber: 2.0 Consensus size: 45
63176451 GGACTATATG
*
63176461 ATCTGAGCTTATTGAGTTATGGTCTGAGTTCAGGATATATGTGAC
1 ATCTGAGCTTATTGAGTTATGATCTGAGTTCAGGATATATGTGAC
* *
63176506 ATCTGAGC-T-TTGAGTTGTGATCTGAGTTCAGGATGTATGTGAC
1 ATCTGAGCTTATTGAGTTATGATCTGAGTTCAGGATATATGTGAC
63176549 A
1 A
63176550 CATGTTTTGG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 32 0.78
44 1 0.02
45 8 0.20
ACGTcount: A:0.24, C:0.11, G:0.28, T:0.37
Consensus pattern (45 bp):
ATCTGAGCTTATTGAGTTATGATCTGAGTTCAGGATATATGTGAC
Found at i:63190298 original size:18 final size:18
Alignment explanation
Indices: 63190277--63190311 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63190267 GATAATTAAA
* *
63190277 AATAAAATTATAAAATTT
1 AATAAAAATAAAAAATTT
63190295 AATAAAAATAAAAAATT
1 AATAAAAATAAAAAATT
63190312 AGTTTTAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATAAAAATAAAAAATTT
Found at i:63196736 original size:80 final size:80
Alignment explanation
Indices: 63196652--63196800 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
63196642 TATGGTAACC
* * * *
63196652 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
63196716 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
63196732 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
63196797 CCGG
66 CCGG
63196801 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:63196742 original size:40 final size:38
Alignment explanation
Indices: 63196693--63196800 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
63196683 ATCACGATTT
*
63196693 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
63196733 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
63196773 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
63196801 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:63204763 original size:38 final size:37
Alignment explanation
Indices: 63204714--63204821 Score: 121
Period size: 38 Copynumber: 2.8 Consensus size: 37
63204704 ATAACCACGT
*
63204714 GCACAAATGCCTTCGGGTCTTAGCCCGGATAG-AATCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGCAA-CTA
*
63204752 GCACGAATGCCTTCGGGTCTTAGCCC-GATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA--TAGCAACTA
*
63204791 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
63204822 TAATTTCCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
37 2 0.03
38 29 0.48
39 27 0.44
40 3 0.05
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (37 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGCAACTA
Found at i:63210526 original size:30 final size:30
Alignment explanation
Indices: 63210490--63210546 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
63210480 TCATAAACAC
63210490 GAAAAATAATATTTAAATATTTTTCTACAT
1 GAAAAATAATATTTAAATATTTTTCTACAT
63210520 GAAAAATAATATTTAAATATTTTTCTA
1 GAAAAATAATATTTAAATATTTTTCTA
63210547 ACTCGAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (30 bp):
GAAAAATAATATTTAAATATTTTTCTACAT
Found at i:63212809 original size:123 final size:123
Alignment explanation
Indices: 63212590--63212928 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
63212580 GAATTATGTG
*
63212590 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
63212655 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
63212713 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
63212778 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
63212836 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
63212901 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
63212929 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:63212952 original size:40 final size:40
Alignment explanation
Indices: 63212897--63213140 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
63212887 TGAATGATAC
* * * * **
63212897 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
63212937 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
63212977 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
63213017 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
63213057 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
63213097 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
63213137 CCGG
1 CCGG
63213141 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:63220390 original size:40 final size:40
Alignment explanation
Indices: 63220193--63220396 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 40
63220183 TGAATGATAC
* * * * **
63220193 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * * **
63220233 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
63220273 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
63220313 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * **
63220353 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
63220393 CCGG
1 CCGG
63220397 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
Found at i:63222216 original size:25 final size:23
Alignment explanation
Indices: 63222176--63222223 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
63222166 TGCATTATGG
63222176 AAGGAAAATAAAGAAATGAAAAAAA
1 AAGGAAAATAAAGAAA--AAAAAAA
* *
63222201 AAGGAAAATGATGAAAAAAAAAA
1 AAGGAAAATAAAGAAAAAAAAAA
63222224 GAGTGTGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
25 14 0.67
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (23 bp):
AAGGAAAATAAAGAAAAAAAAAA
Found at i:63223544 original size:29 final size:29
Alignment explanation
Indices: 63223511--63223641 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
63223501 GTGACGAGAT
63223511 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
63223540 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
63223569 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
63223598 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
63223627 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
63223642 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:63231605 original size:29 final size:29
Alignment explanation
Indices: 63231572--63231702 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
63231562 GTGACGAGAT
63231572 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
63231601 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
63231630 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
63231659 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
63231688 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
63231703 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:63235180 original size:43 final size:42
Alignment explanation
Indices: 63235132--63235286 Score: 138
Period size: 43 Copynumber: 3.6 Consensus size: 42
63235122 AGTTCGTACA
* *
63235132 ATGCCAACTTTCCAGACGTGGTCTTACA-TATAATCAAATATCG
1 ATGCCAACTTCCCAGACGTGGTCTTACACGA-AATCAAATA-CG
* *
63235175 ATGCC-ACTATCCCAGACAG-GGTCTTAGACGAAATCAAGTACG
1 ATGCCAACT-TCCCAGAC-GTGGTCTTACACGAAATCAAATACG
* *
63235217 ATGCTAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACTTCCCAGACGTGGTCTTACACG-AAATCA-AA-TACG
* * *
63235261 ATGCTAACATCCCAGATGTGGTCTTA
1 ATGCCAACTTCCCAGACGTGGTCTTA
63235287 TAAGTCGATG
Statistics
Matches: 94, Mismatches: 10, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 36 0.38
44 29 0.31
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
ATGCCAACTTCCCAGACGTGGTCTTACACGAAATCAAATACG
Found at i:63235232 original size:42 final size:43
Alignment explanation
Indices: 63235143--63235286 Score: 147
Period size: 44 Copynumber: 3.3 Consensus size: 43
63235133 TGCCAACTTT
* *
63235143 CCAGACGTGGTCTTACA--TATAATCAAATATCGATGC-CACTATC
1 CCAGACGTGGTCTTACACGTA-AATCAAA-GTCGATGCTAAC-ATC
* *
63235186 CCAGACAG-GGTCTTAGACG-AAATC-AAGTACGATGCTAACGTC
1 CCAGAC-GTGGTCTTACACGTAAATCAAAGT-CGATGCTAACATC
63235228 CCAGACGTGGTCTTACACGTAAATCATAAGTCGATGCTAACATC
1 CCAGACGTGGTCTTACACGTAAATCA-AAGTCGATGCTAACATC
*
63235272 CCAGATGTGGTCTTA
1 CCAGACGTGGTCTTA
63235287 TAAGTCGATG
Statistics
Matches: 85, Mismatches: 7, Indels: 17
0.78 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 26 0.31
43 25 0.29
44 28 0.33
45 4 0.05
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (43 bp):
CCAGACGTGGTCTTACACGTAAATCAAAGTCGATGCTAACATC
Found at i:63235295 original size:33 final size:33
Alignment explanation
Indices: 63235253--63235319 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
63235243 CACGTAAATC
63235253 ATAAGTCGATGCTAACATCCCAGATGTGGTCTT
1 ATAAGTCGATGCTAACATCCCAGATGTGGTCTT
63235286 ATAAGTCGATGCTAACATCCCAGATGTGGTCTT
1 ATAAGTCGATGCTAACATCCCAGATGTGGTCTT
63235319 A
1 A
63235320 CACGAAAACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (33 bp):
ATAAGTCGATGCTAACATCCCAGATGTGGTCTT
Found at i:63237153 original size:19 final size:20
Alignment explanation
Indices: 63237129--63237166 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
63237119 GGTACCACCA
63237129 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
63237148 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
63237167 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:63237457 original size:45 final size:46
Alignment explanation
Indices: 63237394--63237557 Score: 178
Period size: 45 Copynumber: 3.6 Consensus size: 46
63237384 CGCCCCTAAG
* *
63237394 TGAACTCGG-CTCAACTCAATGAGCTCGAGC-GTTGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGAGCAGTTGCATCCATAAA
* *
63237438 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTC-GA-G-C-AGTTGCATCCATAAA
* * * *
63237485 CGAACTCGGACTCAACTCAACGAGTTGGA-CATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGAGCAGTTGCATCCATAAA
63237530 TGAACTCGGACTCAACTCAACGAGTTCG
1 TGAACTCGGACTCAACTCAACGAGTTCG
63237558 GATGCTCAAC
Statistics
Matches: 99, Mismatches: 12, Indels: 17
0.77 0.09 0.13
Matches are distributed among these distances:
42 6 0.06
43 2 0.02
44 10 0.10
45 41 0.41
46 4 0.04
47 27 0.27
48 2 0.02
49 1 0.01
50 6 0.06
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGAGCAGTTGCATCCATAAA
Found at i:63237559 original size:92 final size:91
Alignment explanation
Indices: 63237395--63237562 Score: 266
Period size: 92 Copynumber: 1.8 Consensus size: 91
63237385 GCCCCTAAGT
*
63237395 GAACTCGGCTCAACTCAATGAGCTCGAGCGTTGCATCCATAAATGAACTCGGACTCAACTCAACG
1 GAACTCGGCTCAACTCAACGAGCTCGAGCGTTGCATCCATAAATGAACTCGGACTCAACTCAACG
63237460 AGTTCGGATGCCTAGTTACATCTCAC
66 AGTTCGGATGCCTAGTTACATCTCAC
* * * *
63237486 GAACTCGGACTCAACTCAACGAGTTGGA-CATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGG-CTCAACTCAACGAGCTCGAGC-GTTGCATCCATAAATGAACTCGGACTCAACTCAA
63237550 CGAGTTCGGATGC
64 CGAGTTCGGATGC
63237563 TCAACCATCC
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
91 9 0.13
92 61 0.87
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (91 bp):
GAACTCGGCTCAACTCAACGAGCTCGAGCGTTGCATCCATAAATGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:63250180 original size:83 final size:83
Alignment explanation
Indices: 63250041--63250207 Score: 325
Period size: 83 Copynumber: 2.0 Consensus size: 83
63250031 AGCATCCTGT
*
63250041 AGCTCAGACCTGATGATCGGGTTGGACGATGGGTGTTACAAAAAGTAAGTATGATTTTATGAAAC
1 AGCTCAGACCAGATGATCGGGTTGGACGATGGGTGTTACAAAAAGTAAGTATGATTTTATGAAAC
63250106 ATGGTTTGTAATATCTGG
66 ATGGTTTGTAATATCTGG
63250124 AGCTCAGACCAGATGATCGGGTTGGACGATGGGTGTTACAAAAAGTAAGTATGATTTTATGAAAC
1 AGCTCAGACCAGATGATCGGGTTGGACGATGGGTGTTACAAAAAGTAAGTATGATTTTATGAAAC
63250189 ATGGTTTGTAATATCTGG
66 ATGGTTTGTAATATCTGG
63250207 A
1 A
63250208 TGGATTAAAA
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.31
Consensus pattern (83 bp):
AGCTCAGACCAGATGATCGGGTTGGACGATGGGTGTTACAAAAAGTAAGTATGATTTTATGAAAC
ATGGTTTGTAATATCTGG
Found at i:63259794 original size:20 final size:20
Alignment explanation
Indices: 63259746--63259794 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
63259736 CCATGTTTCC
*
63259746 ATTAAAAAACCTTCTTAATA
1 ATTAAAAACCCTTCTTAATA
63259766 ATTAAAAACCCTTCTTAATA
1 ATTAAAAACCCTTCTTAATA
63259786 ATTAAAAAC
1 ATTAAAAAC
63259795 TTATACCCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTAAAAACCCTTCTTAATA
Found at i:63260356 original size:6 final size:6
Alignment explanation
Indices: 63260326--63260456 Score: 81
Period size: 6 Copynumber: 21.3 Consensus size: 6
63260316 AAGAAACATT
* * * * *
63260326 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAAA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
63260375 ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGA ATCAAA
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA
* *
63260424 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
63260457 GTGAATGCAA
Statistics
Matches: 94, Mismatches: 20, Indels: 22
0.69 0.15 0.16
Matches are distributed among these distances:
5 5 0.05
6 78 0.83
7 8 0.09
8 3 0.03
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Done.