Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 214 of 378
Found at i:63657955 original size:17 final size:19
Alignment explanation
Indices: 63657932--63657977 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
63657922 AAGAAGCATG
63657932 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
63657950 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
63657968 AATCATGCTC
1 AATCATGCTC
63657978 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:63660453 original size:39 final size:39
Alignment explanation
Indices: 63660394--63660469 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
63660384 TGTTTTTGAG
* * *
63660394 TATTGTGATATATGCCTAAATGTTATGTGGTTATATGAC
1 TATTGTGATAGATACCTAAATGTTATGTGATTATATGAC
*
63660433 TATTGTGATAGATACTTAAATGTTATGTGATTATATG
1 TATTGTGATAGATACCTAAATGTTATGTGATTATATG
63660470 TGTAATGTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (39 bp):
TATTGTGATAGATACCTAAATGTTATGTGATTATATGAC
Found at i:63660491 original size:39 final size:39
Alignment explanation
Indices: 63660397--63660491 Score: 111
Period size: 39 Copynumber: 2.4 Consensus size: 39
63660387 TTTTGAGTAT
** * *
63660397 TGTGATATATGCCTAAATGTTATGTGGTTATATGACTAT
1 TGTGATATATGATTAAATGTTATGTGATTATATGACTAA
* **
63660436 TGTGATAGAT-ACTTAAATGTTATGTGATTATATGTGTAA
1 TGTGATATATGA-TTAAATGTTATGTGATTATATGACTAA
63660475 TGTGATATATGATTAAA
1 TGTGATATATGATTAAA
63660492 ATTGAATATG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
39 45 0.98
40 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (39 bp):
TGTGATATATGATTAAATGTTATGTGATTATATGACTAA
Found at i:63662675 original size:68 final size:70
Alignment explanation
Indices: 63662603--63662800 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
63662593 ACACCCTGTA
* * * *
63662603 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
63662665 ATAAAT
65 ATAAAT
*
63662671 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
63662736 ATAAAT
65 ATAAAT
*
63662742 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
63662801 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:63662714 original size:41 final size:41
Alignment explanation
Indices: 63662669--63662786 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
63662659 TGAAAGATAA
63662669 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
63662710 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63662740 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63662781 ATGTAG
1 ATGTAG
63662787 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:63662726 original size:71 final size:71
Alignment explanation
Indices: 63662637--63662800 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63662627 GAGATGTATC
63662637 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63662702 AGGACA
66 AGGACA
63662708 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63662773 AGGACA
66 AGGACA
63662779 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
63662801 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:63670240 original size:68 final size:70
Alignment explanation
Indices: 63670168--63670365 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
63670158 ACACCCTGTA
* * * *
63670168 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
63670230 ATAAAT
65 ATAAAT
*
63670236 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
63670301 ATAAAT
65 ATAAAT
*
63670307 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
63670366 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:63670279 original size:41 final size:41
Alignment explanation
Indices: 63670234--63670351 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
63670224 TGAAAGATAA
63670234 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
63670275 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63670305 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63670346 ATGTAG
1 ATGTAG
63670352 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:63670291 original size:71 final size:71
Alignment explanation
Indices: 63670202--63670365 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63670192 GAGATGTATC
63670202 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63670267 AGGACA
66 AGGACA
63670273 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63670338 AGGACA
66 AGGACA
63670344 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
63670366 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:63672215 original size:31 final size:31
Alignment explanation
Indices: 63672180--63672243 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
63672170 AACAGTTAGG
63672180 GGAAGCAATGCACCTCACAACAACCCTTTTC
1 GGAAGCAATGCACCTCACAACAACCCTTTTC
63672211 GGAAGCAATGCACCTCACAACAACCCTTTTC
1 GGAAGCAATGCACCTCACAACAACCCTTTTC
63672242 GG
1 GG
63672244 TTCATTCTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.31, C:0.34, G:0.16, T:0.19
Consensus pattern (31 bp):
GGAAGCAATGCACCTCACAACAACCCTTTTC
Found at i:63672583 original size:51 final size:51
Alignment explanation
Indices: 63672502--63672652 Score: 239
Period size: 51 Copynumber: 3.0 Consensus size: 51
63672492 GTGCAGCAGT
63672502 AATATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATTAGC
1 AATATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATTAGC
* * * * *
63672553 AATATTATCCACTCCATCTGATGTTTCAAAATCATCAACATTTTCATCAGC
1 AATATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATTAGC
* *
63672604 AACATTATCCACTCCCTCTGATGTTGCAAAATCACCAGCATATTCATTA
1 AATATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATTA
63672653 CCAGCAACTT
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 88 1.00
ACGTcount: A:0.33, C:0.26, G:0.08, T:0.32
Consensus pattern (51 bp):
AATATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATTAGC
Found at i:63672806 original size:33 final size:33
Alignment explanation
Indices: 63672750--63672838 Score: 90
Period size: 33 Copynumber: 2.7 Consensus size: 33
63672740 GTAGCAGATA
* * *
63672750 CACCCTCCCCATCAGCTTGTACCTCTCCTACAT
1 CACCCTTCCCATCAGATTCTACCTCTCCTACAT
* * * *
63672783 CACCCTTCCCACCAGATTCTACCTTTTCTAGAT
1 CACCCTTCCCATCAGATTCTACCTCTCCTACAT
*
63672816 CA-CCTTCACCATCAAATTCTACC
1 CACCCTTC-CCATCAGATTCTACC
63672839 CCTTCATCAT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
32 5 0.11
33 41 0.89
ACGTcount: A:0.22, C:0.44, G:0.04, T:0.29
Consensus pattern (33 bp):
CACCCTTCCCATCAGATTCTACCTCTCCTACAT
Found at i:63673578 original size:117 final size:117
Alignment explanation
Indices: 63673457--63673667 Score: 332
Period size: 117 Copynumber: 1.8 Consensus size: 117
63673447 GGTAACAGAA
* * * * * *
63673457 ATCAACATCATCTGGACCACTATCTCATCACAAATCAACAAAACAAACCCTACATTCTGGCACTG
1 ATCAACAACATCGGGACCACTATCGCATCAAAAATCAACAAAACAAACCCTACATTCTCGCACTC
*
63673522 AAATTGCAATAATAAATCACAATTAACCATCTACAACTTTTACAACAGTTTT
66 AAATTGCAATAATAAATCACAAATAACCATCTACAACTTTTACAACAGTTTT
* *
63673574 ATCAACAACATCGGGACCACTATCGCATCAAAAATCGACAAAACAAACCCTACATTGTCGCACTC
1 ATCAACAACATCGGGACCACTATCGCATCAAAAATCAACAAAACAAACCCTACATTCTCGCACTC
*
63673639 AAATTGCAATACTAAATCACAAATAACCA
66 AAATTGCAATAATAAATCACAAATAACCA
63673668 ACAAATCAAA
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
117 84 1.00
ACGTcount: A:0.43, C:0.27, G:0.07, T:0.23
Consensus pattern (117 bp):
ATCAACAACATCGGGACCACTATCGCATCAAAAATCAACAAAACAAACCCTACATTCTCGCACTC
AAATTGCAATAATAAATCACAAATAACCATCTACAACTTTTACAACAGTTTT
Found at i:63673875 original size:16 final size:16
Alignment explanation
Indices: 63673854--63673898 Score: 72
Period size: 16 Copynumber: 2.7 Consensus size: 16
63673844 AATGCTAACA
63673854 ATTTAGGGATTTGAAG
1 ATTTAGGGATTTGAAG
63673870 ATTTAGGGATTTGAAG
1 ATTTAGGGATTTGAAG
63673886 ATTGTTAGGGATT
1 A-T-TTAGGGATT
63673899 CAATGAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 17 0.63
17 1 0.04
18 9 0.33
ACGTcount: A:0.29, C:0.00, G:0.31, T:0.40
Consensus pattern (16 bp):
ATTTAGGGATTTGAAG
Found at i:63676283 original size:36 final size:36
Alignment explanation
Indices: 63676236--63676306 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
63676226 ATGTCACTCT
63676236 AAATTTCCAAGAGAAACTTCAAATGGTATGTTTAGG
1 AAATTTCCAAGAGAAACTTCAAATGGTATGTTTAGG
63676272 AAATTTCCAAGAGAAACTTCAAATGGTATGTTTAG
1 AAATTTCCAAGAGAAACTTCAAATGGTATGTTTAG
63676307 ACAACAAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.31
Consensus pattern (36 bp):
AAATTTCCAAGAGAAACTTCAAATGGTATGTTTAGG
Found at i:63683893 original size:40 final size:40
Alignment explanation
Indices: 63683808--63683960 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
63683798 GGATATAGCG
* * * * *
63683808 ACTCGCTCAAAAGCCTTCAGGACATAGCCCGGTTAT--AA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGAA
* *
63683846 TAGCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGAA
1 -A-CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGAA
* * **
63683888 ACTCGCATAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGAA
*
63683928 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
63683961 CATCATTTGA
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
39 4 0.04
40 75 0.82
41 11 0.12
42 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGAA
Found at i:63689307 original size:40 final size:40
Alignment explanation
Indices: 63689247--63689430 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
63689237 TATTCGAAAG
*
63689247 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* *
63689287 ATATCCGGACTAAGATCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCT-AG-TGACT
* * *
63689327 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
63689367 ATATCCGGGCTAA-CTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
63689407 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
63689431 CTTGTGCAAG
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 2 0.02
40 118 0.95
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:63689387 original size:80 final size:80
Alignment explanation
Indices: 63689247--63689430 Score: 248
Period size: 80 Copynumber: 2.3 Consensus size: 80
63689237 TATTCGAAAG
* * *
63689247 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGATCCGAAGGCA
* *
63689312 TTTGTG-TGAGTTG-CT
66 TTTATGCT-AG-TGACC
* * *
63689327 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAA-CTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGAT-CCGAAGGC
63689391 ATTTATGCTAGTGACC
65 ATTTATGCTAGTGACC
63689407 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
63689431 CTTGTGCAAG
Statistics
Matches: 93, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
79 3 0.03
80 89 0.96
81 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGATCCGAAGGCA
TTTATGCTAGTGACC
Found at i:63691562 original size:2 final size:2
Alignment explanation
Indices: 63691555--63691597 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
63691545 TGACATTCTC
63691555 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63691597 A
1 A
63691598 ATCCCATACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:63692982 original size:43 final size:43
Alignment explanation
Indices: 63692901--63692984 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
63692891 ATATCGTACA
* * **
63692901 ATGCCAACGTCCTAGACATGGTCTTACATGTAGCCACATATTG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATTG
63692944 ATGCC-ACTGTCCCAGACAGGGTCTTAC-TCGTAAACACATAT
1 ATGCCAAC-GTCCCAGACAGGGTCTTACAT-GTAAACACATAT
63692985 CGAAATCACA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 3 0.09
43 32 0.91
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATTG
Found at i:63694585 original size:21 final size:22
Alignment explanation
Indices: 63694561--63694610 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 22
63694551 AAAAATATAT
**
63694561 AAAATTATTAAATATT-CCTTA
1 AAAATTATTAAATATTAAATTA
63694582 AAAA-TATTAAATATTAAATTA
1 AAAATTATTAAATATTAAATTA
63694603 AAAATTAT
1 AAAATTAT
63694611 ATAATTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.44
21 11 0.44
22 3 0.12
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAATTATTAAATATTAAATTA
Found at i:63696135 original size:16 final size:17
Alignment explanation
Indices: 63696104--63696142 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
63696094 GAAAATGAAG
*
63696104 AAAAATGAAAGCTTTCT
1 AAAAATGAAAGCTTTCC
*
63696121 AAAAATTAAAG-TTTCC
1 AAAAATGAAAGCTTTCC
63696137 AAAAAT
1 AAAAAT
63696143 AAAAAATTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.28
Consensus pattern (17 bp):
AAAAATGAAAGCTTTCC
Found at i:63710930 original size:48 final size:48
Alignment explanation
Indices: 63710859--63711175 Score: 537
Period size: 48 Copynumber: 6.6 Consensus size: 48
63710849 AGATGAATAT
*
63710859 ATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
63710907 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
63710955 ATATGTATATGAGGTAAAGCCAAATGGCTAATGT-AAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
63711002 ATACGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
63711050 ACATGTATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
63711098 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
63711146 ATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
63711176 GTGATTCGGC
Statistics
Matches: 252, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 43 0.17
48 209 0.83
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.29
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:63711100 original size:143 final size:144
Alignment explanation
Indices: 63710863--63711178 Score: 535
Period size: 143 Copynumber: 2.2 Consensus size: 144
63710853 GAATATATAT
* * * * *
63710863 GTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
1 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGACATGTATACGTGGTAAAGCC
*
63710928 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCAAATGGCTAATG-TAAA
66 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCAAATGGCTAATGCGAAA
63710992 TATGTATGAGATAC
131 TATGTATGAGATAC
63711006 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGACATGTATACGTGGTAAAGCC
1 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGACATGTATACGTGGTAAAGCC
* * *
63711071 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAA
66 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCAAATGGCTAATGCGAAA
*
63711136 TATGTATGAGATAT
131 TATGTATGAGATAC
63711150 GTATATGTGGTAAAGCCGAATGGCTAGTG
1 GTATATGTGGTAAAGCCGAATGGCTAGTG
63711179 ATTCGGCTAG
Statistics
Matches: 162, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
143 117 0.72
144 45 0.28
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (144 bp):
GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGACATGTATACGTGGTAAAGCC
GAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCAAATGGCTAATGCGAAA
TATGTATGAGATAC
Found at i:63711398 original size:37 final size:37
Alignment explanation
Indices: 63711348--63711487 Score: 262
Period size: 37 Copynumber: 3.8 Consensus size: 37
63711338 GGAAATATAT
*
63711348 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
63711385 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
63711422 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
63711459 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
63711488 GGACTATTCG
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:63714630 original size:53 final size:54
Alignment explanation
Indices: 63714562--63714848 Score: 321
Period size: 53 Copynumber: 5.3 Consensus size: 54
63714552 TTTCCTTTTT
* * *
63714562 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * *
63714615 GAACTCACCAATGCCATGCCTTGGCATGGTCTTATATGG-AACCTTTGCCTTATA
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
*
63714669 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-
1 G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * ** *
63714723 GAACTCACTAATGCCATGCCTTGGTATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* * * * * *
63714777 GTAACTCATCAATGCTATGTCTTGACATGGTCTTACATGATTTTCTTACCTTATA
1 G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* *
63714832 GAACTTATCAATGCCAT
1 GAACTCACCAATGCCAT
63714849 TCCTTGGCAA
Statistics
Matches: 195, Mismatches: 31, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
52 5 0.03
53 85 0.44
54 17 0.09
55 84 0.43
56 4 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:63714698 original size:55 final size:53
Alignment explanation
Indices: 63714573--63714848 Score: 297
Period size: 55 Copynumber: 5.1 Consensus size: 53
63714563 AACTTACCAT
* * *
63714573 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTAACCTTGCCTTATGAACTCATCAA
* * *
63714626 TGCCATGCCTTGGCATGGTCTTATATGG-AACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTAACC-TTGCCTTAT-G-AACTCATCAA
*
63714681 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCA-CTAA
1 TGCCATGTCTTGACATGGTCTTACATGGTAACCTTGCCTTATGAACTCATC-AA
* ** *
63714734 TGCCATGCCTTGGTATGGTCTTACATGG-GACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTAACC-TTGCCTTAT-G-AACTCATCAA
* * *** * *
63714789 TGCTATGTCTTGACATGGTCTTACATGATTTTCTTACCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTAACCTTGCCTTAT-GAACTCATCAA
63714843 TGCCAT
1 TGCCAT
63714849 TCCTTGGCAA
Statistics
Matches: 187, Mismatches: 26, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
52 6 0.03
53 75 0.40
54 17 0.09
55 84 0.45
56 5 0.03
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGTAACCTTGCCTTATGAACTCATCAA
Found at i:63714767 original size:108 final size:108
Alignment explanation
Indices: 63714573--63714857 Score: 437
Period size: 108 Copynumber: 2.6 Consensus size: 108
63714563 AACTTACCAT
* *
63714573 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACTAATGCCATGCCTTG
*
63714638 GCATGGTCTTATATGGAACCTTTGCCTTATAGTAACTCATCAA
66 GCATGGTCTTACATGGAACCTTTGCCTTATAGTAACTCATCAA
63714681 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACTAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACTAATGCCATGCCTTG
* *
63714746 GTATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
66 GCATGGTCTTACATGGAACCTTTGCCTTATAGTAACTCATCAA
* * * * * * *
63714789 TGCTATGTCTTGACATGGTCTTACATGATTTTCTTACCTTATAGAACTTA-TCAATGCCATTCCT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACT-AATGCCATGCCT
63714853 TGGCA
64 TGGCA
63714858 AGTCATAGCT
Statistics
Matches: 162, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
108 141 0.87
109 21 0.13
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACTAATGCCATGCCTTG
GCATGGTCTTACATGGAACCTTTGCCTTATAGTAACTCATCAA
Found at i:63715392 original size:50 final size:50
Alignment explanation
Indices: 63715319--63715420 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
63715309 CTAGGATCTA
63715319 AAACATCATATTTCACTTATTTAATTAATGTACTATTCAAAACATTCCCT
1 AAACATCATATTTCACTTATTTAATTAATGTACTATTCAAAACATTCCCT
* *
63715369 AAACATCATATTTCACTTATTTAATTAATTTACTATTCAAAATATTCCCT
1 AAACATCATATTTCACTTATTTAATTAATGTACTATTCAAAACATTCCCT
63715419 AA
1 AA
63715421 CTCAAACTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.39, C:0.19, G:0.01, T:0.41
Consensus pattern (50 bp):
AAACATCATATTTCACTTATTTAATTAATGTACTATTCAAAACATTCCCT
Found at i:63718622 original size:40 final size:40
Alignment explanation
Indices: 63718563--63718765 Score: 212
Period size: 40 Copynumber: 5.1 Consensus size: 40
63718553 TGAATGATAC
* *
63718563 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
63718603 CCGGGCTAAGTCCCTAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
63718643 TC-GGCCAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * ** *
63718682 CCGGGCTAAGACCCGAAGGCAGTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
63718722 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
63718762 CCGG
1 CCGG
63718766 TTAAATTCCA
Statistics
Matches: 134, Mismatches: 26, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
39 30 0.22
40 104 0.78
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:63725893 original size:2 final size:2
Alignment explanation
Indices: 63725886--63725911 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
63725876 CGGCTCTAGC
63725886 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
63725912 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63726877 original size:40 final size:40
Alignment explanation
Indices: 63726782--63726984 Score: 239
Period size: 40 Copynumber: 5.1 Consensus size: 40
63726772 TGAATGATAC
* *
63726782 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
63726822 -CGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
63726861 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
63726901 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
63726941 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
63726981 CCGG
1 CCGG
63726985 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
39 40 0.29
40 97 0.70
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:63729904 original size:40 final size:40
Alignment explanation
Indices: 63729819--63729969 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
63729809 AATTGAATGA
* * * **
63729819 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
63729859 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
63729900 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
63729939 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
63729970 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:63729983 original size:40 final size:40
Alignment explanation
Indices: 63729856--63729985 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
63729846 ATGCTGGAAA
* * *
63729856 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
63729896 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
63729936 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63729976 TTATATCCGG
1 TTATATCCGG
63729986 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63737893 original size:40 final size:40
Alignment explanation
Indices: 63737808--63737958 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
63737798 AATTGAATGA
* * * *
63737808 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
63737848 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
63737889 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
63737928 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
63737959 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:63737972 original size:40 final size:40
Alignment explanation
Indices: 63737845--63737974 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
63737835 ATGCTGGAAA
* * *
63737845 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
63737885 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
63737925 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63737965 TTATATCCGG
1 TTATATCCGG
63737975 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63737973 original size:80 final size:80
Alignment explanation
Indices: 63737807--63737974 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
63737797 AAATTGAATG
* *
63737807 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
63737872 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
63737887 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
63737950 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
63737967 ATATCCGG
1 ATATCCGG
63737975 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:63742309 original size:40 final size:40
Alignment explanation
Indices: 63742231--63742454 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
63742221 ACCCAAGTAT
* *
63742231 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
63742270 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
63742310 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
63742350 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
63742393 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
63742433 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
63742455 CATCCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 12 0.07
40 117 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:63742427 original size:83 final size:80
Alignment explanation
Indices: 63742231--63742454 Score: 317
Period size: 83 Copynumber: 2.8 Consensus size: 80
63742221 ACCCAAGTAT
* * * *
63742231 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
63742295 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
63742310 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
63742374 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
63742393 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
63742455 CATCCGAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 67 0.52
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:63750041 original size:39 final size:40
Alignment explanation
Indices: 63749951--63750172 Score: 301
Period size: 40 Copynumber: 5.5 Consensus size: 40
63749941 ACCCAAGTAT
* *
63749951 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
63749990 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
63750030 CTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
63750069 CTTCGGGACTTAGCCCGG-TATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
63750111 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
63750151 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
63750173 CATCCGAATA
Statistics
Matches: 164, Mismatches: 10, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 1 0.01
39 56 0.34
40 70 0.43
41 1 0.01
42 28 0.17
43 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:63771651 original size:93 final size:93
Alignment explanation
Indices: 63771520--63771690 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
63771510 ACCCATAAGT
* *
63771520 GAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
63771585 CGAGCTCGGATGCCTAGTTACATCTCCC
66 CGAGCTCGGATGCCTAGTTACATCTCCC
* * * *
63771613 GAACTCGAACTCAACTCAATGAGTTCG-GACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTCGAG-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
63771677 ACGAGTTCGGATGC
65 ACGAGCTCGGATGC
63771691 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCCC
Found at i:63771675 original size:46 final size:47
Alignment explanation
Indices: 63771512--63771687 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 47
63771502 TGTAACTCAC
* *
63771512 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTGCAT
* * *
63771558 CCATAAATGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-G-C-ATTTGCAT
*** * * *
63771608 -C-T-CCCGAACTCGAACTCAACTCAATGAGTTCGGA-CATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTGCAT
*
63771651 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
63771688 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 60 0.57
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTGCAT
Found at i:63774153 original size:15 final size:14
Alignment explanation
Indices: 63774092--63774144 Score: 61
Period size: 15 Copynumber: 3.6 Consensus size: 14
63774082 AGGAAACCGA
63774092 ATAAAGAAATCCAAG
1 ATAAAGAAATCC-AG
**
63774107 ATGGAGAAATCCAG
1 ATAAAGAAATCCAG
*
63774121 AATAAAGGAATCCAG
1 -ATAAAGAAATCCAG
63774136 ATAAAGAAA
1 ATAAAGAAA
63774145 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 10 0.32
15 21 0.68
ACGTcount: A:0.57, C:0.11, G:0.19, T:0.13
Consensus pattern (14 bp):
ATAAAGAAATCCAG
Found at i:63775645 original size:66 final size:68
Alignment explanation
Indices: 63775570--63775756 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
63775560 TAGTACCACT
*
63775570 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
63775632 CACG
65 CACG
63775636 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
63775701 ATCACG
63 ATCACG
63775707 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
63775757 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:63775681 original size:71 final size:71
Alignment explanation
Indices: 63775593--63775756 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63775583 CGATTTGTCT
63775593 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
63775658 CTTTCA
66 CTTTCA
63775664 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
63775729 CTTTCA
66 CTTTCA
63775735 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
63775757 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:63775794 original size:71 final size:70
Alignment explanation
Indices: 63775593--63775790 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
63775583 CGATTTGTCT
* * *
63775593 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
63775658 CTTTCA
65 CTTTCA
* * *
63775664 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
63775729 CTTTCA
65 CTTTCA
* *
63775735 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
63775791 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:63778982 original size:22 final size:22
Alignment explanation
Indices: 63778938--63778982 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
63778928 TCATATGCTT
*
63778938 TTGTAAAGTACATTTATAGAAA
1 TTGTAAAGTACATTTATACAAA
*
63778960 TTGTAAAGTACATTTATCCAAA
1 TTGTAAAGTACATTTATACAAA
63778982 T
1 T
63778983 CATATGCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (22 bp):
TTGTAAAGTACATTTATACAAA
Found at i:63779990 original size:32 final size:33
Alignment explanation
Indices: 63779953--63780024 Score: 87
Period size: 32 Copynumber: 2.2 Consensus size: 33
63779943 TTTGGTTCTA
*
63779953 AGGGATTTC-ACGATTTCG-TTCCTAATAGTTTT
1 AGGGATTTCAACGATTT-GATTCCTAAAAGTTTT
*
63779985 AGGGA-TTCAACGATTTGATTCGTAAAAGTTTT
1 AGGGATTTCAACGATTTGATTCCTAAAAGTTTT
*
63780017 ATGGATTT
1 AGGGATTT
63780025 TAAGAATATT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
31 4 0.12
32 28 0.82
33 2 0.06
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (33 bp):
AGGGATTTCAACGATTTGATTCCTAAAAGTTTT
Found at i:63780083 original size:16 final size:16
Alignment explanation
Indices: 63780049--63780096 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
63780039 AATACTAACA
* * *
63780049 ATTTAGGTATTTGAGG
1 ATTTAGGGATTTAAAG
63780065 ATTTAGGGATTTAAAG
1 ATTTAGGGATTTAAAG
63780081 ATTGTTAGGGATTTAA
1 A-T-TTAGGGATTTAA
63780097 TGAAAGATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 14 0.52
17 1 0.04
18 12 0.44
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (16 bp):
ATTTAGGGATTTAAAG
Found at i:63785926 original size:49 final size:49
Alignment explanation
Indices: 63785758--63786098 Score: 376
Period size: 49 Copynumber: 6.8 Consensus size: 49
63785748 TGAGGTCGCA
* * * * *
63785758 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* * * ** *
63785809 TGTGTAGTACAAAGTGCAAGCTACTACGTGTATCAGATGGTTAGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * * *
63785859 TATGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * * *
63785908 TGTGTAGTACTAAGTGCAGACTACTACATGTACCGGATAATTGGTCGCGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T--T-G-GTCACG
* *
63785962 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* *
63786011 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
63786060 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
63786099 GCTTTGGCTA
Statistics
Matches: 252, Mismatches: 32, Indels: 14
0.85 0.11 0.05
Matches are distributed among these distances:
49 129 0.51
50 44 0.17
51 32 0.13
52 1 0.00
53 2 0.01
54 44 0.17
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:63785993 original size:103 final size:98
Alignment explanation
Indices: 63785751--63786085 Score: 384
Period size: 103 Copynumber: 3.3 Consensus size: 98
63785741 TCTATTGTGA
* * ** * *
63785751 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAAAAACTGTGATCACGTGTGTAG
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACGTGTGTAG
* * * **
63785816 TACAAAGTGCA-AGCTACTACGTGTATCAGATGGTT
64 TACTAAGTGCAGA-CTACTACATGTACCAGATAATT
* * * * * *
63785851 AGATCACGTATGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCATGTGTGTAGT
1 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGT
*
63785916 ACTAAGTGCAGACTACTACATGTACCGGATAATT
65 ACTAAGTGCAGACTACTACATGTACCAGATAATT
*
63785950 GGTCGCGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCGTGTG
1 GGT--CG-CA--TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTG
* *
63786015 TAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
61 TAGTACTAAGTGCAGACTACTACATGTACCAGATAATT
*
63786053 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
63786086 TGCGTACCAG
Statistics
Matches: 201, Mismatches: 27, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
98 27 0.13
99 40 0.20
100 5 0.02
101 42 0.21
103 87 0.43
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (98 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGTA
CTAAGTGCAGACTACTACATGTACCAGATAATT
Found at i:63786093 original size:152 final size:150
Alignment explanation
Indices: 63785751--63786098 Score: 437
Period size: 152 Copynumber: 2.3 Consensus size: 150
63785741 TCTATTGTGA
* *
63785751 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAAAAACTGTGATCACGTGTGTAG
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAG
* **
63785816 TACAAAGTGCAAGCTACTACGTGTATCAGATGGTTAGATCACGTATGTAGTACTAAGTGCAGGCT
66 TACAAAGTGCAAGCTACTACGTGTACCAGATAATTAGATCACGTATGTAGTACTAAGTGCAGGCT
* *
63785881 ACTATGTGTACCGGATAATT
131 ACTACGTGTACCAGATAATT
*** * *** * * * *
63785901 GGTCATGTGTGTAGTACTAAGTGCAGACTACTACATGTACCGGATAATTGGTCGCGTCATGTGTG
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACT-GT-G-ATCACGTGTG
* * * * * *
63785966 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCGTGTGTAGTACTAAGTGCAG
63 TAGTACAAAGTGCAAGCTACTACGTGTACCAGATAATTAGATCACGTATGTAGTACTAAGTGCAG
63786030 GCTACTACGTGTACCAGATAATT
128 GCTACTACGTGTACCAGATAATT
*
63786053 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
63786099 GCTTTGGCTA
Statistics
Matches: 162, Mismatches: 33, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
150 38 0.23
151 2 0.01
152 82 0.51
153 40 0.25
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (150 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAG
TACAAAGTGCAAGCTACTACGTGTACCAGATAATTAGATCACGTATGTAGTACTAAGTGCAGGCT
ACTACGTGTACCAGATAATT
Found at i:63796286 original size:35 final size:35
Alignment explanation
Indices: 63796247--63796316 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
63796237 TAAGAGTATG
*
63796247 CCCAAAAATCAATCACGAGATGGTTGTAATTACAT
1 CCCAAAAATCAATCACGAGATGGTTGTAATAACAT
63796282 CCCAAAAATCAATCACGAGATGGTTGTAATAACAT
1 CCCAAAAATCAATCACGAGATGGTTGTAATAACAT
63796317 ACTTGGTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.24
Consensus pattern (35 bp):
CCCAAAAATCAATCACGAGATGGTTGTAATAACAT
Found at i:63800188 original size:51 final size:50
Alignment explanation
Indices: 63800131--63800244 Score: 131
Period size: 50 Copynumber: 2.3 Consensus size: 50
63800121 AATGATTTAT
* * *
63800131 TAATGCATGACTTCATTTACGATGCCAA-CTTTAACTATCATGAGAGTTACA
1 TAATGCATGACTTAATTTACGATG-CAATC-TTAACTAACATAAGAGTTACA
* * ** *
63800182 TAATGCATGTCATAATTTATTATGCAATCTTAACTAACATAAGAGTTTCA
1 TAATGCATGACTTAATTTACGATGCAATCTTAACTAACATAAGAGTTACA
63800232 TAATGCATGACTT
1 TAATGCATGACTT
63800245 TATTAAATGC
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
50 32 0.62
51 20 0.38
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (50 bp):
TAATGCATGACTTAATTTACGATGCAATCTTAACTAACATAAGAGTTACA
Found at i:63809934 original size:46 final size:46
Alignment explanation
Indices: 63809802--63810067 Score: 156
Period size: 46 Copynumber: 5.7 Consensus size: 46
63809792 TTTGTGTAAA
* * *
63809802 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGAG
* * ** * * *
63809848 CAAGTGTAAAACTATGTCT-GG--ATGGCATCAACATCCAGACGAGTG
1 CTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTCGAGACGAGAG
*
63809893 CTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGACGTA-AG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AGAG
* * * * * *
63809939 CCAATTTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGTG-T
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGAGAG
* * *
63809984 C-AGTGTAAGACCATGTCTGGGACATGGCATC-GACAC-AGTTATGCAAGAG
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAG--A--CGAGAG
*
63810033 TTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
63810068 ACCTTACCCA
Statistics
Matches: 168, Mismatches: 33, Indels: 33
0.72 0.14 0.14
Matches are distributed among these distances:
44 16 0.10
45 43 0.26
46 68 0.40
47 9 0.05
48 1 0.01
50 30 0.18
51 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGAG
Found at i:63812288 original size:51 final size:50
Alignment explanation
Indices: 63812212--63812385 Score: 190
Period size: 50 Copynumber: 3.5 Consensus size: 50
63812202 ATTGGTCGCA
* * * *
63812212 TGTGTAGTACTAAATGCAGGCTACTATGTGTACCCAATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAA-TTAGATCACG
* ** *
63812263 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTAGATCACG
* * ** * *
63812313 TGTGTAGTACTAAGTGTAGGCTACTACATGTACCGGATAATTGGTTGCAC-
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTAGAT-CACG
63812363 -GTGTAGTACTAAGTGCAGGCTAC
1 TGTGTAGTACTAAGTGCAGGCTAC
63812386 ATGCGCACCA
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 22 0.21
50 45 0.43
51 37 0.36
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTAGATCACG
Found at i:63814215 original size:27 final size:27
Alignment explanation
Indices: 63814185--63814264 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 27
63814175 CTCATATCTG
* *
63814185 TAGGCTAGCATTACTGAAATACCCTTA
1 TAGGGTAGAATTACTGAAATACCCTTA
* * *
63814212 TAGGGTAGAATTACTGAAATGCCCCTG
1 TAGGGTAGAATTACTGAAATACCCTTA
**
63814239 TAGGGTAGAATTACCAAAATACCCTT
1 TAGGGTAGAATTACTGAAATACCCTT
63814265 GGTTTGTAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.28
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATACCCTTA
Found at i:63814277 original size:27 final size:27
Alignment explanation
Indices: 63814247--63814344 Score: 126
Period size: 27 Copynumber: 3.6 Consensus size: 27
63814237 TGTAGGGTAG
63814247 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
63814274 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
63814301 AATTACCAAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCT-TGGTTTGTAA
**
63814328 AATTACTGAAATACCCT
1 AATTACCAAAATACCCT
63814345 CGACCTATAA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.03
27 56 0.92
28 3 0.05
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:63814278 original size:54 final size:54
Alignment explanation
Indices: 63814220--63814343 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 54
63814210 TATAGGGTAG
* * *
63814220 AATTACTGAAATGCCCCT-GTAGGGTAGAATTACCAAAATACC-CTTGGTTTGTAA
1 AATTACTGAAATACCCCTAGT-GGGTAAAATTACCAAAATACCTC-TGATTTGTAA
** ** *
63814274 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCTCTGATTTGTGA
1 AATTACTGAAATACCCCTAGTGGGTAAAATTACCAAAATACCTCTGATTTGTAA
63814328 AATTACTGAAATACCC
1 AATTACTGAAATACCC
63814344 TCGACCTATA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
54 55 0.95
55 3 0.05
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (54 bp):
AATTACTGAAATACCCCTAGTGGGTAAAATTACCAAAATACCTCTGATTTGTAA
Found at i:63814357 original size:27 final size:27
Alignment explanation
Indices: 63814327--63814387 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
63814317 CTGATTTGTG
63814327 AAATTACTGAAATACCCTCGACCTATA
1 AAATTACTGAAATACCCTCGACCTATA
*
63814354 AAATTACTGAAATACCCTCGACTTATA
1 AAATTACTGAAATACCCTCGACCTATA
*
63814381 ATATTAC
1 AAATTAC
63814388 CAAAGTACCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTATA
Found at i:63814396 original size:27 final size:27
Alignment explanation
Indices: 63814327--63814399 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
63814317 CTGATTTGTG
*
63814327 AAATTACTGAAATACCCTCGACCTATA
1 AAATTACTCAAATACCCTCGACCTATA
* *
63814354 AAATTACTGAAATACCCTCGACTTATA
1 AAATTACTCAAATACCCTCGACCTATA
*
63814381 ATATTAC-CAAAGTACCCTC
1 AAATTACTCAAA-TACCCTC
63814400 AATTTACAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
26 3 0.07
27 39 0.93
ACGTcount: A:0.40, C:0.26, G:0.07, T:0.27
Consensus pattern (27 bp):
AAATTACTCAAATACCCTCGACCTATA
Found at i:63814413 original size:27 final size:27
Alignment explanation
Indices: 63814393--63814694 Score: 415
Period size: 27 Copynumber: 11.2 Consensus size: 27
63814383 ATTACCAAAG
*
63814393 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
63814420 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
63814447 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
63814474 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
63814501 TACCCTCGATTTAAAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63814528 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* ***
63814555 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
63814582 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63814609 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
63814636 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
63814663 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
63814690 TACCC
1 TACCC
63814695 CTAGGGTGTT
Statistics
Matches: 253, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 253 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:63814440 original size:81 final size:81
Alignment explanation
Indices: 63814339--63814694 Score: 376
Period size: 81 Copynumber: 4.4 Consensus size: 81
63814329 ATTACTGAAA
** * ** * **** *
63814339 TACCCTCGACCTATAAAATTACTGAAATACCCTCGACTTATA-ATATTACCAAAGTACCCTCAAT
1 TACCCTCGATTTACAAAATTACTGATTTACCCTCGATTTATAGA-ATTACCGTTTTACCCTCGAT
*
63814403 TTACAGAATTACCGTTT
65 TTACAGAATTACCATTT
* * * * *
63814420 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGATTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
* *
63814485 TACAAAATTACTATTT
66 TACAGAATTACCATTT
* * *
63814501 TACCCTCGATTTAAAAAATTA-TCGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTACT-GATTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGAT
* **
63814565 TTATAGAATTATTATTT
65 TTACAGAATTACCATTT
* *
63814582 TACCCTCGATTTATAAAATTACT-ATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTACTGA-TTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGAT
* *
63814646 TTATAGAATTACCGTTT
65 TTACAGAATTACCATTT
* * *
63814663 TACCCTCGATTTACAGAATTACCGTTTTACCC
1 TACCCTCGATTTACAAAATTACTGATTTACCC
63814695 CTAGGGTGTT
Statistics
Matches: 231, Mismatches: 39, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
81 229 0.99
82 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTGATTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
TACAGAATTACCATTT
Found at i:63814975 original size:27 final size:26
Alignment explanation
Indices: 63814931--63814982 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63814921 CTCGCTGCAA
*
63814931 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
63814958 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
63814983 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:63816091 original size:124 final size:124
Alignment explanation
Indices: 63815869--63816093 Score: 308
Period size: 124 Copynumber: 1.8 Consensus size: 124
63815859 GAATTATGTG
* * * * * * *
63815869 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCAG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCAG
* **
63815934 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
* *
63815993 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCAG
* *
63816058 GCTAAGTCTCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
63816094 CCGGGTTAAG
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
123 3 0.03
124 83 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.36
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCAG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:63816215 original size:40 final size:40
Alignment explanation
Indices: 63816088--63816217 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
63816078 TTGCTGGAAA
* * *
63816088 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
63816128 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
63816168 TTCTATCCGGGCTAAGACCCGAAGGCATTCATGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63816208 TTATATCCGG
1 TTATATCCGG
63816218 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63817693 original size:25 final size:25
Alignment explanation
Indices: 63817662--63817727 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
63817652 CCTGATACTG
*
63817662 TTCTGATTCTAATTCTGTCACCTAA
1 TTCTGATTCTGATTCTGTCACCTAA
*
63817687 TTCTGATTCTGATTCTGTCACCTGA
1 TTCTGATTCTGATTCTGTCACCTAA
63817712 TTCTGATTCTGATTCT
1 TTCTGATTCTGATTCT
63817728 CATTTTGGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.18, C:0.23, G:0.12, T:0.47
Consensus pattern (25 bp):
TTCTGATTCTGATTCTGTCACCTAA
Found at i:63817695 original size:6 final size:6
Alignment explanation
Indices: 63817631--63817727 Score: 58
Period size: 6 Copynumber: 15.8 Consensus size: 6
63817621 TTGCATTCAC
* * *
63817631 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG -TTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
63817679 -TCACCTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCT
63817728 CATTTTGGTT
Statistics
Matches: 69, Mismatches: 12, Indels: 20
0.68 0.12 0.20
Matches are distributed among these distances:
5 8 0.12
6 50 0.72
7 8 0.12
8 3 0.04
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:63818550 original size:22 final size:22
Alignment explanation
Indices: 63818519--63818569 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
63818509 TGGCACACCG
*
63818519 AGTCTCCGGCGCCGAATCCTTA
1 AGTCTTCGGCGCCGAATCCTTA
63818541 AGTCTTCGGCGCCGAATCCTTA
1 AGTCTTCGGCGCCGAATCCTTA
63818563 AGTCTTC
1 AGTCTTC
63818570 TGAATACTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (22 bp):
AGTCTTCGGCGCCGAATCCTTA
Found at i:63819650 original size:27 final size:27
Alignment explanation
Indices: 63819620--63819702 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 27
63819610 ATCTCATATC
* *
63819620 TGTAGGCTAGCATTACTGAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
* *
63819647 TGTAGGGTAGAATTACTGAAATGCCCC
1 TGTAGGGTAGAATTACTGAAATACCCT
*
63819674 TGTAGGGTAGAATTACTAAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
63819701 TG
1 TG
63819703 GTTTGTAAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCT
Found at i:63819714 original size:27 final size:27
Alignment explanation
Indices: 63819684--63819839 Score: 122
Period size: 27 Copynumber: 5.9 Consensus size: 27
63819674 TGTAGGGTAG
* *
63819684 AATTACTAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
63819711 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
*
63819738 AATTACCAAAAT--CCTCTGATTTGTGA
1 AATTACCAAAATACCCT-TGATTTGTAA
** * ** *
63819764 AATTACTGAAATACCCTCGACCT-AAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
63819790 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
63819817 AATTACCAAAGTACCCTCGATTT
1 AATTACCAAAATACCCTTGATTT
63819840 ACAGAATTAT
Statistics
Matches: 105, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
25 2 0.02
26 40 0.38
27 60 0.57
28 3 0.03
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:63819728 original size:54 final size:54
Alignment explanation
Indices: 63819619--63819728 Score: 123
Period size: 54 Copynumber: 2.0 Consensus size: 54
63819609 AATCTCATAT
* * * ** *
63819619 CTGTAGGCTAGCATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGCTAGAATTACTAAAATACCCTTGTAGGGTAAAATTACCAAAATACCC
* **
63819673 CTGTAGGGTAGAATTACTAAAATACCCTTGGT-TTGTAAAATTACCAAAATACCC
1 CTGTAGGCTAGAATTACTAAAATACCCTT-GTAGGGTAAAATTACCAAAATACCC
63819727 CT
1 CT
63819729 AGTTTGTAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
54 44 0.96
55 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (54 bp):
CTGTAGGCTAGAATTACTAAAATACCCTTGTAGGGTAAAATTACCAAAATACCC
Found at i:63819792 original size:26 final size:27
Alignment explanation
Indices: 63819763--63819836 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 27
63819753 CTGATTTGTG
63819763 AAATTACTGAAATACCCTCGACCT-AA
1 AAATTACTGAAATACCCTCGACCTGAA
* *
63819789 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGAA
*
63819816 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
63819837 TTTACAGAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 26 0.60
27 17 0.40
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGAA
Found at i:63819847 original size:27 final size:27
Alignment explanation
Indices: 63819828--63820101 Score: 334
Period size: 27 Copynumber: 10.2 Consensus size: 27
63819818 ATTACCAAAG
*
63819828 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
63819855 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63819882 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
63819909 TACCCTCGATTTAAAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
63819936 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
63819963 TACCCTCGATTTA-AAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63819989 TACACTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
63820016 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * * **
63820043 TGCCCTCGATTTATAAAATTTCTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
63820070 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
63820097 TACCC
1 TACCC
63820102 CTAGGGTGTT
Statistics
Matches: 223, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 22 0.10
27 201 0.90
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:63819997 original size:134 final size:135
Alignment explanation
Indices: 63819801--63820101 Score: 433
Period size: 134 Copynumber: 2.2 Consensus size: 135
63819791 ATTACTGAAA
* ** *** * * *
63819801 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACACTCGATT
*
63819866 TACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAAAAAATTAC
66 TACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTAAAAAATTAC
63819931 TATTT
131 TATTT
* *
63819936 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTA-AAAATTACCGTTTTACACTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACACTCGATT
* * * * *
63820000 TATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTGCCCTCGATTTATAAAATTTC
66 TACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTAAAAAATTAC
63820065 TATTT
131 TATTT
*
63820070 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACCATTTTACCC
63820102 CTAGGGTGTT
Statistics
Matches: 146, Mismatches: 20, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
134 114 0.78
135 32 0.22
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (135 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACACTCGATT
TACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTAAAAAATTAC
TATTT
Found at i:63821792 original size:27 final size:26
Alignment explanation
Indices: 63821762--63821844 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 26
63821752 ATCTCATATC
*
63821762 TGTAGGCTAGCATTACTGAAATACCCT
1 TGTAGG-TAGAATTACTGAAATACCCT
*
63821789 TGTAAGGTAGAATTACTGAAATGTCCC-
1 TGT-AGGTAGAATTACTGAAAT-ACCCT
**
63821816 TGTAGGGTAGAATTACCAAAATACCCT
1 TGTA-GGTAGAATTACTGAAATACCCT
63821843 TG
1 TG
63821845 GTTTGTAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
26 4 0.09
27 37 0.79
28 6 0.13
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
TGTAGGTAGAATTACTGAAATACCCT
Found at i:63821856 original size:27 final size:27
Alignment explanation
Indices: 63821826--63821982 Score: 142
Period size: 27 Copynumber: 5.9 Consensus size: 27
63821816 TGTAGGGTAG
*
63821826 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
63821853 AATTACCAAAATACCCAT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
*
63821880 AATTA-CAAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCT-TGATTTGTAA
* * ** *
63821906 CATTA-CAGAAATACCCTCGACCTATAA
1 AATTACCA-AAATACCCTTGATTTGTAA
** *
63821933 AATTACTGAAATACCCTTGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
63821960 AATTACCAAAGTACCCTCGATTT
1 AATTACCAAAATACCCTTGATTT
63821983 ACAGAATTAC
Statistics
Matches: 103, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
25 2 0.02
26 20 0.19
27 78 0.76
28 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:63821990 original size:27 final size:27
Alignment explanation
Indices: 63821971--63822299 Score: 408
Period size: 27 Copynumber: 12.2 Consensus size: 27
63821961 ATTACCAAAG
*
63821971 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
63821998 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
63822025 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
63822052 TACCCTTGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
63822079 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
63822106 TACCCTCGATTTAAAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
63822133 TACCCTCGATTTATAGAAATACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
63822160 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * * *
63822187 TACCCTCAATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
63822214 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
63822241 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
63822268 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
63822295 TACCC
1 TACCC
63822300 CTAGGGTGTT
Statistics
Matches: 266, Mismatches: 34, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 265 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:63822322 original size:81 final size:81
Alignment explanation
Indices: 63821957--63822299 Score: 472
Period size: 81 Copynumber: 4.2 Consensus size: 81
63821947 CCTTGACTTG
*** * * * * **
63821957 TAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACCG
1 TAAAATTACCATTTTACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACTA
63822022 TTTTACCCTCGATTTA
66 TTTTACCCTCGATTTA
* *
63822038 TAAAATTACTATTTTACCCTTGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACTA
1 TAAAATTACCATTTTACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACTA
63822103 TTTTACCCTCGATTTA
66 TTTTACCCTCGATTTA
* * * * *
63822119 AAAAATTATCGTTTTACCCTCGATTTATAGAAA-TACCGTTTTACCCTCAATTTACAGAATTACT
1 TAAAATTACCATTTTACCCTCGATTTATA-AAATTACTGTTTTACCCTCGATTTACAGAATTACT
*
63822183 ATTTTACCCTCAATTTA
65 ATTTTACCCTCGATTTA
* * * * *
63822200 TAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTG
1 TAAAATTACCATTTTACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACTA
63822265 TTTTACCCTCGATTTA
66 TTTTACCCTCGATTTA
63822281 TAAAATTACCATTTTACCC
1 TAAAATTACCATTTTACCC
63822300 CTAGGGTGTT
Statistics
Matches: 229, Mismatches: 31, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
80 2 0.01
81 224 0.98
82 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.40
Consensus pattern (81 bp):
TAAAATTACCATTTTACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACTA
TTTTACCCTCGATTTA
Found at i:63822627 original size:2 final size:2
Alignment explanation
Indices: 63822620--63822647 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
63822610 GCTTCGCCAC
63822620 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63822648 CTGTTCTGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63822869 original size:12 final size:12
Alignment explanation
Indices: 63822852--63822899 Score: 62
Period size: 12 Copynumber: 3.9 Consensus size: 12
63822842 AACTGAACCG
63822852 ATTCTGATTCTA
1 ATTCTGATTCTA
*
63822864 ATTCTG-TCACCTA
1 ATTCTGAT--TCTA
63822877 ATTCTGATTCTA
1 ATTCTGATTCTA
63822889 ATTCTGATTCT
1 ATTCTGATTCT
63822900 CATTTTGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
11 1 0.03
12 20 0.65
13 9 0.29
14 1 0.03
ACGTcount: A:0.23, C:0.21, G:0.08, T:0.48
Consensus pattern (12 bp):
ATTCTGATTCTA
Found at i:63824796 original size:26 final size:26
Alignment explanation
Indices: 63824767--63824845 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 26
63824757 CTCATATTTG
* *
63824767 TAGGCTAGCATTACTGAAATACCCTT
1 TAGGGTAGAATTACTGAAATACCCTT
* *
63824793 TAGGGTAGAATTACTGAAATGCCCCTA
1 TAGGGTAGAATTACTGAAAT-ACCCTT
**
63824820 TAGGGTAGAATTACCAAAATACCCTT
1 TAGGGTAGAATTACTGAAATACCCTT
63824846 GGTTTGTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 22 0.50
27 22 0.50
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (26 bp):
TAGGGTAGAATTACTGAAATACCCTT
Found at i:63824858 original size:27 final size:27
Alignment explanation
Indices: 63824828--63824985 Score: 149
Period size: 27 Copynumber: 5.9 Consensus size: 27
63824818 TATAGGGTAG
*
63824828 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
63824855 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
*
63824882 AATTACCAAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCT-TGATTTGTAA
** * ** *
63824909 AATTACTGAAATACCCTCGACCTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
63824936 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
63824963 AATTACCAAAGTACCCTCGATTT
1 AATTACCAAAATACCCTTGATTT
63824986 ACAGAATTAC
Statistics
Matches: 110, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.02
27 104 0.95
28 4 0.04
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:63824993 original size:27 final size:27
Alignment explanation
Indices: 63824947--63825020 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
63824937 ATTACTGAAA
63824947 TACCCTCGACTTGTA-A-AATTACCAAAG
1 TACCCTCGA-TT-TACAGAATTACCAAAG
****
63824974 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCAAAG
63825001 TACCCTCGATTTACAGAATT
1 TACCCTCGATTTACAGAATT
63825021 GCTGTTTTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.05
26 3 0.07
27 36 0.88
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCAAAG
Found at i:63825005 original size:54 final size:54
Alignment explanation
Indices: 63824920--63825275 Score: 343
Period size: 54 Copynumber: 6.6 Consensus size: 54
63824910 ATTACTGAAA
** * *** * * ***
63824920 TACCCTCGACCTATAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
* * * * * **
63824974 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTGCTGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
** * * * *
63825028 TACCCTCGATTTATAAAATTACTTTTTTACCATCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
* * * * *
63825082 TACCCTTGATTTAAAAAATTACCGTTTTACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
** * * ** * *
63825136 TACTTTCGATTTACAGAATTACTATTTTAGCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
* * *
63825190 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
*
63825244 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACCGTTTTACCC
63825276 CTAGGGTGTT
Statistics
Matches: 246, Mismatches: 56, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 246 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
Found at i:63825005 original size:81 final size:81
Alignment explanation
Indices: 63824920--63825265 Score: 388
Period size: 81 Copynumber: 4.3 Consensus size: 81
63824910 ATTACTGAAA
** ** * * ****
63824920 TACCCTCGACCTATAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTGATTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
*
63824985 TACAGAATTACCGTTT
66 TACAGAATTACCATTT
* * * * ** *
63825001 TACCCTCGATTTACAGAATTGCTGTTTTACCCTCGATTTATAAAATTACTTTTTTACCATCGATT
1 TACCCTCGATTTATAAAATTACTGATTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
*
63825066 TACAGAATTACTATTT
66 TACAGAATTACCATTT
* * * * * * **
63825082 TACCCTTGATTTAAAAAATTACCGTTTTACCCTCGATTTATAGAATTATCGTTTTACTTTCGATT
1 TACCCTCGATTTATAAAATTACTGATTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
*
63825147 TACAGAATTACTATTT
66 TACAGAATTACCATTT
* * *
63825163 TAGCCTCGATTTATAAAATTACT-ATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGAT
1 TACCCTCGATTTATAAAATTACTGA-TTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGAT
*
63825227 TTATAGAATTACCATTT
65 TTACAGAATTACCATTT
63825244 TACCCTCGATTTATAAAATTAC
1 TACCCTCGATTTATAAAATTAC
63825266 CATTTTACCC
Statistics
Matches: 223, Mismatches: 41, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
81 223 1.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACTGATTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
TACAGAATTACCATTT
Found at i:63825027 original size:27 final size:27
Alignment explanation
Indices: 63824974--63825275 Score: 363
Period size: 27 Copynumber: 11.2 Consensus size: 27
63824964 ATTACCAAAG
* *
63824974 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
63825001 TACCCTCGATTTACAGAATTGCTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
63825028 TACCCTCGATTTATAAAATTACTTTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * *
63825055 TACCATCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * * *
63825082 TACCCTTGATTTAAAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
63825109 TACCCTCGATTTATAGAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACT-GTTT
** * *
63825136 TACTTTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * *
63825163 TAGCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTATAGAATTACTGTTT
63825190 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
**
63825217 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACTGTTT
* **
63825244 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACTGTTT
63825271 TACCC
1 TACCC
63825276 CTAGGGTGTT
Statistics
Matches: 238, Mismatches: 35, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
27 237 1.00
28 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:63825271 original size:81 final size:81
Alignment explanation
Indices: 63824974--63825275 Score: 417
Period size: 81 Copynumber: 3.7 Consensus size: 81
63824964 ATTACCAAAG
* * * * **
63824974 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTGCTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
* *
63825039 TATAAAATTACTTTTT
66 TATAGAATTACTGTTT
* * * * *
63825055 TACCATCGATTTACAGAATTACTATTTTACCCTTGATTTAAAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
63825120 TATAGAATTA-TCGTTT
66 TATAGAATTACT-GTTT
** * * *
63825136 TACTTTCGATTTACAGAATTACTATTTTAGCCTCGATTTATAAAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
63825201 TATAGAATTACTGTTT
66 TATAGAATTACTGTTT
*
63825217 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCC
63825276 CTAGGGTGTT
Statistics
Matches: 196, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 194 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
TATAGAATTACTGTTT
Found at i:63825555 original size:27 final size:26
Alignment explanation
Indices: 63825511--63825562 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63825501 CTCGCTGCAA
*
63825511 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
63825538 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
63825563 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:63825671 original size:27 final size:26
Alignment explanation
Indices: 63825619--63825678 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
63825609 ATATATATAT
*
63825619 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
63825645 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
63825672 ATATCTG
1 ATATCTG
63825679 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:63825828 original size:25 final size:25
Alignment explanation
Indices: 63825825--63825894 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
63825815 TCACCTGATA
*
63825825 CTGATTCTGATTCTAATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
*
63825850 CTAATTCTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
63825875 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
63825895 CATTTTGGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.19, C:0.23, G:0.13, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:63825832 original size:31 final size:31
Alignment explanation
Indices: 63825797--63825894 Score: 127
Period size: 31 Copynumber: 3.4 Consensus size: 31
63825787 TTGCATTCAC
*
63825797 ATTCTGATTTTGATTCTGTCACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
63825828 ATTCTGATTCTAATTCTGTCACC---TA---
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
63825853 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
63825884 ATTCTGATTCT
1 ATTCTGATTCT
63825895 CATTTTGGTT
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
25 22 0.39
28 3 0.05
31 32 0.56
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.46
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:63825836 original size:6 final size:6
Alignment explanation
Indices: 63825797--63825894 Score: 58
Period size: 6 Copynumber: 15.8 Consensus size: 6
63825787 TTGCATTCAC
* * * *
63825797 ATTCTG ATTTTG ATTCTG -TCACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
63825846 -TCACCTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCT
63825895 CATTTTGGTT
Statistics
Matches: 70, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
5 3 0.04
6 56 0.80
7 8 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:63827824 original size:27 final size:27
Alignment explanation
Indices: 63827766--63827832 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
63827756 AATCTCATAT
* * *
63827766 CTGTAGGCTAGCATTACTGAAATAACC
1 CTGTAGGGTAGAAATACTGAAATAACC
* **
63827793 TTGTAGGGTAGAAATACTGAAATGCCC
1 CTGTAGGGTAGAAATACTGAAATAACC
63827820 CTGTAGGGTAGAA
1 CTGTAGGGTAGAA
63827833 TTACCAAAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (27 bp):
CTGTAGGGTAGAAATACTGAAATAACC
Found at i:63827861 original size:27 final size:27
Alignment explanation
Indices: 63827831--63827980 Score: 149
Period size: 27 Copynumber: 5.6 Consensus size: 27
63827821 TGTAGGGTAG
*
63827831 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
63827858 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
63827885 AATTACCAAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCT-TGATTTGTAA
** * ** *
63827912 AATTACTGAAATACCCTCGACCTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
63827939 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
63827966 AATTACCAAAGTACC
1 AATTACCAAAATACC
63827981 ATCGATTTAC
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
26 2 0.02
27 98 0.95
28 3 0.03
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:63827996 original size:27 final size:27
Alignment explanation
Indices: 63827977--63828303 Score: 368
Period size: 27 Copynumber: 12.1 Consensus size: 27
63827967 ATTACCAAAG
* *
63827977 TACCATCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
63828004 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
63828031 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
63828058 TACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* ** *
63828085 TACCCTCAATTTACAGAATTACTATAT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * *
63828112 TACCATCGATTTAAAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63828139 TACCCTCGATTTATA-AATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
63828165 TACCCTCGATTTATAGTATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
63828192 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
63828219 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63828246 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
63828273 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
63828300 TACC
1 TACC
63828304 ACTAGGGTGT
Statistics
Matches: 266, Mismatches: 33, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 24 0.09
27 242 0.91
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:63828024 original size:81 final size:81
Alignment explanation
Indices: 63827939--63828303 Score: 396
Period size: 81 Copynumber: 4.5 Consensus size: 81
63827929 CGACCTATAA
** * * * *** * *
63827939 AATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCATCGATTTACAGAATTA-TCGTT
1 AATTACTGATTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACT-ATT
*
63828003 TTACCCTCGATTTACAG
65 TTACCCTCAATTTACAG
* * * * * * * *
63828020 AATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACTGTTT
1 AATTACTGATTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
63828085 TACCCTCAATTTACAG
66 TACCCTCAATTTACAG
* * * * *
63828101 AATTACT-ATATTACCATCGATTTAAAAAATTACTGTTTTACCCTCGATTTATA-AATTACCATT
1 AATTACTGAT-TTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATT
* *
63828164 TTACCCTCGATTTATAG
65 TTACCCTCAATTTACAG
*
63828181 TATTACT-ATTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATT
1 AATTACTGA-TTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATT
*
63828245 TTACCCTCAATTTACAA
65 TTACCCTCAATTTACAG
* * *
63828262 AATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACC
1 AATTACTGATTTACCCTCGATTTATAAAATTACTATTTTACC
63828304 ACTAGGGTGT
Statistics
Matches: 240, Mismatches: 39, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
80 70 0.29
81 169 0.70
82 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.39
Consensus pattern (81 bp):
AATTACTGATTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
TACCCTCAATTTACAG
Found at i:63828868 original size:6 final size:6
Alignment explanation
Indices: 63828829--63828926 Score: 58
Period size: 6 Copynumber: 15.8 Consensus size: 6
63828819 TTGCATTCAC
* * * *
63828829 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
63828878 -TCACCTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCT
63828927 CATTTTGGTT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
5 4 0.06
6 55 0.80
7 7 0.10
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:63828888 original size:25 final size:25
Alignment explanation
Indices: 63828860--63828926 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
63828850 CCTGATACTG
*
63828860 ATTCTGATTCTAATTTTGTCACCTA
1 ATTCTGATTCTAATTCTGTCACCTA
* *
63828885 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTAATTCTGTCACCTA
*
63828910 ATTCTGATTCTGATTCT
1 ATTCTGATTCTAATTCT
63828927 CATTTTGGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.19, C:0.21, G:0.12, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTAATTCTGTCACCTA
Found at i:63828920 original size:31 final size:30
Alignment explanation
Indices: 63828829--63828926 Score: 107
Period size: 31 Copynumber: 3.4 Consensus size: 30
63828819 TTGCATTCAC
* *
63828829 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGAT-CTG
* *
63828860 ATTCTGATTCTAATTTTGTCACCT-A----
1 ATTCTGATTCTGATTCTGTCACCTGATCTG
63828885 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGA-TCTG
63828916 ATTCTGATTCT
1 ATTCTGATTCT
63828927 CATTTTGGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
25 22 0.40
26 1 0.02
30 1 0.02
31 31 0.56
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACCTGATCTG
Found at i:63829973 original size:25 final size:25
Alignment explanation
Indices: 63829945--63829995 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
63829935 TATATACAAT
63829945 ATGGTAAGCAAATATGTTTAAAGTG
1 ATGGTAAGCAAATATGTTTAAAGTG
63829970 ATGGTAAGCAAATATGTTTAAAGTG
1 ATGGTAAGCAAATATGTTTAAAGTG
63829995 A
1 A
63829996 ATGACATGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.04, G:0.24, T:0.31
Consensus pattern (25 bp):
ATGGTAAGCAAATATGTTTAAAGTG
Found at i:63832282 original size:27 final size:27
Alignment explanation
Indices: 63832153--63832362 Score: 201
Period size: 27 Copynumber: 7.8 Consensus size: 27
63832143 GTTTACCAAG
* **
63832153 TTACCAAAATACCCTTGATTTACAAAA
1 TTACCAAAATACCCCTGATTTGTAAAA
* *
63832180 TTACCAAAATACCCGTGGTTTGTAAAA
1 TTACCAAAATACCCCTGATTTGTAAAA
*
63832207 TTACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCCTGATTTGTAAAA
*
63832234 TTATCAAAATACCCCT-AGTTTGTAAAA
1 TTACCAAAATACCCCTGA-TTTGTAAAA
*
63832261 TTACCAAAATACCCCTGATTTGTGAAA
1 TTACCAAAATACCCCTGATTTGTAAAA
** * **
63832288 TTACTGAAATA-CCCTCAAACTGTAAAA
1 TTACCAAAATACCCCT-GATTTGTAAAA
*** *
63832315 TTATTGAAATA-CCCTCGACTTGTAAAA
1 TTACCAAAATACCCCT-GATTTGTAAAA
* *
63832342 TTACCAAAGTACCCTTGATTT
1 TTACCAAAATACCCCTGATTT
63832363 ACAGAATTAC
Statistics
Matches: 154, Mismatches: 25, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
26 4 0.03
27 146 0.95
28 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
TTACCAAAATACCCCTGATTTGTAAAA
Found at i:63832371 original size:81 final size:82
Alignment explanation
Indices: 63832227--63832410 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 82
63832217 ACCCCTGGTT
* * * **
63832227 TGTAAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTA
1 TGTAAAATTATCGAAATACCCTCGAGCTTGTAAAATTACCAAAATACCCCTGATTTCAGAAATTA
63832291 CTGAAATACCCTCAAAC
66 CTGAAATACCCTCAAAC
* * *
63832308 TGTAAAATTATTGAAATACCCTCGA-CTTGTAAAATTACCAAAGTACCCTTGATTTACAG-AATT
1 TGTAAAATTATCGAAATACCCTCGAGCTTGTAAAATTACCAAAATACCCCTGATTT-CAGAAATT
*** * **
63832371 ACTGTTTTACCCTCGATT
65 ACTGAAATACCCTCAAAC
*
63832389 TGCAAAATTATCGAAATACCCT
1 TGTAAAATTATCGAAATACCCT
63832411 TGTAGGGTAG
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
81 82 0.96
82 3 0.04
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (82 bp):
TGTAAAATTATCGAAATACCCTCGAGCTTGTAAAATTACCAAAATACCCCTGATTTCAGAAATTA
CTGAAATACCCTCAAAC
Found at i:63832430 original size:27 final size:27
Alignment explanation
Indices: 63832400--63832503 Score: 88
Period size: 27 Copynumber: 3.9 Consensus size: 27
63832390 GCAAAATTAT
63832400 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* * *
63832427 CGAAATACCCCTGTAGAGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* * * * *
63832454 TGGAATACTCC-TGTAAGGTAGAATTAT
1 CGAAATAC-CCTTGTAGGGTAGAAATAC
* *
63832481 CGAGATA-CCTTGTGGGGTA-AAAT
1 CGAAATACCCTTGTAGGGTAGAAAT
63832504 TACCATTTTG
Statistics
Matches: 61, Mismatches: 14, Indels: 6
0.75 0.17 0.07
Matches are distributed among these distances:
25 5 0.08
26 7 0.11
27 47 0.77
28 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAAATAC
Found at i:63832986 original size:22 final size:22
Alignment explanation
Indices: 63832934--63832998 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
63832924 TTAAAGCATT
*
63832934 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
63832956 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
63832978 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTTTGTGCCAA
63832999 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:63833187 original size:27 final size:27
Alignment explanation
Indices: 63833157--63833258 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
63833147 ATTCTGTTAA
*
63833157 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* *
63833184 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTTTGCCAC-AATATCTGTTTCTG
* *
63833211 GTGGCCTTGCCACAATATCTGTATCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* * **
63833238 GTGACTCTGTAACAATATCTG
1 GTGGCTTTGCCACAATATCTG
63833259 ATAATTGAGC
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
26 7 0.11
27 48 0.79
28 6 0.10
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTGTTTCTG
Found at i:63833443 original size:31 final size:31
Alignment explanation
Indices: 63833403--63833475 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
63833393 ACATTCTAAT
*
63833403 TTTTTATTCTGTTACCTGATACTGATTATGA
1 TTTTGATTCTGTTACCTGATACTGATTATGA
*
63833434 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTATGA
*
63833465 TTCTGATTCTG
1 TTTTGATTCTG
63833476 ATTCTGTCAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTGATTATGA
Found at i:63833458 original size:6 final size:6
Alignment explanation
Indices: 63833418--63833520 Score: 70
Period size: 6 Copynumber: 16.8 Consensus size: 6
63833408 ATTCTGTTAC
* * * *
63833418 CTGATA CTGATT ATGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
63833467 CTGATT CTGATT CTG-TCAC CTAATT CTGATGT -TGATT CTGATT CT-AGTT
1 CTGATT CTGATT CTGAT--T CTGATT CTGAT-T CTGATT CTGATT CTGA-TT
63833516 CTGAT
1 CTGAT
63833521 AATGTTTCTT
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
5 5 0.06
6 63 0.82
7 7 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:63833518 original size:37 final size:37
Alignment explanation
Indices: 63833418--63833511 Score: 118
Period size: 37 Copynumber: 2.5 Consensus size: 37
63833408 ATTCTGTTAC
* * * * *
63833418 CTGATACTGATTATGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATA
*
63833455 CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATA
63833492 CTGATGT-TGATTCTGATTCT
1 CTGAT-TCTGATTCTGATTCT
63833512 AGTTCTGATA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
37 49 0.98
38 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.16, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATA
Found at i:63838089 original size:18 final size:17
Alignment explanation
Indices: 63838063--63838096 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
63838053 CATATTGTAG
63838063 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
63838081 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
63838097 TAGCCCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:63841049 original size:39 final size:39
Alignment explanation
Indices: 63840995--63841086 Score: 166
Period size: 39 Copynumber: 2.4 Consensus size: 39
63840985 AGTTTGAGTC
*
63840995 TTAATTATGTTATAATCTGAACATCTTTAATAAGGGATT
1 TTAATTATGTCATAATCTGAACATCTTTAATAAGGGATT
*
63841034 TTAATTATGTCATAATCTGAACATCTTTAGTAAGGGATT
1 TTAATTATGTCATAATCTGAACATCTTTAATAAGGGATT
63841073 TTAATTATGTCATA
1 TTAATTATGTCATA
63841087 GTCTAGAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 51 1.00
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.43
Consensus pattern (39 bp):
TTAATTATGTCATAATCTGAACATCTTTAATAAGGGATT
Found at i:63856250 original size:40 final size:40
Alignment explanation
Indices: 63856206--63856409 Score: 228
Period size: 40 Copynumber: 5.1 Consensus size: 40
63856196 ATTACCGTTC
* * * *
63856206 ATAGTCGAAGCTATCTCAAATCACACATTAAGTGCCATAT
1 ATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATAT
** * * *
63856246 ATAGTTGAAGCTATCTCGATCTCGTACACTAAGTGTCATAT
1 ATAGCCGAAGCTATCTCGA-ATCGCACACTAAGTGCCATAT
* *
63856287 ATAGCCAAAGCTATGTCGAATCGCACACTAAGTGCCATAT
1 ATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATAT
* * * *
63856327 ATAGCAGAAGCTATGTTGAATCGCACACTAAGTGCCATGT
1 ATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATAT
* * * *
63856367 ATAGCCGAAGCTATGTTGAATAGCACACTAAGTGCCACAT
1 ATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATAT
63856407 ATA
1 ATA
63856410 TCTGATTTGT
Statistics
Matches: 141, Mismatches: 22, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
40 110 0.78
41 31 0.22
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (40 bp):
ATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATAT
Found at i:63864997 original size:27 final size:28
Alignment explanation
Indices: 63864940--63865009 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
63864930 AAACTTGTAC
*
63864940 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
63864968 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
63864995 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63865010 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:63865020 original size:27 final size:27
Alignment explanation
Indices: 63864940--63865021 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
63864930 AAACTTGTAC
* * *
63864940 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
63864968 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
63864995 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
63865022 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:63872925 original size:27 final size:28
Alignment explanation
Indices: 63872868--63872937 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
63872858 AAACTTGTAC
*
63872868 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
63872896 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
63872923 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63872938 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:63872948 original size:27 final size:27
Alignment explanation
Indices: 63872868--63872949 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
63872858 AAACTTGTAC
* * *
63872868 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
63872896 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
63872923 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
63872950 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:63877762 original size:50 final size:52
Alignment explanation
Indices: 63877707--63877822 Score: 155
Period size: 50 Copynumber: 2.3 Consensus size: 52
63877697 ATAAACTCAA
* * * *
63877707 GCATTATGTAACTCTCATGTTAGTT-AAGTTTGCATTA-TAAATTATGACAT
1 GCATTATGTAACTCCCATGTTAGTTAAAGTTTCCATCATTAAATTAAGACAT
* *
63877757 GCATTATGTAACTCCCATGTTAGTTAAAGTTTCCATCATTGAATTAAGTCAT
1 GCATTATGTAACTCCCATGTTAGTTAAAGTTTCCATCATTAAATTAAGACAT
*
63877809 GCATTAAGTAACTC
1 GCATTATGTAACTC
63877823 ATTTGTTCAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 24 0.42
51 10 0.18
52 23 0.40
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (52 bp):
GCATTATGTAACTCCCATGTTAGTTAAAGTTTCCATCATTAAATTAAGACAT
Found at i:63878038 original size:27 final size:25
Alignment explanation
Indices: 63878008--63878057 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 25
63877998 ATTCGTGTGC
63878008 ATGAGTGTTATTAAATATATTGTTTTT
1 ATGAGTGTT-TTAAAT-TATTGTTTTT
*
63878035 ATGAGTGTTTTAAGTTATTGTTT
1 ATGAGTGTTTTAAATTATTGTTT
63878058 AATGCTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 8 0.36
26 5 0.23
27 9 0.41
ACGTcount: A:0.26, C:0.00, G:0.18, T:0.56
Consensus pattern (25 bp):
ATGAGTGTTTTAAATTATTGTTTTT
Found at i:63881128 original size:29 final size:29
Alignment explanation
Indices: 63881096--63881227 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
63881086 ATAGTGAATC
63881096 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
63881125 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
63881155 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
63881184 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
63881213 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63881228 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:63881237 original size:59 final size:59
Alignment explanation
Indices: 63881096--63881227 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
63881086 ATAGTGAATC
63881096 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
63881155 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
63881213 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63881228 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Done.