Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 219 of 378
Found at i:64952849 original size:15 final size:14
Alignment explanation
Indices: 64952801--64952883 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
64952791 CAAAGATAAC
*
64952801 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
64952815 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
64952830 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
64952845 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
64952860 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
64952875 AAGAAACCC
1 AAGAAACCC
64952884 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:64952889 original size:15 final size:15
Alignment explanation
Indices: 64952812--64952889 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
64952802 AGAAAACCGA
64952812 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
64952827 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
64952841 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
64952856 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
64952872 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
64952887 ATA
1 ATA
64952890 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:64955949 original size:93 final size:93
Alignment explanation
Indices: 64955837--64956007 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
64955827 GCCCATAAGT
* *
64955837 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64955902 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
64955930 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64955995 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64956008 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64956023 original size:46 final size:46
Alignment explanation
Indices: 64955829--64956009 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
64955819 TGTAACCCGC
* * *
64955829 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
64955875 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
64955925 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
64955968 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
64956010 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:64972737 original size:43 final size:43
Alignment explanation
Indices: 64972689--64972839 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 43
64972679 TTATCCAGAC
*
64972689 GTGATTACATGTAAGACCATGTTTGGGACATTGACATTGTATT
1 GTGATTACATGTAAGACCATGTTTGGGACATTGACATCGTATT
* * * ** *
64972732 GTGATTACGTGTAAGACCATGTCTGAGACATTGGTATCGT-TA
1 GTGATTACATGTAAGACCATGTTTGGGACATTGACATCGTATT
* * * * *
64972774 GTCGATTTCGTGTAAGACCTTGTTTGGGACAGTGCCATCG-ATAT
1 GT-GATTACATGTAAGACCATGTTTGGGACATTGACATCGTAT-T
* *
64972818 GTGATAACATTTAAGACCATGT
1 GTGATTACATGTAAGACCATGT
64972840 AACACCCCTT
Statistics
Matches: 85, Mismatches: 20, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
42 3 0.04
43 80 0.94
44 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (43 bp):
GTGATTACATGTAAGACCATGTTTGGGACATTGACATCGTATT
Found at i:64974851 original size:28 final size:28
Alignment explanation
Indices: 64974811--64974865 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
64974801 ATCCGTGCTG
64974811 ATGCATGTCCCAGACATGTCTTACACTA
1 ATGCATGTCCCAGACATGTCTTACACTA
64974839 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
64974866 GGCTTACATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (28 bp):
ATGCATGTCCCAGACATGTCTTACACTA
Found at i:64975565 original size:31 final size:31
Alignment explanation
Indices: 64975530--64975596 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
64975520 ATTTATTAGA
64975530 TTTCTATAAGGTTTAAGACATGATGAACATT
1 TTTCTATAAGGTTTAAGACATGATGAACATT
*
64975561 TTTCTATAAGGTTTAAGACATGCTGAACATT
1 TTTCTATAAGGTTTAAGACATGATGAACATT
64975592 TTTCT
1 TTTCT
64975597 CTTCTATGGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (31 bp):
TTTCTATAAGGTTTAAGACATGATGAACATT
Found at i:64983964 original size:10 final size:10
Alignment explanation
Indices: 64983951--64983996 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
64983941 AGCTCACTTG
64983951 AGCTCGTTTT
1 AGCTCGTTTT
*
64983961 AGCTCGTTTG
1 AGCTCGTTTT
*
64983971 AGCTCGAATTT
1 AGCTCG-TTTT
*
64983982 AGCTCGTTTC
1 AGCTCGTTTT
64983992 AGCTC
1 AGCTC
64983997 ATTCCTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (10 bp):
AGCTCGTTTT
Found at i:64983984 original size:21 final size:20
Alignment explanation
Indices: 64983948--64983996 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
64983938 ATCAGCTCAC
*
64983948 TTGAGCTCGTTTTAGCTCGT
1 TTGAGCTCGATTTAGCTCGT
64983968 TTGAGCTCGAATTTAGCTCGT
1 TTGAGCTCG-ATTTAGCTCGT
*
64983989 TTCAGCTC
1 TTGAGCTC
64983997 ATTCCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.14, C:0.22, G:0.22, T:0.41
Consensus pattern (20 bp):
TTGAGCTCGATTTAGCTCGT
Found at i:64984239 original size:13 final size:13
Alignment explanation
Indices: 64984221--64984249 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
64984211 AATAGTTGTG
64984221 TGTTATTTAATTA
1 TGTTATTTAATTA
64984234 TGTTATTTAATTA
1 TGTTATTTAATTA
64984247 TGT
1 TGT
64984250 AGGTTAGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:64989557 original size:33 final size:34
Alignment explanation
Indices: 64989481--64989575 Score: 113
Period size: 34 Copynumber: 2.8 Consensus size: 34
64989471 GTTTCAGTTA
* * * *
64989481 GGGCCTTAGCCCATTTCAGAATCAGAAACAATGT
1 GGGCCTAAGCCCATTTCAGAAACAGTATCAATGT
*
64989515 GGGCCTAAGCCCATTTCAGAAACAGTATCAGTG-
1 GGGCCTAAGCCCATTTCAGAAACAGTATCAATGT
*
64989548 GGGCCTAAGCCCATTACA-AAATCAGTAT
1 GGGCCTAAGCCCATTTCAGAAA-CAGTAT
64989576 AGTATGCAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
32 3 0.06
33 23 0.43
34 28 0.52
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAGAAACAGTATCAATGT
Found at i:64992791 original size:55 final size:54
Alignment explanation
Indices: 64992683--64992937 Score: 265
Period size: 55 Copynumber: 4.8 Consensus size: 54
64992673 ATTAGGGTTT
* *
64992683 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGGC
* * * *
64992738 AAGGATATCATGTAAGACCATGTCAAGACATTGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGC
* * *
64992793 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * *
64992846 AAGGATACCATGTAAGACCATGTCAAGATATGGCAATGGTAAGTT-T-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * *
64992895 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
64992938 GTACCCGCGT
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 39 0.23
52 6 0.04
53 44 0.26
54 8 0.05
55 70 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:64992889 original size:108 final size:110
Alignment explanation
Indices: 64992690--64992890 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
64992680 TTTAAGGATA
*
64992690 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
64992755 CCATGTCAAGACATTGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
*
64992800 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
64992862 ACCATGTCAAGATATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
64992891 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:64993031 original size:23 final size:24
Alignment explanation
Indices: 64993005--64993049 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
64992995 AAGGTAAGGT
64993005 AAGGTAAGACAAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
64993028 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
64993050 GAAGAGCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:64993140 original size:8 final size:8
Alignment explanation
Indices: 64993127--64993151 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
64993117 AATAAATTTG
64993127 ATTTAAGT
1 ATTTAAGT
64993135 ATTTAAGT
1 ATTTAAGT
64993143 ATTTAAGT
1 ATTTAAGT
64993151 A
1 A
64993152 AGTGAGTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (8 bp):
ATTTAAGT
Found at i:65000222 original size:53 final size:53
Alignment explanation
Indices: 65000041--65000295 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
65000031 ATTAGGGTTT
*
65000041 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * ** *
65000096 AAGGATATCATGTAAGACCATGTCAAGACATCACATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
65000151 AAAGG-TCCCATGTGAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
65000204 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCA-AA-G-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG-TTCATAAGGC
* * * * *
65000255 --GGATGCCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
65000296 GTACCCGCGT
Statistics
Matches: 169, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
49 37 0.22
52 7 0.04
53 43 0.25
54 12 0.07
55 66 0.39
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:65000247 original size:108 final size:110
Alignment explanation
Indices: 65000048--65000248 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
65000038 TTTAAGGATA
*
65000048 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
65000113 CCATGTCAAGACATCACATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATCACAATGATAAGTTACTATAAGGCAAAGGTC
* *
65000158 CCATGTGAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
** *
65000220 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATCACAATGATAAGTT
65000249 TCAAAGGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATCACAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:65000389 original size:23 final size:24
Alignment explanation
Indices: 65000363--65000407 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
65000353 AAGGTAAGGT
*
65000363 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
65000386 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
65000408 GATGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:65000507 original size:16 final size:16
Alignment explanation
Indices: 65000486--65000516 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65000476 ATAAATTTGA
65000486 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
65000502 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
65000517 AATGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:65015134 original size:27 final size:27
Alignment explanation
Indices: 65015104--65015524 Score: 517
Period size: 27 Copynumber: 15.7 Consensus size: 27
65015094 TTAGTTTACC
65015104 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
65015131 AAATTACCAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
65015158 AAATTACCAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65015185 AAATTACCAAAATA-CCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
65015211 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
65015238 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65015265 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
65015292 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65015319 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65015346 AAATTACCAAAAT-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
65015372 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
65015399 AAATTACCAAAATACCCCTGATTTTTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
65015426 AAATTACCAAAATACCCCTGACTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
65015453 AAATTACCAAAATACCCTTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
65015480 AAATTATCAAAATA-CTCTCGATTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* *
65015507 AAA-TATCGAAATACCCCT
1 AAATTACCAAAATACCCCT
65015525 ATAGGGTAGA
Statistics
Matches: 344, Mismatches: 46, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
26 55 0.16
27 289 0.84
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:65015366 original size:134 final size:134
Alignment explanation
Indices: 65015104--65015524 Score: 596
Period size: 134 Copynumber: 3.1 Consensus size: 134
65015094 TTAGTTTACC
65015104 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTTGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTTGTTTATAAAATTACCAAA
* * * *
65015169 ATACCCTTTGTTTATAAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCCCTGGT
66 ATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAAT-CCTCTGGT
65015233 TTGTA
130 TTGTA
*
65015238 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTTGTTTATAAAATTACCAAA
* * *
65015303 ATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATCCTCTGGTT
66 ATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATCCTCTGGTT
65015368 TGTA
131 TGTA
* * * * *
65015372 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTGATTTTTGAAATTACCAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTTG-TTTATAAAATTACCAA
** * * * * *
65015436 AATACCCCTGACTTGTAAAATTACCAAAATACCCTTAATTTGTGAAATTATCAAAATACTCTCGA
65 AATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATCCTCT-GG
65015501 TTTGTA
129 TTTGTA
* *
65015507 AAA-TATCGAAATACCCCT
1 AAATTACCAAAATACCCCT
65015525 ATAGGGTAGA
Statistics
Matches: 259, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
133 2 0.01
134 227 0.88
135 30 0.12
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (134 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTTGTTTATAAAATTACCAAA
ATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATCCTCTGGTT
TGTA
Found at i:65015545 original size:27 final size:27
Alignment explanation
Indices: 65015513--65015752 Score: 317
Period size: 27 Copynumber: 9.0 Consensus size: 27
65015503 TGTAAAATAT
* *
65015513 CGAAATACCCCTATAGGGTAGAATCAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
65015540 CGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
65015567 CGGAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
65015594 TG-AATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
65015620 CAAAATACCCCTGTA-GGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
65015646 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
65015673 CAAAATACCCCTATAGGGTGGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
65015700 CG-AATACCCCTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
65015726 CGATATA-CCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
65015752 C
1 C
65015753 ATTTTGCCCC
Statistics
Matches: 191, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
26 90 0.47
27 101 0.53
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:65015565 original size:134 final size:134
Alignment explanation
Indices: 65015104--65015579 Score: 381
Period size: 134 Copynumber: 3.6 Consensus size: 134
65015094 TTAGTTTACC
* * ** * ** ** *
65015104 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCCTTTGTTTATAAAATTACCAA
1 AAATTATCAAAATACCCCTAGTGGGTAAAATCACCAAAATACCCCTGAGGGTA-GAAATTACCAA
* * * * * *
65015168 AATACCCTTTG-TTTATAAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCCCTG
65 AATACCC-CTGACTTGTAAAATTACCAAAATACCCTTAATTTATAAAATTACCAAAATA-CTCTG
*
65015231 GTTTGTA
128 ATTTGTA
* * ** * * ** ** *
65015238 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATA-CCCTTTGTTTATAAAATTACCAA
1 AAATTATCAAAATACCCCTAGTGGGTAAAATCACCAAAATACCCCTGAGGGTA-GAAATTACCAA
** * ** * *
65015302 AATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATCCTCTGGT
65 AATACCCCTGACTTGTAAAATTACCAAAATACCCTTAATTTATAAAATTACCAAAATACTCTGAT
65015367 TTGTA
130 TTGTA
** * *** *
65015372 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTTTGAAATTACCAAA
1 AAATTATCAAAATACCCCTAGTGGGTAAAATCACCAAAATACCCCTGAGGGTAGAAATTACCAAA
* * *
65015437 ATACCCCTGACTTGTAAAATTACCAAAATACCCTTAATTTGTGAAATTATCAAAATACTCTCGAT
66 ATACCCCTGACTTGTAAAATTACCAAAATACCCTTAATTTATAAAATTACCAAAATACTCT-GAT
65015502 TTGTA
130 TTGTA
* * * * *
65015507 AAA-TATCGAAATACCCCTA-TAGGGTAGAATCACCGAAATACCCCTGTAGGGTAG-AATTATCG
1 AAATTATCAAAATACCCCTAGT-GGGTAAAATCACCAAAATACCCCTG-AGGGTAGAAATTACCA
*
65015569 GAATACCCCTG
64 AAATACCCCTG
65015580 TAGGGTAGAA
Statistics
Matches: 297, Mismatches: 39, Indels: 12
0.85 0.11 0.03
Matches are distributed among these distances:
133 3 0.01
134 254 0.86
135 40 0.13
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (134 bp):
AAATTATCAAAATACCCCTAGTGGGTAAAATCACCAAAATACCCCTGAGGGTAGAAATTACCAAA
ATACCCCTGACTTGTAAAATTACCAAAATACCCTTAATTTATAAAATTACCAAAATACTCTGATT
TGTA
Found at i:65015734 original size:53 final size:54
Alignment explanation
Indices: 65015513--65015734 Score: 315
Period size: 53 Copynumber: 4.2 Consensus size: 54
65015503 TGTAAAATAT
* *
65015513 CGAAATACCCCTATAGGGTAGAATCACCGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAC
* * *
65015567 CGGAATACCCCTGTAGGGTAGAATTACTG-AATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAC
* *
65015620 CAAAATACCCCTGTA-GGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAC
* * * *
65015673 CAAAATACCCCTATAGGGTGGAATTACCG-AATACCCCTGTGGGGTAAAATTAC
1 CGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAC
*
65015726 CGATATACC
1 CGAAATACC
65015735 TTGTGGGGTA
Statistics
Matches: 152, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
52 12 0.08
53 103 0.68
54 37 0.24
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (54 bp):
CGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAC
Found at i:65016231 original size:22 final size:22
Alignment explanation
Indices: 65016183--65016243 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
65016173 AGCCTTCTGT
* *
65016183 TTATGGCTTTGTGTCAACCTAC
1 TTATGGCTCTGTGCCAACCTAC
*
65016205 ATATGGCTCTGTGCCAACCTGA-
1 TTATGGCTCTGTGCCAACCT-AC
*
65016227 TTATGGCTGTGTGCCAA
1 TTATGGCTCTGTGCCAA
65016244 ACGTATTTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
22 32 0.97
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
TTATGGCTCTGTGCCAACCTAC
Found at i:65016422 original size:25 final size:26
Alignment explanation
Indices: 65016394--65016449 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
65016384 TGCCACGTAT
* *
65016394 TCTGTTA-AGTGGCTTTGCCACATTA
1 TCTGTTATAGTGGCTCTGCCACAATA
*
65016419 TCTGTTATGGTGGCTCTGCCACAATA
1 TCTGTTATAGTGGCTCTGCCACAATA
65016445 TCTGT
1 TCTGT
65016450 ATCTGGTTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 7 0.26
26 20 0.74
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.39
Consensus pattern (26 bp):
TCTGTTATAGTGGCTCTGCCACAATA
Found at i:65016608 original size:6 final size:6
Alignment explanation
Indices: 65016570--65016689 Score: 86
Period size: 6 Copynumber: 19.3 Consensus size: 6
65016560 TTGCATTCAC
* * *
65016570 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
65016620 -TTACCTG ATACTG ATTTTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
65016670 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
65016690 AATATTTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 6 0.07
6 66 0.73
7 15 0.17
8 3 0.03
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:65016616 original size:31 final size:31
Alignment explanation
Indices: 65016570--65016680 Score: 168
Period size: 31 Copynumber: 3.5 Consensus size: 31
65016560 TTGCATTCAC
*
65016570 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
65016602 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
65016633 ATTTTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
65016664 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
65016681 AGTTCTGATA
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
31 67 0.91
32 7 0.09
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:65016658 original size:25 final size:24
Alignment explanation
Indices: 65016593--65016677 Score: 93
Period size: 25 Copynumber: 3.5 Consensus size: 24
65016583 ATTCTGTTAC
* *
65016593 CTGATACTGATTCTGATTTTGATT
1 CTGATTCTGATACTGATTTTGATT
65016617 CTG-TTACCTGATACTGATTTTGATT
1 CTGATT--CTGATACTGATTTTGATT
*
65016642 CTGATTCTG-TCACCTGATTCTGATT
1 CTGATTCTGAT-A-CTGATTTTGATT
65016667 CTGATTCTGAT
1 CTGATTCTGAT
65016678 TCTAGTTCTG
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
23 2 0.04
24 7 0.13
25 40 0.77
26 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (24 bp):
CTGATTCTGATACTGATTTTGATT
Found at i:65018541 original size:27 final size:27
Alignment explanation
Indices: 65018520--65019054 Score: 598
Period size: 27 Copynumber: 19.7 Consensus size: 27
65018510 TTAGTTTACC
65018520 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * **
65018547 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
65018574 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
65018601 AAATTACCAAAATACCCCTGGTTGGTTTGTA
1 AAATTACCAAAATACCCC----TAGTTTGTA
* * * *
65018632 AAATTACTAAAA-ACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
65018658 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
65018685 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
65018712 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
65018739 AAATTATCAAAATACCCCTGGCTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
65018766 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* ** *
65018793 AAATTACTAAAATACCTTTTA-TTTATA
1 AAATTACCAAAATACC-CCTAGTTTGTA
*
65018820 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
65018847 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
65018874 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
65018901 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
65018928 AAATTACCAAAATACTCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
*
65018955 AAATTACCAAAATACCCCT-GACTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
*
65018982 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
* * *
65019009 AAATTATCAAAATA-CTCTCGATTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
* *
65019036 AAA-TATCGAAATACCCCTA
1 AAATTACCAAAATACCCCTA
65019055 TAGGGTAGAA
Statistics
Matches: 436, Mismatches: 62, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
26 32 0.07
27 379 0.87
28 1 0.00
30 4 0.01
31 20 0.05
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:65019074 original size:27 final size:27
Alignment explanation
Indices: 65019042--65019257 Score: 290
Period size: 27 Copynumber: 8.0 Consensus size: 27
65019032 TGTAAAATAT
* *
65019042 CGAAATACCCCTATAGGGTAGAATCAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
65019069 CGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
65019096 CGGAATTCCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
65019123 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
65019150 CAAAATACCCCTGTATGGTAGAATTGC
1 CGAAATACCCCTGTAGGGTAGAATTAC
65019177 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
65019204 CAAAATACCCCTGTAGGGTGGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
65019231 CGAGATA-CCCTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
65019257 C
1 C
65019258 ATTTTGCCCC
Statistics
Matches: 164, Mismatches: 25, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 16 0.10
27 148 0.90
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:65019736 original size:22 final size:22
Alignment explanation
Indices: 65019684--65019748 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
65019674 TTAAAGCCTT
* *
65019684 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
65019706 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
65019728 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
65019749 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:65019927 original size:25 final size:26
Alignment explanation
Indices: 65019899--65019954 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
65019889 TGCCACGTAT
* *
65019899 TCTGTT-AAGTGGCTTTGCCACATTA
1 TCTGTTCAAGTGGCTCTGCCACAATA
**
65019924 TCTGTTCTGGTGGCTCTGCCACAATA
1 TCTGTTCAAGTGGCTCTGCCACAATA
65019950 TCTGT
1 TCTGT
65019955 ATCTCGTTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.16, C:0.23, G:0.21, T:0.39
Consensus pattern (26 bp):
TCTGTTCAAGTGGCTCTGCCACAATA
Found at i:65020120 original size:31 final size:31
Alignment explanation
Indices: 65020083--65020185 Score: 170
Period size: 31 Copynumber: 3.3 Consensus size: 31
65020073 ACATTCTGAT
65020083 TTTTGATTCTGTTACCTGATACTGATTTTGA
1 TTTTGATTCTGTTACCTGATACTGATTTTGA
65020114 TTTTGATTCTGTTACCTGATACTGATTTTGA
1 TTTTGATTCTGTTACCTGATACTGATTTTGA
* * *
65020145 TTTTGATTCTGTCACCTGATTCTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTTTGA
*
65020176 TTCTGATTCT
1 TTTTGATTCT
65020186 AGTTCTGATA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTGATTTTGA
Found at i:65020169 original size:6 final size:6
Alignment explanation
Indices: 65020075--65020194 Score: 68
Period size: 6 Copynumber: 19.3 Consensus size: 6
65020065 TTGCATTCAC
* * * *
65020075 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
65020125 -TTACCTG ATACTG ATTTTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
65020175 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
65020195 AATATTTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 6 0.07
6 66 0.73
7 15 0.17
8 3 0.03
ACGTcount: A:0.18, C:0.15, G:0.16, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:65021065 original size:22 final size:20
Alignment explanation
Indices: 65021007--65021058 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 20
65020997 ATCACCCCAA
*
65021007 TTTTATTTTATTTTATTTAT
1 TTTTATTTTATATTATTTAT
65021027 TTTTAATTGTTATATTATTTAT
1 TTTT-ATT-TTATATTATTTAT
65021049 TTTTATTTTA
1 TTTTATTTTA
65021059 CTAATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 7 0.24
21 6 0.21
22 16 0.55
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (20 bp):
TTTTATTTTATATTATTTAT
Found at i:65021067 original size:4 final size:4
Alignment explanation
Indices: 65021060--65021084 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
65021050 TTTATTTTAC
65021060 TAAT TAAT TAAT TAAT TAAT TAAT T
1 TAAT TAAT TAAT TAAT TAAT TAAT T
65021085 TAGTATTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TAAT
Found at i:65021120 original size:16 final size:16
Alignment explanation
Indices: 65021099--65021163 Score: 66
Period size: 16 Copynumber: 4.1 Consensus size: 16
65021089 ATTCTTATAC
65021099 TTATATTTTTAATTTT
1 TTATATTTTTAATTTT
65021115 TTATA-TTTTAATTTTT
1 TTATATTTTTAA-TTTT
65021131 TTATATACTTTT-A-TTT
1 TTATAT--TTTTAATTTT
*
65021147 TTAT-TTTTTTATTTT
1 TTATATTTTTAATTTT
65021162 TT
1 TT
65021164 CTTTCGTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 4 0.09
14 1 0.02
15 12 0.28
16 21 0.49
18 1 0.02
19 4 0.09
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATATTTTTAATTTT
Found at i:65021135 original size:32 final size:31
Alignment explanation
Indices: 65021099--65021163 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 31
65021089 ATTCTTATAC
65021099 TTATAT-TTTTAATTTTTTATATTTTAATTTTT
1 TTATATATTTT-A-TTTTTATATTTTAATTTTT
* *
65021131 TTATATACTTTTATTTTTATTTTTTTATTTTT
1 TTATATA-TTTTATTTTTATATTTTAATTTTT
65021163 T
1 T
65021164 CTTTCGTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 24 0.83
33 1 0.03
34 4 0.14
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.77
Consensus pattern (31 bp):
TTATATATTTTATTTTTATATTTTAATTTTT
Found at i:65021137 original size:18 final size:18
Alignment explanation
Indices: 65021099--65021148 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
65021089 ATTCTTATAC
65021099 TTATAT-TTTTAA--TTT
1 TTATATATTTTAATTTTT
65021114 TT-TATATTTTAATTTTT
1 TTATATATTTTAATTTTT
65021131 TTATATACTTTT-ATTTTT
1 TTATATA-TTTTAATTTTT
65021149 ATTTTTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 3 0.10
15 8 0.27
17 5 0.17
18 10 0.33
19 4 0.13
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (18 bp):
TTATATATTTTAATTTTT
Found at i:65021157 original size:8 final size:8
Alignment explanation
Indices: 65021099--65021163 Score: 53
Period size: 8 Copynumber: 8.1 Consensus size: 8
65021089 ATTCTTATAC
*
65021099 TTATATTT
1 TTATTTTT
*
65021107 TTAATTTT
1 TTATTTTT
*
65021115 TTATATTT
1 TTATTTTT
*
65021123 TAATTTTT
1 TTATTTTT
*
65021131 TTATATACTT
1 TTAT-T-TTT
65021141 TTA--TTT
1 TTATTTTT
65021147 TTATTTTT
1 TTATTTTT
65021155 TTATTTTT
1 TTATTTTT
65021163 T
1 T
65021164 CTTTCGTATT
Statistics
Matches: 44, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
6 5 0.11
8 33 0.75
9 1 0.02
10 5 0.11
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.77
Consensus pattern (8 bp):
TTATTTTT
Found at i:65021239 original size:3 final size:3
Alignment explanation
Indices: 65021233--65021314 Score: 61
Period size: 3 Copynumber: 28.7 Consensus size: 3
65021223 ATTATTGAGT
*
65021233 TTA TTA TTA TT- TTA TTA TTA TTA TT- TTA TTA TT- TTA TCT- TTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
* *
65021275 TTT TTAA TT- TTG TT- TTA GTT- TTA TTA TTA TTA TTA TTA TT
1 TTA TT-A TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TT
65021315 TTCTCTTCAA
Statistics
Matches: 67, Mismatches: 2, Indels: 20
0.75 0.02 0.22
Matches are distributed among these distances:
2 13 0.19
3 49 0.73
4 5 0.07
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (3 bp):
TTA
Found at i:65021248 original size:11 final size:11
Alignment explanation
Indices: 65021222--65021314 Score: 65
Period size: 11 Copynumber: 8.6 Consensus size: 11
65021212 AGTTTATTGA
*
65021222 TATTATTGAGTT
1 TATTATT-ATTT
65021234 TATTATTATTT
1 TATTATTATTT
65021245 TATTATTATTAT
1 TATTATTATT-T
65021257 T-TTATTATTT
1 TATTATTATTT
*
65021267 TATCT-TT-CTT
1 TAT-TATTATTT
65021277 T-TTA--ATTT
1 TATTATTATTT
*
65021285 TGTT-TTAGTTT
1 TATTATTA-TTT
65021296 TATTATTATTAT
1 TATTATTATT-T
65021308 TATTATT
1 TATTATT
65021315 TTCTCTTCAA
Statistics
Matches: 66, Mismatches: 4, Indels: 22
0.72 0.04 0.24
Matches are distributed among these distances:
8 4 0.06
9 3 0.05
10 6 0.09
11 32 0.48
12 21 0.32
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.70
Consensus pattern (11 bp):
TATTATTATTT
Found at i:65021249 original size:8 final size:8
Alignment explanation
Indices: 65021236--65021269 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
65021226 ATTGAGTTTA
65021236 TTATTATT
1 TTATTATT
65021244 TTATTA--
1 TTATTATT
65021250 TTATTATT
1 TTATTATT
65021258 TTATTATT
1 TTATTATT
65021266 TTAT
1 TTAT
65021270 CTTTCTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
8 18 0.75
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TTATTATT
Found at i:65022450 original size:17 final size:18
Alignment explanation
Indices: 65022409--65022456 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
65022399 TTCGATTGAT
*
65022409 GTAATTATTCAATATTAG
1 GTAATTTTTCAATATTAG
* *
65022427 TTTATTTTTCAA-ATTAG
1 GTAATTTTTCAATATTAG
*
65022444 GTAATTTATCAAT
1 GTAATTTTTCAAT
65022457 TTGATCTCAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.35, C:0.06, G:0.08, T:0.50
Consensus pattern (18 bp):
GTAATTTTTCAATATTAG
Found at i:65025829 original size:47 final size:47
Alignment explanation
Indices: 65025766--65025934 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
65025756 GCATTGGCAC
* *
65025766 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
65025813 TAAGACAAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
65025860 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
65025907 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
65025935 CCAAGGCATG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 116 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:65025970 original size:54 final size:52
Alignment explanation
Indices: 65025907--65026172 Score: 286
Period size: 54 Copynumber: 5.0 Consensus size: 52
65025897 TGGCATTTGG
65025907 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGA-AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC-A
*
65025961 TAAGATAAGGATATCATGCAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGA-AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC-A
* * * *
65026015 TAAGGAAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACA
1 TAA-GAAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CA
* ** * *
65026069 -AGGCAAAGG-TCCCATG-ACAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
1 TAAG-AAAGGATATCATGTA-AGACCATGCCAAGGCATGGCATTGATAAGTTCA
* * * * * *
65026120 TAAGGCAAGGATACCACGTAAGACCATGGCAAGACATGGCAATGATAAGTTCA
1 TAA-GAAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCA
65026173 AAAAGGAAAA
Statistics
Matches: 182, Mismatches: 22, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
51 3 0.02
52 38 0.21
53 40 0.22
54 98 0.54
55 3 0.02
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (52 bp):
TAAGAAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCA
Found at i:65026155 original size:105 final size:106
Alignment explanation
Indices: 65025981--65026170 Score: 292
Period size: 105 Copynumber: 1.8 Consensus size: 106
65025971 ATATCATGCA
* * *
65025981 AGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAATCATGTAAGACCATGTCA
1 AGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAACCACGTAAGACCATGGCA
* *
65026046 AGACATGGCATTGATGAGTTACAAGGCAAAGGTCCCATGAC
66 AGACATGGCAATGATAAGTTACAAGGCAAAGGTCCCATGAC
* * * *
65026087 AGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACCATGGCA
1 AGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAACCACGTAAGACCATGGCA
65026151 AGACATGGCAATGATAAGTT
66 AGACATGGCAATGATAAGTT
65026171 CAAAAAGGAA
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
105 45 0.60
106 30 0.40
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (106 bp):
AGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAACCACGTAAGACCATGGCA
AGACATGGCAATGATAAGTTACAAGGCAAAGGTCCCATGAC
Found at i:65030385 original size:40 final size:40
Alignment explanation
Indices: 65030340--65030507 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
65030330 CGGAATATAA
65030340 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
65030380 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
65030420 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
65030460 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
65030500 CCGGATAT
1 CCGGATAT
65030508 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 105 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:65032240 original size:27 final size:27
Alignment explanation
Indices: 65032164--65032241 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
65032154 GCTGTCACAG
*
65032164 AAATACCCTTGTAGGGTAAAAATACCA
1 AAATACCCTTGTAGGGTAAAATTACCA
* *
65032191 AAATACCCCTGTAGGGTAGAATTACCA
1 AAATACCCTTGTAGGGTAAAATTACCA
* *
65032218 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCCTTGTAGGGTAAAATTA
65032242 TCATTTTGCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.24
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAAAATTACCA
Found at i:65035950 original size:46 final size:46
Alignment explanation
Indices: 65035897--65036072 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
65035887 TATTTGGGCA
65035897 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
65035943 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * *
65035990 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
65036036 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65036073 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 65 0.60
47 31 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:65036052 original size:93 final size:93
Alignment explanation
Indices: 65035893--65036065 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
65035883 GGGATATTTG
* *
65035893 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
65035958 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
65035986 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
65036051 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
65036066 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:65038664 original size:46 final size:46
Alignment explanation
Indices: 65038608--65038786 Score: 229
Period size: 46 Copynumber: 3.9 Consensus size: 46
65038598 GGGATATTGG
65038608 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
65038654 GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA
*
65038700 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * *
65038747 ACACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65038787 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.62
47 32 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:65038766 original size:93 final size:93
Alignment explanation
Indices: 65038607--65038778 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
65038597 TGGGATATTG
* **
65038607 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
65038672 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
65038700 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
65038765 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
65038779 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:65040166 original size:27 final size:26
Alignment explanation
Indices: 65040128--65040187 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
65040118 CGACATATAT
* *
65040128 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
65040154 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
65040181 ATATCTG
1 ATATCTG
65040188 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:65043902 original size:28 final size:29
Alignment explanation
Indices: 65043870--65043968 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
65043860 ATAATAAGCC
*
65043870 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
65043898 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
65043926 CGTACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
65043955 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65043969 CAATTCATGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:65044625 original size:2 final size:2
Alignment explanation
Indices: 65044607--65044640 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
65044597 TGATGGCCGA
* *
65044607 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65044641 CAACTATGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65046601 original size:47 final size:47
Alignment explanation
Indices: 65046477--65046911 Score: 683
Period size: 47 Copynumber: 9.3 Consensus size: 47
65046467 CCCTTCGGGA
* *
65046477 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * * *
65046524 C-TATCATATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65046570 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65046617 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65046664 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65046711 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65046758 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
** *
65046805 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65046852 CTTGTCACATATATACACTTTCACATTTATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65046899 CTTATCACATATA
1 CTTATCACATATA
65046912 CATATCTTGT
Statistics
Matches: 352, Mismatches: 35, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 40 0.11
47 312 0.89
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:65052271 original size:27 final size:27
Alignment explanation
Indices: 65052241--65052315 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 27
65052231 TATTTTTATG
65052241 CATGTTTTTAATATGTCATAGT-TAGTA
1 CATGTTTTTAATATGTC-TAGTCTAGTA
* * *
65052268 CATGTTATTAATTTGTCTAGTCTATTA
1 CATGTTTTTAATATGTCTAGTCTAGTA
*
65052295 CATATTTTTAATATGTTCTAG
1 CATGTTTTTAATATG-TCTAG
65052316 CTTCAACCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.10
27 31 0.77
28 5 0.12
ACGTcount: A:0.28, C:0.09, G:0.12, T:0.51
Consensus pattern (27 bp):
CATGTTTTTAATATGTCTAGTCTAGTA
Found at i:65055926 original size:43 final size:43
Alignment explanation
Indices: 65055878--65055979 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
65055868 TCTCAGACGT
* * * *
65055878 GGTCTTACATGTAATTCA-ATATTGATGCCT-CTGTCCTAGACAG
1 GGTCTTACACGTAAATCAGATA-TGATG-CTGATGTCCCAGACAG
*
65055921 GGTCTTACACG-AAATCAGATATGATGCTGATGTCCCAGACAT
1 GGTCTTACACGTAAATCAGATATGATGCTGATGTCCCAGACAG
65055963 GGTCTTACACGTAAATC
1 GGTCTTACACGTAAATC
65055980 TCAAATAGAA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
41 2 0.04
42 31 0.61
43 18 0.35
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAGATATGATGCTGATGTCCCAGACAG
Found at i:65059682 original size:24 final size:24
Alignment explanation
Indices: 65059650--65059697 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
65059640 CCCATACCTC
65059650 ATTCTGAAAGCAGTTTTTGGAATG
1 ATTCTGAAAGCAGTTTTTGGAATG
65059674 ATTCTGAAAGCAGTTTTTGGAATG
1 ATTCTGAAAGCAGTTTTTGGAATG
65059698 TCAGAGTCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (24 bp):
ATTCTGAAAGCAGTTTTTGGAATG
Found at i:65065342 original size:15 final size:14
Alignment explanation
Indices: 65065301--65065347 Score: 67
Period size: 15 Copynumber: 3.2 Consensus size: 14
65065291 AAAACATTCC
65065301 TCACTTTTTCTTTT
1 TCACTTTTTCTTTT
*
65065315 TCACTTTCATCTTTT
1 TCACTTT-TTCTTTT
65065330 TCACTTGTTTCTTTT
1 TCACTT-TTTCTTTT
65065345 TCA
1 TCA
65065348 AACTTTCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 7 0.24
15 21 0.72
16 1 0.03
ACGTcount: A:0.11, C:0.23, G:0.02, T:0.64
Consensus pattern (14 bp):
TCACTTTTTCTTTT
Found at i:65068314 original size:31 final size:31
Alignment explanation
Indices: 65068277--65068345 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
65068267 AAAATGAGAG
* * *
65068277 TCAGAATCAGAATTAGGTGACAGAATCAGAA
1 TCAGAATCAGAATCAGGTAACAGAATCAAAA
*
65068308 TCAGAATCAGTATCAGGTAACAGAATCAAAA
1 TCAGAATCAGAATCAGGTAACAGAATCAAAA
*
65068339 CCAGAAT
1 TCAGAAT
65068346 GTGAATGCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (31 bp):
TCAGAATCAGAATCAGGTAACAGAATCAAAA
Found at i:65068573 original size:27 final size:26
Alignment explanation
Indices: 65068525--65068576 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
65068515 GCGAGGCTGC
*
65068525 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
65068551 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
65068577 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:65068843 original size:27 final size:27
Alignment explanation
Indices: 65068813--65068955 Score: 196
Period size: 27 Copynumber: 5.3 Consensus size: 27
65068803 AACATTCTAG
* *
65068813 GGGTAAAATGGTAATTTTATAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATTGA
** *
65068840 GGGTAAAACGGTAATTCTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATTGA
* *
65068867 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATTGA
*
65068894 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATTGA
* *
65068921 GGGTAAAATAGTAATTCTGTCAATTGA
1 GGGTAAAATAGTAATTTTGTAAATTGA
65068948 GGGTAAAA
1 GGGTAAAA
65068956 CTGTAACACC
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTGTAAATTGA
Found at i:65068925 original size:81 final size:81
Alignment explanation
Indices: 65068813--65068961 Score: 235
Period size: 81 Copynumber: 1.8 Consensus size: 81
65068803 AACATTCTAG
* * *
65068813 GGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACAG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAACAG
65068878 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * *
65068894 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTCAATTGAGGGTAAAACTG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAACAG
65068959 TAA
66 TAA
65068962 CACCCCGTAC
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (81 bp):
GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAACAG
TAATTTTGTAAATCGA
Found at i:65070357 original size:40 final size:40
Alignment explanation
Indices: 65070320--65070505 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
65070310 GCTACTCGTT
* *
65070320 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
65070360 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
65070400 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
65070440 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
65070481 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
65070506 CATCATTCGA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 114 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:65075911 original size:40 final size:40
Alignment explanation
Indices: 65075874--65076059 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
65075864 GCTACTCGTT
*
65075874 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
65075914 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
65075954 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
65075994 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
65076035 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
65076060 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:65077761 original size:27 final size:27
Alignment explanation
Indices: 65077729--65078038 Score: 361
Period size: 27 Copynumber: 11.4 Consensus size: 27
65077719 CACAAAAACG
65077729 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* * *
65077756 GTAATTTTGCAAATCGATGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
*
65077783 GTAATTCTGTAAATCGATGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* *
65077810 ATAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* * **
65077837 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATA
* *
65077864 GTAATTTTGTAAATCGAGGGTAAAA-C
1 GTAATTCTGTAAATCGAGGGTAAAATA
* *
65077890 GATAATTTTGTAAATTGAGGGTAAAATA
1 G-TAATTCTGTAAATCGAGGGTAAAATA
* *
65077918 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* * *
65077945 GTAATTCTATCAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* * * * *
65077972 ATAATTCTGTCAATCAATGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATA
*
65077999 GTAATTTTGTAAATCGAGGGTAAAAATA
1 GTAATTCTGTAAATCGAGGGT-AAAATA
*
65078027 GTAATTTTGTAA
1 GTAATTCTGTAA
65078039 TTTGAGAGTA
Statistics
Matches: 247, Mismatches: 33, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 228 0.92
28 18 0.07
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATA
Found at i:65077868 original size:81 final size:81
Alignment explanation
Indices: 65077730--65078038 Score: 402
Period size: 81 Copynumber: 3.8 Consensus size: 81
65077720 ACAAAAACGG
* * * *
65077730 TAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGCAAATCGATGGTAAAATAGTAATTCTGTAA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAA
*
65077795 ATCGATGGTAAAATAA
66 ATCGAGGGTAAAATAA
* * *
65077811 TAATTCTGTAAATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAA
**
65077876 ATCGAGGGTAAAACGA
66 ATCGAGGGTAAAATAA
* * * * * * *
65077892 TAATTTTGTAAATTGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATCA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAA
*
65077957 ATCAAGGGTAAAATAA
66 ATCGAGGGTAAAATAA
* * * * *
65077973 TAATTCTGTCAATCAATGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAAATAGTAATTTTGTA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGT-AAAACAGTAATTCTGTA
65078038 A
65 A
65078039 TTTGAGAGTA
Statistics
Matches: 192, Mismatches: 35, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
81 178 0.93
82 14 0.07
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (81 bp):
TAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAA
ATCGAGGGTAAAATAA
Found at i:65078098 original size:27 final size:26
Alignment explanation
Indices: 65078081--65078143 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 26
65078071 GGGTATTTTA
* *
65078081 GTAATTTTGCAAACTGAGGCTATTTCG
1 GTAATTTTACAAA-TGAGGATATTTCG
*
65078108 GTAATTTTACAAATCGAGGATATTTGG
1 GTAATTTTACAAAT-GAGGATATTTCG
65078135 GTAATTTTA
1 GTAATTTTA
65078144 TAAACCGGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAAATGAGGATATTTCG
Found at i:65080230 original size:31 final size:31
Alignment explanation
Indices: 65080193--65080261 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
65080183 AAAACGAGAG
* * *
65080193 TCAGAATCAGAATTAGGTGACAGAATCAGAA
1 TCAGAATCAGAATCAGGTAACAGAATCAAAA
*
65080224 TCAGAATCAGTATCAGGTAACAGAATCAAAA
1 TCAGAATCAGAATCAGGTAACAGAATCAAAA
*
65080255 CCAGAAT
1 TCAGAAT
65080262 GTGAATGCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (31 bp):
TCAGAATCAGAATCAGGTAACAGAATCAAAA
Found at i:65080763 original size:27 final size:27
Alignment explanation
Indices: 65080733--65081170 Score: 491
Period size: 27 Copynumber: 16.2 Consensus size: 27
65080723 AACATTCTAG
** * **
65080733 GGGTAAAATGGTAATTTTATAAATTAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
65080760 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
65080787 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
65080814 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
65080841 GGTTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
65080868 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
65080895 GGGTAAAATAGTAATTTTGCAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
65080922 TGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
65080949 TGGTAAAATAATAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
65080976 GGGTAAAACAGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
65081003 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
65081030 GGGTAAAACGGTAATTCTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
65081057 GGGTAAAACAGTAATTCTATCAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * **
65081084 GGGTAAAACAATAATTCTT-TCAATAAA
1 GGGTAAAACAGTAATT-TTGTAAATCGA
*
65081111 GGGTAAAACAGTAATTTTTTTAAATCGA
1 GGGTAAAACAGTAA-TTTTGTAAATCGA
* *
65081139 GGGTAAAATAGTAATTTTGTAATTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
65081166 GGGTA
1 GGGTA
65081171 CTTTAATAGT
Statistics
Matches: 361, Mismatches: 47, Indels: 6
0.87 0.11 0.01
Matches are distributed among these distances:
27 340 0.94
28 21 0.06
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:65080848 original size:81 final size:81
Alignment explanation
Indices: 65080733--65081170 Score: 543
Period size: 81 Copynumber: 5.4 Consensus size: 81
65080723 AACATTCTAG
* ** * *
65080733 GGGTAAAATGGTAATTTTATAAATTAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
*
65080798 TAATTTTGTAAATCGA
66 TAATTCTGTAAATCGA
* * * * *
65080814 GGGTAAAATAGTAATTTTGTAAATCGAGGTTAAAATAGTAATTCTGTCAATCGAGGGTAAAACGG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
65080879 TAATTCTGTAAATCGA
66 TAATTCTGTAAATCGA
** * * * * *
65080895 GGGTAAAATAGTAATTTTGCAAATCGATGGTAAAATAGTAATTCTGTAAATCGATGGTAAAATAA
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
65080960 TAATTCTGTAAATCGA
66 TAATTCTGTAAATCGA
* * * *
65080976 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
*
65081041 TAATTCTGTAAATTGA
66 TAATTCTGTAAATCGA
* * * * * * * **
65081057 GGGTAAAACAGTAATTCTATCAATCAAGGGTAAAACAATAATTCTTTCAATAAAGGGTAAAACAG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
* *
65081122 TAATTTTTTTAAATCGA
66 TAA-TTCTGTAAATCGA
* *
65081139 GGGTAAAATAGTAATTTTGTAATTCGAGGGTA
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTA
65081171 CTTTAATAGT
Statistics
Matches: 305, Mismatches: 51, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
81 269 0.88
82 36 0.12
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (81 bp):
GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
TAATTCTGTAAATCGA
Found at i:65081248 original size:27 final size:27
Alignment explanation
Indices: 65081148--65081265 Score: 96
Period size: 27 Copynumber: 4.4 Consensus size: 27
65081138 AGGGTAAAAT
** *
65081148 AGTAATTTTGTAATTCGAGGGTACTTT-
1 AGTAATTTTACAAATCGAGGGTA-TTTC
* * * * *
65081175 AATAGTTTTACAAGTTGAGGGTATTCC
1 AGTAATTTTACAAATCGAGGGTATTTC
*
65081202 AGTAATTTTGCAAA-CTGAGGGTATTTC
1 AGTAATTTTACAAATC-GAGGGTATTTC
* *
65081229 AGTAATTTTACAAATCGAGGATATTTG
1 AGTAATTTTACAAATCGAGGGTATTTC
*
65081256 GGTAATTTTA
1 AGTAATTTTA
65081266 TAAACCGGGG
Statistics
Matches: 71, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
26 2 0.03
27 68 0.96
28 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AGTAATTTTACAAATCGAGGGTATTTC
Found at i:65083347 original size:31 final size:31
Alignment explanation
Indices: 65083310--65083378 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
65083300 AAAACGAGAG
* * *
65083310 TCAGAATCAGAATTAGGTGACAGAATCAGAA
1 TCAGAATCAGAATCAGGTAACAGAATCAAAA
*
65083341 TCAGAATCAGTATCAGGTAACAGAATCAAAA
1 TCAGAATCAGAATCAGGTAACAGAATCAAAA
*
65083372 CCAGAAT
1 TCAGAAT
65083379 GTGAATGCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (31 bp):
TCAGAATCAGAATCAGGTAACAGAATCAAAA
Found at i:65083880 original size:27 final size:27
Alignment explanation
Indices: 65083850--65084449 Score: 655
Period size: 27 Copynumber: 22.2 Consensus size: 27
65083840 AACATTCTAG
** * **
65083850 GGGTAAAATGGTAATTTTATAAATTAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
65083877 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
65083904 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
65083931 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
65083958 GGTTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
65083985 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
65084012 GGGTAAAATAGTAATTTTGCAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
65084039 TGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
65084066 TGGTAAAATAATAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
65084093 GGGTAAAACAGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
65084120 GGGTAAAACGGTAATTTGGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
65084147 GGGTAAAACGGTAATTCTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
65084174 GGGTAAAACAGTAATTCTATCAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * **
65084201 GGGTAAAACAATAATTCTT-TCAATAAA
1 GGGTAAAACAGTAATT-TTGTAAATCGA
*
65084228 GGGTAAAACAGTAATTTTTTTAAATCGA
1 GGGTAAAACAGTAA-TTTTGTAAATCGA
* *
65084256 GGGTAAAATAGTAATTTTGTAATTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
65084283 GGGTAAAAC-GATAATTTTGTAAATTGA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
* * *
65084310 GGGCAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
65084337 GGGTAAAACAGTAATTCTATCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
65084364 GGGTAAAAGAGTAATTCTGTCACTCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
65084391 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
65084418 GGGTAAAACAGTAACTTTGTAATTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
65084445 GGGTA
1 GGGTA
65084450 CTTTGATAAT
Statistics
Matches: 496, Mismatches: 72, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 473 0.95
28 22 0.04
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:65084485 original size:54 final size:53
Alignment explanation
Indices: 65084427--65084571 Score: 150
Period size: 54 Copynumber: 2.7 Consensus size: 53
65084417 AGGGTAAAAC
* * * *
65084427 AGTAACTTTGTAATTCGAGGGTACTTTGATAATTTTACAAGTCGATGG-TATTTT
1 AGTAATTTTGTAA-TCGAGGGTACTTTGGTAATTTTACAAATCGA-GGATATTTG
* *
65084481 AGTAATTTTGCAAACTGAGGGTA-TTTCGGTAATTTTACAAATCGAGGATATTTG
1 AGTAATTTTGTAATC-GAGGGTACTTT-GGTAATTTTACAAATCGAGGATATTTG
* * *
65084535 GGTAATTTTATAAATCGGGGGTACTTTGGTAATTTTA
1 AGTAATTTTGT-AATCGAGGGTACTTTGGTAATTTTA
65084572 TAATTGGGGG
Statistics
Matches: 75, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
53 6 0.08
54 63 0.84
55 6 0.08
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (53 bp):
AGTAATTTTGTAATCGAGGGTACTTTGGTAATTTTACAAATCGAGGATATTTG
Found at i:65084574 original size:27 final size:26
Alignment explanation
Indices: 65084441--65084571 Score: 129
Period size: 27 Copynumber: 4.8 Consensus size: 26
65084431 ACTTTGTAAT
* *
65084441 TCGAGGGTACTTTGATAATTTTACAAG
1 TCGAGGGTA-TTTGGTAATTTTACAAA
* * *
65084468 TCGATGGTATTTTAGTAATTTTGCAAA
1 TCGAGGGTA-TTTGGTAATTTTACAAA
65084495 -CTGAGGGTATTTCGGTAATTTTACAAA
1 TC-GAGGGTATTT-GGTAATTTTACAAA
* *
65084522 TCGAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTT-GGTAATTTTACAAA
*
65084549 TCGGGGGTACTTTGGTAATTTTA
1 TCGAGGGTA-TTTGGTAATTTTA
65084572 TAATTGGGGG
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
26 4 0.05
27 78 0.91
28 4 0.05
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.40
Consensus pattern (26 bp):
TCGAGGGTATTTGGTAATTTTACAAA
Found at i:65084592 original size:26 final size:26
Alignment explanation
Indices: 65084441--65084595 Score: 107
Period size: 27 Copynumber: 5.8 Consensus size: 26
65084431 ACTTTGTAAT
* *
65084441 TCGAGGGTACTTT-GATAATTTTACAA
1 TCGAGGGTA-TTTCGGTAATTTTATAA
* ** **
65084467 GTCGATGGTATTTTAGTAATTTTGCAA
1 -TCGAGGGTATTTCGGTAATTTTATAA
* *
65084494 ACTGAGGGTATTTCGGTAATTTTACAAA
1 TC-GAGGGTATTTCGGTAATTTTA-TAA
* *
65084522 TCGAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTTCGGTAATTTTAT-AA
*
65084549 TCGGGGGTACTTT-GGTAATTTTATAA
1 TCGAGGGTA-TTTCGGTAATTTTATAA
* * *
65084575 TTGGGGGTATTTCAGTAATTT
1 TCGAGGGTATTTCGGTAATTT
65084596 GGTAGACTAA
Statistics
Matches: 104, Mismatches: 18, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
25 3 0.03
26 21 0.20
27 74 0.71
28 6 0.06
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (26 bp):
TCGAGGGTATTTCGGTAATTTTATAA
Found at i:65086601 original size:6 final size:6
Alignment explanation
Indices: 65086571--65086664 Score: 50
Period size: 6 Copynumber: 15.3 Consensus size: 6
65086561 AAGAAACATT
* * * *
65086571 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
65086620 ATCAGA ATCAAA ATCAGT ATCAGGTA A-AAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
65086665 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 16, Indels: 16
0.67 0.17 0.17
Matches are distributed among these distances:
5 4 0.06
6 53 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:65086629 original size:31 final size:31
Alignment explanation
Indices: 65086592--65086664 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
65086582 AATCAAAATG
* * *
65086592 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAAAAGAATC
* *
65086623 AGAATCAAAATCAGTATCAGGTAAAAGAATC
1 AGAATCAGAATCAGAATCAGGTAAAAGAATC
*
65086654 AAAATCAGAAT
1 AGAATCAGAAT
65086665 GTGAATGCAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAAAAGAATC
Found at i:65086824 original size:33 final size:32
Alignment explanation
Indices: 65086765--65086828 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
65086755 ACGAAGTCAC
* *
65086765 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
65086797 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATATAGATAT-TGTGGCGAAGCCACCAGA
65086829 TTGCAGCGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:65086892 original size:27 final size:26
Alignment explanation
Indices: 65086844--65086895 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
65086834 GCGAGGCTGC
*
65086844 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
65086870 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
65086896 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:65087163 original size:27 final size:27
Alignment explanation
Indices: 65087132--65087514 Score: 437
Period size: 27 Copynumber: 14.2 Consensus size: 27
65087122 AAGACCCTAG
** * *
65087132 GGGTAAAATGGTAATTTTATAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* ** *
65087159 AGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
65087186 GGGTAAAACAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
65087213 GGGTAAAATAGTAATTCTGTCACTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
65087240 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
65087267 GGGAAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
65087294 AGGTAAAACAGTAATTCTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
65087321 GGGTAAAACAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
65087348 GGGTAAAATAGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
65087375 GGGTAAAAC-GATAATTTTGTAAATCGA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
*
65087402 GGGTAAAAC-GATAATTTTGTAAATTGA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
* *
65087429 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
65087456 GCGCAAAACAGTAATTCTATCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
65087483 GGGTAAAACAGTAATTTTTTAATTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
65087510 GGGTA
1 GGGTA
65087515 CTTTGATATT
Statistics
Matches: 305, Mismatches: 49, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 303 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:65087548 original size:53 final size:54
Alignment explanation
Indices: 65087477--65087659 Score: 162
Period size: 54 Copynumber: 3.4 Consensus size: 54
65087467 TAATTCTATC
*** *
65087477 AATCGAGGGTAAAACAGTAATTTTTTAATTCGAGGGTACTTTGAT-ATTTTACA
1 AATCGAGGGTATTTCAGTAATTTTATAATTCGAGGGTACTTTGATAATTTTACA
*
65087530 AGTCGAGGGTATTTCAGTAATTTTGCA-AATT-GAGGGTA-TTTCGATAATTTTACA
1 AATCGAGGGTATTTCAGTAATTTT--ATAATTCGAGGGTACTTT-GATAATTTTACA
* ** ** * *
65087584 AATCGAGGATATTTGGGTAATTTTATAAACCGGGGGTACTTTTG-TAATTTTATA
1 AATCGAGGGTATTTCAGTAATTTTATAATTCGAGGGTAC-TTTGATAATTTTACA
* *
65087638 ACT-GGGGGTATTTCAGTAATTT
1 AATCGAGGGTATTTCAGTAATTT
65087660 GGTAAACTAA
Statistics
Matches: 104, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
52 4 0.04
53 47 0.45
54 49 0.47
55 1 0.01
56 3 0.03
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (54 bp):
AATCGAGGGTATTTCAGTAATTTTATAATTCGAGGGTACTTTGATAATTTTACA
Found at i:65087564 original size:27 final size:26
Alignment explanation
Indices: 65087506--65087659 Score: 116
Period size: 27 Copynumber: 5.8 Consensus size: 26
65087496 ATTTTTTAAT
*
65087506 TCGAGGGTACTTT-G-ATATTTTACAAG
1 TCGAGGGTA-TTTCGTA-ATTTTACAAA
*
65087532 TCGAGGGTATTTCAGTAATTTTGCAAA
1 TCGAGGGTATTTC-GTAATTTTACAAA
*
65087559 TTGAGGGTATTTCGATAATTTTACAAA
1 TCGAGGGTATTTCG-TAATTTTACAAA
* * *
65087586 TCGAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTT-CGTAATTTTACAAA
* * * * *
65087613 CCGGGGGTACTTTTGTAATTTTATAAC
1 TCGAGGGTA-TTTCGTAATTTTACAAA
*
65087640 T-GGGGGTATTTCAGTAATTT
1 TCGAGGGTATTTC-GTAATTT
65087660 GGTAAACTAA
Statistics
Matches: 106, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
25 6 0.06
26 24 0.23
27 71 0.67
28 5 0.05
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (26 bp):
TCGAGGGTATTTCGTAATTTTACAAA
Found at i:65090608 original size:40 final size:40
Alignment explanation
Indices: 65090563--65090672 Score: 114
Period size: 40 Copynumber: 2.7 Consensus size: 40
65090553 ATTATGTTTG
*
65090563 GCACTTAGTGTGTGTA-TCGAGATAGCTTCGGCTATATAAA
1 GCACTTAGTGTGTG-AGTCGAAATAGCTTCGGCTATATAAA
* * **
65090603 GCACTTAGTGTGTGAGTCTAAATAGCTTTGGCTATATATG
1 GCACTTAGTGTGTGAGTCGAAATAGCTTCGGCTATATAAA
* * * *
65090643 GCACATAGTATGTGAGACTGAGATAGCTTC
1 GCACTTAGTGTGTGAGTC-GAAATAGCTTC
65090673 AACTATGAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.02
40 48 0.84
41 8 0.14
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGTGAGTCGAAATAGCTTCGGCTATATAAA
Found at i:65092561 original size:27 final size:27
Alignment explanation
Indices: 65092523--65092992 Score: 516
Period size: 27 Copynumber: 17.5 Consensus size: 27
65092513 TAATAAAAAG
* *
65092523 AAATTACTGAAATACCCTCAATTTATA
1 AAATTACCGAAATACCCTCAATTTGTA
* * * *
65092550 AAATTATCGAAATAACCTCGA-TTGTG
1 AAATTACCGAAATACCCTCAATTTGTA
* *
65092576 AAATTATCGAAATACCC-CTGATTTGTA
1 AAATTACCGAAATACCCTC-AATTTGTA
* * * *
65092603 AAATTATCAAAATACCCCCAATTTGTG
1 AAATTACCGAAATACCCTCAATTTGTA
* * **
65092630 AAATTACCGAAACACTCTTGATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* * *
65092657 AAATTACTGAAACA-CCTCGATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* *
65092683 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
*
65092710 AAATTACCGAAATACCC-CAATTTGTG
1 AAATTACCGAAATACCCTCAATTTGTA
* *
65092736 AAATTACCAAAACACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* * *
65092763 AAATTACTGAAATACCCCCAATTTGTG
1 AAATTACCGAAATACCCTCAATTTGTA
* *
65092790 AAATTACCAAAACACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* * *
65092817 AAATTACCAAAATACCATCGATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* * *
65092844 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* * *
65092871 AAATTACTGAAATACCTTTAATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
*
65092898 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
*
65092925 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* *
65092952 AAATTACCGAAACACCTTCAATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
*
65092979 AAATTATCGAAATA
1 AAATTACCGAAATA
65092993 ATCTTGTAGT
Statistics
Matches: 373, Mismatches: 65, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
25 1 0.00
26 64 0.17
27 307 0.82
28 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCAATTTGTA
Found at i:65093027 original size:27 final size:27
Alignment explanation
Indices: 65092975--65093036 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
65092965 ACCTTCAATT
* * *
65092975 TGTAAAATTATCGAAATAATCTTGTAG
1 TGTAAAATTACCGAAATAACCCTGTAG
*
65093002 TGTAAAATTACCGAAATACCCCTGTAG
1 TGTAAAATTACCGAAATAACCCTGTAG
*
65093029 GGTAAAAT
1 TGTAAAAT
65093037 GACTATTTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACCGAAATAACCCTGTAG
Found at i:65096330 original size:50 final size:49
Alignment explanation
Indices: 65096162--65096386 Score: 306
Period size: 49 Copynumber: 4.5 Consensus size: 49
65096152 CTGGTACGCA
* * *
65096162 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
65096211 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
65096260 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * * *
65096310 TAGTAGCCTGCACTTCGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
65096361 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
65096387 TGCGACCTCA
Statistics
Matches: 156, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 79 0.51
50 42 0.27
51 34 0.22
52 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:65096394 original size:101 final size:99
Alignment explanation
Indices: 65096149--65096394 Score: 341
Period size: 101 Copynumber: 2.5 Consensus size: 99
65096139 TAGCCAAAGC
* * ** *
65096149 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-AATTATCCGGTACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACGTA
65096213 GTAGCCTGCACTTAGTACTACACACGTGACCAAT
66 GTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * * *
65096247 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACGTA
* *
65096312 GTAGCCTGCACTTCGTACTACACACGTGATCACAGT
66 GTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* *
65096348 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
65096395 CACAATAGAT
Statistics
Matches: 127, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 40 0.31
99 42 0.33
100 1 0.01
101 44 0.35
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (99 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACGTA
GTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:65098618 original size:52 final size:50
Alignment explanation
Indices: 65098562--65098674 Score: 163
Period size: 50 Copynumber: 2.2 Consensus size: 50
65098552 ATGAGTTTCT
* * *
65098562 TAATGGATGACTTAATTTAATGATGCAAACTTTAACTAACATGGGAGTTACA
1 TAATGCATGACATAATTT-ATGATGCAAAC-TTAACTAACATGAGAGTTACA
*
65098614 TAATGCATGCCATAATTTATGATGCAAACTTAACTAACATGAGAGTTACA
1 TAATGCATGACATAATTTATGATGCAAACTTAACTAACATGAGAGTTACA
*
65098664 TAATGCTTGAC
1 TAATGCATGAC
65098675 TTTTTTAAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 29 0.53
51 11 0.20
52 15 0.27
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (50 bp):
TAATGCATGACATAATTTATGATGCAAACTTAACTAACATGAGAGTTACA
Found at i:65101269 original size:22 final size:20
Alignment explanation
Indices: 65101244--65101294 Score: 50
Period size: 23 Copynumber: 2.4 Consensus size: 20
65101234 TTTCTTTCTT
65101244 TCTTTTTATTATACTTTTGAA
1 TCTTTTTATTATA-TTTTGAA
*
65101265 CTCTTTCTTTTTTATATTTTGAA
1 -TC-TT-TTTATTATATTTTGAA
65101288 T-TTTTTA
1 TCTTTTTA
65101295 CACAAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
19 3 0.12
20 2 0.08
22 3 0.12
23 9 0.36
24 8 0.32
ACGTcount: A:0.20, C:0.10, G:0.04, T:0.67
Consensus pattern (20 bp):
TCTTTTTATTATATTTTGAA
Found at i:65101279 original size:24 final size:25
Alignment explanation
Indices: 65101240--65101287 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 25
65101230 TTTCTTTCTT
65101240 TCTTTCTTTTTATTATACTTTTGAAC
1 TCTTTCTTTTTATTATA-TTTTGAAC
65101266 TCTTTC-TTTT-TTATATTTTGAA
1 TCTTTCTTTTTATTATATTTTGAA
65101288 TTTTTTACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 7 0.32
24 5 0.23
25 4 0.18
26 6 0.27
ACGTcount: A:0.19, C:0.12, G:0.04, T:0.65
Consensus pattern (25 bp):
TCTTTCTTTTTATTATATTTTGAAC
Found at i:65104371 original size:38 final size:40
Alignment explanation
Indices: 65104289--65104372 Score: 109
Period size: 38 Copynumber: 2.1 Consensus size: 40
65104279 ACTAAGACAG
65104289 ATTAAAAACGCCTACTTAATATGTTCTAAACTAGGACATA
1 ATTAAAAACGCCTACTTAATATGTTCTAAACTAGGACATA
* * * * *
65104329 ATTAAAAAC-CTTAGTTAATATGTTC-AGATTATGACATA
1 ATTAAAAACGCCTACTTAATATGTTCTAAACTAGGACATA
65104367 ATTAAA
1 ATTAAA
65104373 CTCATATTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 16 0.41
39 14 0.36
40 9 0.23
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (40 bp):
ATTAAAAACGCCTACTTAATATGTTCTAAACTAGGACATA
Found at i:65106854 original size:20 final size:20
Alignment explanation
Indices: 65106806--65106847 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
65106796 GATTACATTT
*
65106806 ATAA-AAAATGAATTTTATA
1 ATAACAAAATAAATTTTATA
*
65106825 ATAACCAAATAAATTTTATA
1 ATAACAAAATAAATTTTATA
65106845 ATA
1 ATA
65106848 TTAAAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (20 bp):
ATAACAAAATAAATTTTATA
Found at i:65111676 original size:38 final size:39
Alignment explanation
Indices: 65111585--65111697 Score: 165
Period size: 38 Copynumber: 2.9 Consensus size: 39
65111575 TGAAAACAAG
*
65111585 TATTAAAGATGTTCAAACTATGACATAATTAAAGACCTA
1 TATTAATGATGTTCAAACTATGACATAATTAAAGACCTA
* * *
65111624 TATTAATGATGTTCAGAGTATGACATAATTAAA-ACTTA
1 TATTAATGATGTTCAAACTATGACATAATTAAAGACCTA
* *
65111662 TATTAATGACGTTCAAATTATGACATAATTAAAGAC
1 TATTAATGATGTTCAAACTATGACATAATTAAAGAC
65111698 TCAAACTATT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 34 0.52
39 32 0.48
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.34
Consensus pattern (39 bp):
TATTAATGATGTTCAAACTATGACATAATTAAAGACCTA
Found at i:65113779 original size:10 final size:10
Alignment explanation
Indices: 65113764--65113793 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
65113754 TAAGTTCTTG
65113764 AAAAAAATTT
1 AAAAAAATTT
*
65113774 AAAAAAATTC
1 AAAAAAATTT
65113784 AAAAAAATTT
1 AAAAAAATTT
65113794 GTGCACAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAAAAATTT
Found at i:65121265 original size:41 final size:45
Alignment explanation
Indices: 65121220--65121380 Score: 159
Period size: 45 Copynumber: 3.7 Consensus size: 45
65121210 TCCCAAACGG
* * *
65121220 GGTCTCACACG-AATCA-A-ATA-CGATGCCGATGTCCCAGACAT
1 GGTCTCACACGTAACCACATATATCGATGCCAACGTCCCAGACAT
* *
65121261 GGTCTTACACGTAACCACATATATTGATGCCAACGTCCCAGACAT
1 GGTCTCACACGTAACCACATATATCGATGCCAACGTCCCAGACAT
* * * * * *
65121306 GGTCTTACATGAAAACACATATATCGATGCCAACATCCCAGACGT
1 GGTCTCACACGTAACCACATATATCGATGCCAACGTCCCAGACAT
* * * *
65121351 GGTCTTACACGAAAACACATATATTGATGC
1 GGTCTCACACGTAACCACATATATCGATGC
65121381 ATTCGTCCCA
Statistics
Matches: 103, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
41 10 0.10
42 4 0.04
43 1 0.01
44 3 0.03
45 85 0.83
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.23
Consensus pattern (45 bp):
GGTCTCACACGTAACCACATATATCGATGCCAACGTCCCAGACAT
Found at i:65121299 original size:45 final size:45
Alignment explanation
Indices: 65121241--65121417 Score: 230
Period size: 45 Copynumber: 3.9 Consensus size: 45
65121231 AATCAAATAC
* * * *
65121241 GATGCCGATGTCCCAGACATGGTCTTACACGTAACCACATATATT
1 GATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATT
* *
65121286 GATGCCAACGTCCCAGACATGGTCTTACATGAAAACACATATATC
1 GATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATT
* *
65121331 GATGCCAACATCCCAGACGTGGTCTTACACGAAAACACATATATT
1 GATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATT
* ** *
65121376 GATG-CATTCGTCCCAGATGTGGTATTACACGAAAACACATAT
1 GATGCCA-ACGTCCCAGACATGGTCTTACACGAAAACACATAT
65121418 CGAATCCTAC
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
44 2 0.02
45 115 0.98
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (45 bp):
GATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATT
Found at i:65123617 original size:13 final size:13
Alignment explanation
Indices: 65123599--65123624 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65123589 ATATTATAAT
65123599 TATTTTATGTTAA
1 TATTTTATGTTAA
65123612 TATTTTATGTTAA
1 TATTTTATGTTAA
65123625 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:65125342 original size:40 final size:40
Alignment explanation
Indices: 65125139--65125318 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
65125129 GGACTAAGAT
*
65125139 CCGAAGGCATTCGTGC-GGTTATTATAACCGGACTAAGAT-
1 CCGAAGGCATTCGTGCTGGTTATTATAACCGGGCTAAG-TC
* *
65125178 CCGAAGGCAATT-GTGCTAGTTATTATAACCGGGTTAAGTC
1 CCGAAGGC-ATTCGTGCTGGTTATTATAACCGGGCTAAGTC
* *
65125218 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTC
1 CCGAAGGCATTCGTGCTGGTTATTATAACCGGGCTAAGTC
*
65125258 CCGAAGGCATTCGTGCAGGTTATTATAACCGGGCTAAGTC
1 CCGAAGGCATTCGTGCTGGTTATTATAACCGGGCTAAGTC
65125298 CCGAAGGCATTCGTGCTGGTT
1 CCGAAGGCATTCGTGCTGGTT
65125319 GTTACATCCG
Statistics
Matches: 129, Mismatches: 8, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
39 16 0.12
40 113 0.88
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCTGGTTATTATAACCGGGCTAAGTC
Found at i:65125342 original size:80 final size:79
Alignment explanation
Indices: 65125139--65125342 Score: 268
Period size: 80 Copynumber: 2.6 Consensus size: 79
65125129 GGACTAAGAT
*
65125139 CCGAAGGCATTCGTGCGGTTATTATAACCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATTAT
1 CCGAAGGCATTCGTGCGGTTATTATAACCGGACTAAGTTCCGAAGGCAATTGTGCTAGTTATTAT
*
65125204 AACCGGGTTAAGTC
66 AACCGGGCTAAGTC
** *
65125218 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC-ATTCGTGC-AGGTTAT
1 CCGAAGGCATTCGTGC-GGTTATTATAACCGGACTAAGTTCCGAAGGCAATT-GTGCTA-GTTAT
65125281 TATAACCGGGCTAAGTC
63 TATAACCGGGCTAAGTC
* * * * *
65125298 CCGAAGGCATTCGTGCTGGTTGTTACATCCGAACCAAGTTCCGAA
1 CCGAAGGCATTCGTGC-GGTTATTATAACCGGACTAAGTTCCGAA
65125343 AGTAGTCATG
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 20 0.19
80 88 0.81
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGGTTATTATAACCGGACTAAGTTCCGAAGGCAATTGTGCTAGTTATTAT
AACCGGGCTAAGTC
Found at i:65133541 original size:13 final size:13
Alignment explanation
Indices: 65133523--65133548 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65133513 ATATTATAAT
65133523 TATTTTATGTTAA
1 TATTTTATGTTAA
65133536 TATTTTATGTTAA
1 TATTTTATGTTAA
65133549 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:65135115 original size:40 final size:39
Alignment explanation
Indices: 65135060--65135272 Score: 196
Period size: 40 Copynumber: 5.3 Consensus size: 39
65135050 TGATATCCGG
65135060 ACTAAGATCCGAAGGCATTCGTGCGGGTTATTATAACCGA
1 ACTAAG-TCCGAAGGCATTCGTGCGGGTTATTATAACCGA
** *
65135100 ACTAAGATCCGAAGGCAATT-GTGCTAGTTATTATAACCGG
1 ACTAAG-TCCGAAGGC-ATTCGTGCGGGTTATTATAACCGA
** *
65135140 GTTAAGTCCCGAAGGTATTCGTGCGGGTTATTATAACC-A
1 ACTAAGT-CCGAAGGCATTCGTGCGGGTTATTATAACCGA
** * *
65135179 GGTTAAGTCCTGAAGGCATTTGTGCAGGTTATTATAACCGA
1 -ACTAAGTCC-GAAGGCATTCGTGCGGGTTATTATAACCGA
* * * * *
65135220 GCTAAGTCCCGAAGGCATTCGTGCTGGTTGTTACATCCGA
1 ACTAAGT-CCGAAGGCATTCGTGCGGGTTATTATAACCGA
*
65135260 ACCAAGTTCCGAA
1 ACTAAG-TCCGAA
65135273 AGTAGTCATG
Statistics
Matches: 145, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
39 6 0.04
40 132 0.91
41 7 0.05
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (39 bp):
ACTAAGTCCGAAGGCATTCGTGCGGGTTATTATAACCGA
Found at i:65135202 original size:80 final size:80
Alignment explanation
Indices: 65135068--65135272 Score: 254
Period size: 80 Copynumber: 2.6 Consensus size: 80
65135058 GGACTAAGAT
65135068 CCGAAGGCATTCGTGCGGGTTATTATAACCGAACTAAGATCCGAAGGCAATTGTGCTA-GTTATT
1 CCGAAGGCATTCGTGCGGGTTATTATAACCGAACTAAGATCCGAAGGCAATTGTGC-AGGTTATT
* *
65135132 ATAACCGGGTTAAGTC
65 ATAACCGAGCTAAGTC
* ** *
65135148 CCGAAGGTATTCGTGCGGGTTATTATAACC-AGGTTAAG-TCCTGAAGGCATTTGTGCAGGTTAT
1 CCGAAGGCATTCGTGCGGGTTATTATAACCGA-ACTAAGATCC-GAAGGCAATTGTGCAGGTTAT
65135211 TATAACCGAGCTAAGTC
64 TATAACCGAGCTAAGTC
* * * * * *
65135228 CCGAAGGCATTCGTGCTGGTTGTTACATCCGAACCAAGTTCCGAA
1 CCGAAGGCATTCGTGCGGGTTATTATAACCGAACTAAGATCCGAA
65135273 AGTAGTCATG
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
79 5 0.05
80 97 0.92
81 4 0.04
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGGGTTATTATAACCGAACTAAGATCCGAAGGCAATTGTGCAGGTTATTA
TAACCGAGCTAAGTC
Found at i:65137235 original size:19 final size:19
Alignment explanation
Indices: 65137213--65137251 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
65137203 AATGGGCCAC
65137213 GTGGGCCAAAATGGG-TCGT
1 GTGGGCC-AAATGGGCTCGT
*
65137232 GTGGGCCCAATGGGCTCGT
1 GTGGGCCAAATGGGCTCGT
65137251 G
1 G
65137252 GGCCCTACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.15, C:0.21, G:0.44, T:0.21
Consensus pattern (19 bp):
GTGGGCCAAATGGGCTCGT
Found at i:65137447 original size:27 final size:27
Alignment explanation
Indices: 65137415--65137613 Score: 245
Period size: 27 Copynumber: 7.4 Consensus size: 27
65137405 CCCTAAAATA
* *
65137415 GGTAAAATAACCGTAATAACCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
65137442 GGTAAAATGATCGTAATACCACTTTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
65137469 GGTAAAATGACGGTAATGCCACTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
65137496 GGTAAAATGACCGTAATACCCCTGTAA
1 GGTAAAATGACCGTAATACCCCTGTAG
65137523 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
65137550 GGTAAAATGACTGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * * * *
65137577 GATAAAATAAACATAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
65137604 GGTAAAATGA
1 GGTAAAATGA
65137614 TGATTATACC
Statistics
Matches: 145, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:65137551 original size:81 final size:81
Alignment explanation
Indices: 65137415--65137613 Score: 281
Period size: 81 Copynumber: 2.5 Consensus size: 81
65137405 CCCTAAAATA
* * * *
65137415 GGTAAAATAACCGTAATAACCCTGTAGGGTAAAATGATCGTAATACCACTTTAGGGTAAAATGAC
1 GGTAAAATAACCGTAATACCCCTGTAAGGTAAAATGACCGTAATACCACTGTAGGGTAAAATGAC
*
65137480 GGTAATGCCACTGTAG
66 GGTAATGCCACTATAG
* *
65137496 GGTAAAATGACCGTAATACCCCTGTAAGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGAC
1 GGTAAAATAACCGTAATACCCCTGTAAGGTAAAATGACCGTAATACCACTGTAGGGTAAAATGAC
* *
65137561 TGTAATGCCCCTATAG
66 GGTAATGCCACTATAG
* * * *
65137577 GATAAAATAAACATAATACCCCTGTATGGTAAAATGA
1 GGTAAAATAACCGTAATACCCCTGTAAGGTAAAATGA
65137614 TGATTATACC
Statistics
Matches: 104, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 104 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (81 bp):
GGTAAAATAACCGTAATACCCCTGTAAGGTAAAATGACCGTAATACCACTGTAGGGTAAAATGAC
GGTAATGCCACTATAG
Found at i:65139053 original size:14 final size:15
Alignment explanation
Indices: 65139034--65139062 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
65139024 TCACAAAAAG
65139034 TTCACACAT-ATAAA
1 TTCACACATAATAAA
65139048 TTCACACATAATAAA
1 TTCACACATAATAAA
65139063 CACAATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:65143990 original size:10 final size:8
Alignment explanation
Indices: 65143964--65143990 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
65143954 ACAATTCTGA
65143964 ACATTCAC
1 ACATTCAC
65143972 ACATTCAC
1 ACATTCAC
65143980 ACATTCAC
1 ACATTCAC
65143988 ACA
1 ACA
65143991 AGTCATATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (8 bp):
ACATTCAC
Found at i:65145883 original size:45 final size:45
Alignment explanation
Indices: 65145781--65146003 Score: 226
Period size: 45 Copynumber: 5.0 Consensus size: 45
65145771 ATGCTATCTC
* *
65145781 ATATCGATGCCACTGTCCCA-AGCA-GTGTCTTACACG-AATCA-A-
1 ATATCGATGCCAATGTCCCAGA-CATG-GTCTTACACGAAAACACAT
* * * *
65145823 ATA-CGATGCCGATGTCCCAGACATGGTTTTACACGTAACCACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAAACACAT
* *
65145867 ATATCGATGCCAATGTCCCAGACGTGGTCTTAGACGAAAACACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAAACACAT
* * * *
65145912 ATATCGATGCCAACGTCCTAAACGTGGTCTTACACGAAAACACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAAACACAT
* * * *
65145957 ATATCGATGCC-ATCGTCCTAGACAAGGTATTACACAAAAACACAT
1 ATATCGATGCCAAT-GTCCCAGACATGGTCTTACACGAAAACACAT
65146002 AT
1 AT
65146004 CAAAATCCTA
Statistics
Matches: 154, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
41 25 0.16
42 9 0.06
43 1 0.01
44 4 0.03
45 115 0.75
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (45 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAAACACAT
Found at i:65149893 original size:23 final size:23
Alignment explanation
Indices: 65149841--65149954 Score: 104
Period size: 23 Copynumber: 4.9 Consensus size: 23
65149831 TACCTATATA
* *
65149841 TCAGCTTGTAAGAGCTTACTATTT
1 TCAGCTCGTAAGAGCTTACT-GTT
**
65149865 TCAGCTCGTTGGAGCTTACTGTT
1 TCAGCTCGTAAGAGCTTACTGTT
* *
65149888 TCAGCTCATAAGAGCTTAATGTTT
1 TCAGCTCGTAAGAGCTTACTG-TT
* * *
65149912 TCAGCTCGTCACAGCTTACCGTT
1 TCAGCTCGTAAGAGCTTACTGTT
*
65149935 TCAGCTC-AATAGAGCTTACT
1 TCAGCTCGTA-AGAGCTTACT
65149955 ATCCATCAGC
Statistics
Matches: 71, Mismatches: 17, Indels: 5
0.76 0.18 0.05
Matches are distributed among these distances:
23 36 0.51
24 35 0.49
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (23 bp):
TCAGCTCGTAAGAGCTTACTGTT
Found at i:65149904 original size:47 final size:47
Alignment explanation
Indices: 65149849--65149956 Score: 146
Period size: 47 Copynumber: 2.3 Consensus size: 47
65149839 TATCAGCTTG
*** *
65149849 TAAGAGCTTACTATTTTCAGCTCGTTGGAGCTTACTGTTTCAGCTCA
1 TAAGAGCTTACTATTTTCAGCTCGTCACAGCTTACCGTTTCAGCTCA
* *
65149896 TAAGAGCTTAATGTTTTCAGCTCGTCACAGCTTACCGTTTCAGCTCA
1 TAAGAGCTTACTATTTTCAGCTCGTCACAGCTTACCGTTTCAGCTCA
65149943 -ATAGAGCTTACTAT
1 TA-AGAGCTTACTAT
65149957 CCATCAGCTT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 1 0.02
47 51 0.98
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (47 bp):
TAAGAGCTTACTATTTTCAGCTCGTCACAGCTTACCGTTTCAGCTCA
Found at i:65150116 original size:20 final size:20
Alignment explanation
Indices: 65150091--65150131 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
65150081 CAACGGGCAT
*
65150091 AAATATTGTTTATATGGATG
1 AAATATTGTTTATAGGGATG
65150111 AAATATTGTTTATAGGGATG
1 AAATATTGTTTATAGGGATG
65150131 A
1 A
65150132 GCTACTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (20 bp):
AAATATTGTTTATAGGGATG
Found at i:65153672 original size:28 final size:28
Alignment explanation
Indices: 65153640--65153721 Score: 110
Period size: 29 Copynumber: 2.9 Consensus size: 28
65153630 TACCTGTATC
*
65153640 TGGCCCATTAAGCCCAATCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
65153668 TGGCCCATTAGGCCTAAATCACATTTATA
1 TGGCCCATTAGGCC-CAATCACATTCATA
* *
65153697 TGGCCCGTTAGGCCCAGTCACATTC
1 TGGCCCATTAGGCCCAATCACATTC
65153722 TTATTCATGC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
28 21 0.46
29 25 0.54
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:65159844 original size:37 final size:37
Alignment explanation
Indices: 65159793--65159938 Score: 116
Period size: 37 Copynumber: 3.9 Consensus size: 37
65159783 GTTTAAGTTA
*
65159793 TTAATTAAGTCATAATTTAGACAACTTTAATATGAGT
1 TTAATTATGTCATAATTTAGACAACTTTAATATGAGT
* * * * *
65159830 TTAATTATGACATAATTTGGACATA-TATAATAAGGGTTT
1 TTAATTATGTCATAATTTAGACA-ACTTTAATATGAG--T
* * *
65159869 TTAATTATGTCATAGTTTAGGACATCTTAAATAT-ATGT
1 TTAATTATGTCATAATTTA-GACAACTTTAATATGA-GT
* * * *
65159907 TTAAATATGTCCTAGTTTAGACACCTTTAATA
1 TTAATTATGTCATAATTTAGACAACTTTAATA
65159939 CATGTTCTGT
Statistics
Matches: 85, Mismatches: 18, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
37 39 0.46
38 19 0.22
39 17 0.20
40 10 0.12
ACGTcount: A:0.37, C:0.09, G:0.12, T:0.42
Consensus pattern (37 bp):
TTAATTATGTCATAATTTAGACAACTTTAATATGAGT
Found at i:65159916 original size:38 final size:37
Alignment explanation
Indices: 65159868--65159944 Score: 100
Period size: 38 Copynumber: 2.1 Consensus size: 37
65159858 AATAAGGGTT
* * *
65159868 TTTAATTATGTCATAGTTTAGGACATCTTAAATATATG
1 TTTAAATATGTCATAGTTTA-GACACCTTAAATACATG
* *
65159906 TTTAAATATGTCCTAGTTTAGACACCTTTAATACATG
1 TTTAAATATGTCATAGTTTAGACACCTTAAATACATG
65159943 TT
1 TT
65159945 CTGTTCAGAC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
37 16 0.47
38 18 0.53
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (37 bp):
TTTAAATATGTCATAGTTTAGACACCTTAAATACATG
Found at i:65161640 original size:30 final size:29
Alignment explanation
Indices: 65161606--65161675 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
65161596 AGCATACTCC
**
65161606 TAGCTCATTTTCAACTTACGAGCTAAACCT
1 TAGCTCAACTTCAACTTA-GAGCTAAACCT
* * *
65161636 TAGCTCAACTTCAGCTTAGAGTTTAACCT
1 TAGCTCAACTTCAACTTAGAGCTAAACCT
65161665 TAGCTCAACTT
1 TAGCTCAACTT
65161676 TAGCTCAAGG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 20 0.57
30 15 0.43
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (29 bp):
TAGCTCAACTTCAACTTAGAGCTAAACCT
Done.