Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 218 of 378
Found at i:64722279 original size:24 final size:24
Alignment explanation
Indices: 64722247--64722309 Score: 110
Period size: 24 Copynumber: 2.6 Consensus size: 24
64722237 AATCTCAAAT
64722247 GCACTATGTGTGTC-ATTTACTATG
1 GCACTATGTGTG-CGATTTACTATG
64722271 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
64722295 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
64722310 ACATAATAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 1 0.03
24 37 0.97
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:64729403 original size:40 final size:40
Alignment explanation
Indices: 64729352--64729596 Score: 359
Period size: 40 Copynumber: 6.1 Consensus size: 40
64729342 GGATGATAAT
* *
64729352 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
64729391 TTCCGGACTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
64729431 TTCCGGGCTAAGTCTCGAAGGTATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
64729472 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
64729512 TCCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* **
64729552 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
64729592 TCCGG
1 TCCGG
64729597 TTAAAGCCCG
Statistics
Matches: 191, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 190 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:64737254 original size:79 final size:79
Alignment explanation
Indices: 64737126--64737389 Score: 365
Period size: 79 Copynumber: 3.3 Consensus size: 79
64737116 GGATGATAAT
64737126 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
*
64737191 GTGCTAGTGACTA-A
66 GTGCAAGT-ACTATA
* *
64737205 TTCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCCGGCTAAGTCCTGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATT
* *
64737269 TTTGCGAGTTACTATA
65 TGTGCAAG-TACTATA
* * * *
64737285 TCCGGGCTAAGTCCCGAA-GCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCAAAGACATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATT
*
64737348 TGTGCGAACTACTATA
65 TGTGC-AAGTACTATA
64737364 TCCGGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64737390 AGCGAGTGGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
78 2 0.01
79 136 0.82
80 27 0.16
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
GTGCAAGTACTATA
Found at i:64737333 original size:119 final size:119
Alignment explanation
Indices: 64737122--64737408 Score: 377
Period size: 119 Copynumber: 2.4 Consensus size: 119
64737112 ATTCGGATGA
*
64737122 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGG
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCCGAAGG
* * * * *
64737186 CATTTGTGCTAGTGACTAATTCCGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGAC
65 CATTTGTGCGAGTGACTAATTCCGGCTAAGTCCCAAAGACATTTGTGCGAACT-AC
* * * *
64737241 TAATTCCCGGCTAAGTCCTGAAGGCATTTTTGCGAGTTACTATATCCGGGCTAAGTCCCGAA-GC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGC
*
64737305 ATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCAAAGACATTTGTGCGAACTAC
66 ATTTGTGCGAGTGACTAAT-TCC-GGCTAAGTCCCAAAGACATTTGTGCGAACTAC
* *
64737360 T-ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATATCCGG
1 TAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGG
64737409 TTAAAGCCCG
Statistics
Matches: 146, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
117 2 0.01
118 21 0.14
119 120 0.82
120 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (119 bp):
TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGC
ATTTGTGCGAGTGACTAATTCCGGCTAAGTCCCAAAGACATTTGTGCGAACTAC
Found at i:64737403 original size:40 final size:40
Alignment explanation
Indices: 64737126--64737408 Score: 371
Period size: 40 Copynumber: 7.1 Consensus size: 40
64737116 GGATGATAAT
*
64737126 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
64737165 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
64737205 TTCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
* * * *
64737244 TTCCCGGCTAAGTCCTGAAGGCATTTTTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
64737285 TCCGGGCTAAGTCCCGAA-GCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
* * *
64737324 TCCGGGCTAAGTCCCAAAGACATTTGTGCGAACT-ACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTATA
* *
64737364 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
64737404 TCCGG
1 TCCGG
64737409 TTAAAGCCCG
Statistics
Matches: 223, Mismatches: 15, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
39 78 0.35
40 142 0.64
41 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
Found at i:64738593 original size:10 final size:10
Alignment explanation
Indices: 64738578--64738604 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
64738568 TACTCCTTCA
64738578 AGCTCAAATC
1 AGCTCAAATC
64738588 AGCTCAAATC
1 AGCTCAAATC
64738598 AGCTCAA
1 AGCTCAA
64738605 CTTCAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.30, G:0.11, T:0.19
Consensus pattern (10 bp):
AGCTCAAATC
Found at i:64746691 original size:48 final size:48
Alignment explanation
Indices: 64746620--64746950 Score: 608
Period size: 48 Copynumber: 6.9 Consensus size: 48
64746610 CAAGATAAAT
* *
64746620 ATATGTATATGTGGTAAAGCCGAATGGCTAATTTAAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
*
64746668 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
64746716 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
*
64746764 ATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
64746812 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
*
64746860 ATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
*
64746908 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
64746951 GACAGCCCAA
Statistics
Matches: 276, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 276 1.00
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
Found at i:64748731 original size:40 final size:40
Alignment explanation
Indices: 64748629--64748812 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
64748619 AAATTGAATG
* * * * *
64748629 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
64748669 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
64748709 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
64748749 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
64748789 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
64748813 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:64756511 original size:40 final size:40
Alignment explanation
Indices: 64756418--64756599 Score: 172
Period size: 39 Copynumber: 4.6 Consensus size: 40
64756408 AAATTGAATG
* * * * *
64756418 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
64756457 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
64756497 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
64756537 AAAT-CGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
64756576 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
64756600 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
39 63 0.53
40 56 0.47
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:64756555 original size:39 final size:39
Alignment explanation
Indices: 64756459--64756569 Score: 143
Period size: 40 Copynumber: 2.8 Consensus size: 39
64756449 CTGAAATTAT
* * *
64756459 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTAT
1 ATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTAGCTAA
* *
64756499 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAGCTAA
64756539 AT-CGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCAA
64756570 ATCGTGATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
39 29 0.45
40 35 0.55
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.23
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAGCTAA
Found at i:64758171 original size:48 final size:48
Alignment explanation
Indices: 64758043--64758202 Score: 232
Period size: 50 Copynumber: 3.3 Consensus size: 48
64758033 GGGTGTTACA
* *
64758043 AAATATGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
64758091 AAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 -AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* * *
64758141 AAATATGTATGAGATACGTATATGTGGTAAAGCTGAA-GGCTAGTATG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
64758188 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
64758203 GTGTGTATAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
47 23 0.23
48 32 0.31
49 4 0.04
50 43 0.42
ACGTcount: A:0.37, C:0.05, G:0.27, T:0.31
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
Found at i:64758398 original size:37 final size:37
Alignment explanation
Indices: 64758343--64758450 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
64758333 GGAAATATAT
64758343 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
64758380 TCCGGGTAAGACCAGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
64758417 TCCAGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
64758451 TCATCTGAGC
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:64761054 original size:131 final size:131
Alignment explanation
Indices: 64760849--64761122 Score: 413
Period size: 131 Copynumber: 2.1 Consensus size: 131
64760839 CAGGCTAAAG
* *
64760849 CATAGCAGATCTGGCTTTCACGTGTTTACACTGAAGCATATCCAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATCTGGCTTTCACGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTATA
* **
64760914 TTATCAGAGAACAAATCGAAGAAACAAATTTGTCATCTCTGTATTCGACAGAGAGCAGATCGAAG
66 TTATCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAG
64760979 A
131 A
* * * * * *
64760980 CATAGAAGATTTGGCTTTCACGTGTTTACGCTGTAGTAGATCTAAGATGATTTGGCATCTCTATA
1 CATAGCAGATCTGGCTTTCACGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTATA
* * **
64761045 TTGTCAGAGAACAAATTGAAGAAACAAATTTGGCATCTCCATATTCGATTGAGAGCAGATCGAAG
66 TTATCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAG
64761110 A
131 A
64761111 CATAGCAGATCT
1 CATAGCAGATCT
64761123 AACCTTCGGA
Statistics
Matches: 126, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
131 126 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (131 bp):
CATAGCAGATCTGGCTTTCACGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTATA
TTATCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAG
A
Found at i:64761239 original size:44 final size:44
Alignment explanation
Indices: 64761191--64761296 Score: 149
Period size: 44 Copynumber: 2.4 Consensus size: 44
64761181 TACAAGGAGT
* * *
64761191 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGCCAGAGACC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTACCAGAAACC
* *
64761235 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTATCAGAAAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTACCAGAAACC
* *
64761279 AGATCAAAGATAACAGAT
1 AGATCGAAGATAGCAGAT
64761297 CAGGCGTTTC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.25
Consensus pattern (44 bp):
AGATCGAAGATAGCAGATTTGGCATCTCTGTATTACCAGAAACC
Found at i:64762879 original size:12 final size:12
Alignment explanation
Indices: 64762864--64762900 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
64762854 ATTATTTTTA
64762864 TTATTATACATT
1 TTATTATACATT
*
64762876 TTATTTATAAATT
1 TTA-TTATACATT
64762889 TTATTATACATT
1 TTATTATACATT
64762901 ATATATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATACATT
Found at i:64762902 original size:19 final size:19
Alignment explanation
Indices: 64762880--64762921 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
64762870 TACATTTTAT
*
64762880 TTATAAATTTTATTATACA
1 TTATAAATTTTACTATACA
* *
64762899 TTATATATTTTACTATATA
1 TTATAAATTTTACTATACA
64762918 TTAT
1 TTAT
64762922 TCCTTTCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATAAATTTTACTATACA
Found at i:64763078 original size:10 final size:10
Alignment explanation
Indices: 64763063--64763112 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
64763053 ATGATAGTAT
*
64763063 TTATATTTCA
1 TTATATTTTA
64763073 TTATATTTTA
1 TTATATTTTA
*
64763083 TT-TA-TGTA
1 TTATATTTTA
*
64763091 TTTTATTTTA
1 TTATATTTTA
*
64763101 TTATATATTA
1 TTATATTTTA
64763111 TT
1 TT
64763113 CCTTAAAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
8 5 0.15
9 4 0.12
10 24 0.73
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (10 bp):
TTATATTTTA
Found at i:64768790 original size:19 final size:18
Alignment explanation
Indices: 64768747--64768808 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
64768737 CTTACTCTCA
64768747 TTTTCAATTTTATTTTCT
1 TTTTCAATTTTATTTTCT
** *
64768765 TGATCAAGTTTTTTTTTCT
1 TTTTCAA-TTTTATTTTCT
* *
64768784 TTTTCAATCTCAGTTTTCT
1 TTTTCAATTTTA-TTTTCT
64768803 TTTTCA
1 TTTTCA
64768809 CAGTCTCTCT
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
18 7 0.21
19 27 0.79
ACGTcount: A:0.16, C:0.15, G:0.05, T:0.65
Consensus pattern (18 bp):
TTTTCAATTTTATTTTCT
Found at i:64768821 original size:21 final size:20
Alignment explanation
Indices: 64768777--64768826 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
64768767 ATCAAGTTTT
64768777 TTTTTCTTTTTCAATCTCA-
1 TTTTTCTTTTTCAATCTCAC
* *
64768796 GTTTTCTTTTTCACAGTCTCTC
1 TTTTTCTTTTTCA-A-TCTCAC
64768818 TTTTTCTTT
1 TTTTTCTTT
64768827 CTTTTCTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 12 0.48
20 1 0.04
21 4 0.16
22 8 0.32
ACGTcount: A:0.10, C:0.22, G:0.04, T:0.64
Consensus pattern (20 bp):
TTTTTCTTTTTCAATCTCAC
Found at i:64769966 original size:22 final size:21
Alignment explanation
Indices: 64769938--64769986 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
64769928 TATTTTTTCT
** *
64769938 TTTTTTCTTTTTTTTTCATGAA
1 TTTTTTCGATTTTTTTCA-AAA
64769960 TTTTTTCGATTTTTTTCAAAA
1 TTTTTTCGATTTTTTTCAAAA
64769981 TTTTTT
1 TTTTTT
64769987 GCTAAAATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.16, C:0.08, G:0.04, T:0.71
Consensus pattern (21 bp):
TTTTTTCGATTTTTTTCAAAA
Found at i:64772113 original size:27 final size:27
Alignment explanation
Indices: 64772075--64772236 Score: 234
Period size: 27 Copynumber: 6.0 Consensus size: 27
64772065 TACATCACAC
* * *
64772075 AGGGAAAAACAGTCATCTTACCAAATA
1 AGGGCAAAACAGTCATTTTACCACATA
* *
64772102 AGGGTAAAACAGTCATTTTACCACAGA
1 AGGGCAAAACAGTCATTTTACCACATA
* *
64772129 AGGGCAAAAAAGTCATCTTACCACATA
1 AGGGCAAAACAGTCATTTTACCACATA
* *
64772156 AGGGCAAAACAATTATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCACATA
*
64772183 AGGGCAAAACAGTCATTTTACCACTTA
1 AGGGCAAAACAGTCATTTTACCACATA
64772210 AGGGCAAAACAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCACATA
64772237 TATACATCAC
Statistics
Matches: 119, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 119 1.00
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.22
Consensus pattern (27 bp):
AGGGCAAAACAGTCATTTTACCACATA
Found at i:64772151 original size:54 final size:54
Alignment explanation
Indices: 64772075--64772950 Score: 542
Period size: 54 Copynumber: 16.6 Consensus size: 54
64772065 TACATCACAC
* * *
64772075 AGGG-AAAAACAGTCATCTTACCAAATAAGGGTAAAACAGTCATTTTACCACAGA
1 AGGGCAAAAA-AGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* *
64772129 AGGGCAAAAAAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
1 AGGGCAAAAAAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * *
64772183 AGGGCAAAACAGTCATTTTACCACTTAAGGGCAAAACAGTCATTTTACCACATATATACATCA
1 AGGGCAAAAAAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTA-C-C------ACAT-A
* * * * * *
64772246 CATAGGAAAAAATAGTCATCTTACCATATAAGGGTAAAACAGTCATTTTACCATAAA
1 -A-GGGCAAAAA-AGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * *
64772303 AGGGCAAAACAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
1 AGGGCAAAAAAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * * *
64772357 AGGGCAAAACAA-TCATTTTACCACTTTAGGGCAAAATAGTCATTTTACCACAT-
1 AGGGCAAAA-AAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * * * * * * *
64772410 A----TATATA-T-A-C--ATCACAT-AGGGAAAAACAGTCATCTTATCATATA
1 AGGGCAAAAAAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * * * * *
64772454 AGGGTAAAACAGTCATTTTACCACAGAAGGGCAAAACAGTCATCTTACCACAAA
1 AGGGCAAAAAAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * * * * *
64772508 AGGGCAAAACAA-TTATTTTACCACATAAGGGCAAATCAATCATTTTACCACTTT
1 AGGGCAAAA-AAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * * * * *
64772562 AGGGCAAAATAGTTATTTTACCACAT-A----TATATA-TACA---T--CACAT-
1 AGGGCAAAAAAGTCATCTTACCACATAAGGGCAAAACAGT-CATTTTACCACATA
* * * *
64772605 AGGG-AAAAACAGTAATCTTACCATATAAGGGTAAAACAGTCATTTTACCACAAA
1 AGGGCAAAAA-AGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * *
64772659 AGGGCAAAACAA-TCATCTTACCACATAAGGGCAAAACAATTATCTTACCACATA
1 AGGGCAAAA-AAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * * * *
64772713 AGGGCAAAACAA-TCATTTTACCACTTTAGGGCAAAATAGTTATTTTACCACAT-
1 AGGGCAAAA-AAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * * * * * *
64772766 A----TATATA-T-A-C--ATCACAT-AGGGAAAAACAGTCATCTTACCATATA
1 AGGGCAAAAAAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * * * * *
64772810 AGGGTAAAACAGTCATTTTACCACAGAAGGGCAAAATAGTCATCTTACCACATA
1 AGGGCAAAAAAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * * *
64772864 AGGGCAAAACAA-TTATTTTACCACATAAGGGCAAAACAATCATTTTACCACTTA
1 AGGGCAAAA-AAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
* * * * *
64772918 AAGGC--AACAGTCATTTTACCATATAAGGCCAAA
1 AGGGCAAAAAAGTCATCTTACCACATAAGGGCAAA
64772951 GTAGTCTTTT
Statistics
Matches: 640, Mismatches: 126, Indels: 114
0.73 0.14 0.13
Matches are distributed among these distances:
42 4 0.01
43 59 0.09
44 17 0.03
46 1 0.00
47 2 0.00
48 16 0.03
49 11 0.02
50 2 0.00
51 2 0.00
52 22 0.03
53 18 0.03
54 413 0.65
55 20 0.03
56 3 0.00
57 1 0.00
58 2 0.00
62 4 0.01
63 1 0.00
64 2 0.00
65 7 0.01
66 33 0.05
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (54 bp):
AGGGCAAAAAAGTCATCTTACCACATAAGGGCAAAACAGTCATTTTACCACATA
Found at i:64772284 original size:27 final size:27
Alignment explanation
Indices: 64772254--64772406 Score: 182
Period size: 27 Copynumber: 5.7 Consensus size: 27
64772244 CACATAGGAA
* * *
64772254 AAAATAGTCATCTTACCATATAAGGGT
1 AAAACAGTCATTTTACCATATAAGGGC
*
64772281 AAAACAGTCATTTTACCATAAAAGGGC
1 AAAACAGTCATTTTACCATATAAGGGC
* *
64772308 AAAACAGTCATCTTACCACATAAGGGC
1 AAAACAGTCATTTTACCATATAAGGGC
* * *
64772335 AAAACAATTATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCATATAAGGGC
* *
64772362 AAAACAATCATTTTACCACT-TTAGGGC
1 AAAACAGTCATTTTACCA-TATAAGGGC
*
64772389 AAAATAGTCATTTTACCA
1 AAAACAGTCATTTTACCA
64772407 CATATATATA
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (27 bp):
AAAACAGTCATTTTACCATATAAGGGC
Found at i:64772352 original size:120 final size:119
Alignment explanation
Indices: 64772134--64772356 Score: 347
Period size: 120 Copynumber: 1.9 Consensus size: 119
64772124 ACAGAAGGGC
* *
64772134 AAAAAAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATAAGGGCAAAACAGTCAT
1 AAAAAAGTCATCTTACCACATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCAT
* * *
64772199 TTTACCACTTAAGGGCAAAACAGTCATTTTACCACATATATACATCACATAGGA
66 CTTACCACATAAGGGCAAAACAATCATTTTACCACATATATACATCACATAGGA
* * * *
64772253 AAAAATAGTCATCTTACCATATAAGGGTAAAACAGTCATTTTACCATAAAAGGGCAAAACAGTCA
1 AAAAA-AGTCATCTTACCACATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCA
*
64772318 TCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
65 TCTTACCACATAAGGGCAAAACAATCATTTTACCACATA
64772357 AGGGCAAAAC
Statistics
Matches: 93, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
119 5 0.05
120 88 0.95
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (119 bp):
AAAAAAGTCATCTTACCACATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTCAT
CTTACCACATAAGGGCAAAACAATCATTTTACCACATATATACATCACATAGGA
Found at i:64772379 original size:147 final size:147
Alignment explanation
Indices: 64772107--64772380 Score: 404
Period size: 147 Copynumber: 1.9 Consensus size: 147
64772097 AAATAAGGGT
* * *
64772107 AAAACAGTCATTTTACCACAGAAGGGCAAAAAAGTCATCTTACCACATAAGGGCAAAACAATTAT
1 AAAACAGTCATCTTACCACAGAAGGGCAAAAAAGTCATCTTACCACAAAAGGGCAAAACAATCAT
* * * *
64772172 TTTACCACATAAGGGCAAAACAGTCATTTTACCACTTAAGGGCAAAACAGTCATTTTACCACATA
66 CTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGGGCAAAACAATCATTTTACCACATA
64772237 TATACATCACATAGGAA
131 TATACATCACATAGGAA
* * * * * * * *
64772254 AAAATAGTCATCTTACCATATAAGGGTAAAACAGTCATTTTACCATAAAAGGGCAAAACAGTCAT
1 AAAACAGTCATCTTACCACAGAAGGGCAAAAAAGTCATCTTACCACAAAAGGGCAAAACAATCAT
*
64772319 CTTACCACATAAGGGCAAAACAATTATTTTACCACATAAGGGCAAAACAATCATTTTACCAC
66 CTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGGGCAAAACAATCATTTTACCAC
64772381 TTTAGGGCAA
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
147 111 1.00
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.24
Consensus pattern (147 bp):
AAAACAGTCATCTTACCACAGAAGGGCAAAAAAGTCATCTTACCACAAAAGGGCAAAACAATCAT
CTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGGGCAAAACAATCATTTTACCACATA
TATACATCACATAGGAA
Found at i:64772457 original size:27 final size:27
Alignment explanation
Indices: 64772427--64772938 Score: 159
Period size: 27 Copynumber: 19.9 Consensus size: 27
64772417 TACATCACAT
* * * *
64772427 AGGGAAAAACAGTCATCTTATCATATA
1 AGGGCAAAACAGTCATCTTACCACAAA
* * *
64772454 AGGGTAAAACAGTCATTTTACCACAGA
1 AGGGCAAAACAGTCATCTTACCACAAA
64772481 AGGGCAAAACAGTCATCTTACCACAAA
1 AGGGCAAAACAGTCATCTTACCACAAA
* * * *
64772508 AGGGCAAAACAATTATTTTACCACATA
1 AGGGCAAAACAGTCATCTTACCACAAA
* * * ***
64772535 AGGGCAAATCAATCATTTTACCACTTT
1 AGGGCAAAACAGTCATCTTACCACAAA
* * * *
64772562 AGGGCAAAATAGTTATTTTACCACATAT
1 AGGGCAAAACAGTCATCTTACCACA-AA
* * * **
64772590 A---TATATACA-TCA-CATAGGGA-AAA
1 AGGGCA-AAACAGTCATCTTA-CCACAAA
* * *
64772613 A---C-----AGTAATCTTACCATATA
1 AGGGCAAAACAGTCATCTTACCACAAA
* *
64772632 AGGGTAAAACAGTCATTTTACCACAAA
1 AGGGCAAAACAGTCATCTTACCACAAA
* *
64772659 AGGGCAAAACAATCATCTTACCACATA
1 AGGGCAAAACAGTCATCTTACCACAAA
* * *
64772686 AGGGCAAAACAATTATCTTACCACATA
1 AGGGCAAAACAGTCATCTTACCACAAA
* * ***
64772713 AGGGCAAAACAATCATTTTACCACTTT
1 AGGGCAAAACAGTCATCTTACCACAAA
* * * *
64772740 AGGGCAAAATAGTTATTTTACCACATAT
1 AGGGCAAAACAGTCATCTTACCACA-AA
* * * **
64772768 A---TATATACA-TCA-CATAGGGA-AAA
1 AGGGCA-AAACAGTCATCTTA-CCACAAA
* *
64772791 A---C-----AGTCATCTTACCATATA
1 AGGGCAAAACAGTCATCTTACCACAAA
* * *
64772810 AGGGTAAAACAGTCATTTTACCACAGA
1 AGGGCAAAACAGTCATCTTACCACAAA
* *
64772837 AGGGCAAAATAGTCATCTTACCACATA
1 AGGGCAAAACAGTCATCTTACCACAAA
* * * *
64772864 AGGGCAAAACAATTATTTTACCACATA
1 AGGGCAAAACAGTCATCTTACCACAAA
* * *
64772891 AGGGCAAAACAATCATTTTACCACTTAA
1 AGGGCAAAACAGTCATCTTACCAC-AAA
*
64772919 A-GGC--AACAGTCATTTTACCA
1 AGGGCAAAACAGTCATCTTACCA
64772939 TATAAGGCCA
Statistics
Matches: 370, Mismatches: 86, Indels: 60
0.72 0.17 0.12
Matches are distributed among these distances:
17 2 0.01
18 7 0.02
19 12 0.03
23 4 0.01
24 6 0.02
25 23 0.06
26 6 0.02
27 304 0.82
28 6 0.02
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (27 bp):
AGGGCAAAACAGTCATCTTACCACAAA
Found at i:64772522 original size:178 final size:178
Alignment explanation
Indices: 64772053--64772938 Score: 1523
Period size: 178 Copynumber: 5.0 Consensus size: 178
64772043 ATCATACATG
* *
64772053 CACATATATATATACATCACACAGGGAAAAACAGTCATCTTACCAAATAAGGGTAAAACAGTCAT
1 CACATATATATATACATCACATAGGGAAAAACAGTCATCTTACCATATAAGGGTAAAACAGTCAT
*
64772118 TTTACCACAGAAGGGCAAAAAAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
66 TTTACCACAGAAGGGCAAAACAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
* * *
64772183 AGGGCAAAACAGTCATTTTACCACTTAAGGGCAAAACAGTCATTTTAC
131 AGGGCAAAACAATCATTTTACCACTTTAGGGCAAAATAGTCATTTTAC
* *
64772231 CAC----ATATATACATCACATAGGAAAAAATAGTCATCTTACCATATAAGGGTAAAACAGTCAT
1 CACATATATATATACATCACATAGGGAAAAACAGTCATCTTACCATATAAGGGTAAAACAGTCAT
* *
64772292 TTTACCATAAAAGGGCAAAACAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
66 TTTACCACAGAAGGGCAAAACAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
64772357 AGGGCAAAACAATCATTTTACCACTTTAGGGCAAAATAGTCATTTTAC
131 AGGGCAAAACAATCATTTTACCACTTTAGGGCAAAATAGTCATTTTAC
*
64772405 CACATATATATATACATCACATAGGGAAAAACAGTCATCTTATCATATAAGGGTAAAACAGTCAT
1 CACATATATATATACATCACATAGGGAAAAACAGTCATCTTACCATATAAGGGTAAAACAGTCAT
*
64772470 TTTACCACAGAAGGGCAAAACAGTCATCTTACCACAAAAGGGCAAAACAATTATTTTACCACATA
66 TTTACCACAGAAGGGCAAAACAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
* *
64772535 AGGGCAAATCAATCATTTTACCACTTTAGGGCAAAATAGTTATTTTAC
131 AGGGCAAAACAATCATTTTACCACTTTAGGGCAAAATAGTCATTTTAC
*
64772583 CACATATATATATACATCACATAGGGAAAAACAGTAATCTTACCATATAAGGGTAAAACAGTCAT
1 CACATATATATATACATCACATAGGGAAAAACAGTCATCTTACCATATAAGGGTAAAACAGTCAT
* * *
64772648 TTTACCACAAAAGGGCAAAACAATCATCTTACCACATAAGGGCAAAACAATTATCTTACCACATA
66 TTTACCACAGAAGGGCAAAACAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
*
64772713 AGGGCAAAACAATCATTTTACCACTTTAGGGCAAAATAGTTATTTTAC
131 AGGGCAAAACAATCATTTTACCACTTTAGGGCAAAATAGTCATTTTAC
64772761 CACATATATATATACATCACATAGGGAAAAACAGTCATCTTACCATATAAGGGTAAAACAGTCAT
1 CACATATATATATACATCACATAGGGAAAAACAGTCATCTTACCATATAAGGGTAAAACAGTCAT
*
64772826 TTTACCACAGAAGGGCAAAATAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
66 TTTACCACAGAAGGGCAAAACAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
* * *
64772891 AGGGCAAAACAATCATTTTACCACTTAAAGGC--AACAGTCATTTTAC
131 AGGGCAAAACAATCATTTTACCACTTTAGGGCAAAATAGTCATTTTAC
64772937 CA
1 CA
64772939 TATAAGGCCA
Statistics
Matches: 670, Mismatches: 34, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
174 164 0.24
176 14 0.02
178 492 0.73
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (178 bp):
CACATATATATATACATCACATAGGGAAAAACAGTCATCTTACCATATAAGGGTAAAACAGTCAT
TTTACCACAGAAGGGCAAAACAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
AGGGCAAAACAATCATTTTACCACTTTAGGGCAAAATAGTCATTTTAC
Found at i:64772528 original size:124 final size:124
Alignment explanation
Indices: 64772303--64772534 Score: 329
Period size: 124 Copynumber: 1.9 Consensus size: 124
64772293 TTACCATAAA
* * *
64772303 AGGGCAAAACAGTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATAAGGGCAAAACA
1 AGGGAAAAACAGTCATCTTACCACATAAGGGCAAAACAATCATTTTACCACAGAAGGGCAAAACA
* *** * *
64772368 ATCATTTTACCACTTTAGGGCAAAATAGTCATTTTACCACATATATATATACATCACAT
66 ATCATCTTACCACAAAAGGGCAAAACAATCATTTTACCACATATATATATACATCACAT
* * * *
64772427 AGGGAAAAACAGTCATCTTATCATATAAGGGTAAAACAGTCATTTTACCACAGAAGGGCAAAACA
1 AGGGAAAAACAGTCATCTTACCACATAAGGGCAAAACAATCATTTTACCACAGAAGGGCAAAACA
* *
64772492 GTCATCTTACCACAAAAGGGCAAAACAATTATTTTACCACATA
66 ATCATCTTACCACAAAAGGGCAAAACAATCATTTTACCACATA
64772535 AGGGCAAATC
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
124 93 1.00
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (124 bp):
AGGGAAAAACAGTCATCTTACCACATAAGGGCAAAACAATCATTTTACCACAGAAGGGCAAAACA
ATCATCTTACCACAAAAGGGCAAAACAATCATTTTACCACATATATATATACATCACAT
Found at i:64772614 original size:124 final size:124
Alignment explanation
Indices: 64772481--64772712 Score: 329
Period size: 124 Copynumber: 1.9 Consensus size: 124
64772471 TTACCACAGA
* * * * *
64772481 AGGGCAAAACAGTCATCTTACCACAAAAGGGCAAAACAATTATTTTACCACATAAGGGCAAATCA
1 AGGGAAAAACAGTAATCTTACCACAAAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACA
* * * * * *
64772546 ATCATTTTACCACTTTAGGGCAAAATAGTTATTTTACCACATATATATATACATCACAT
66 ATCATCTTACCACATAAGGGCAAAACAATTATCTTACCACATATATATATACATCACAT
* * * *
64772605 AGGGAAAAACAGTAATCTTACCATATAAGGGTAAAACAGTCATTTTACCACAAAAGGGCAAAACA
1 AGGGAAAAACAGTAATCTTACCACAAAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACA
64772670 ATCATCTTACCACATAAGGGCAAAACAATTATCTTACCACATA
66 ATCATCTTACCACATAAGGGCAAAACAATTATCTTACCACATA
64772713 AGGGCAAAAC
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
124 93 1.00
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (124 bp):
AGGGAAAAACAGTAATCTTACCACAAAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACA
ATCATCTTACCACATAAGGGCAAAACAATTATCTTACCACATATATATATACATCACAT
Found at i:64772614 original size:151 final size:151
Alignment explanation
Indices: 64772454--64772890 Score: 416
Period size: 151 Copynumber: 2.9 Consensus size: 151
64772444 TTATCATATA
* * *
64772454 AGGGTAAAACAGTCATTTTACCACAGAAGGGCAAAACAGTCATCTTACCACAAAAGGGCAAAACA
1 AGGGAAAAACAGTAATCTTACCACAGAAGGGCAAAACAGTCATCTTACCACAAAAGGGCAAAACA
* * * * * * * * *
64772519 ATTATTTTACCACATAAGGGCAAATCAATCATTTTACCACTTTAGGGCAAAATAGTTATTTTACC
66 ATCATCTTACCACATAAGGGCAAAACAATCATCTTACCACATAAGGGCAAAACAATCATTTTACC
64772584 ACATATATATATACATCACAT
131 ACATATATATATACATCACAT
* * * *
64772605 AGGGAAAAACAGTAATCTTACCATATAAGGGTAAAACAGTCATTTTACCACAAAAGGGCAAAACA
1 AGGGAAAAACAGTAATCTTACCACAGAAGGGCAAAACAGTCATCTTACCACAAAAGGGCAAAACA
*
64772670 ATCATCTTACCACATAAGGGCAAAACAATTATCTTACCACATAAGGGCAAAACAATCATTTTACC
66 ATCATCTTACCACATAAGGGCAAAACAATCATCTTACCACATAAGGGCAAAACAATCATTTTACC
* *** * **
64772735 AC-TTTAGGGCA-AAAT-AGTT
131 ACATATA-TATATACATCACAT
**** ** * * * * * *
64772754 ATTTTACCACA-TATATATATACATCACA-TAGGGAAAAACAGTCATCTTACCATATAAGGGTAA
1 AGGGAAAAACAGTA-ATCT-TAC--CACAGAAGGGCAAAACAGTCATCTTACCACAAAAGGGCAA
* * * * * *
64772817 AACAGTCATTTTACCACAGAAGGGCAAAATAGTCATCTTACCACATAAGGGCAAAACAATTATTT
62 AACAATCATCTTACCACATAAGGGCAAAACAATCATCTTACCACATAAGGGCAAAACAATCATTT
64772882 TACCACATA
127 TACCACATA
64772891 AGGGCAAAAC
Statistics
Matches: 234, Mismatches: 46, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
148 2 0.01
149 10 0.04
150 9 0.04
151 209 0.89
152 4 0.02
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (151 bp):
AGGGAAAAACAGTAATCTTACCACAGAAGGGCAAAACAGTCATCTTACCACAAAAGGGCAAAACA
ATCATCTTACCACATAAGGGCAAAACAATCATCTTACCACATAAGGGCAAAACAATCATTTTACC
ACATATATATATACATCACAT
Found at i:64772858 original size:97 final size:98
Alignment explanation
Indices: 64772680--64772863 Score: 262
Period size: 97 Copynumber: 1.9 Consensus size: 98
64772670 ATCATCTTAC
* * ***
64772680 CACATAAGGGCAAAACAATTATCTTACCACATAAGGGCAAAACAATCATTTTACCACTTTAGGGC
1 CACATAAGGGAAAAACAATCATCTTACCACATAAGGGCAAAACAATCATTTTACCACAGAAGGGC
* *
64772745 AAAATAGTTATTTTACCACATATATATATACAT
66 AAAATAGTCATCTTACCACATATATATATACAT
* * * *
64772778 CACAT-AGGGAAAAACAGTCATCTTACCATATAAGGGTAAAACAGTCATTTTACCACAGAAGGGC
1 CACATAAGGGAAAAACAATCATCTTACCACATAAGGGCAAAACAATCATTTTACCACAGAAGGGC
64772842 AAAATAGTCATCTTACCACATA
66 AAAATAGTCATCTTACCACATA
64772864 AGGGCAAAAC
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
97 70 0.93
98 5 0.07
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (98 bp):
CACATAAGGGAAAAACAATCATCTTACCACATAAGGGCAAAACAATCATTTTACCACAGAAGGGC
AAAATAGTCATCTTACCACATATATATATACAT
Found at i:64772884 original size:124 final size:124
Alignment explanation
Indices: 64772659--64772890 Score: 329
Period size: 124 Copynumber: 1.9 Consensus size: 124
64772649 TTACCACAAA
* * *
64772659 AGGGCAAAACAATCATCTTACCACATAAGGGCAAAACAATTATCTTACCACATAAGGGCAAAACA
1 AGGGAAAAACAATCATCTTACCACATAAGGGCAAAACAATCATCTTACCACAGAAGGGCAAAACA
* * * * *
64772724 ATCATTTTACCACTTTAGGGCAAAATAGTTATTTTACCACATATATATATACATCACAT
66 ATCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATATATATATACATCACAT
* * * * * *
64772783 AGGGAAAAACAGTCATCTTACCATATAAGGGTAAAACAGTCATTTTACCACAGAAGGGCAAAATA
1 AGGGAAAAACAATCATCTTACCACATAAGGGCAAAACAATCATCTTACCACAGAAGGGCAAAACA
*
64772848 GTCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
66 ATCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATA
64772891 AGGGCAAAAC
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
124 93 1.00
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.25
Consensus pattern (124 bp):
AGGGAAAAACAATCATCTTACCACATAAGGGCAAAACAATCATCTTACCACAGAAGGGCAAAACA
ATCATCTTACCACATAAGGGCAAAACAATTATTTTACCACATATATATATACATCACAT
Found at i:64782174 original size:50 final size:50
Alignment explanation
Indices: 64782060--64782189 Score: 176
Period size: 50 Copynumber: 2.6 Consensus size: 50
64782050 CCGGTACGCA
* **
64782060 TAGTAGCCTGCACTTAGTACTATACA--TGCAACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTG-AACCAACAGTCTAATACACG
* *
64782109 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGAAC-CAACAGTCTAATACACG
64782159 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
64782190 TCACAGTTTT
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
49 25 0.34
50 42 0.58
51 6 0.08
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGAACCAACAGTCTAATACACG
Found at i:64788191 original size:14 final size:14
Alignment explanation
Indices: 64788172--64788199 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
64788162 ATATTTATTT
64788172 TATGAAATTATTCA
1 TATGAAATTATTCA
64788186 TATGAAATTATTCA
1 TATGAAATTATTCA
64788200 AAGAAGACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
TATGAAATTATTCA
Found at i:64788402 original size:55 final size:54
Alignment explanation
Indices: 64788300--64788546 Score: 224
Period size: 48 Copynumber: 4.7 Consensus size: 54
64788290 GGGTTTAAGG
* * *
64788300 ACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAT
1 ACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAAGTTTTATAAGGCAAGGAT
* * * * *
64788355 ATCATGTAATACCATGTCAAGACATGACATTGATAAGTTTTTATAAGGCAAAGG-T
1 ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG-TTTTATAAGGC-AAGGAT
* * * * *
64788410 CCCATGTAA-ACCATGCCAAGGCATGGCATTGGTGAG-TTCAGAAGGCAAGGAT
1 ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTATAAGGCAAGGAT
* * *
64788462 ACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG--TT-TCA---AAGGAT
1 ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTATAAGGCAAGGAT
* * * *
64788510 ACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
64788547 GTACCCGTGT
Statistics
Matches: 160, Mismatches: 28, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
48 40 0.25
51 5 0.03
52 18 0.11
53 23 0.14
54 30 0.19
55 40 0.25
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTATAAGGCAAGGAT
Found at i:64788499 original size:107 final size:110
Alignment explanation
Indices: 64788301--64788501 Score: 302
Period size: 107 Copynumber: 1.9 Consensus size: 110
64788291 GGTTTAAGGA
* * *
64788301 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAATA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCGAAGGCAAGGATACCATGTAAGA
*
64788366 CCATGTCAAGACATGACATTGATAAGTTTTTATAAGGCAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTTTTATAAGGCAAAGGTC
*
64788411 CCATGTAA-ACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCAGAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-GAAGGCAAGGATACCATGTAAG
* *
64788472 ACCATGTCAAGACATGGCAATGGTAAGTTT
65 ACCATGTCAAGACATGACAATGATAAGTTT
64788502 CAAAGGATAC
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
106 3 0.04
107 47 0.57
108 7 0.08
109 18 0.22
110 8 0.10
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCGAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGACAATGATAAGTTTTTATAAGGCAAAGGTC
Found at i:64795879 original size:29 final size:29
Alignment explanation
Indices: 64795844--64795917 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
64795834 GTTGTGAGAT
* *
64795844 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
64795873 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
64795902 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64795918 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:64803940 original size:29 final size:29
Alignment explanation
Indices: 64803905--64803978 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
64803895 GTTGTGAGAT
* *
64803905 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
64803934 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
64803963 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64803979 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:64810039 original size:30 final size:30
Alignment explanation
Indices: 64809968--64810050 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
64809958 CTTTTGTTTC
* *
64809968 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
64809999 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
64810028 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
64810051 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:64810050 original size:18 final size:18
Alignment explanation
Indices: 64810001--64810056 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
64809991 CACTCTCAAA
* *
64810001 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
64810018 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
64810036 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
64810055 TT
1 TT
64810057 CAAAGACTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:64810057 original size:12 final size:12
Alignment explanation
Indices: 64810026--64810050 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64810016 TTTTTCAATC
64810026 TCATTTTCTTTT
1 TCATTTTCTTTT
64810038 TCATTTTCTTTT
1 TCATTTTCTTTT
64810050 T
1 T
64810051 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:64810068 original size:12 final size:12
Alignment explanation
Indices: 64810053--64810083 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
64810043 TTCTTTTTGC
64810053 TTTTCAAAGACT
1 TTTTCAAAGACT
*
64810065 TTTTCAAAGGCT
1 TTTTCAAAGACT
64810077 TTTTCAA
1 TTTTCAA
64810084 GTTCTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGACT
Found at i:64810157 original size:21 final size:21
Alignment explanation
Indices: 64810131--64810194 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
64810121 CTCTTGCCTC
64810131 TCTTTTCTTTTTATTTCGTTT
1 TCTTTTCTTTTTATTTCGTTT
* * *
64810152 TCTTTTTCTTCTT-TTGCTTTT
1 TC-TTTTCTTTTTATTTCGTTT
64810173 TCTTTTC-TTTTATTT-GTTT
1 TCTTTTCTTTTTATTTCGTTT
64810192 TCT
1 TCT
64810195 CTTTACAAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
19 9 0.26
20 7 0.20
21 10 0.29
22 9 0.26
ACGTcount: A:0.03, C:0.16, G:0.05, T:0.77
Consensus pattern (21 bp):
TCTTTTCTTTTTATTTCGTTT
Found at i:64810171 original size:15 final size:14
Alignment explanation
Indices: 64810131--64810176 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
64810121 CTCTTGCCTC
*
64810131 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
64810146 TCGTTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
64810161 TCTTTTGCTTTTTCT
1 TCTTTT-CTTTTTCT
64810176 T
1 T
64810177 TTCTTTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 4 0.14
15 14 0.50
16 10 0.36
ACGTcount: A:0.02, C:0.17, G:0.04, T:0.76
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:64810197 original size:21 final size:21
Alignment explanation
Indices: 64810129--64810198 Score: 83
Period size: 20 Copynumber: 3.3 Consensus size: 21
64810119 GCCTCTTGCC
64810129 TCTCTTTTCTTTTTATTTCGTTT
1 TCTCTTTTC-TTTTATTT-GTTT
*
64810152 TCT-TTTTCTTCT-TTTGCTTT
1 TCTCTTTTCTTTTATTTG-TTT
64810172 T-TCTTTTCTTTTATTTGTTT
1 TCTCTTTTCTTTTATTTGTTT
64810192 TCTCTTT
1 TCTCTTT
64810199 ACAAGAATGT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
19 2 0.05
20 19 0.46
21 12 0.29
22 5 0.12
23 3 0.07
ACGTcount: A:0.03, C:0.17, G:0.04, T:0.76
Consensus pattern (21 bp):
TCTCTTTTCTTTTATTTGTTT
Found at i:64811128 original size:13 final size:13
Alignment explanation
Indices: 64811110--64811168 Score: 59
Period size: 13 Copynumber: 4.6 Consensus size: 13
64811100 ACTCTTTTCC
64811110 TTTTTTTTTTGAT
1 TTTTTTTTTTGAT
* *
64811123 TTTTTTATTTCGAA
1 TTTTTT-TTTTGAT
*
64811137 TTTTTTTTTGGA-
1 TTTTTTTTTTGAT
*
64811149 -ATTTTTTTTGAT
1 TTTTTTTTTTGAT
64811161 TTTTTTTT
1 TTTTTTTT
64811169 AACTTGTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
11 9 0.24
13 17 0.46
14 11 0.30
ACGTcount: A:0.12, C:0.02, G:0.08, T:0.78
Consensus pattern (13 bp):
TTTTTTTTTTGAT
Found at i:64811168 original size:14 final size:14
Alignment explanation
Indices: 64811110--64811157 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
64811100 ACTCTTTTCC
64811110 TTTTTTTTTT-G-A
1 TTTTTTTTTTCGAA
64811122 TTTTTTTATTTCGAA
1 TTTTTTT-TTTCGAA
*
64811137 -TTTTTTTTTGGAA
1 TTTTTTTTTTCGAA
64811150 TTTTTTTT
1 TTTTTTTT
64811158 GATTTTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
12 7 0.23
13 9 0.29
14 14 0.45
15 1 0.03
ACGTcount: A:0.12, C:0.02, G:0.08, T:0.77
Consensus pattern (14 bp):
TTTTTTTTTTCGAA
Found at i:64812844 original size:30 final size:30
Alignment explanation
Indices: 64812810--64812894 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 30
64812800 TAAACTAAAA
* * *
64812810 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCATGAGCTAAAGC
* * * * *
64812840 TGAGCTGAGATTAAACTCCTAAGCTAAAGC
1 TGAGCTAAGATTTAGCTCATGAGCTAAAGC
*
64812870 TGAGCTAAGGTTTAGCTCATGAGCT
1 TGAGCTAAGATTTAGCTCATGAGCT
64812895 GGATATGAGC
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCATGAGCTAAAGC
Found at i:64814126 original size:3 final size:3
Alignment explanation
Indices: 64814118--64814158 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
64814108 CCCAAAAATA
64814118 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
64814159 ATAAACTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:64814433 original size:32 final size:32
Alignment explanation
Indices: 64814397--64814461 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
64814387 CCTTTTCATA
64814397 TTTCATATTACATAACACTGGGCCGAAGCCTT
1 TTTCATATTACATAACACTGGGCCGAAGCCTT
* **
64814429 TTTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTTCATATTACATAACACTGGGCCGAAGCCTT
64814461 T
1 T
64814462 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (32 bp):
TTTCATATTACATAACACTGGGCCGAAGCCTT
Found at i:64814698 original size:25 final size:25
Alignment explanation
Indices: 64814656--64814729 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 25
64814646 GTTTTATCAT
*
64814656 ATAACTGGAGGCCT-AGCCTCTTTT-A
1 ATAACTGG-GGCATAAGCC-CTTTTCA
*
64814681 ATAACTGGGGCATAAGCCCTTTTCG
1 ATAACTGGGGCATAAGCCCTTTTCA
*
64814706 GTAAACTGGGGCATAAGCCCTTTT
1 AT-AACTGGGGCATAAGCCCTTTT
64814730 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
24 9 0.21
25 13 0.30
26 21 0.49
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (25 bp):
ATAACTGGGGCATAAGCCCTTTTCA
Found at i:64817003 original size:49 final size:48
Alignment explanation
Indices: 64816928--64817106 Score: 180
Period size: 51 Copynumber: 3.6 Consensus size: 48
64816918 ATCTGATACC
* * *
64816928 CATAGTAGCCTGCACTTAGTATTACACATGCGATCAACAATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGATCAACAAT-TGGTACA
* **
64816977 CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC-ATTGAGTATG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGATC-AA--CAATTG-GTACA
* * * *
64817028 CATAGTAGCCTGCACTTAGTACTACACATGTGACTTAATAGTATGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGA-TCAACAAT-TGGTACA
* *
64817078 CGTAGTAGCCTACACTTAGTACTACACAT
1 CATAGTAGCCTGCACTTAGTACTACACAT
64817107 ATGTATCCAC
Statistics
Matches: 108, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
49 32 0.30
50 33 0.31
51 41 0.38
52 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.27
Consensus pattern (48 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGATCAACAATTGGTACA
Found at i:64824535 original size:101 final size:100
Alignment explanation
Indices: 64824354--64824535 Score: 265
Period size: 101 Copynumber: 1.8 Consensus size: 100
64824344 ATCTGATACC
* * * * *
64824354 CATAATAGCCTGCACTTAGTATTACACATGCGATCAACAATCCGGTACACATAGTAGCTTGCACT
1 CATAATAGCCTGCACTTAGTACTACACATGCGATCAACAATACGATACACATAGTAGCCTACACT
64824419 TAGTACTACACACGTGATCGAAGTCATTGAGTATG
66 TAGTACTACACACGTGATCGAAGTCATTGAGTATG
* * * * *
64824454 CATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGATACACGTAGTAGCCTACAC
1 CATAATAGCCTGCACTTAGTACTACACATGCGA-TCAACAATACGATACACATAGTAGCCTACAC
64824519 TTAGTACTACACACGTG
65 TTAGTACTACACACGTG
64824536 TATTCATAAT
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
100 31 0.44
101 40 0.56
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (100 bp):
CATAATAGCCTGCACTTAGTACTACACATGCGATCAACAATACGATACACATAGTAGCCTACACT
TAGTACTACACACGTGATCGAAGTCATTGAGTATG
Found at i:64828870 original size:28 final size:28
Alignment explanation
Indices: 64828827--64828892 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
64828817 TATTTTATTT
*
64828827 TAATACATGTCTTTAATTTGTCATAGT-
1 TAATACATGTCATTAATTTGTCATAGTC
*
64828854 TCAATACATGTCATTAATTTGTCCTAGTC
1 T-AATACATGTCATTAATTTGTCATAGTC
64828883 TAATACATGT
1 TAATACATGT
64828893 TTTAATATGC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
27 1 0.03
28 33 0.94
29 1 0.03
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (28 bp):
TAATACATGTCATTAATTTGTCATAGTC
Found at i:64831612 original size:20 final size:21
Alignment explanation
Indices: 64831569--64831614 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
64831559 ACTGTTTTGT
64831569 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
64831589 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
64831608 TATGGGC
1 TATGGGC
64831615 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:64831683 original size:60 final size:60
Alignment explanation
Indices: 64831607--64831743 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 60
64831597 AACTGTGTTA
* * * * *
64831607 ATATGGGCAAGGCCCAATATA-TCTCGA-CTTGTAATAGGGCTATGGCCCGGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GATATTATAA-AGGGCTATGGCCCAGATTAATACTG
* *
64831667 ATATGGGCTAGGCCCAATATACTCTGATATTATAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATATTATAAAGGGCTATGGCCCAGATTAATACTG
64831727 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
64831744 GTTAACTCTA
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
60 52 0.78
61 15 0.22
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATACTCTGATATTATAAAGGGCTATGGCCCAGATTAATACTG
Found at i:64831734 original size:28 final size:28
Alignment explanation
Indices: 64831643--64831748 Score: 76
Period size: 28 Copynumber: 3.7 Consensus size: 28
64831633 ACTTGTAATA
* * *
64831643 GGGCTATGGCCCGGATTGATACTGATAT
1 GGGCTATGGCCCAGATTAATATTGATAT
*
64831671 GGGCTA-GGCCCA-ATATACTCTGATATT-ATAAG
1 GGGCTATGGCCCAGAT-TA-----ATATTGAT-AT
64831703 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTATGGCCCAGATTAATATTGATAT
*
64831731 GGGCTAAGGCCCAG-TTAA
1 GGGCTATGGCCCAGATTAA
64831749 CTCTAATTTC
Statistics
Matches: 62, Mismatches: 6, Indels: 21
0.70 0.07 0.24
Matches are distributed among these distances:
26 2 0.03
27 10 0.16
28 25 0.40
29 2 0.03
31 2 0.03
32 11 0.18
33 8 0.13
34 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (28 bp):
GGGCTATGGCCCAGATTAATATTGATAT
Found at i:64834288 original size:44 final size:44
Alignment explanation
Indices: 64834224--64834314 Score: 164
Period size: 44 Copynumber: 2.1 Consensus size: 44
64834214 TTATATATTG
64834224 TTGATGATTTTAGTACGAGCTTACTAAGCTTTTGAAAACTTACT
1 TTGATGATTTTAGTACGAGCTTACTAAGCTTTTGAAAACTTACT
* *
64834268 TTGATGATTTTAGTATGAGCTTACTAAGCTTTTGAAAGCTTACT
1 TTGATGATTTTAGTACGAGCTTACTAAGCTTTTGAAAACTTACT
64834312 TTG
1 TTG
64834315 TGTGTATGTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (44 bp):
TTGATGATTTTAGTACGAGCTTACTAAGCTTTTGAAAACTTACT
Found at i:64836178 original size:35 final size:35
Alignment explanation
Indices: 64836066--64836195 Score: 143
Period size: 35 Copynumber: 3.7 Consensus size: 35
64836056 ACCTATAAGA
* *
64836066 CCGAATAAACAAGGTTCAATATATCATCACATATGG
1 CCGAATATACAA-ATTCAATATATCATCACATATGG
* * * * **
64836102 CTGATTATACAAAATTCAATATATCCTCACGTATAA
1 CCGAATATAC-AAATTCAATATATCATCACATATGG
* * *
64836138 TCGAATATACAAATTCAATATTTCATCACTTATGG
1 CCGAATATACAAATTCAATATATCATCACATATGG
64836173 CCGAATATACAAATTCAATATAT
1 CCGAATATACAAATTCAATATAT
64836196 GACATATGAC
Statistics
Matches: 75, Mismatches: 18, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
35 41 0.55
36 32 0.43
37 2 0.03
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (35 bp):
CCGAATATACAAATTCAATATATCATCACATATGG
Found at i:64838130 original size:24 final size:25
Alignment explanation
Indices: 64838103--64838153 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
64838093 GCCTAGCCTC
*
64838103 TTTTAATAA-CTGGGGCAAAGCCCT
1 TTTTAATAATCGGGGGCAAAGCCCT
**
64838127 TTTTGGTAATCGGGGGCAAAGCCCT
1 TTTTAATAATCGGGGGCAAAGCCCT
64838152 TT
1 TT
64838154 CCGCACTTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (25 bp):
TTTTAATAATCGGGGGCAAAGCCCT
Found at i:64838498 original size:81 final size:81
Alignment explanation
Indices: 64838413--64838758 Score: 451
Period size: 81 Copynumber: 4.3 Consensus size: 81
64838403 GGGTATTTCA
* *
64838413 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
64838478 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * *** * *
64838494 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGAGTACTTTGGTAATTTTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
* * ** *
64838559 AACCAAGGGT-ATTTCA
66 AATCGAGGGTAAAAT-G
* * * *
64838575 GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTCTAAATCGAGGGTAAAAGGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
* *
64838640 AATTGACGGTAAAATG
66 AATCGAGGGTAAAATG
* *
64838656 GTAATTCTATGAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
* *
64838721 AATCGAGGGTGAAACG
66 AATCGAGGGTAAAATG
64838737 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
64838759 CTTTGGTAAT
Statistics
Matches: 218, Mismatches: 45, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
80 2 0.01
81 214 0.98
82 2 0.01
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:64838769 original size:27 final size:27
Alignment explanation
Indices: 64838413--64838758 Score: 388
Period size: 27 Copynumber: 12.8 Consensus size: 27
64838403 GGGTATTTCA
* * *
64838413 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
64838440 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
64838467 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* **
64838494 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
* * ***
64838521 GTAATTCTGTAAATCGAGAGTACTTTG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * * ** *
64838548 GTAATTTTGTAAACCAAGGGT-ATTTCA
1 GTAATTCTATAAATCGAGGGTAAAAT-G
* * *
64838575 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
64838602 ATAATTCTCTAAATCGAGGGTAAAAGG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
64838629 GTAATTCTATAAATTGACGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
64838656 GTAATTCTATGAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
64838683 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
64838710 GTAATTCTATAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
64838737 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
64838759 CTTTGGTAAT
Statistics
Matches: 272, Mismatches: 45, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 3 0.01
27 268 0.99
28 1 0.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:64840385 original size:27 final size:27
Alignment explanation
Indices: 64840353--64840453 Score: 123
Period size: 27 Copynumber: 3.7 Consensus size: 27
64840343 TTACTAAATG
* *
64840353 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
64840380 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
64840407 CCCAT-GATTTACAAAATTACCGTTTTA
1 CCC-TCGATTTATAGAATTACCGTTTTA
* *
64840434 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTATAGAATTAC
64840454 TGAAATACCC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 1 0.02
27 64 0.97
28 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.37
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:64840462 original size:27 final size:27
Alignment explanation
Indices: 64840378--64840463 Score: 68
Period size: 27 Copynumber: 3.2 Consensus size: 27
64840368 ATTACCATTT
* * **
64840378 TACCCTCGATTTATAGAATTACCG-TT
1 TACCCTCGATTTACAAAATTACCGAAA
***
64840404 TCACCCAT-GATTTACAAAATTACCGTTT
1 T-ACCC-TCGATTTACAAAATTACCGAAA
*
64840432 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACCGAAA
64840459 TACCC
1 TACCC
64840464 CTGTAGGGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
26 2 0.04
27 44 0.88
28 4 0.08
ACGTcount: A:0.33, C:0.26, G:0.08, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGAAA
Found at i:64840478 original size:27 final size:27
Alignment explanation
Indices: 64840448--64841631 Score: 1620
Period size: 27 Copynumber: 44.3 Consensus size: 27
64840438 CGATTTACAA
*
64840448 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64840475 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64840502 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64840529 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64840556 AATTACTGTAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64840583 AATTACCGGAATA-CTC-GTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64840608 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
64840635 AATTACCGGAATACTCTTGTATGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64840662 AATTACCGAAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64840688 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64840715 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64840742 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64840769 AATTACC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
64840796 AATTA-CGGAATACCCCAGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64840822 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64840849 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
64840876 AATTACCGGAATACCCCCATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64840903 AATTACCGAAATAACCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
64840930 AATTACCGGTATACCCC-GTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64840956 AATTACCGAAATACCTCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
64840983 AATTACCGAAATACCCCTACAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
64841010 AATTATCGGAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64841037 AATTACCGAAATACCCTTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64841064 AATTATCGGAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64841090 AATTACCGAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64841117 AATTATCG-AATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64841143 AATTACCGAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64841170 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64841197 AATTACCGAAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64841223 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
64841250 AATTACCGAAATACCCTTACAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64841277 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64841304 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
64841331 AATTATCGCAATACCCCCGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64841358 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64841385 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64841412 AATTACCGAAA-ACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64841438 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64841465 AATTACCGGAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64841492 AATTATCGCAAA-ACCCCTGTAGGGTAG
1 AATTACCG-AAATACCCCTGTAGGGTAG
64841519 AATTACCGAAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64841545 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
64841572 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
64841599 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
64841625 AATTACC
1 AATTACC
64841632 ATTTTGCCCC
Statistics
Matches: 1029, Mismatches: 114, Indels: 29
0.88 0.10 0.02
Matches are distributed among these distances:
25 22 0.02
26 211 0.21
27 794 0.77
28 2 0.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:64840754 original size:107 final size:108
Alignment explanation
Indices: 64840448--64841603 Score: 1650
Period size: 107 Copynumber: 10.8 Consensus size: 108
64840438 CGATTTACAA
* * *
64840448 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
*
64840513 TACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
* * * * *
64840556 AATTACTGTAATACCCCTGTAGGGTAGAATTACCGGAATA-CTC-GTAGGGTAGAATTACCGGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
* * * * *
64840619 TACCCCTGTAGGGTAGAATTACCGGAATACTCTTGTATGATAG
66 TACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
* *
64840662 AATTACCGAAATA-CCCTGTAGGGTAGAATTACCGGAATACCCTTGTAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
*
64840726 TACCCTTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
* *
64840769 AATTACC-AGAATACCCCTGTAGGGTAGAATTA-CGGAATACCCCAGTAGGGTAGAATTACCGAA
1 AATTACCGA-AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
* *
64840832 ATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
* ** * **
64840876 AATTACCGGAATACCCCCATAGGGTAGAATTACCGAAATAACCCTGTAGGGTAGAATTACCGGTA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
* * * * *
64840941 TACCCC-GTATGGTAGAATTACCGAAATACCTCTGCAGGGTAG
66 TACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
** * * *
64840983 AATTACCGAAATACCCCTACAGGGTAGAATTATCGGAATACCCCTGCAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
* *
64841048 TACCCTTGCAGGGTAGAATTATCGGAATA-CCCTGTAGGGTAG
66 TACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
* * *
64841090 AATTACCGAAATACCCCTGCAGGGTAGAATTATCG-AATACCCCTGCAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
*
64841154 TACCCCTGCAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
* *
64841197 AATTACCGAAATA-CCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
* ** **
64841261 TACCCTTACAGGGTAGAATTATCAAAATACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
* * * *
64841304 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCCGTAGGGTAGAATTACCGGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
* *
64841369 TACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAG
66 TACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
* *
64841412 AATTACCGAAA-ACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACCGGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
* * *
64841476 TACTCCTGTAGGGTAGAATTATCGCAAAACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
**
64841519 AATTACCGAAATA-CCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
*
64841583 TACCCCTGTAGGGTGGAATTA
66 TACCCCTGTAGGGTAGAATTA
64841604 CCGAGATACC
Statistics
Matches: 954, Mismatches: 83, Indels: 23
0.90 0.08 0.02
Matches are distributed among these distances:
105 26 0.03
106 149 0.16
107 575 0.60
108 204 0.21
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.24
Consensus pattern (108 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAG
Found at i:64842110 original size:22 final size:22
Alignment explanation
Indices: 64842058--64842122 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
64842048 TTAAATTCTT
*
64842058 CTGATTATGGCTT-TGTGTCAAC
1 CTGATTATGG-TTGTGTGCCAAC
*
64842080 CT-ACATATGGTTGTGTGCCAAC
1 CTGA-TTATGGTTGTGTGCCAAC
*
64842102 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGTTGTGTGCCAA
64842123 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 3 0.08
22 32 0.89
23 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (22 bp):
CTGATTATGGTTGTGTGCCAAC
Found at i:64842311 original size:27 final size:27
Alignment explanation
Indices: 64842296--64842382 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
64842286 TTTGCCGTAT
64842296 TATCTGTTTCTGGTGGCTATGCCACAAA
1 TATCTG-TTCTGGTGGCTATGCCACAAA
* *
64842324 TATCTGTTCTGGTGGCTCTACCAC-AA
1 TATCTGTTCTGGTGGCTATGCCACAAA
* * *
64842350 TATCTGTATCTGGTGACTTTGTCAC-AA
1 TATCTGT-TCTGGTGGCTATGCCACAAA
64842377 TATCTG
1 TATCTG
64842383 ATAACTGAGC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 9 0.17
27 37 0.71
28 6 0.12
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.38
Consensus pattern (27 bp):
TATCTGTTCTGGTGGCTATGCCACAAA
Found at i:64842551 original size:31 final size:31
Alignment explanation
Indices: 64842516--64842612 Score: 140
Period size: 31 Copynumber: 3.1 Consensus size: 31
64842506 GGATTACATT
* * *
64842516 TTCTGTTACCTTATACTGGTTCTGATTTTGA
1 TTCTGTTACCTAATACTGATTCTGATTCTGA
*
64842547 TTCTGTTACCTGATACTGATTCTGATTCTGA
1 TTCTGTTACCTAATACTGATTCTGATTCTGA
* *
64842578 TTCTGTCACCTAATTCTGATTCTGATTCTGA
1 TTCTGTTACCTAATACTGATTCTGATTCTGA
64842609 TTCT
1 TTCT
64842613 AGTTCTGATA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (31 bp):
TTCTGTTACCTAATACTGATTCTGATTCTGA
Found at i:64842565 original size:6 final size:6
Alignment explanation
Indices: 64842535--64842621 Score: 72
Period size: 6 Copynumber: 14.2 Consensus size: 6
64842525 CTTATACTGG
* *
64842535 TTCTGA TTTTGA TTCTG- TTACCTGA TACTGA TTCTGA TTCTGA TTCTG-
1 TTCTGA TTCTGA TTCTGA TT--CTGA TTCTGA TTCTGA TTCTGA TTCTGA
* *
64842583 TCACCTAA TTCTGA TTCTGA TTCTGA TTCT-A GTTCTGA T
1 T--TCTGA TTCTGA TTCTGA TTCTGA TTCTGA -TTCTGA T
64842622 AATGTTTCTT
Statistics
Matches: 65, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
TTCTGA
Found at i:64844613 original size:27 final size:27
Alignment explanation
Indices: 64844583--64844685 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
64844573 TTACTGAAAC
* *
64844583 ACCCTCGATTTGTAGAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCGTTTT
* *
64844610 ACCCTCGATTATATAGAATTACTGTTTC
1 ACCCTCGATT-TATAGAATTACCGTTTT
* * *
64844638 ACCCTCGATTTACAAAATTACCGTTCT
1 ACCCTCGATTTATAGAATTACCGTTTT
* *
64844665 ACCCTCGATTTAAAAAATTAC
1 ACCCTCGATTTATAGAATTAC
64844686 TGAAATACCC
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 42 0.65
28 23 0.35
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (27 bp):
ACCCTCGATTTATAGAATTACCGTTTT
Found at i:64844657 original size:55 final size:54
Alignment explanation
Indices: 64844582--64844687 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 54
64844572 ATTACTGAAA
** * * * *
64844582 CACCCTCGATTTGTAGAATTACCATTTTACCCTCGATTATATAGAATTACTGTTT
1 CACCCTCGATTTACAAAATTACCATTCTACCCTCGATT-TAAAAAATTACTGTTT
*
64844637 CACCCTCGATTTACAAAATTACCGTTCTACCCTCGATTTAAAAAATTACTG
1 CACCCTCGATTTACAAAATTACCATTCTACCCTCGATTTAAAAAATTACTG
64844688 AAATACCCTG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
54 11 0.25
55 33 0.75
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (54 bp):
CACCCTCGATTTACAAAATTACCATTCTACCCTCGATTTAAAAAATTACTGTTT
Found at i:64844694 original size:27 final size:27
Alignment explanation
Indices: 64844638--64844696 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
64844628 TTACTGTTTC
* ***
64844638 ACCCTCGATTTACAAAATTACCGTTCT
1 ACCCTCGATTTAAAAAATTACCGAAAT
*
64844665 ACCCTCGATTTAAAAAATTACTGAAAT
1 ACCCTCGATTTAAAAAATTACCGAAAT
64844692 ACCCT
1 ACCCT
64844697 GTAGGGTAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.31
Consensus pattern (27 bp):
ACCCTCGATTTAAAAAATTACCGAAAT
Found at i:64844734 original size:27 final size:27
Alignment explanation
Indices: 64844680--64845778 Score: 1447
Period size: 27 Copynumber: 40.6 Consensus size: 27
64844670 CGATTTAAAA
*
64844680 AATTACTGAAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64844706 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
64844733 AATTACCGAAATACCTTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64844760 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64844787 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64844814 AATTACCG-AATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64844840 AATTACCG-AATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64844866 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64844893 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64844920 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64844947 AATTACC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
64844974 AATTACCAAAATGCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64845001 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64845028 AATTAAC-AGAATACCTCTGTAGGGTA-
1 AATTACCGA-AATACCCCTGTAGGGTAG
**
64845054 ATACCCCTGTAGGGTAGAATTACCAGAATACCCCTGTA-GGTAG
1 A-A----T-TACCG-A-AA-TA-C-------CCCTGTAGGGTAG
* *
64845097 AACTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845124 AATTACCG-AATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64845150 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845177 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64845204 AATTACCGGAATACCCCCGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845231 AATTACCGAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845258 AATTACCGGAATACCCCTGTA-GGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845284 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845311 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64845338 AATTACCGGAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64845365 AATTACCGATATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
64845392 AATTATCGCAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64845419 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845446 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845473 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64845500 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845527 AATTACCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64845554 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845581 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64845608 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845635 AATTATCGAAATACCCC--TAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845660 AATTACCG-AATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845686 AATTATCGCAAA-ACCCCTGTA-GGTAG
1 AATTACCG-AAATACCCCTGTAGGGTAG
64845712 AATTACC-AAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
64845738 AATTACTAAAATA-CCCAGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64845764 AATTACCGAGATACC
1 AATTACCGAAATACC
64845779 TTGCGGGGTA
Statistics
Matches: 958, Mismatches: 81, Indels: 67
0.87 0.07 0.06
Matches are distributed among these distances:
24 10 0.01
25 24 0.03
26 182 0.19
27 709 0.74
28 3 0.00
31 1 0.00
32 2 0.00
33 1 0.00
34 6 0.01
35 4 0.00
36 1 0.00
37 3 0.00
42 5 0.01
43 7 0.01
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:64845058 original size:16 final size:16
Alignment explanation
Indices: 64845037--64845069 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
64845027 GAATTAACAG
*
64845037 AATACCTCTGTAGGGT
1 AATACCCCTGTAGGGT
64845053 AATACCCCTGTAGGGT
1 AATACCCCTGTAGGGT
64845069 A
1 A
64845070 GAATTACCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (16 bp):
AATACCCCTGTAGGGT
Found at i:64845071 original size:43 final size:43
Alignment explanation
Indices: 64845010--64845093 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
64845000 GAATTACCGA
*
64845010 AATACCCCTGTAGGGTAGAATTAACAGAATACCTCTGTAGGGT
1 AATACCCCTGTAGGGTAGAATTAACAGAATACCCCTGTAGGGT
*
64845053 AATACCCCTGTAGGGTAGAATTACCAGAATACCCCTGTAGG
1 AATACCCCTGTAGGGTAGAATTAACAGAATACCCCTGTAGG
64845094 TAGAACTACC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (43 bp):
AATACCCCTGTAGGGTAGAATTAACAGAATACCCCTGTAGGGT
Found at i:64846265 original size:22 final size:22
Alignment explanation
Indices: 64846226--64846286 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
64846216 AAGCCTTCTG
* *
64846226 ATTAT-GCTTTGTGTCAACCTA
1 ATTATGGCTGTGTGCCAACCTA
64846247 CA-TATGGCTGTGTGCCAACCTA
1 -ATTATGGCTGTGTGCCAACCTA
64846269 ATTATGGCTGTGTGCCAA
1 ATTATGGCTGTGTGCCAA
64846287 ACATATTTGC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 4 0.11
22 31 0.89
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (22 bp):
ATTATGGCTGTGTGCCAACCTA
Found at i:64846475 original size:27 final size:27
Alignment explanation
Indices: 64846445--64846546 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
64846435 ATTCTGTTAA
* *
64846445 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
64846472 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
64846499 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
64846526 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
64846547 ATAACTAAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:64846729 original size:31 final size:31
Alignment explanation
Indices: 64846683--64846797 Score: 142
Period size: 31 Copynumber: 3.7 Consensus size: 31
64846673 TTGCATTCAC
64846683 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
64846715 GTTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * **
64846746 ATTCTGATTCTGATTCTGTCACCTAATTTTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
64846777 ATTCTGA-TCTGATTCTAGTTA
1 ATTCTGATTTTGATTCT-GTTA
64846798 TGATAATGTT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
30 9 0.12
31 59 0.80
32 6 0.08
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:64846746 original size:6 final size:6
Alignment explanation
Indices: 64846683--64846763 Score: 58
Period size: 6 Copynumber: 13.0 Consensus size: 6
64846673 TTGCATTCAC
* * * *
64846683 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG GTTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
64846733 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
64846764 TCACCTAATT
Statistics
Matches: 58, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.07
6 41 0.71
7 11 0.19
8 2 0.03
ACGTcount: A:0.17, C:0.16, G:0.17, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:64848792 original size:27 final size:27
Alignment explanation
Indices: 64848762--64848862 Score: 139
Period size: 27 Copynumber: 3.7 Consensus size: 27
64848752 TACTGAAATG
* *
64848762 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
64848789 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
64848816 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
64848843 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTATAGAATTAC
64848863 TGAAATACCC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.37
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:64848871 original size:27 final size:27
Alignment explanation
Indices: 64848742--64848872 Score: 86
Period size: 27 Copynumber: 4.9 Consensus size: 27
64848732 AATACTTTAG
* * *
64848742 TTTACCAAATTACTGAAATGCCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
** * **
64848769 TTTGTAGAATTACC-ATTTTACCCTCGA
1 TTTACAAAATTACCGA-AATACCCTCGA
* * **
64848796 TTTATAGAATTACCG-TTTCACCCTCGA
1 TTTACAAAATTACCGAAAT-ACCCTCGA
***
64848823 TTTACAAAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
*
64848850 TTTACAAAATTACTGAAATACCC
1 TTTACAAAATTACCGAAATACCC
64848873 CTGTAGGGTA
Statistics
Matches: 85, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
26 4 0.05
27 78 0.92
28 3 0.04
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACCGAAATACCCTCGA
Found at i:64848887 original size:27 final size:27
Alignment explanation
Indices: 64848857--64849372 Score: 748
Period size: 27 Copynumber: 19.2 Consensus size: 27
64848847 CGATTTACAA
* *
64848857 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
64848884 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
64848911 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
64848938 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* * * *
64848965 AATTACTGGAATACCCTTATAAGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
64848992 AATTACC-GAATA-CCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
64849017 AATTACCGGAATAGCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
64849044 AATTACCAGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
64849071 AATTACCGGAATAGCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
64849098 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
64849125 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
64849152 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
64849179 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
64849206 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
64849233 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
64849260 AATTACCGGAATACCCCTGTAAGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
64849287 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* * * *
64849314 AATTACCGAAATGCCTCTATAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*** * *
64849341 AATTACTAAAATACCCCTGTATGGTGG
1 AATTACCGGAATACCCCTGTAGGGTAG
64849368 AATTA
1 AATTA
64849373 TCGAGATACC
Statistics
Matches: 449, Mismatches: 38, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
25 17 0.04
26 10 0.02
27 422 0.94
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (27 bp):
AATTACCGGAATACCCCTGTAGGGTAG
Found at i:64849879 original size:22 final size:22
Alignment explanation
Indices: 64849827--64849882 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
64849817 TTAAATCCTT
* *
64849827 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
64849849 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
64849871 TTGATTATGGCT
1 CTGATTATGGCT
64849883 GTATGCAAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
21 1 0.04
22 25 0.93
23 1 0.04
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:64850129 original size:27 final size:26
Alignment explanation
Indices: 64850049--64850150 Score: 96
Period size: 27 Copynumber: 3.8 Consensus size: 26
64850039 ATTCTGTTAA
* * *
64850049 GTGGCTTTGCCACATTATTTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
* **
64850076 GTGGCTATGCCACAAATATCAATTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
64850103 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* **
64850130 GTGACTCTGTTACAATATCTG
1 GTGGCTCTGCCACAATATCTG
64850151 ATAACTGAGC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.82
28 4 0.06
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:64850333 original size:31 final size:31
Alignment explanation
Indices: 64850287--64850397 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
64850277 TTGCATTCAC
*
64850287 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTAATACTG
*
64850319 GTTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* * * *
64850350 ATTCTGATTTTGATTCTATCACCTAATTCTA
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
*
64850381 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
64850398 AGTTCTGATA
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 65 0.92
32 6 0.08
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTAATACTG
Found at i:64850358 original size:6 final size:6
Alignment explanation
Indices: 64850287--64850406 Score: 50
Period size: 6 Copynumber: 19.3 Consensus size: 6
64850277 TTGCATTCAC
* * * *
64850287 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG GTTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
64850337 -TTACCTA ATACTG ATTCTG ATTTTG ATTCT- ATCACCTA ATTCTA ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
64850387 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
64850407 AATGTTTCTT
Statistics
Matches: 85, Mismatches: 17, Indels: 24
0.67 0.13 0.19
Matches are distributed among these distances:
5 7 0.08
6 61 0.72
7 13 0.15
8 4 0.05
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:64856650 original size:38 final size:38
Alignment explanation
Indices: 64856607--64856750 Score: 209
Period size: 38 Copynumber: 3.7 Consensus size: 38
64856597 TGTATATCCA
64856607 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTG
*
64856645 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTG
*
64856683 GGTTAAATCCCGCAGGCTTAGTGCTGGTATTATAT-TCG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCT-G
* * *
64856721 AGCTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 -GGTTAAA-TCCCGCAGGCTTCGTGCTGGT
64856751 GACTGAATTC
Statistics
Matches: 97, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
38 72 0.74
39 6 0.06
40 19 0.20
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33
Consensus pattern (38 bp):
GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTG
Found at i:64860487 original size:18 final size:17
Alignment explanation
Indices: 64860464--64860525 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
64860454 AAGAGAAGAA
64860464 AAAAAGAAATTGAAAAAG
1 AAAAAGAAA-TGAAAAAG
**
64860482 AAAAAGAAACCAAAAAG
1 AAAAAGAAATGAAAAAG
*
64860499 GAAAAGAGAATGAACAAAAG
1 AAAAAGA-AATG-A-AAAAG
64860519 AAAAAGA
1 AAAAAGA
64860526 GATTGAGATA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 12 0.34
18 11 0.31
19 1 0.03
20 11 0.31
ACGTcount: A:0.73, C:0.05, G:0.18, T:0.05
Consensus pattern (17 bp):
AAAAAGAAATGAAAAAG
Found at i:64860589 original size:21 final size:21
Alignment explanation
Indices: 64860551--64860590 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
64860541 GAAAGTATGC
* * *
64860551 AAGAAATGAGTGTTGTTGAAA
1 AAGAAACGAGAGTCGTTGAAA
64860572 AAGAAACGAGAGTCGTTGA
1 AAGAAACGAGAGTCGTTGA
64860591 GTTTTCAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.05, G:0.30, T:0.23
Consensus pattern (21 bp):
AAGAAACGAGAGTCGTTGAAA
Found at i:64864563 original size:27 final size:27
Alignment explanation
Indices: 64864524--64864601 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
64864514 CTCATATCTG
* *
64864524 TAGGCTAGTATTACTGAAATACCCCTA
1 TAGGGTAGAATTACTGAAATACCCCTA
* * *
64864551 TAGGGTAGAATTACTAAAATGCCCCTG
1 TAGGGTAGAATTACTGAAATACCCCTA
64864578 TAGGGTAGAATTACTGAAATACCC
1 TAGGGTAGAATTACTGAAATACCC
64864602 TTGGTTTACA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATACCCCTA
Found at i:64864624 original size:26 final size:27
Alignment explanation
Indices: 64864586--64864932 Score: 136
Period size: 27 Copynumber: 12.9 Consensus size: 27
64864576 TGTAGGGTAG
64864586 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGGTTTACAA
*
64864613 AGTTACTG-AATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGGTTTACAA
** * *
64864639 AATTACCAAAATACCC-TCGATTAGCAA
1 AATTACTGAAATACCCTTGGTTTA-CAA
* * **
64864666 AATTA-TCAAAATATCCC-TAGTTTGTAA
1 AATTACT-GAAATA-CCCTTGGTTTACAA
* ** **
64864693 AATTACT-AGAATACCCCTAATTTGTAA
1 AATTACTGA-AATACCCTTGGTTTACAA
* *** **
64864720 AATTACTAAAATACCCTTGACCTGTAA
1 AATTACTGAAATACCCTTGGTTTACAA
* * *** *
64864747 AACTACCGAAATACCCTCAATTTATAA
1 AATTACTGAAATACCCTTGGTTTACAA
** **** *
64864774 AATTACAAAAATACCCCAAATTTAGAA
1 AATTACTGAAATACCCTTGGTTTACAA
* **
64864801 AATTA-TCGAAATACCCTTGATTTGGAA
1 AATTACT-GAAATACCCTTGGTTTACAA
* **
64864828 AATTACAGAAATA-CCTCTAATTTACAA
1 AATTACTGAAATACCCT-TGGTTTACAA
* **
64864855 AATTACAGAAATACCCTTAACTTTTA-AA
1 AATTACTGAAATACCCTT--GGTTTACAA
* * *
64864883 AATTACAGAAATACCATTGGTTTGCAA
1 AATTACTGAAATACCCTTGGTTTACAA
*
64864910 AATTA-TCGAAACACCCTTGGTTT
1 AATTACT-GAAATACCCTTGGTTT
64864933 GCAGATTTAC
Statistics
Matches: 255, Mismatches: 49, Indels: 32
0.76 0.15 0.10
Matches are distributed among these distances:
26 38 0.15
27 182 0.71
28 31 0.12
29 4 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGGTTTACAA
Found at i:64864731 original size:81 final size:79
Alignment explanation
Indices: 64864637--64864926 Score: 248
Period size: 81 Copynumber: 3.6 Consensus size: 79
64864627 CTTGGTTTAC
* * * * *
64864637 AAAATTACCAAAATACCCTCGATTAGCAAAATTATCAAAATATCCCTAGTTTGTAAAATTACTAG
1 AAAATTACTAAAATACCCTTGATTTGCAAAATTATCAAAATA-CCCTAATTTATAAAATTAC-AG
64864702 AATACCCCTAATTTGT
64 AATACCCCTAATTTGT
** * * * * *
64864718 AAAATTACTAAAATACCCTTGACCTGTAAAACTACCGAAATACCCTCAATTTATAAAATTACAAA
1 AAAATTACTAAAATACCCTTGATTTGCAAAATTATCAAAATACCCT-AATTTATAAAATTAC-AG
*
64864783 AATACCCCAAATTTAG-
64 AATACCCCTAATTT-GT
* * *
64864799 AAAATTA-TCGAAATACCCTTGATTTGGAAAATTA-CAGAAATACCTCTAATTTACAAAATTACA
1 AAAATTACT-AAAATACCCTTGATTTGCAAAATTATCA-AAATACC-CTAATTTATAAAATTACA
*
64864862 GAAATACCCTTAACTTT-T
63 G-AATACCCCTAA-TTTGT
* * * *
64864880 AAAAATTAC-AGAAATACCATTGGTTTGCAAAATTATCGAAACACCCT
1 -AAAATTACTA-AAATACCCTTGATTTGCAAAATTATCAAAATACCCT
64864927 TGGTTTGCAG
Statistics
Matches: 167, Mismatches: 30, Indels: 24
0.76 0.14 0.11
Matches are distributed among these distances:
80 7 0.04
81 119 0.71
82 40 0.24
83 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (79 bp):
AAAATTACTAAAATACCCTTGATTTGCAAAATTATCAAAATACCCTAATTTATAAAATTACAGAA
TACCCCTAATTTGT
Found at i:64864911 original size:55 final size:54
Alignment explanation
Indices: 64864753--64864927 Score: 185
Period size: 54 Copynumber: 3.2 Consensus size: 54
64864743 GTAAAACTAC
* * * * *
64864753 CGAAATACCCTCAATTT-ATAAAATTACAAAAATACCCCAAATTTAGAAAATTAT
1 CGAAATACCCTTAATTTGA-AAAATTACAGAAATACCTCTAATTTACAAAATTAT
* *
64864807 CGAAATACCCTTGATTTGGAAAATTACAGAAATACCTCTAATTTACAAAATTA-
1 CGAAATACCCTTAATTTGAAAAATTACAGAAATACCTCTAATTTACAAAATTAT
* ** *
64864860 CAGAAATACCCTTAACTTTTAAAAATTACAGAAATACCAT-TGGTTTGCAAAATTAT
1 C-GAAATACCCTTAA-TTTGAAAAATTACAGAAATACC-TCTAATTTACAAAATTAT
*
64864916 CGAAACACCCTT
1 CGAAATACCCTT
64864928 GGTTTGCAGA
Statistics
Matches: 102, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
53 1 0.01
54 57 0.56
55 42 0.41
56 2 0.02
ACGTcount: A:0.45, C:0.19, G:0.07, T:0.29
Consensus pattern (54 bp):
CGAAATACCCTTAATTTGAAAAATTACAGAAATACCTCTAATTTACAAAATTAT
Found at i:64865218 original size:19 final size:19
Alignment explanation
Indices: 64865194--64865238 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
64865184 AAGGAAGAAA
64865194 TTGACGATCGCATGGTTGC
1 TTGACGATCGCATGGTTGC
64865213 TTGACGATCGCATGGTTGC
1 TTGACGATCGCATGGTTGC
64865232 TTGACGA
1 TTGACGA
64865239 CCATGGATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (19 bp):
TTGACGATCGCATGGTTGC
Found at i:64866621 original size:30 final size:30
Alignment explanation
Indices: 64866536--64866632 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
64866526 TAAACTAAAA
* *
64866536 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * *
64866566 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* *
64866596 TGAGCTAAGGTTTAGCTTGTGAGCTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
64866625 ATGAGCTA
1 -TGAGCTA
64866633 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:64869809 original size:68 final size:67
Alignment explanation
Indices: 64869737--64869913 Score: 173
Period size: 67 Copynumber: 2.6 Consensus size: 67
64869727 CATCATGTGT
* * * *
64869737 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
64869799 ATGTAG
62 ATGTAG
** * *
64869805 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
64869870 AG
66 AG
* * * * *
64869872 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGAGTGG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGG
64869914 TACTGAGTGT
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 20 0.22
65 7 0.08
66 21 0.23
67 32 0.34
68 13 0.14
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:64869842 original size:64 final size:64
Alignment explanation
Indices: 64869761--64869944 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
64869751 AGACATTATG
* * *
64869761 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
64869825 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGAGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
64869890 AA
63 AA
* * * *
64869892 AT-TGGCTAGGTCACATGAGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGAGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
64869945 CGAACTACAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 7 0.07
66 18 0.18
67 32 0.33
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:64876087 original size:27 final size:26
Alignment explanation
Indices: 64876020--64876104 Score: 98
Period size: 27 Copynumber: 3.2 Consensus size: 26
64876010 CATGGCTGCT
* * *
64876020 AGAACAGATATTGTGACAGAGTCACA
1 AGAACAGATATTGTGGCAGAGACACC
*
64876046 AGATACAGATATTGTGGCAGAGCCACC
1 AGA-ACAGATATTGTGGCAGAGACACC
* *
64876073 AGAATAGATATTTGTGGCATAGACACC
1 AGAACAGATA-TTGTGGCAGAGACACC
64876100 AGAAC
1 AGAAC
64876105 GCTTCCTCCA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 9 0.18
27 41 0.82
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.20
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGACACC
Found at i:64876312 original size:11 final size:11
Alignment explanation
Indices: 64876296--64876321 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
64876286 ATTTTAGGGT
64876296 TTACGTACATA
1 TTACGTACATA
64876307 TTACGTACATA
1 TTACGTACATA
64876318 TTAC
1 TTAC
64876322 ACTTACCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (11 bp):
TTACGTACATA
Found at i:64881904 original size:19 final size:18
Alignment explanation
Indices: 64881880--64881918 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
64881870 AGCTCCCATG
64881880 TAGCTCTACACCAGCTCAT
1 TAGCTC-ACACCAGCTCAT
**
64881899 TAGCTCGGACCAGCTCAT
1 TAGCTCACACCAGCTCAT
64881917 TA
1 TA
64881919 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (18 bp):
TAGCTCACACCAGCTCAT
Found at i:64888798 original size:19 final size:19
Alignment explanation
Indices: 64888774--64888814 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
64888764 AGCTCCCATG
64888774 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
64888793 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
64888812 TAG
1 TAG
64888815 TAGCTCACGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.22
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:64892351 original size:27 final size:27
Alignment explanation
Indices: 64892299--64892410 Score: 122
Period size: 27 Copynumber: 4.2 Consensus size: 27
64892289 CATGGCTGCT
* * *
64892299 AGAACAGATA-TTCT-GAAAAGTCACC
1 AGAACAGATATTTGTGGCAAAGCCACC
64892324 AGATACAGATA-TTGTGGCAAAGCCACC
1 AGA-ACAGATATTTGTGGCAAAGCCACC
*
64892351 AGAACAGATATTTGTGGCATAGCCACC
1 AGAACAGATATTTGTGGCAAAGCCACC
* * *
64892378 AGAAATAGGTATTTGTGGCATAGCCACC
1 AG-AACAGATATTTGTGGCAAAGCCACC
64892406 AGAAC
1 AGAAC
64892411 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
25 3 0.04
26 17 0.22
27 31 0.41
28 25 0.33
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
AGAACAGATATTTGTGGCAAAGCCACC
Found at i:64892397 original size:28 final size:28
Alignment explanation
Indices: 64892320--64892409 Score: 130
Period size: 28 Copynumber: 3.3 Consensus size: 28
64892310 TCTGAAAAGT
* *
64892320 CACCAGATACAGATA-TTGTGGCAAAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
64892347 CACCAG-AACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
* *
64892374 CACCAGAAATAGGTATTTGTGGCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
64892402 CACCAGAA
1 CACCAGAA
64892410 CGCTTCCTCC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 7 0.12
27 23 0.40
28 27 0.47
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTGGCATAGC
Found at i:64892541 original size:26 final size:26
Alignment explanation
Indices: 64892512--64892561 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
64892502 CAAAATTAAC
*
64892512 CCTAGAGGTATAATGGTAATTTTGCA
1 CCTAGAGGTAAAATGGTAATTTTGCA
*
64892538 CCTAGGGGTAAAATGGTAATTTTG
1 CCTAGAGGTAAAATGGTAATTTTG
64892562 ATACTTAGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (26 bp):
CCTAGAGGTAAAATGGTAATTTTGCA
Found at i:64899079 original size:43 final size:43
Alignment explanation
Indices: 64898960--64899080 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
64898950 TTGTACAACA
* *
64898960 CCAACGTCCCAGACGTGGTCTTACATG-TAATCACATATCGATG
1 CCAACGTCCCAGACATGGTCTTACATGAT-ATCACAAATCGATG
* * * * *
64899003 CC-ACTATCCCAAACAGGGTCTTAACA-CAAATCACAAATCGATG
1 CCAAC-GTCCCAGACATGGTCTT-ACATGATATCACAAATCGATG
64899046 CCAACGTCCCAGACATGGTCTTACATGATATCACA
1 CCAACGTCCCAGACATGGTCTTACATGATATCACA
64899081 TATTGGAATC
Statistics
Matches: 61, Mismatches: 12, Indels: 10
0.73 0.14 0.12
Matches are distributed among these distances:
42 5 0.08
43 51 0.84
44 5 0.08
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.22
Consensus pattern (43 bp):
CCAACGTCCCAGACATGGTCTTACATGATATCACAAATCGATG
Found at i:64903147 original size:46 final size:46
Alignment explanation
Indices: 64903080--64903251 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
64903070 CACCCGCCCC
* *
64903080 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGAATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGAATCCA
64903126 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT--ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGA-ATCCA
* * * * * *
64903174 TCA-CGAACTCGGACTCAACTCAACTAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGAATCCA
*
64903219 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
64903252 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 2 0.02
45 1 0.01
46 58 0.56
47 27 0.26
48 3 0.03
49 3 0.03
50 2 0.02
51 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGAATCCA
Found at i:64903193 original size:93 final size:93
Alignment explanation
Indices: 64903085--64903255 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
64903075 GCCCCTAAGT
* *
64903085 GAACTCGGACTCAACTCAA-TGAGCTCGGGCGTTCGAATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACT-AGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCA
64903149 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
64903178 GAACTCGGACTCAACTCAACTAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACTAGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCAA
64903243 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64903256 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACTAGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64911106 original size:30 final size:30
Alignment explanation
Indices: 64911020--64911117 Score: 97
Period size: 30 Copynumber: 3.3 Consensus size: 30
64911010 TTAAACTAAA
* *
64911020 ATGAGCTAAGCTTTAGCTCGTGAGCTAAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * * * * *
64911050 TTGAGCTGAGATTAAACTCCTAAGCTGAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * *
64911080 CTGAGCTAAGGTTTAGCTCGTGAGCTGAAT
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
64911110 ATGAGCTA
1 ATGAGCTA
64911118 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
Found at i:64911347 original size:43 final size:43
Alignment explanation
Indices: 64911299--64911407 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 43
64911289 CCAGACGTGA
* *
64911299 TCTTACATGTAATCACATATCGATGCC-ACTGTCCCAAACGGGG
1 TCTTACATGAAATCACATATCGATGCCAAC-GTCCCAAACAGGG
** * * *
64911342 TCTTACACACAAATTACAAATCGATGCCAACGTCCCAAACATGG
1 TCTTACA-TGAAATCACATATCGATGCCAACGTCCCAAACAGGG
64911386 TCTTACATGAAATCACATATCG
1 TCTTACATGAAATCACATATCG
64911408 GAATCCTATG
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
43 18 0.34
44 33 0.62
45 2 0.04
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.25
Consensus pattern (43 bp):
TCTTACATGAAATCACATATCGATGCCAACGTCCCAAACAGGG
Found at i:64922516 original size:14 final size:14
Alignment explanation
Indices: 64922497--64922533 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
64922487 CATAAATCAC
64922497 TTTTTTTTTC-GAA
1 TTTTTTTTTCGGAA
64922510 TTTTTTTTTCGGAA
1 TTTTTTTTTCGGAA
64922524 TTTTTTTTTC
1 TTTTTTTTTC
64922534 AAACTTGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.11, C:0.08, G:0.08, T:0.73
Consensus pattern (14 bp):
TTTTTTTTTCGGAA
Found at i:64928813 original size:46 final size:46
Alignment explanation
Indices: 64928757--64928876 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 46
64928747 TATGTGTGCT
* *
64928757 AGTGTAAGACATGTATGGGACATGCATCAGCCATAATG-TGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAA-GACGAGAGCC
* *** * *
64928803 AGTGTAAGACATGTCTGGGACATGCATCGGTGTTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAAGACGAGAGCC
64928849 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
64928877 TGCCTCGCGA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
45 1 0.02
46 64 0.98
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATAAGACGAGAGCC
Found at i:64931114 original size:12 final size:12
Alignment explanation
Indices: 64931097--64931121 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64931087 GTAAAACTAC
64931097 TCAATACAGGTA
1 TCAATACAGGTA
64931109 TCAATACAGGTA
1 TCAATACAGGTA
64931121 T
1 T
64931122 GTACGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (12 bp):
TCAATACAGGTA
Found at i:64944628 original size:18 final size:17
Alignment explanation
Indices: 64944605--64944640 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
64944595 GATGGGCTAA
64944605 AATGGGCCGTGTAGGCCC
1 AATGGG-CGTGTAGGCCC
*
64944623 AATGGGCTTGTAGGCCC
1 AATGGGCGTGTAGGCCC
64944640 A
1 A
64944641 CACGGGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.19, C:0.25, G:0.36, T:0.19
Consensus pattern (17 bp):
AATGGGCGTGTAGGCCC
Found at i:64945311 original size:21 final size:21
Alignment explanation
Indices: 64945270--64945311 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
64945260 TATCCCCACA
* *
64945270 TGGTGTATTGGTTGGTATGGG
1 TGGTGCATTGGTTGGGATGGG
*
64945291 TGGTGCATTGGTTGGGCTGGG
1 TGGTGCATTGGTTGGGATGGG
64945312 CTGGGCTGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.07, C:0.05, G:0.50, T:0.38
Consensus pattern (21 bp):
TGGTGCATTGGTTGGGATGGG
Found at i:64947391 original size:27 final size:27
Alignment explanation
Indices: 64947349--64947668 Score: 353
Period size: 27 Copynumber: 12.0 Consensus size: 27
64947339 AAACATATAT
* * *
64947349 CACATAGGGGCAAAACAATCAATTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
64947376 CATATAAGGGCGAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
64947403 CACATAAGGGCAAAATAGTTATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
64947430 TACATAAGGGCAAAACTGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
64947457 CAGATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
64947484 CACATAAGGGCAAAATAATCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
64947511 CA-ATTAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
64947537 CACATAAGGGTAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
64947564 CACATAAGGGCAAAACAATCATTTT-C
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
64947590 TCA-ATTAGGGCAAAACAATCATTTTAT
1 -CACATAAGGGCAAAACAGTCATTTTAC
* * *
64947617 CA-ATTAGGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
64947643 CATATAAGGG-AGAAATAGTCATTTTA
1 CACATAAGGGCA-AAACAGTCATTTTA
64947669 TCATTTAGGG
Statistics
Matches: 253, Mismatches: 35, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
26 70 0.28
27 183 0.72
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.28
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:64947559 original size:80 final size:79
Alignment explanation
Indices: 64947356--64947678 Score: 398
Period size: 80 Copynumber: 4.0 Consensus size: 79
64947346 TATCACATAG
* * *
64947356 GGGCAAAACAATCAATTTACCATATAAGGGCGAAACAGTCATTTTACCACATAAGGGCAAAATAG
1 GGGCAAAACAATCATTTTACCA-ATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAA
* *
64947421 TTATTTTA-CTACATAA
65 TCATTTTATC-A-ATTA
**
64947437 GGGCAAAACTGTCATTTTACCAGATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAA
1 GGGCAAAACAATCATTTTACCA-ATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAA
64947502 TCATTTTATCAATTA
65 TCATTTTATCAATTA
* * * * *
64947517 GGGCAAAATAGTCATTTTACCACATAAGGGTAAAACAATCATTTTACCACATAAGGGCAAAACAA
1 GGGCAAAACAATCATTTTACCA-ATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAA
*
64947582 TCATTTTCTCAATTA
65 TCATTTTATCAATTA
* * * * * *
64947597 GGGCAAAACAATCATTTTATCAATTAGGGAAAAATAGTCATTTTACCATATAAGGG-AGAAATAG
1 GGGCAAAACAATCATTTTACCAATAAGGGCAAAACAGTCATTTTACCACATAAGGGCA-AAATAA
*
64947661 TCATTTTATCATTTA
65 TCATTTTATCAATTA
64947676 GGG
1 GGG
64947679 GTCCAGGCAC
Statistics
Matches: 213, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
78 1 0.00
79 49 0.23
80 95 0.45
81 67 0.31
82 1 0.00
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (79 bp):
GGGCAAAACAATCATTTTACCAATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAAT
CATTTTATCAATTA
Found at i:64950393 original size:93 final size:93
Alignment explanation
Indices: 64950281--64950451 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
64950271 GCCCATAAGT
* *
64950281 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64950346 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
64950374 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64950439 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64950452 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64950467 original size:46 final size:46
Alignment explanation
Indices: 64950273--64950453 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
64950263 TGTAACCCGC
* * *
64950273 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
64950319 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
64950369 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
64950412 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
64950454 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:64952845 original size:30 final size:30
Alignment explanation
Indices: 64952801--64952889 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
64952791 CAAAGATAAC
*
64952801 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
64952830 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
64952860 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
64952890 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Done.