Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 213 of 378
Found at i:63260376 original size:37 final size:37
Alignment explanation
Indices: 63260335--63260456 Score: 139
Period size: 37 Copynumber: 3.5 Consensus size: 37
63260325 TATCAGAACT
* *
63260335 AGAATCAAAATGAGAATCAGAATCAAAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATTAGGTGAC
63260372 AG------AATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATTAGGTGAC
* * * * *
63260403 AGAATCAGAATCAGAATCAAAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATTAGGTGAC
63260440 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
63260457 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
31 29 0.40
37 43 0.60
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATTAGGTGAC
Found at i:63260385 original size:31 final size:31
Alignment explanation
Indices: 63260347--63260425 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
63260337 AATCAAAATG
63260347 AGAATCAGAATCAAAATTAGGTGACAGAATC
1 AGAATCAGAATCAAAATTAGGTGACAGAATC
*
63260378 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAAAATTAGGTGACAGAATC
63260409 AGAATCAGAATCAAAAT
1 AGAATCAGAATCAAAAT
63260426 CAGTATCAGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAAAATTAGGTGACAGAATC
Found at i:63260623 original size:27 final size:26
Alignment explanation
Indices: 63260575--63260634 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
63260565 GCGAGGCTGC
*
63260575 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
63260602 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
63260628 CAGATAT
1 CAGATAT
63260635 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63261106 original size:27 final size:27
Alignment explanation
Indices: 63260969--63261109 Score: 167
Period size: 27 Copynumber: 5.3 Consensus size: 27
63260959 AGGGTAAAAT
* * * *
63260969 GGTAATTTTACCCCACAAGGGTA-TCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63260995 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63261022 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
63261049 GGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63261076 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
63261103 GGTAATT
1 GGTAATT
63261110 TTGTAAATCA
Statistics
Matches: 99, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 18 0.18
27 81 0.82
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:63261175 original size:27 final size:27
Alignment explanation
Indices: 63261131--63261269 Score: 140
Period size: 27 Copynumber: 5.2 Consensus size: 27
63261121 GGGAAAACGA
** * *
63261131 TAATTTTGTAAATCGAGGGTACTTT-GG
1 TAATTTTACAAATTGAGGGTA-TTTCAG
*
63261158 TAATTTTACAAGTTGAGGGTATTTCAG
1 TAATTTTACAAATTGAGGGTATTTCAG
*
63261185 TAATTTTACAAATCGA-GGTATTTCAG
1 TAATTTTACAAATTGAGGGTATTTCAG
* * *
63261211 TAATTTTGCAAACTGAGAGTATTTCAG
1 TAATTTTACAAATTGAGGGTATTTCAG
* **
63261238 TCATTTTACAAATT-AGGGTATTTTGG
1 TAATTTTACAAATTGAGGGTATTTCAG
63261264 TAATTT
1 TAATTT
63261270 GGTAAACTAA
Statistics
Matches: 92, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
26 40 0.43
27 52 0.57
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (27 bp):
TAATTTTACAAATTGAGGGTATTTCAG
Found at i:63261214 original size:53 final size:54
Alignment explanation
Indices: 63261131--63261269 Score: 149
Period size: 53 Copynumber: 2.6 Consensus size: 54
63261121 GGGAAAACGA
** * ** *
63261131 TAATTTTGTAAATCGAGGGTACTTTGGTAATTTTACAAGTTGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTACTTTAGTAATTTTACAAACTGAGAGTATTTCAG
*
63261185 TAATTTTACAAATCGA-GGTA-TTTCAGTAATTTTGCAAACTGAGAGTATTTCAG
1 TAATTTTACAAATCGAGGGTACTTT-AGTAATTTTACAAACTGAGAGTATTTCAG
* * * *
63261238 TCATTTTACAAAT-TAGGGTATTTTGGTAATTT
1 TAATTTTACAAATCGAGGGTACTTTAGTAATTT
63261270 GGTAAACTAA
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
52 4 0.06
53 51 0.71
54 17 0.24
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (54 bp):
TAATTTTACAAATCGAGGGTACTTTAGTAATTTTACAAACTGAGAGTATTTCAG
Found at i:63261277 original size:53 final size:51
Alignment explanation
Indices: 63261146--63261285 Score: 131
Period size: 53 Copynumber: 2.7 Consensus size: 51
63261136 TTGTAAATCG
* * *
63261146 AGGGTACTTTGGTAATTT-TACAAGTTGAGGGTATTTCAGTAATTTTACAAAT
1 AGGGTATTTTGGTAATTTGTA-AA-CTGAGAGTATTTCAGTAATTTTACAAAT
* ** * *
63261198 CGAGGTATTTCAGTAATTTTGCAAACTGAGAGTATTTCAGTCATTTTACAAATT
1 AG-GGTATTTTGGTAA-TTTGTAAACTGAGAGTATTTCAGTAATTTTACAAA-T
*
63261252 AGGGTATTTTGGTAATTTGGTAAACT-AAAGTATT
1 AGGGTATTTTGGTAATTT-GTAAACTGAGAGTATT
63261286 CTAAACAGCG
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
52 11 0.16
53 51 0.73
54 7 0.10
55 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (51 bp):
AGGGTATTTTGGTAATTTGTAAACTGAGAGTATTTCAGTAATTTTACAAAT
Found at i:63261477 original size:17 final size:18
Alignment explanation
Indices: 63261455--63261489 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
63261445 AACTTATCCA
*
63261455 ATTGGGCTCATA-AGCCC
1 ATTGGGCCCATATAGCCC
63261472 ATTGGGCCCATATAGCCC
1 ATTGGGCCCATATAGCCC
63261490 CTTTCAGCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (18 bp):
ATTGGGCCCATATAGCCC
Found at i:63266990 original size:40 final size:40
Alignment explanation
Indices: 63266882--63266991 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
63266872 ATTGAATGAT
* * * * *
63266882 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * * *
63266922 ATCCGAGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
63266962 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
63266992 AAATTGTGAA
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:63270221 original size:17 final size:17
Alignment explanation
Indices: 63270199--63270252 Score: 108
Period size: 17 Copynumber: 3.2 Consensus size: 17
63270189 TAGGTAAATC
63270199 CTTAATGCACCCATATT
1 CTTAATGCACCCATATT
63270216 CTTAATGCACCCATATT
1 CTTAATGCACCCATATT
63270233 CTTAATGCACCCATATT
1 CTTAATGCACCCATATT
63270250 CTT
1 CTT
63270253 CGGGAGGCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 37 1.00
ACGTcount: A:0.28, C:0.30, G:0.06, T:0.37
Consensus pattern (17 bp):
CTTAATGCACCCATATT
Found at i:63273858 original size:105 final size:105
Alignment explanation
Indices: 63273649--63273851 Score: 379
Period size: 105 Copynumber: 1.9 Consensus size: 105
63273639 TGCTAGTAAA
*
63273649 TTGATAGAACAAACAATGTGACTGAATAAGTTATAACTGTAACACCCCTAACTTGTAACCATCGT
1 TTGATAGAACAAACAATGTGACTGAATAAGTTATAACTGTAACACCCCTAACCTGTAACCATCGT
63273714 CGAAATAGGTTAAGAGGCATTACCGTACACATAACTCAAT
66 CGAAATAGGTTAAGAGGCATTACCGTACACATAACTCAAT
*
63273754 TTGATAGAACAAACAATGTGACTGAATAAGTTATAACTGTAACACCCCTAACCTGTAACCATTGT
1 TTGATAGAACAAACAATGTGACTGAATAAGTTATAACTGTAACACCCCTAACCTGTAACCATCGT
*
63273819 CGAAATAGGTTAAGAGGCATTACCTTACACATA
66 CGAAATAGGTTAAGAGGCATTACCGTACACATA
63273852 TTTCAATCAA
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 95 1.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (105 bp):
TTGATAGAACAAACAATGTGACTGAATAAGTTATAACTGTAACACCCCTAACCTGTAACCATCGT
CGAAATAGGTTAAGAGGCATTACCGTACACATAACTCAAT
Found at i:63276768 original size:40 final size:39
Alignment explanation
Indices: 63276686--63276870 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 39
63276676 TCGAATGATG
* * *
63276686 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
63276725 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63276765 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
63276805 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
63276846 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
63276871 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 11 0.08
40 111 0.85
41 8 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63276888 original size:80 final size:80
Alignment explanation
Indices: 63276719--63276903 Score: 202
Period size: 80 Copynumber: 2.3 Consensus size: 80
63276709 GTGCTAAGTG
**
63276719 ACTATATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTATATCCGGGTTAAGATCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
***
63276784 GCATTTGTGTGAGTT
66 GCATTTGAACGAGTT
* * * *
63276799 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCG
1 ACTATATCCGGGTTAAGAT-CCGAAGGCATTCGTGCGAGTTACTA-AATCCGGACTAAGAT-CCG
63276861 AAGGCATTTGAACGAG-T
63 AAGGCATTTGAACGAGTT
63276878 AGCTATATCC-GGTTAA-ACTCCGAAGG
1 A-CTATATCCGGGTTAAGA-TCCGAAGG
63276904 TACGTGATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
79 17 0.19
80 70 0.79
81 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (80 bp):
ACTATATCCGGGTTAAGATCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
GCATTTGAACGAGTT
Found at i:63284904 original size:40 final size:40
Alignment explanation
Indices: 63284743--63284897 Score: 267
Period size: 40 Copynumber: 3.9 Consensus size: 40
63284733 ATTCGGATTG
63284743 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
63284782 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
63284822 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
63284862 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
63284898 AGCTATATCT
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.12
40 95 0.88
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:63286390 original size:48 final size:47
Alignment explanation
Indices: 63286330--63286549 Score: 187
Period size: 46 Copynumber: 4.7 Consensus size: 47
63286320 ACAACAAGCT
* * * *
63286330 GATGCCATGTCCCAAACAGGTCTTACTCTAGCTTGTATATCTCAAGGCT
1 GATG-CATGTCCCAGACAAGTCTTACACTAGC-TGTATATCTCAAGGCC
* * ** *
63286379 GATGCATGTCCCAGACAAGTTTTACACTAGCTCT-CGTCTCAATGCC
1 GATGCATGTCCCAGACAAGTCTTACACTAGCTGTATATCTCAAGGCC
* * *
63286425 GATGCATGTCCTAGACATGTCTTACACTAGCCTGTATATCTCGAGGCC
1 GATGCATGTCCCAGACAAGTCTTACACTAG-CTGTATATCTCAAGGCC
** * * * *
63286473 GATGCATGTCCCAGACGTGTCTTACATTGGCTCTCATAATGT---GGCC
1 GATGCATGTCCCAGACAAGTCTTACACTAGCTGT-AT-ATCTCAAGGCC
* *
63286519 GATGCATGTCCTAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACAAGTCTTACACTAGC
63286550 ACACATATCA
Statistics
Matches: 140, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
46 66 0.47
47 8 0.06
48 59 0.42
49 7 0.05
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (47 bp):
GATGCATGTCCCAGACAAGTCTTACACTAGCTGTATATCTCAAGGCC
Found at i:63286433 original size:46 final size:48
Alignment explanation
Indices: 63286285--63286549 Score: 174
Period size: 46 Copynumber: 5.7 Consensus size: 48
63286275 CTATCAGTGT
* * * *
63286285 CGATGTCATGTCCCAGACAAGTCTTATACT-GACAC-ACA--ACAA-GC
1 CGATG-CATGTCCCAGACAAGTCTTACACTAGCCTCTACATCTCAAGGC
* * * * * * *
63286329 TGATGCCATGTCCCAAACAGGTCTTACTCTAGCTTGTATATCTCAAGGC
1 CGATG-CATGTCCCAGACAAGTCTTACACTAGCCTCTACATCTCAAGGC
* * * *
63286378 TGATGCATGTCCCAGACAAGTTTTACACTAG-CTCT-CGTCTCAATGC
1 CGATGCATGTCCCAGACAAGTCTTACACTAGCCTCTACATCTCAAGGC
* * * * *
63286424 CGATGCATGTCCTAGACATGTCTTACACTAGCCTGTATATCTCGAGGC
1 CGATGCATGTCCCAGACAAGTCTTACACTAGCCTCTACATCTCAAGGC
** * * *
63286472 CGATGCATGTCCCAGACGTGTCTTACATTGGCTCTCATA-ATGT---GGC
1 CGATGCATGTCCCAGACAAGTCTTACACTAGC-CTC-TACATCTCAAGGC
* *
63286518 CGATGCATGTCCTAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACAAGTCTTACACTAGC
63286550 ACACATATCA
Statistics
Matches: 172, Mismatches: 40, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
44 24 0.14
45 1 0.01
46 68 0.40
47 5 0.03
48 60 0.35
49 12 0.07
50 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCATGTCCCAGACAAGTCTTACACTAGCCTCTACATCTCAAGGC
Found at i:63286455 original size:94 final size:93
Alignment explanation
Indices: 63286330--63286549 Score: 264
Period size: 94 Copynumber: 2.3 Consensus size: 93
63286320 ACAACAAGCT
* * * * * *
63286330 GATGCCATGTCCCAAACAGGTCTTACTCTAGCTTGTATATCTCAAGGCTGATGCATGTCCCAGAC
1 GATG-CATGTCCTAGACATGTCTTACACTAGCCTGTATATCTCAAGGCCGATGCATGTCCCAGAC
* *
63286395 AAGTTTTACACTAGCTCTCGTCTCAA-T-GCC
65 AAGTCTTACACTAGCTCTC--AT-AAGTGGCC
* *
63286425 GATGCATGTCCTAGACATGTCTTACACTAGCCTGTATATCTCGAGGCCGATGCATGTCCCAGACG
1 GATGCATGTCCTAGACATGTCTTACACTAGCCTGTATATCTCAAGGCCGATGCATGTCCCAGACA
* * *
63286490 TGTCTTACATTGGCTCTCATAATGTGGCC
66 AGTCTTACACTAGCTCTCATAA-GTGGCC
63286519 GATGCATGTCCTAGACATGTCTTACACTAGC
1 GATGCATGTCCTAGACATGTCTTACACTAGC
63286550 ACACATATCA
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
91 2 0.02
92 1 0.01
93 1 0.01
94 101 0.93
95 4 0.04
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (93 bp):
GATGCATGTCCTAGACATGTCTTACACTAGCCTGTATATCTCAAGGCCGATGCATGTCCCAGACA
AGTCTTACACTAGCTCTCATAAGTGGCC
Found at i:63288289 original size:68 final size:65
Alignment explanation
Indices: 63288217--63288387 Score: 168
Period size: 66 Copynumber: 2.6 Consensus size: 65
63288207 CATCATGTGT
* * *
63288217 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATAC-AGTGAAGGACACCA
63288280 TGTAG
61 TGTAG
** * *
63288285 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCAGGTGAAGGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACA-GTGAAGGACACCATGTA
63288350 G
65 G
* * * *
63288351 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
63288388 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
63 1 0.01
64 23 0.26
65 18 0.20
66 34 0.38
68 13 0.15
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACAGTGAAGGACACCATGTAG
Found at i:63288322 original size:64 final size:64
Alignment explanation
Indices: 63288241--63288423 Score: 203
Period size: 66 Copynumber: 2.8 Consensus size: 64
63288231 AGACATTATG
* * *
63288241 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
63288305 ATGTAGCTAGGTCGCATGCGTGGTTC-AGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63288369 AA
63 AA
* * *
63288371 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
63288424 CGAACTCTAT
Statistics
Matches: 99, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 24 0.24
65 21 0.21
66 32 0.32
67 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63292669 original size:68 final size:66
Alignment explanation
Indices: 63292597--63292768 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
63292587 CATCATGTGT
* * * *
63292597 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
63292660 TGTAG
62 TGTAG
** * *
63292665 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
63292730 AG
65 AG
* * * *
63292732 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
63292769 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:63292702 original size:64 final size:64
Alignment explanation
Indices: 63292621--63292804 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
63292611 AGACATTATG
* * *
63292621 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
63292685 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63292750 AA
63 AA
* * *
63292752 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
63292805 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63307512 original size:48 final size:48
Alignment explanation
Indices: 63307452--63307550 Score: 128
Period size: 48 Copynumber: 2.1 Consensus size: 48
63307442 TGCCAAAAAA
** * *
63307452 ATAGCCGAAGCTATATCAATCTTGTACACTAAGTGCCAATATGTATAT
1 ATAGCCGAAGCTATATCAATCACGCACACTAAGTGCCAATATATATAT
* *
63307500 ATAGCC-AGAGCTATCTCAATCACGCACACTAAGTGCCAATATATGTAT
1 ATAGCCGA-AGCTATATCAATCACGCACACTAAGTGCCAATATATATAT
63307548 ATA
1 ATA
63307551 ACTGAAGTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
47 1 0.02
48 43 0.98
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.28
Consensus pattern (48 bp):
ATAGCCGAAGCTATATCAATCACGCACACTAAGTGCCAATATATATAT
Found at i:63316621 original size:79 final size:82
Alignment explanation
Indices: 63316481--63316665 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
63316471 TCGAATGATG
* * *
63316481 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
63316545 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
63316561 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
63316623 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
63316641 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63316666 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:63316673 original size:40 final size:40
Alignment explanation
Indices: 63316482--63316673 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
63316472 CGAATGATGT
* * * * *
63316482 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
63316522 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
63316562 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
63316601 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
63316641 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
63316674 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:63324612 original size:39 final size:40
Alignment explanation
Indices: 63324512--63324702 Score: 185
Period size: 39 Copynumber: 4.8 Consensus size: 40
63324502 TCGAATGATG
* * *
63324512 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
63324552 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63324592 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
63324631 CCCGGGTTAAGTCCCGAAGGCATTCG-GCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
** *
63324671 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
63324703 CGTTATATCC
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 63 0.51
40 54 0.44
41 7 0.06
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63324652 original size:79 final size:81
Alignment explanation
Indices: 63324512--63324695 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
63324502 TCGAATGATG
* * *
63324512 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
63324576 CGTGCGAGTTAATA-AA
66 CG-GCGAGTCAATATAA
* **
63324592 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
63324654 TCGGCGAGTCACTATAA
65 TCGGCGAGTCAATATAA
**
63324671 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63324696 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 18 0.20
79 54 0.60
80 18 0.20
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGGCGAGTCAATATAA
Found at i:63330945 original size:2 final size:2
Alignment explanation
Indices: 63330908--63330933 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
63330898 TTTTTTTCAT
63330908 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
63330934 AATGAGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:63334928 original size:21 final size:21
Alignment explanation
Indices: 63334903--63334945 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
63334893 ACCTTTTAAT
63334903 TATTGCTTTCCTCAATCTAAA
1 TATTGCTTTCCTCAATCTAAA
63334924 TATTGCTTTCCTCAATCTAAA
1 TATTGCTTTCCTCAATCTAAA
63334945 T
1 T
63334946 TTTCAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44
Consensus pattern (21 bp):
TATTGCTTTCCTCAATCTAAA
Found at i:63336344 original size:37 final size:37
Alignment explanation
Indices: 63336303--63336374 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
63336293 TGCCTAAAAA
**
63336303 AGAGGAGAAGATAATCTTGGGTTGTTGAAAAAAGAAC
1 AGAGGAGAAGATAATCTCAGGTTGTTGAAAAAAGAAC
63336340 AGAGGAGAAGATAATCTCAGGTTGTTGAAAAAAGA
1 AGAGGAGAAGATAATCTCAGGTTGTTGAAAAAAGA
63336375 TTTTAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.44, C:0.06, G:0.29, T:0.21
Consensus pattern (37 bp):
AGAGGAGAAGATAATCTCAGGTTGTTGAAAAAAGAAC
Found at i:63338010 original size:29 final size:29
Alignment explanation
Indices: 63337974--63338136 Score: 202
Period size: 29 Copynumber: 5.6 Consensus size: 29
63337964 AATAAACGAT
***
63337974 CTCGCACACTTAGTGCCATGCGATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
63338003 CTCGCACACATAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* *
63338032 TTTGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
63338061 TTCGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* ** *
63338090 TTCGCACACTTAGTGCCATA-CCTTCCAAG
1 CTCGCACACTTAGTGCCATATAATT-TAAG
*
63338119 CCCGCACACTTAGTGCCA
1 CTCGCACACTTAGTGCCA
63338137 ATCTTGTCAC
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
28 2 0.02
29 118 0.98
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CTCGCACACTTAGTGCCATATAATTTAAG
Found at i:63341554 original size:24 final size:24
Alignment explanation
Indices: 63341382--63341552 Score: 288
Period size: 24 Copynumber: 7.1 Consensus size: 24
63341372 GCAAAGACCA
*
63341382 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
63341406 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
63341430 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
63341454 TATGGCACTATGTGTGCGATACAC
1 TATGGCACTATGTGTGCGATTTAC
63341478 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
63341502 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
63341526 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
63341550 TAT
1 TAT
63341553 AGTCACATTC
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 140 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:63349479 original size:24 final size:24
Alignment explanation
Indices: 63349307--63349477 Score: 288
Period size: 24 Copynumber: 7.1 Consensus size: 24
63349297 GCAAAGACCA
*
63349307 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
63349331 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
63349355 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
63349379 TATGGCACTATGTGTGCGATACAC
1 TATGGCACTATGTGTGCGATTTAC
63349403 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
63349427 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
63349451 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
63349475 TAT
1 TAT
63349478 AGTCACATTC
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 140 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:63360843 original size:37 final size:37
Alignment explanation
Indices: 63360801--63360881 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
63360791 CGGGGTTTTA
* *
63360801 ACCCGGATAAAATCTCCACACGTGGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
*
63360838 ACCCGGACAGAATCTCCACACGTAGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
63360875 ACCCGGA
1 ACCCGGA
63360882 ATATATTTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (37 bp):
ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
Found at i:63361155 original size:48 final size:48
Alignment explanation
Indices: 63361007--63361165 Score: 185
Period size: 48 Copynumber: 3.3 Consensus size: 48
63360997 GATCATTCGG
* * * *
63361007 CCACAATATACACATCTCCTACGTAT-TGCACATTAGCCATTCGGCTTTA
1 CCAC-ATATACATATCTCATACATATCT-CATATTAGCCATTCGGCTTTA
* * * *
63361056 CCAAATATACATCTCTCATACATATTTCATATTAGCCATTTGGCTTTA
1 CCACATATACATATCTCATACATATCTCATATTAGCCATTCGGCTTTA
* *
63361104 CCACATATACATATCTCATACATGTCTCATATTAGCCATTCAGCTTTA
1 CCACATATACATATCTCATACATATCTCATATTAGCCATTCGGCTTTA
* *
63361152 CCACACATATATAT
1 CCACATATACATAT
63361166 ATTTACCTTG
Statistics
Matches: 94, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
48 90 0.96
49 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
CCACATATACATATCTCATACATATCTCATATTAGCCATTCGGCTTTA
Found at i:63362301 original size:2 final size:2
Alignment explanation
Indices: 63362294--63362324 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
63362284 AATTCATTAT
63362294 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
63362325 CTAAACACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63365018 original size:47 final size:47
Alignment explanation
Indices: 63364948--63365526 Score: 987
Period size: 47 Copynumber: 12.3 Consensus size: 47
63364938 GAGATATATA
* *
63364948 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
63364995 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
63365042 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
63365089 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
63365136 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
63365183 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
63365230 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
63365277 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
63365324 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
63365371 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
63365418 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
63365465 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
63365512 TATAAATGTGATAAG
1 TATATATGTGATAAG
63365527 TCCCGAAGGG
Statistics
Matches: 506, Mismatches: 26, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 506 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:63365723 original size:36 final size:37
Alignment explanation
Indices: 63365647--63365723 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
63365637 AGCTCTAAAA
* *
63365647 CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
1 CCGATGACCACGGGTGGAGATTATGTCCGGGTAAGAC
* *
63365684 CCGATGACCACGGGTGGAGATTTTGT-CGGGTAAGCC
1 CCGATGACCACGGGTGGAGATTATGTCCGGGTAAGAC
63365720 CCGA
1 CCGA
63365724 ACTAAAGGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 13 0.36
37 23 0.64
ACGTcount: A:0.22, C:0.22, G:0.34, T:0.22
Consensus pattern (37 bp):
CCGATGACCACGGGTGGAGATTATGTCCGGGTAAGAC
Found at i:63367716 original size:25 final size:25
Alignment explanation
Indices: 63367682--63367733 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
63367672 TGCTAGTGAT
63367682 ATAACCGGACTAAGTTCCGAAGAGC
1 ATAACCGGACTAAGTTCCGAAGAGC
63367707 ATAACCGGACTAAGTTCCGAAGAGC
1 ATAACCGGACTAAGTTCCGAAGAGC
63367732 AT
1 AT
63367734 TCATGCTAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (25 bp):
ATAACCGGACTAAGTTCCGAAGAGC
Found at i:63367727 original size:65 final size:65
Alignment explanation
Indices: 63367646--63367773 Score: 238
Period size: 65 Copynumber: 2.0 Consensus size: 65
63367636 AGTGATATAT
* *
63367646 CCGGACTAAGTTCCGAAGAGTATTCGTGCTAGTGATATAACCGGACTAAGTTCCGAAGAGCATAA
1 CCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGATATAACCGGACTAAGTTCCGAAGAGCATAA
63367711 CCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGATATAACCGGACTAAGTTCCGAAGAGCAT
1 CCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGATATAACCGGACTAAGTTCCGAAGAGCAT
63367774 TCGTGCTAGT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (65 bp):
CCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGATATAACCGGACTAAGTTCCGAAGAGCATAA
Found at i:63368462 original size:40 final size:40
Alignment explanation
Indices: 63367707--63368429 Score: 1311
Period size: 40 Copynumber: 18.1 Consensus size: 40
63367697 TCCGAAGAGC
*
63367707 ATAACCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
63367747 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
63367787 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
*
63367827 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
*
63367867 ATAACCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
63367907 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
63367947 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
*
63367987 ATAACCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
*
63368027 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
63368067 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
* *
63368107 ATATCCAGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
63368147 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
* *
63368187 ATATCCGGACTAAGTTCCGAAGAGAATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
* * *
63368227 ATAACCAGACTAAGTTCCGAAGAGAATTCATGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
*
63368267 ATAATCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
63368307 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
63368347 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
* *
63368387 ATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
63368427 ATA
1 ATA
63368430 TTCGGGCGAA
Statistics
Matches: 658, Mismatches: 25, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 658 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (40 bp):
ATAACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
Found at i:63371671 original size:47 final size:47
Alignment explanation
Indices: 63371601--63372088 Score: 780
Period size: 47 Copynumber: 10.3 Consensus size: 47
63371591 ATGAGATATA
* *
63371601 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
63371648 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
63371695 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
63371742 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
63371789 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
63371836 TATATATGTGACAAGGCCTGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCT----AATGGCCGATGTGATGAATGTGAAAGTG
* *
63371887 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
63371934 TATATATGTGACAAGGCCTAATGGCC-ATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
63371980 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
63372027 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
63372074 TATAAATGTGATAAG
1 TATATATGTGATAAG
63372089 TCCCGAAGGG
Statistics
Matches: 414, Mismatches: 22, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
46 43 0.10
47 328 0.79
51 43 0.10
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:63372264 original size:37 final size:37
Alignment explanation
Indices: 63372205--63372287 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
63372195 CCGAGCTCTA
* *
63372205 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
63372242 AAGACCCGATGACCACGGGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
63372279 AAGCCCCGA
1 AAGACCCGA
63372288 ACTAAAGGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.33, T:0.20
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
Found at i:63391382 original size:46 final size:46
Alignment explanation
Indices: 63391306--63391524 Score: 144
Period size: 46 Copynumber: 4.7 Consensus size: 46
63391296 GGGGTAGGGT
* *
63391306 GCCGATGCCATATCCCAGATATGGTCTTACACTGACTATCATCTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCGTA
* * *
63391354 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAT-GTCTCGAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC-TATCATCTCGTA
* ** **
63391400 GCCGATGCATTTCCTGGACATGTCTTTTACT-AGC-ACTCATCTCG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTGA-CTA-TCATCTCGTA
* ** * * *
63391445 TGCCGATGCCATGTCCTAGACATGGTCTTACA-TAGGTTCTCATAAT-GTG
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACT-GACTATCAT-CTCGTA
* *
63391494 GTCGATGCATGTCCCAGACACGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
63391525 AGCCCACAAT
Statistics
Matches: 134, Mismatches: 24, Indels: 27
0.72 0.13 0.15
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 65 0.49
47 41 0.31
48 24 0.18
49 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTATCATCTCGTA
Found at i:63394747 original size:29 final size:29
Alignment explanation
Indices: 63394612--63394802 Score: 192
Period size: 29 Copynumber: 6.6 Consensus size: 29
63394602 GTGACGAGAT
*
63394612 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
*
63394641 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
*
63394670 TGGCACTAAGTGTGC-ATGCTGGAAATATT
1 TGGCACTAAGTGTGCGA-GCTGGAAATATA
* *
63394699 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* ** ***
63394728 CGGCACTGGGTGTGCGAGCTCGG-AGGGTA
1 TGGCACTAAGTGTGCGAGCT-GGAAATATA
** *
63394757 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
63394784 CGTGGCACTAAGTGTGCGA
1 --TGGCACTAAGTGTGCGA
63394803 AATCGAGTAG
Statistics
Matches: 138, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
27 2 0.01
28 1 0.01
29 132 0.96
30 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:63400969 original size:21 final size:20
Alignment explanation
Indices: 63400925--63400969 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
63400915 TATTTCATAC
* *
63400925 TTTGGCCCATTTTCTTTGTT
1 TTTGGCCCATTTTCGTTCTT
*
63400945 TTTGGCCCGTTTCTCGTTCTT
1 TTTGGCCCATTT-TCGTTCTT
63400966 TTTG
1 TTTG
63400970 CTTTCTTATG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.02, C:0.22, G:0.18, T:0.58
Consensus pattern (20 bp):
TTTGGCCCATTTTCGTTCTT
Found at i:63406446 original size:21 final size:21
Alignment explanation
Indices: 63406420--63406471 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
63406410 TTTTCAGTTA
*
63406420 TTTTAATTTCTTTGTTTTTAG
1 TTTTAATTTCTTAGTTTTTAG
**
63406441 TTTTAAATTT-TTAGTTTTTCT
1 TTTT-AATTTCTTAGTTTTTAG
63406462 TTTTAATTTC
1 TTTTAATTTC
63406472 ATGCTTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 5 0.19
21 16 0.62
22 5 0.19
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (21 bp):
TTTTAATTTCTTAGTTTTTAG
Found at i:63406890 original size:22 final size:22
Alignment explanation
Indices: 63406864--63406928 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 22
63406854 TAGAGTTCAA
63406864 ACTATATTCTACAAACATAAGT
1 ACTATATTCTACAAACATAAGT
*
63406886 ACTATA-AC--CAAAC-T-AG-
1 ACTATATTCTACAAACATAAGT
63406902 -CTATATTCTACAAA-ATAAGT
1 ACTATATTCTACAAACATAAGT
63406922 ACTATAT
1 ACTATAT
63406929 CTATATATAC
Statistics
Matches: 34, Mismatches: 2, Indels: 15
0.67 0.04 0.29
Matches are distributed among these distances:
15 5 0.15
16 1 0.03
17 2 0.06
18 6 0.18
19 7 0.21
21 7 0.21
22 6 0.18
ACGTcount: A:0.46, C:0.18, G:0.05, T:0.31
Consensus pattern (22 bp):
ACTATATTCTACAAACATAAGT
Found at i:63414045 original size:40 final size:40
Alignment explanation
Indices: 63413986--63414217 Score: 360
Period size: 40 Copynumber: 5.8 Consensus size: 40
63413976 CGGATGATAA
* *
63413986 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-T
* *
63414026 CCGGGCTAAG-CTCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCAAGTTACTATAT
*
63414066 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
63414106 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* *
63414146 CCGAGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
*
63414186 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT
63414218 AGTTATATTC
Statistics
Matches: 180, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 1 0.01
40 177 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
Found at i:63414509 original size:22 final size:21
Alignment explanation
Indices: 63414468--63414511 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
63414458 GAATGTGCAT
63414468 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
63414490 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
63414512 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:63422053 original size:40 final size:40
Alignment explanation
Indices: 63421994--63422218 Score: 373
Period size: 40 Copynumber: 5.6 Consensus size: 40
63421984 CGGATGATAA
* *
63421994 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
63422034 CCGGGCTAAG-CTCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATAT
63422074 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
63422114 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63422154 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63422194 CCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63422219 AGCAAGTAGT
Statistics
Matches: 176, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
39 1 0.01
40 173 0.98
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63422233 original size:120 final size:120
Alignment explanation
Indices: 63421994--63422250 Score: 369
Period size: 120 Copynumber: 2.1 Consensus size: 120
63421984 CGGATGATAA
*
63421994 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCTCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCTCCAAAGGCATTTG
* * * *
63422059 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66 TGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACTATAT
* *
63422114 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGCT-CCAAAGGCATT
*
63422177 TGTGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGTTATAT
64 TGTGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CTATAT
* *
63422234 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
63422251 ATGCTTGGGT
Statistics
Matches: 124, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
119 19 0.15
120 105 0.85
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCTCCAAAGGCATTTG
TGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACTATAT
Found at i:63422517 original size:22 final size:21
Alignment explanation
Indices: 63422476--63422519 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
63422466 GAATGTGCAT
63422476 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
63422498 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
63422520 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:63444638 original size:21 final size:20
Alignment explanation
Indices: 63444614--63444683 Score: 77
Period size: 21 Copynumber: 3.4 Consensus size: 20
63444604 CTGCCTTTGT
* *
63444614 CTCCCTCACTCGTGCCTCTGC
1 CTCCCTCGCT-GTGCCGCTGC
*
63444635 CTCCCTCGCTGCTGTCGCTGC
1 CTCCCTCGCTG-TGCCGCTGC
*
63444656 CTCCCTCGTTGGTGCCGCTGC
1 CTCCCTCGCT-GTGCCGCTGC
63444677 CTCCCTC
1 CTCCCTC
63444684 TCTGCTGCCT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 1 0.02
21 40 0.95
22 1 0.02
ACGTcount: A:0.01, C:0.50, G:0.20, T:0.29
Consensus pattern (20 bp):
CTCCCTCGCTGTGCCGCTGC
Found at i:63444646 original size:42 final size:42
Alignment explanation
Indices: 63444598--63444694 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
63444588 TCTGCTGCCA
* * *
63444598 TCGCTGCTGCCTTTGTCTCCCTCACTCGTGCCTCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCCTCACTCGTGCCGCTGCCTCCC
* * ** *
63444640 TCGCTGCTGTCGCTGCCTCCCTCGTTGGTGCCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCCTCACTCGTGCCGCTGCCTCCC
*
63444682 TCTCTGCTGCCTC
1 TCGCTGCTGCCTC
63444695 GGCTCTAAGT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.01, C:0.46, G:0.21, T:0.32
Consensus pattern (42 bp):
TCGCTGCTGCCTCTGCCTCCCTCACTCGTGCCGCTGCCTCCC
Found at i:63444692 original size:21 final size:21
Alignment explanation
Indices: 63444626--63444692 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
63444616 CCCTCACTCG
* *
63444626 TGCCTCTGCCTCCCTCGCTGC
1 TGCCGCTGCCTCCCTCTCTGC
* *
63444647 TGTCGCTGCCTCCCTCGT-TGG
1 TGCCGCTGCCTCCCTC-TCTGC
63444668 TGCCGCTGCCTCCCTCTCTGC
1 TGCCGCTGCCTCCCTCTCTGC
63444689 TGCC
1 TGCC
63444693 TCGGCTCTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
20 1 0.03
21 37 0.97
ACGTcount: A:0.00, C:0.48, G:0.22, T:0.30
Consensus pattern (21 bp):
TGCCGCTGCCTCCCTCTCTGC
Found at i:63445134 original size:13 final size:14
Alignment explanation
Indices: 63445109--63445137 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63445099 TGATGAATTG
63445109 AATTAAACAATTAT
1 AATTAAACAATTAT
63445123 AATTAAAC-ATTAT
1 AATTAAACAATTAT
63445136 AA
1 AA
63445138 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:63445340 original size:17 final size:14
Alignment explanation
Indices: 63445302--63445330 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
63445292 TAAAAATATT
63445302 ATTTAATAGTAGAA
1 ATTTAATAGTAGAA
63445316 ATTTAATAGTAGAA
1 ATTTAATAGTAGAA
63445330 A
1 A
63445331 GTTATTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (14 bp):
ATTTAATAGTAGAA
Found at i:63450177 original size:9 final size:9
Alignment explanation
Indices: 63450163--63450397 Score: 100
Period size: 9 Copynumber: 26.7 Consensus size: 9
63450153 TAAGTATAAT
63450163 TAAGTTATG
1 TAAGTTATG
63450172 TAAGTTATG
1 TAAGTTATG
* * *
63450181 ATATGATATA
1 -TAAGTTATG
*
63450191 T-ATTTATG
1 TAAGTTATG
63450199 T-A-TTATG
1 TAAGTTATG
63450206 TAAGTTATG
1 TAAGTTATG
* *
63450215 TAAATTATT
1 TAAGTTATG
63450224 TAAGTTATG
1 TAAGTTATG
63450233 T-A-TTATG
1 TAAGTTATG
* **
63450240 TACGACAT-
1 TAAGTTATG
* *
63450248 AAAGTAATG
1 TAAGTTATG
* * *
63450257 AAATTTGATCTT
1 TAAGTT-A--TG
*
63450269 TAAATTATG
1 TAAGTTATG
*
63450278 TAAGTCATG
1 TAAGTTATG
63450287 T-A-TTATG
1 TAAGTTATG
63450294 TAAGTTATG
1 TAAGTTATG
63450303 T-A-TTATG
1 TAAGTTATG
63450310 TAAGTTATG
1 TAAGTTATG
*
63450319 TAAATTATG
1 TAAGTTATG
63450328 TAAGTTATG
1 TAAGTTATG
* *
63450337 -AAATTCAAACTT
1 TAAGTT---A-TG
*
63450349 TAAATTATG
1 TAAGTTATG
63450358 TAAGTTATG
1 TAAGTTATG
63450367 T-A-TTATG
1 TAAGTTATG
*
63450374 TAAATTATG
1 TAAGTTATG
*
63450383 TAAATTATG
1 TAAGTTATG
*
63450392 TGAGTT
1 TAAGTT
63450398 GCTGGTGAAC
Statistics
Matches: 171, Mismatches: 35, Indels: 40
0.70 0.14 0.16
Matches are distributed among these distances:
7 29 0.17
8 21 0.12
9 100 0.58
10 8 0.05
11 2 0.01
12 6 0.04
13 5 0.03
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:63450205 original size:34 final size:34
Alignment explanation
Indices: 63450167--63450387 Score: 100
Period size: 34 Copynumber: 6.6 Consensus size: 34
63450157 TATAATTAAG
* *
63450167 TTATGTAAGTTATG-ATATGATATATATTTATGTA
1 TTATGTAAGTTATGTAAATGATATA-AGTTATGTA
* *
63450201 TTATGTAAGTTATGTAAATTATTTAAGTTATGTA
1 TTATGTAAGTTATGTAAATGATATAAGTTATGTA
* * * * ** * **
63450235 TTATGTACGACATAAAGT-AATGAAATTTGATCTTTAAA
1 TTATGTA--A-GTTATGTAAATGATATAAG-T-TATGTA
* * *
63450273 TTATGTAAGTCATGT--ATTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAATGATATAAGTTATGTA
* *
63450305 TTATGTAAGTTATGTAAATTATGTAAGTTATG-A
1 TTATGTAAGTTATGTAAATGATATAAGTTATGTA
* ** * *
63450338 -AAT-TCAAACT-T-TAAATTATGTAAGTTATGTA
1 TTATGT-AAGTTATGTAAATGATATAAGTTATGTA
*
63450369 TTATGTAAATTATGTAAAT
1 TTATGTAAGTTATGTAAAT
63450388 TATGTGAGTT
Statistics
Matches: 141, Mismatches: 32, Indels: 28
0.70 0.16 0.14
Matches are distributed among these distances:
30 18 0.13
31 3 0.02
32 28 0.20
33 4 0.03
34 54 0.38
35 11 0.08
36 8 0.06
37 5 0.04
38 10 0.07
ACGTcount: A:0.38, C:0.03, G:0.14, T:0.45
Consensus pattern (34 bp):
TTATGTAAGTTATGTAAATGATATAAGTTATGTA
Found at i:63450215 original size:16 final size:16
Alignment explanation
Indices: 63450167--63450384 Score: 116
Period size: 16 Copynumber: 13.0 Consensus size: 16
63450157 TATAATTAAG
63450167 TTATGTAAGTTATGATA
1 TTATGTAAGTTATG-TA
* * *
63450184 TGATATATATTTATGTA
1 TTATGTA-AGTTATGTA
63450201 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
*
63450219 TTATTTAAGTTATGTA
1 TTATGTAAGTTATGTA
* ** **
63450235 TTATGTACGACATAAA
1 TTATGTAAGTTATGTA
* * * *
63450251 GTAATGAAATTTGATCTTTAAA
1 -TTATGTAAGTT-A--TGT--A
*
63450273 TTATGTAAGTCATGTA
1 TTATGTAAGTTATGTA
63450289 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
63450305 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
*
63450323 TTATGTAAGTTATGAA
1 TTATGTAAGTTATGTA
* ** * **
63450339 AT-TCAAACTT-TAAA
1 TTATGTAAGTTATGTA
63450353 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
*
63450369 TTATGTAAATTATGTA
1 TTATGTAAGTTATGTA
63450385 AATTATGTGA
Statistics
Matches: 148, Mismatches: 40, Indels: 27
0.69 0.19 0.13
Matches are distributed among these distances:
14 4 0.03
15 10 0.07
16 68 0.46
17 17 0.11
18 39 0.26
20 2 0.01
21 7 0.05
22 1 0.01
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.45
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:63450227 original size:18 final size:18
Alignment explanation
Indices: 63450200--63450397 Score: 124
Period size: 16 Copynumber: 11.7 Consensus size: 18
63450190 ATATTTATGT
63450200 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
*
63450218 ATTATTTAAGTTATGT--
1 ATTATGTAAGTTATGTAA
* **
63450234 ATTATGTACG--ACATAA
1 ATTATGTAAGTTATGTAA
* * * *
63450250 AGTAATGAAATTTGATCTTTAA
1 A-TTATGTAAGTT-A--TGTAA
*
63450272 ATTATGTAAGTCATGT--
1 ATTATGTAAGTTATGTAA
63450288 ATTATGTAAGTTATGT--
1 ATTATGTAAGTTATGTAA
63450304 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
63450322 ATTATGTAAGTTATG-AA
1 ATTATGTAAGTTATGTAA
*
63450339 ATTCA---AA-CT-T-TAA
1 ATT-ATGTAAGTTATGTAA
63450352 ATTATGTAAGTTATGT--
1 ATTATGTAAGTTATGTAA
*
63450368 ATTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
*
63450386 ATTATGTGAGTT
1 ATTATGTAAGTT
63450398 GCTGGTGAAC
Statistics
Matches: 138, Mismatches: 22, Indels: 40
0.69 0.11 0.20
Matches are distributed among these distances:
12 1 0.01
13 6 0.04
14 3 0.02
15 4 0.03
16 56 0.41
17 11 0.08
18 44 0.32
20 2 0.01
21 7 0.05
22 4 0.03
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.44
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:63450670 original size:62 final size:59
Alignment explanation
Indices: 63450593--63450781 Score: 192
Period size: 62 Copynumber: 3.2 Consensus size: 59
63450583 TTGATTCAAA
*
63450593 AAAATGAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAAT
1 AAAATAAAATATTTAAAATAAAACTTTAAATA-AATTTAATTTAATT-GGTAAT-TTAAAAT
* * * * *
63450655 AAAATAAAATATTTAAAATAAAA--TAAAATGTTAAAATT-ATTT--TTCGTGATTCAAAA-
1 AAAATAAAATATTTAAAATAAAACTTTAAA---TAAATTTAATTTAATTGGTAATTTAAAAT
*
63450711 AAAATAAAATATTTAAAATGAAACTTTAAATATAATTTAATTTAATTGGGTAATTTAAAAAT
1 AAAATAAAATATTTAAAATAAAACTTTAAATA-AATTTAATTTAATT-GGTAATTT-AAAAT
63450773 AAAATAAAA
1 AAAATAAAA
63450782 GAGAACAAAA
Statistics
Matches: 103, Mismatches: 12, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
55 2 0.02
56 26 0.25
57 9 0.09
58 8 0.08
59 4 0.04
60 9 0.09
61 8 0.08
62 35 0.34
63 2 0.02
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.36
Consensus pattern (59 bp):
AAAATAAAATATTTAAAATAAAACTTTAAATAAATTTAATTTAATTGGTAATTTAAAAT
Found at i:63450674 original size:117 final size:118
Alignment explanation
Indices: 63450550--63450781 Score: 369
Period size: 118 Copynumber: 2.0 Consensus size: 118
63450540 TTAGGTAATG
* * * *
63450550 TTAAAATATAATAAAATATTGAAATTATTTTTCTTGATTC-AAAAAAATGAAATATTTAAAATAA
1 TTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATTCAAAAAAAATAAAATATTTAAAATAA
63450614 AACTTTAAATACAATTTAATTTAATTAGGTAATGTT-AAAATAAAATAAAATAT
66 AACTTTAAATACAATTTAATTTAATTAGGTAAT-TTAAAAATAAAATAAAATAT
* *
63450667 TTAAAATAAAATAAAATGTTAAAATTATTTTTCGTGATTCAAAAAAAATAAAATATTTAAAATGA
1 TTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATTCAAAAAAAATAAAATATTTAAAATAA
* *
63450732 AACTTTAAATATAATTTAATTTAATTGGGTAATTTAAAAATAAAATAAAA
66 AACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAA
63450782 GAGAACAAAA
Statistics
Matches: 105, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
117 38 0.36
118 67 0.64
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.38
Consensus pattern (118 bp):
TTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATTCAAAAAAAATAAAATATTTAAAATAA
AACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAATAT
Found at i:63453772 original size:25 final size:25
Alignment explanation
Indices: 63453738--63453809 Score: 135
Period size: 25 Copynumber: 2.9 Consensus size: 25
63453728 GGAGGAGATG
*
63453738 GGGAAATTGGGGATTTCAGAATTTA
1 GGGAAATTGGGGATTTCAAAATTTA
63453763 GGGAAATTGGGGATTTCAAAATTTA
1 GGGAAATTGGGGATTTCAAAATTTA
63453788 GGGAAATTGGGGATTTCAAAAT
1 GGGAAATTGGGGATTTCAAAAT
63453810 CGGGGCAAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.35, C:0.04, G:0.31, T:0.31
Consensus pattern (25 bp):
GGGAAATTGGGGATTTCAAAATTTA
Found at i:63454674 original size:13 final size:13
Alignment explanation
Indices: 63454648--63454683 Score: 63
Period size: 13 Copynumber: 2.7 Consensus size: 13
63454638 AACACTAGCT
63454648 AAACCTCAAACACC
1 AAACCTC-AACACC
63454662 AAACCTCAACACC
1 AAACCTCAACACC
63454675 AAACCTCAA
1 AAACCTCAA
63454684 ACCCCAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.50, C:0.42, G:0.00, T:0.08
Consensus pattern (13 bp):
AAACCTCAACACC
Found at i:63455621 original size:105 final size:105
Alignment explanation
Indices: 63455433--63455712 Score: 397
Period size: 105 Copynumber: 2.7 Consensus size: 105
63455423 ATAACATAAC
* * *
63455433 ATTTTGCGGCGTTTT-AGAACAAACGCCTCTAATTATGATATATTGCGGCGTTTTACATACAAAT
1 ATTTTGCGGCGTTTTAAG-ACAAACGCCGCTAATTATGATATATTGCGGCGTTTTACATAAAAAC
*
63455497 GCCACTAATGCCTCCATATAACGACGCCATTTTTCTCAACA
65 GCCACTAATGCCTCCATATAACGACGCCATTTTGCTCAACA
*
63455538 ATTTTGCGGCGTTTTAAGACAAACGCCGCTAATTATGATATATTGCGGCATTTTACATAAAAACG
1 ATTTTGCGGCGTTTTAAGACAAACGCCGCTAATTATGATATATTGCGGCGTTTTACATAAAAACG
**
63455603 CCACTAATGCC-CCTATATAACGACGCTGTTTTGCTCAACA
66 CCACTAATGCCTCC-ATATAACGACGCCATTTTGCTCAACA
* * ** *
63455643 ATTTTGCAGCGTTTTATGAC-AACTGCCGCTAATGCTGATATATTGCGGCGTTTTATAT-AAAAC
1 ATTTTGCGGCGTTTTAAGACAAAC-GCCGCTAATTATGATATATTGCGGCGTTTTACATAAAAAC
63455706 GCCACTA
65 GCCACTA
63455713 GTGCATCTAC
Statistics
Matches: 159, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
104 17 0.11
105 140 0.88
106 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (105 bp):
ATTTTGCGGCGTTTTAAGACAAACGCCGCTAATTATGATATATTGCGGCGTTTTACATAAAAACG
CCACTAATGCCTCCATATAACGACGCCATTTTGCTCAACA
Found at i:63463557 original size:28 final size:29
Alignment explanation
Indices: 63463490--63463590 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
63463480 ATAGTGAATC
*
63463490 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
63463519 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
63463547 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
63463577 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63463591 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:63467472 original size:43 final size:43
Alignment explanation
Indices: 63467419--63467502 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
63467409 TTATATGATT
*
63467419 TGAAATCATTGAGTTGGTTTGAGCTCATGATATATGTGACATC
1 TGAAATCATTGAGTTGGTCTGAGCTCATGATATATGTGACATC
* ** * *
63467462 TGAACTCATTGAGTTGGTCTGATTTCGTGATGTATGTGACA
1 TGAAATCATTGAGTTGGTCTGAGCTCATGATATATGTGACA
63467503 CATGTAATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (43 bp):
TGAAATCATTGAGTTGGTCTGAGCTCATGATATATGTGACATC
Found at i:63483801 original size:17 final size:17
Alignment explanation
Indices: 63483781--63483813 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63483771 AAGGAAAATA
63483781 AATGAATCTTAAAAACG
1 AATGAATCTTAAAAACG
*
63483798 AATGAGTCTTAAAAAC
1 AATGAATCTTAAAAAC
63483814 TTAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
AATGAATCTTAAAAACG
Found at i:63492880 original size:40 final size:40
Alignment explanation
Indices: 63492843--63493028 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
63492833 GCTACTCGTT
*
63492843 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
63492883 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
63492923 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
63492963 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
63493004 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63493029 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:63499299 original size:40 final size:39
Alignment explanation
Indices: 63499264--63499445 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 39
63499254 TACTCGTTCG
*
63499264 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCACA
* *
63499304 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACA
*
63499344 AATGCCTTCGGG-CTTAGCCCGGATTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCACA
* *
63499382 AATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCACA
63499423 AA-GCCTTCGGGACTTAGCCCGGT
1 AATGCCTTCGGGACTTAGCCCGGT
63499446 CATCATTCGA
Statistics
Matches: 126, Mismatches: 10, Indels: 13
0.85 0.07 0.09
Matches are distributed among these distances:
37 2 0.02
38 23 0.18
39 19 0.15
40 69 0.55
41 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCACA
Found at i:63499384 original size:78 final size:80
Alignment explanation
Indices: 63499264--63499444 Score: 262
Period size: 78 Copynumber: 2.3 Consensus size: 80
63499254 TACTCGTTCG
* *
63499264 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
*
63499328 TTTAGTAAC-TCGCACC
65 TTTAGTAACTTAGCA-C
**
63499344 AATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
63499407 TTAGTAACTTAGCAC
66 TTAGTAACTTAGCAC
*
63499422 AAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
63499445 TCATCATTCG
Statistics
Matches: 92, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
77 3 0.03
78 53 0.58
79 24 0.26
80 12 0.13
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
TTAGTAACTTAGCAC
Found at i:63503377 original size:80 final size:82
Alignment explanation
Indices: 63503265--63503450 Score: 233
Period size: 80 Copynumber: 2.3 Consensus size: 82
63503255 GCTACTCGTT
*
63503265 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC-AGATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGA-ATGCCTTC-GGATCTTAACC
* *
63503327 CGGATTTAGTAAC-TCGCA
64 CGGATATAGTAACTTAGCA
* **
63503345 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACGAATGCCTTCGGATCTTAGTCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCTTAACCC
*
63503408 GGATATAGTCACTTAGCA
65 GGATATAGTAACTTAGCA
63503426 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63503451 CATCATTCGA
Statistics
Matches: 92, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
79 6 0.07
80 72 0.78
81 14 0.15
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:63503450 original size:40 final size:39
Alignment explanation
Indices: 63503246--63503450 Score: 200
Period size: 40 Copynumber: 5.1 Consensus size: 39
63503236 CAGAGTTTAA
** *
63503246 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAA-GCCTTCGGGACTTAGC
* * *
63503286 CCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACA-AAGCCTTCGGGACTTAGC
* *
63503326 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAA-GCCTTCGGGA-CTTAGC
* * *
63503366 CCGGATTTAGTAACTCGCACGAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCAC-AAAGCCTTCGGGA-CTTAGC
* *
63503406 CCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAAGCCTTCGGGACTTAGC
63503446 CCGGA
1 CCGGA
63503451 CATCATTCGA
Statistics
Matches: 141, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
39 5 0.04
40 125 0.89
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAAGCCTTCGGGACTTAGC
Found at i:63505122 original size:32 final size:32
Alignment explanation
Indices: 63505086--63505146 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
63505076 TGTATGCATT
63505086 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
63505118 TTAGCATTTTAATAGTTAATGGATGATGG
1 TTAGCATTTTAATAGTTAATGGATGATGG
63505147 CCATGGTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.05, G:0.25, T:0.39
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:63507076 original size:26 final size:28
Alignment explanation
Indices: 63507027--63507095 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
63507017 ATAGTGAGTC
*
63507027 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
63507054 CGCACAC-TAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
63507081 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63507096 GTACAAGTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 13 0.34
27 18 0.47
28 7 0.18
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:63517167 original size:47 final size:47
Alignment explanation
Indices: 63517113--63517400 Score: 405
Period size: 47 Copynumber: 6.1 Consensus size: 47
63517103 TTAGGATTTT
** *
63517113 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
63517160 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
63517207 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGTCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
63517254 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
63517301 ATGTGATGAATGTGAGCCTGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * ** *
63517348 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGTTGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
63517395 ATGTGA
1 ATGTGA
63517401 AATATATATA
Statistics
Matches: 212, Mismatches: 29, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 212 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:63517215 original size:25 final size:25
Alignment explanation
Indices: 63517140--63517215 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
63517130 GTGTATATAT
63517140 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
63517165 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
63517187 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
63517212 GTGA
1 GTGA
63517216 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:63517294 original size:141 final size:141
Alignment explanation
Indices: 63517112--63517377 Score: 496
Period size: 141 Copynumber: 1.9 Consensus size: 141
63517102 TTTAGGATTT
** *
63517112 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
63517177 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
63517242 GCCGAATGTCC
131 GCCGAATGTCC
63517253 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
63517318 CTGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTG
63517378 GTAAAGTTGA
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 121 1.00
ACGTcount: A:0.31, C:0.12, G:0.29, T:0.28
Consensus pattern (141 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
GCCGAATGTCC
Found at i:63517750 original size:37 final size:37
Alignment explanation
Indices: 63517605--63517749 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
63517595 GGAAATATAT
*
63517605 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
63517642 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
63517679 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
63517716 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
63517750 TCGTCTGAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:63533532 original size:40 final size:40
Alignment explanation
Indices: 63533466--63533615 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
63533456 AAATTGAATG
* * *
63533466 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
63533505 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
63533545 A-ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
63533584 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
63533616 ACGTGTTATA
Statistics
Matches: 91, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 41 0.45
40 45 0.49
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:63533550 original size:39 final size:40
Alignment explanation
Indices: 63533506--63533615 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
63533496 CTGGAAATTA
* *
63533506 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-T-GGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
**
63533544 TAATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTC
1 T-ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTAGGC
*
63533585 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
63533616 ACGTGTTATA
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
38 4 0.06
39 27 0.44
40 27 0.44
41 4 0.06
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
Found at i:63543261 original size:74 final size:72
Alignment explanation
Indices: 63543146--63543294 Score: 253
Period size: 74 Copynumber: 2.0 Consensus size: 72
63543136 GCAAAGACCA
*
63543146 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGC
63543211 GATTTAC
66 GATTTAC
*
63543218 TATGGCACTATGTGTGCGATTTACACTATGGCACTATGTGTGCGATTTGCTATAGCACTATGTGT
1 TATGGCACTATGTGTGCGA-TT-CACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGT
*
63543283 GCGATTTGC
64 GCGATTTAC
63543292 TAT
1 TAT
63543295 AGTCACATTC
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
72 19 0.26
73 2 0.03
74 51 0.71
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (72 bp):
TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGC
GATTTAC
Found at i:63543296 original size:24 final size:24
Alignment explanation
Indices: 63543146--63543294 Score: 244
Period size: 24 Copynumber: 6.1 Consensus size: 24
63543136 GCAAAGACCA
*
63543146 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
63543170 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
63543194 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
63543218 TATGGCACTATGTGTGCGATTTACAC
1 TATGGCACTATGTGTGCGATTT--AC
*
63543244 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
63543268 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
63543292 TAT
1 TAT
63543295 AGTCACATTC
Statistics
Matches: 120, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
24 96 0.80
26 24 0.20
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:63552050 original size:24 final size:24
Alignment explanation
Indices: 63552019--63552181 Score: 299
Period size: 24 Copynumber: 6.8 Consensus size: 24
63552009 GCTGGAAATA
*
63552019 TATGGCACTGTGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
63552043 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
63552067 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
63552091 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
63552115 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
63552139 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
63552163 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
63552182 ACATAATAAG
Statistics
Matches: 136, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 136 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:63552195 original size:72 final size:72
Alignment explanation
Indices: 63552019--63552203 Score: 255
Period size: 72 Copynumber: 2.6 Consensus size: 72
63552009 GCTGGAAATA
* ** * *
63552019 TATGGCACTGTGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
*
63552084 GATTTAC
66 GATTCAC
** * *
63552091 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
*
63552156 GATTCGC
66 GATTCAC
63552163 TATGGCACTATGTGTGCGAACATAATA-AGCACTATGTGTGC
1 TATGGCACTATGTGTGCG-ACATAATATAGCACTATGTGTGC
63552204 CACATTCGGT
Statistics
Matches: 105, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
72 100 0.95
73 5 0.05
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (72 bp):
TATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
GATTCAC
Found at i:63558370 original size:22 final size:22
Alignment explanation
Indices: 63558345--63558389 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
63558335 AGCGTTGGCA
*
63558345 TAGGTTATTGACGAGTATTTAT
1 TAGGCTATTGACGAGTATTTAT
63558367 TAGGCTATTGACGAGTATTTAT
1 TAGGCTATTGACGAGTATTTAT
63558389 T
1 T
63558390 TTGCAATTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.07, G:0.22, T:0.44
Consensus pattern (22 bp):
TAGGCTATTGACGAGTATTTAT
Found at i:63558398 original size:22 final size:22
Alignment explanation
Indices: 63558351--63558398 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
63558341 GGCATAGGTT
*
63558351 ATTGACGAGTATTTATTAGGCT
1 ATTGACGAGTATTTATTAGGCA
**
63558373 ATTGACGAGTATTTATTTTGCA
1 ATTGACGAGTATTTATTAGGCA
63558395 ATTG
1 ATTG
63558399 GTTTTGGCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (22 bp):
ATTGACGAGTATTTATTAGGCA
Found at i:63562041 original size:22 final size:22
Alignment explanation
Indices: 63562016--63562076 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
63562006 TTTTCTTTTA
63562016 TTTATATTTATTTTTTAT-ATT
1 TTTATATTTATTTTTTATAATT
*
63562037 TTT-TATTTTTTATTTTACTAATT
1 TTTATATTTATT-TTTTA-TAATT
*
63562060 TTTATA-TTATTTATTAT
1 TTTATATTTATTTTTTAT
63562077 TCTTATACTT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
20 7 0.21
21 9 0.27
22 5 0.15
23 10 0.30
24 2 0.06
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTATATTTATTTTTTATAATT
Found at i:63562072 original size:9 final size:8
Alignment explanation
Indices: 63562022--63562083 Score: 51
Period size: 7 Copynumber: 7.8 Consensus size: 8
63562012 TTTATTTATA
63562022 TTTAT-TT
1 TTTATATT
63562029 TTTATATT
1 TTTATATT
63562037 TTT-TATT
1 TTTATATT
63562044 TTT-TA-T
1 TTTATATT
63562050 TTTACTAATT
1 TTTA-T-ATT
63562060 TTTATATT
1 TTTATATT
63562068 ATTTATTATT
1 -TTTA-TATT
*
63562078 CTTATA
1 TTTATA
63562084 CTTATATTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
6 4 0.09
7 14 0.30
8 11 0.23
9 9 0.19
10 9 0.19
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTATATT
Found at i:63562094 original size:31 final size:31
Alignment explanation
Indices: 63562017--63562099 Score: 78
Period size: 31 Copynumber: 2.6 Consensus size: 31
63562007 TTTCTTTTAT
* * *
63562017 TTATATTTATTTTTTATATTTTTTATTTTTTA
1 TTATACTTA-TTTTTATATTATTTATTTATTA
* * *
63562049 TTTTACTAATTTTTATATTATTTA-TTATTC
1 TTATACTTATTTTTATATTATTTATTTATTA
*
63562079 TTATACTTATATTTTAAATTA
1 TTATACTTAT-TTTTATATTA
63562100 ACTTTAATTT
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
30 12 0.29
31 23 0.56
32 6 0.15
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.69
Consensus pattern (31 bp):
TTATACTTATTTTTATATTATTTATTTATTA
Found at i:63565215 original size:40 final size:40
Alignment explanation
Indices: 63565142--63565323 Score: 248
Period size: 40 Copynumber: 4.6 Consensus size: 40
63565132 CGAATGATGA
*
63565142 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAT
*
63565182 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
63565221 CCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
63565261 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
*
63565301 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
63565324 CGAACGAGTA
Statistics
Matches: 127, Mismatches: 8, Indels: 14
0.85 0.05 0.09
Matches are distributed among these distances:
39 35 0.28
40 82 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:63565277 original size:79 final size:81
Alignment explanation
Indices: 63565141--63565323 Score: 259
Period size: 79 Copynumber: 2.3 Consensus size: 81
63565131 TCGAATGATG
*
63565141 ACCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
63565205 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
63565220 TCCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -ACCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTTACTAAATCCGGACTAAGAT-CCGAAGGCA
63565282 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
*
63565300 ACCGGGCTATGTCCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATT
63565324 CGAACGAGTA
Statistics
Matches: 92, Mismatches: 7, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 62 0.67
80 29 0.32
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
ACCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:63565347 original size:79 final size:79
Alignment explanation
Indices: 63565171--63565348 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 79
63565161 CTTTGTGCTA
** *
63565171 AGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAGCCC
1 AGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCC
* **
63565235 GAAGGCATTGGTGCG
65 GAAGGCATTCGAACG
*
63565250 AGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCC
1 AGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CC
63565314 CGAAGGCATTCGAACG
64 CGAAGGCATTCGAACG
*
63565330 AG-TAGCTATATCC-GGTTAA
1 AGTTA-CTAAATCCGGGTTAA
63565349 ATTCTGAAGG
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 3 0.03
79 60 0.69
80 24 0.28
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
AGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCG
AAGGCATTCGAACG
Found at i:63570595 original size:17 final size:17
Alignment explanation
Indices: 63570569--63570611 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
63570559 ATTAGAATGA
*
63570569 ATTATTATTGATTTGTG
1 ATTATCATTGATTTGTG
*
63570586 ATTATCATTGATTTGTT
1 ATTATCATTGATTTGTG
63570603 ATTATCATT
1 ATTATCATT
63570612 AATATGTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.58
Consensus pattern (17 bp):
ATTATCATTGATTTGTG
Found at i:63570619 original size:17 final size:17
Alignment explanation
Indices: 63570586--63570619 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
63570576 TTGATTTGTG
* *
63570586 ATTATCATTGATTTGTT
1 ATTATCATTAATATGTT
63570603 ATTATCATTAATATGTT
1 ATTATCATTAATATGTT
63570620 TTAGATTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.09, T:0.56
Consensus pattern (17 bp):
ATTATCATTAATATGTT
Found at i:63575797 original size:5 final size:5
Alignment explanation
Indices: 63575787--63575812 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
63575777 AAAAACAAAT
63575787 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
63575813 AGTTGGCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:63578535 original size:2 final size:2
Alignment explanation
Indices: 63578528--63578554 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
63578518 GAGACTAGTC
63578528 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
63578555 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:63580588 original size:30 final size:30
Alignment explanation
Indices: 63580554--63580614 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
63580544 TCCTTAACTC
63580554 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
63580584 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
63580614 A
1 A
63580615 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:63588676 original size:21 final size:22
Alignment explanation
Indices: 63588647--63588687 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
63588637 AATATACAAT
63588647 TATGTTAA-TTGAATTTATATTG
1 TATGTTAATTTG-ATTTATATTG
63588669 TATG-TAATTTGATTTATAT
1 TATGTTAATTTGATTTATAT
63588688 AATTTTCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (22 bp):
TATGTTAATTTGATTTATATTG
Found at i:63596714 original size:40 final size:40
Alignment explanation
Indices: 63596669--63596836 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
63596659 CGGAATATAA
63596669 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
63596709 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
63596749 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
63596789 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
63596829 CCGGATAT
1 CCGGATAT
63596837 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63596819 original size:80 final size:80
Alignment explanation
Indices: 63596685--63596834 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
63596675 ATAACCACGT
* *
63596685 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
63596750 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
63596765 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
63596828 CCCGGAT
64 CCCGGAT
63596835 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:63608055 original size:29 final size:29
Alignment explanation
Indices: 63608022--63608153 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
63608012 GTGATGAGAT
*
63608022 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
63608051 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
63608080 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
63608109 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
63608138 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
63608154 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:63612489 original size:30 final size:30
Alignment explanation
Indices: 63612455--63612515 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
63612445 TCCTTAATTC
63612455 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
63612485 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
63612515 A
1 A
63612516 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:63621833 original size:10 final size:10
Alignment explanation
Indices: 63621808--63621858 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
63621798 GAATCTGTCA
*
63621808 AAAATAAATT
1 AAAATTAATT
*
63621818 AAAATTAATC
1 AAAATTAATT
*
63621828 AAAATTTATTAT
1 AAAA-TTAAT-T
63621840 AAAATTAATT
1 AAAATTAATT
63621850 AAAATTAAT
1 AAAATTAAT
63621859 AATTTAAGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
10 22 0.65
11 8 0.24
12 4 0.12
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (10 bp):
AAAATTAATT
Found at i:63627468 original size:42 final size:42
Alignment explanation
Indices: 63627360--63627518 Score: 189
Period size: 42 Copynumber: 3.9 Consensus size: 42
63627350 GCGATTCAAC
63627360 ATAGCTTCGGCTATATATGGCACTTAGTGTGTGAG-AATGAG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGTGAGAAATGAG
* * * *
63627401 ATTGCTTTGGCTACATATGGCACTTAGTGTGTGAGAAATGTG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGTGAGAAATGAG
* ** *
63627443 ATAGCTTCGGCTATGTATGGCACTTAGTGTGT--GATTTGAA
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGTGAGAAATGAG
* * * *
63627483 ATAGCTTCGGCTATGTACGACACTTAGTGTGCGAGA
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGTGAGA
63627519 TATCGAGTAT
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
40 33 0.33
41 32 0.32
42 35 0.35
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (42 bp):
ATAGCTTCGGCTATATATGGCACTTAGTGTGTGAGAAATGAG
Found at i:63627487 original size:40 final size:40
Alignment explanation
Indices: 63627360--63627513 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
63627350 GCGATTCAAC
*
63627360 ATAGCTTCGGCTATATATGGCACTTAGTGTGTGAGAATGAG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGTGA-AATGAA
* * * **
63627401 ATTGCTTTGGCTACATATGGCACTTAGTGTGTGAGAAATGTG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGT--GAAATGAA
* **
63627443 ATAGCTTCGGCTATGTATGGCACTTAGTGTGTGATTTGAA
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGTGAAATGAA
* * *
63627483 ATAGCTTCGGCTATGTACGACACTTAGTGTG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTG
63627514 CGAGATATCG
Statistics
Matches: 97, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
40 33 0.34
41 29 0.30
42 33 0.34
43 2 0.02
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (40 bp):
ATAGCTTCGGCTATATATGGCACTTAGTGTGTGAAATGAA
Found at i:63628814 original size:43 final size:42
Alignment explanation
Indices: 63628706--63628816 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 42
63628696 CCTATGTTTT
* *
63628706 CACACGACTGGAAACACGGGTGTGTCTAGTGGCTGTGTGAGA
1 CACACGACTGGACACACGGGCGTGTCTAGTGGCTGTGTGAGA
* ** *
63628748 CACACGGCCTCAACACACAGGCGTGTCTAGTGGCTGTGTGAGA
1 CACAC-GACTGGACACACGGGCGTGTCTAGTGGCTGTGTGAGA
*
63628791 CACACGACTTGGTCACACGGGCGTGT
1 CACACGAC-TGGACACACGGGCGTGT
63628817 GTCCCCTGTT
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 7 0.12
43 49 0.88
ACGTcount: A:0.23, C:0.25, G:0.32, T:0.20
Consensus pattern (42 bp):
CACACGACTGGACACACGGGCGTGTCTAGTGGCTGTGTGAGA
Found at i:63631302 original size:40 final size:40
Alignment explanation
Indices: 63631240--63631455 Score: 305
Period size: 40 Copynumber: 5.4 Consensus size: 40
63631230 AAACCAAGTA
* * * *
63631240 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCTCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
63631279 CCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63631319 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63631359 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * *
63631399 CCTTCGGGACTTAGCCTGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
63631439 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
63631456 CGTTATCATC
Statistics
Matches: 164, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 14 0.09
40 150 0.91
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63638095 original size:40 final size:40
Alignment explanation
Indices: 63638005--63638254 Score: 285
Period size: 40 Copynumber: 6.3 Consensus size: 40
63637995 ACCCAATTAT
* * * *
63638005 CTTCGGGATTTAG-CCGGATATAACT-ACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGC
* * * * *
63638043 CTTCGGGTCTTAGTCCGG-ATATGGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGC
63638083 CTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGC
* *
63638123 CTTCGGGACTTAGCTCGGAATTAGTAACTCGCACACATGC
1 CTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGC
* *
63638163 CTTCGGGACTTAGGCCGGAATTAATAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGC
* * * *
63638203 CTTCGGGACTTAGCCCGGAATTAATCACTAGCACAAATGT
1 CTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGC
63638243 CTTCGGGACTTA
1 CTTCGGGACTTA
63638255 ACCCCGTTAG
Statistics
Matches: 185, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
37 2 0.01
38 12 0.06
39 11 0.06
40 158 0.85
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGC
Found at i:63642421 original size:40 final size:40
Alignment explanation
Indices: 63642260--63642465 Score: 208
Period size: 40 Copynumber: 5.2 Consensus size: 40
63642250 TGAATGATAC
* *
63642260 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAAT-ATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-ATCATAT
* * *
63642300 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
* *
63642340 CCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATCATAT
* * *
63642379 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATCATAT
* * * * *
63642419 CCGGGTTAAGA-CCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
63642458 CC-GGCTAA
1 CCGGGCTAA
63642466 ATTCCGAAGA
Statistics
Matches: 142, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
38 6 0.04
39 55 0.39
40 81 0.57
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
Found at i:63642458 original size:79 final size:79
Alignment explanation
Indices: 63642260--63642465 Score: 220
Period size: 79 Copynumber: 2.6 Consensus size: 79
63642250 TGAATGATAC
* * * ** *
63642260 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAG-ACCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTA
* ** *
63642325 TGCTAGTGATTATAT
65 TGCAAGTGACCAAAT
* * * *
63642340 CCGGGCTAAGACCGAAGGC-ATTCGTGCGAGTTGTCATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCGAAGGCAATT-GTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTA
63642404 TGCAAGAT-ACCAAAT
65 TGCAAG-TGACCAAAT
* *
63642419 CCGGGTTAAGACCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAA
63642466 ATTCCGAAGA
Statistics
Matches: 104, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
78 8 0.08
79 82 0.79
80 14 0.13
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTAT
GCAAGTGACCAAAT
Found at i:63644067 original size:37 final size:37
Alignment explanation
Indices: 63644005--63644086 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 37
63643995 AGCTCAGATG
*
63644005 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
* *
63644042 AAATCTCCACACGTAGTCATTGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
63644079 TAATCTCC
1 AAATCTCC
63644087 GGACATAATC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:63644090 original size:13 final size:13
Alignment explanation
Indices: 63644072--63644099 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
63644062 TGGGTCTTAC
63644072 CCGGACATAATCT
1 CCGGACATAATCT
63644085 CCGGACATAATCT
1 CCGGACATAATCT
63644098 CC
1 CC
63644100 ACACGTAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.36, G:0.14, T:0.21
Consensus pattern (13 bp):
CCGGACATAATCT
Found at i:63644469 original size:48 final size:48
Alignment explanation
Indices: 63644273--63644471 Score: 326
Period size: 48 Copynumber: 4.1 Consensus size: 48
63644263 ACACATCGCC
*
63644273 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
63644323 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
63644371 TAAATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
63644419 TACATATTTCACATTAGCCATCCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63644467 TACAT
1 TACAT
63644472 CAATTTCCGC
Statistics
Matches: 140, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
48 96 0.69
50 44 0.31
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:63649014 original size:40 final size:40
Alignment explanation
Indices: 63648969--63649135 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
63648959 CGGAATATAA
63648969 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63649009 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
63649049 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63649089 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63649128 CCGGATAT
1 CCGGATAT
63649136 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63649119 original size:80 final size:79
Alignment explanation
Indices: 63648969--63649135 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
63648959 CGGAATATAA
* *
63648969 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
63649034 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
63649049 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
63649111 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
63649128 CCGGATAT
1 CCGGATAT
63649136 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:63649982 original size:17 final size:19
Alignment explanation
Indices: 63649959--63650004 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
63649949 AAGAAGCATG
63649959 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
63649977 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
63649995 AATCATGCTC
1 AATCATGCTC
63650005 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:63656993 original size:40 final size:40
Alignment explanation
Indices: 63656948--63657114 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
63656938 CGGAATATAA
63656948 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63656988 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
63657028 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63657068 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63657107 CCGGATAT
1 CCGGATAT
63657115 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63657098 original size:80 final size:79
Alignment explanation
Indices: 63656948--63657114 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
63656938 CGGAATATAA
* *
63656948 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
63657013 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
63657028 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
63657090 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
63657107 CCGGATAT
1 CCGGATAT
63657115 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Done.