Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 22 of 378
Found at i:5834549 original size:16 final size:16
Alignment explanation
Indices: 5834528--5834559 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
5834518 GTAGGTAAGA
5834528 TTTTGAGATTTCAAAT
1 TTTTGAGATTTCAAAT
5834544 TTTTGAGATTTCAAAT
1 TTTTGAGATTTCAAAT
5834560 CCATTAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.50
Consensus pattern (16 bp):
TTTTGAGATTTCAAAT
Found at i:5836654 original size:32 final size:32
Alignment explanation
Indices: 5836609--5836701 Score: 91
Period size: 32 Copynumber: 2.9 Consensus size: 32
5836599 TTGATAATTA
* * *
5836609 ATTTTTTAT-TTAATTTATTATTTAAATTTGAT
1 ATTTTTT-TCTTAATTTAGTAATTAAATTTAAT
** *
5836641 ATTTTTTTCTTAATTCGGTAATTGAATTTAAT
1 ATTTTTTTCTTAATTTAGTAATTAAATTTAAT
*
5836673 A-TTTTTTCTTAATTTAGTACTTAATATTT
1 ATTTTTTTCTTAATTTAGTAATTAA-ATTT
5836702 TTTTTTGTCC
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
31 20 0.41
32 29 0.59
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.61
Consensus pattern (32 bp):
ATTTTTTTCTTAATTTAGTAATTAAATTTAAT
Found at i:5837168 original size:30 final size:26
Alignment explanation
Indices: 5837134--5837213 Score: 99
Period size: 25 Copynumber: 3.0 Consensus size: 26
5837124 ATTTAATAAG
5837134 TTTAAGTACCAAATTAGAAAAAGTGACAAA
1 TTTAAGTACCAAATTAGAAAAA---A-AAA
*
5837164 TTTAAGTACCAAATTAGACAAAAAAA
1 TTTAAGTACCAAATTAGAAAAAAAAA
*
5837190 -TTAATTACCAAATTAGAAAAAAAA
1 TTTAAGTACCAAATTAGAAAAAAAA
5837214 TCAAGTTGAG
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
25 22 0.47
26 3 0.06
27 1 0.02
30 21 0.45
ACGTcount: A:0.57, C:0.10, G:0.09, T:0.24
Consensus pattern (26 bp):
TTTAAGTACCAAATTAGAAAAAAAAA
Found at i:5837198 original size:25 final size:24
Alignment explanation
Indices: 5837135--5837219 Score: 89
Period size: 30 Copynumber: 3.2 Consensus size: 24
5837125 TTTAATAAGT
5837135 TTAAGTACCAAATTAGAAAAAGTGACAAA
1 TTAAGTACCAAATTAG-AAAA---A-AAA
5837164 TTTAAGTACCAAATTAGACAAAAAAA
1 -TTAAGTACCAAATTAGA-AAAAAAA
*
5837190 TTAATTACCAAATTAGAAAAAAAA
1 TTAAGTACCAAATTAGAAAAAAAA
*
5837214 TCAAGT
1 TTAAGT
5837220 TGAGATACTA
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
24 11 0.22
25 16 0.31
26 3 0.06
27 1 0.02
29 1 0.02
30 19 0.37
ACGTcount: A:0.56, C:0.11, G:0.09, T:0.24
Consensus pattern (24 bp):
TTAAGTACCAAATTAGAAAAAAAA
Found at i:5838361 original size:26 final size:26
Alignment explanation
Indices: 5838324--5838459 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
5838314 TGATACAAAT
* *
5838324 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
5838350 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
5838376 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
5838402 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
5838428 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
5838454 TGATAA
1 TGATAA
5838460 GAATATCATT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:5839999 original size:26 final size:26
Alignment explanation
Indices: 5839947--5839999 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
5839937 TTTACAGTTT
*
5839947 TACCCCTAGGTGATAAATTATCGAAA
1 TACCCCTAGGTGATAAATTACCGAAA
* *
5839973 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTGATAAATT-ACCGAAA
5839999 T
1 T
5840000 GCATATTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (26 bp):
TACCCCTAGGTGATAAATTACCGAAA
Found at i:5847084 original size:25 final size:25
Alignment explanation
Indices: 5847056--5847104 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
5847046 ATATATATCA
5847056 TAAA-ATAGCACATAAAAGAAATAAT
1 TAAACATAGCACATAAAA-AAATAAT
*
5847081 TAAACATAGCATATAAAAAAATAA
1 TAAACATAGCACATAAAAAAATAA
5847105 AATTATGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.65, C:0.08, G:0.06, T:0.20
Consensus pattern (25 bp):
TAAACATAGCACATAAAAAAATAAT
Found at i:5847623 original size:22 final size:21
Alignment explanation
Indices: 5847593--5847658 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
5847583 TACAAATTAA
5847593 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
5847615 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
5847636 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
5847655 ATCT
1 ATCT
5847659 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:5847645 original size:19 final size:19
Alignment explanation
Indices: 5847610--5847707 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
5847600 AGATTACAAG
5847610 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
5847631 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
5847650 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
5847667 ATCATGTCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
5847686 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
5847705 ATC
1 ATC
5847708 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:5847717 original size:36 final size:38
Alignment explanation
Indices: 5847610--5847707 Score: 155
Period size: 36 Copynumber: 2.6 Consensus size: 38
5847600 AGATTACAAG
5847610 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTGCATATCATATCTAAGATTGCAT
*
5847650 ATCATATCTAAGATTG--TATCATGTCTAAGATTGCAT
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGCAT
5847686 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTGCATATC
5847708 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTAAGATTGCATATCATATCTAAGATTGCAT
Found at i:5848129 original size:45 final size:45
Alignment explanation
Indices: 5848064--5848285 Score: 161
Period size: 45 Copynumber: 5.0 Consensus size: 45
5848054 GGAAGGCGAT
* * * *
5848064 ATCTGTTATCTTTGACCTGCTCCCCGTTTACTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
5848109 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * ** * * * *
5848154 ATTTGCT-TCTTCAATCTGCTCCTTG-CAAACT-CA-TGACTGTCAT
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAA-TACAGAGAC-GCCAA
* * * * *
5848197 GT-TGATATCTTCGATCTGCTCTCCGTCGAACACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * *
5848241 ATCTGCT-TCTTCGATTTGTTCCCTGGC-AATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
5848284 AT
1 AT
5848286 TATCTTAGAT
Statistics
Matches: 137, Mismatches: 33, Indels: 16
0.74 0.18 0.09
Matches are distributed among these distances:
42 6 0.04
43 39 0.28
44 40 0.29
45 52 0.38
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:5848554 original size:89 final size:89
Alignment explanation
Indices: 5848277--5848879 Score: 614
Period size: 89 Copynumber: 6.8 Consensus size: 89
5848267 CAATACAGAG
* * * * * * *
5848277 ATGCCAAATTATCTTAGATTTGCTTT-A-GCGTAAACA-CGTGAAAGCCAAATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATC-TGAAAGTCAGATCTGCTATGTCTT
* * *
5848339 CGATTTGTTCCTTGTAAACACAAGG
65 CGATTTGCTCTTTGTAAACACAAGA
* * * *
5848364 ATGCCAAATCATCTTGGATCTGC-TTCA-GT-ATAAACATCTGAAGGTTAGATCTGCTATGT-GT
1 ATGCCAAATCATCTTGGATCTGCTTTGATGTGA-AAACATCTGAAAGTCAGATCTGCTATGTCTT
** * *
5848425 C---TT-CTCTCCGTCAAATA-TAGA
65 CGATTTGCTCTTTGT-AAACACAAGA
* * *
5848446 GACGCCAGATCTGTTATCTTGGATCTACTTTGATGTGAAAACATCTGAAAGTCAGATCTGCTATG
1 -ATGCCAAATC----ATCTTGGATCTGCTTTGATGTGAAAACATCTGAAAGTCAGATCTGCTATG
5848511 TCTTCGATTTGCTCTTTGTAAACACAAGA
61 TCTTCGATTTGCTCTTTGTAAACACAAGA
* * * *
5848540 ATACCAAATCATCTTGGATCTGC-TTCA-GT-ATAAACACCTGAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTTGATGTGA-AAACATCTGAAAGTCAGATCTGCTATGTCTT
* *
5848602 CGATTTGCTCCTTGTAAATACAAGA
65 CGATTTGCTCTTTGTAAACACAAGA
* *
5848627 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC-CAAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCTGAAA-GTCAGATCTGCTATGTCTT
*
5848691 CGATTTGCTCCTTGTAAACACAAGA
65 CGATTTGCTCTTTGTAAACACAAGA
* *
5848716 ATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATC-CAAAGGTCAGATCTACTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCTGAAA-GTCAGATCTGCTATGTCTT
*
5848780 CGATTTG-TTTCTTGTAAACACAAGA
65 CGATTTGCTCT-TTGTAAACACAAGA
* * * *
5848805 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATC-CAAAGGTTAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCTGAAA-GTCAGATCTGCTATGTCTT
*
5848869 CGATCTGCTCT
65 CGATTTGCTCT
5848880 CTGTCGAATA
Statistics
Matches: 437, Mismatches: 54, Indels: 47
0.81 0.10 0.09
Matches are distributed among these distances:
82 6 0.01
83 14 0.03
86 5 0.01
87 132 0.30
88 12 0.03
89 240 0.55
90 6 0.01
93 13 0.03
94 9 0.02
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCTGAAAGTCAGATCTGCTATGTCTTC
GATTTGCTCTTTGTAAACACAAGA
Found at i:5848842 original size:178 final size:176
Alignment explanation
Indices: 5848325--5848878 Score: 730
Period size: 176 Copynumber: 3.1 Consensus size: 176
5848315 TGAAAGCCAA
* *
5848325 ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTC
1 ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
* * * * * * * *
5848390 AGTATAAACATCTGAAGGTTAGATCTGCTATGT-GTC---TTCTCTC-CGTCAAATA-TAGAGAC
66 AGTATAAACATCCGAAGGTCAGATCTGCTATGTCTTCGATTTGTTTCTTGT-AAATACAAGA-AT
* * *
5848449 GCCAGATCTGTTATCTTGGATCTACTTTGATGTGAAAACATCTGAAA-GTCAG
129 GCCAAATC----ATCTTGGATCTACTTCGATGTGAAAACATC-CAAAGGTCAG
* *
5848501 ATCTGCTATGTCTTCGATTTGCTCTTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTC
1 ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
* *
5848566 AGTATAAACA-CCTGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAATACAAGAATG
66 AGTATAAACATCC-GAAGGTCAGATCTGCTATGTCTTCGATTTGTTTCTTGTAAATACAAGAATG
*
5848630 CCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAG
130 CCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAG
5848677 ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTT
1 ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC-TT
* * * *
5848742 GATGTGA-AAACATCCAAAGGTCAGATCTACTATGTCTTCGATTTGTTTCTTGTAAACACAAGAA
65 CA-GT-ATAAACATCCGAAGGTCAGATCTGCTATGTCTTCGATTTGTTTCTTGTAAATACAAGAA
*
5848806 TGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTTAG
128 TGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAG
*
5848855 ATCTGCTATGTCTTCGATCTGCTC
1 ATCTGCTATGTCTTCGATTTGCTC
5848879 TCTGTCGAAT
Statistics
Matches: 337, Mismatches: 29, Indels: 22
0.87 0.07 0.06
Matches are distributed among these distances:
175 4 0.01
176 183 0.54
177 5 0.01
178 121 0.36
179 3 0.01
180 16 0.05
181 5 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (176 bp):
ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
AGTATAAACATCCGAAGGTCAGATCTGCTATGTCTTCGATTTGTTTCTTGTAAATACAAGAATGC
CAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAG
Found at i:5849153 original size:84 final size:84
Alignment explanation
Indices: 5849042--5849660 Score: 926
Period size: 84 Copynumber: 7.4 Consensus size: 84
5849032 CATATCTTCG
* * * *
5849042 ACCTGTTACCCTACTGCTTAGGAGATTAAGGCGGGTCTTAGATCTACTCCACTACTGCTTAGGGA
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGA
*
5849107 GATAAGATCTGCGAATTTA
66 GATAAGATCTGCAAATTTA
* * *
5849126 ACCTGTTACCTTACTGCTTAGGGGATTAAGGTGAGTCGTCATCGATCTGCTCCGCTACTGCTTAG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAG
* *
5849191 GGAGATAAGATTTGC-----GA
63 GGAGATAAGATCTGCAAATTTA
* * **
5849208 ACCTGTTACCCTACTGCTTAGGGGATTAAGGTGCATCGTCTTCGATCTACTCCACTACTATTTAG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAG
5849273 GGAGATAAGATCTGCAAATTTA
63 GGAGATAAGATCTGCAAATTTA
* * * * *
5849295 ACCTGTTACCCTACCGCTTAGGGGATTAAGGTGAGTATTTGATCTGCTCCACTACTACTTAGGGA
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGA
5849360 GATAAGATCTGCAAATTTA
66 GATAAGATCTGCAAATTTA
*
5849379 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTACTTAGGGA
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGA
*
5849444 GATAAGATCTACAAATTTA
66 GATAAGATCTGCAAATTTA
5849463 ACCTGTTACCCTACTGCTTA-GGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGA
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGA
*
5849527 GATAAGATCTACAAATTTA
66 GATAAGATCTGCAAATTTA
* *
5849546 ACCTGTTACCCTACTGCTTAGGGGATTAATGTGAGTCTTCGATCTGCTCCACTACTGCTTAGGGA
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGA
5849611 GATAAGATCTGCAAATTTA
66 GATAAGATCTGCAAATTTA
5849630 ACCTGTTACCCTACTGCTTAGGGGATTAAGG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGG
5849661 TGCTGAATTT
Statistics
Matches: 492, Mismatches: 31, Indels: 24
0.90 0.06 0.04
Matches are distributed among these distances:
82 67 0.14
83 83 0.17
84 269 0.55
85 4 0.01
86 1 0.00
87 68 0.14
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (84 bp):
ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGA
GATAAGATCTGCAAATTTA
Found at i:5849562 original size:167 final size:168
Alignment explanation
Indices: 5849042--5849662 Score: 939
Period size: 167 Copynumber: 3.7 Consensus size: 168
5849032 CATATCTTCG
* * * *
5849042 ACCTGTTACCCTACTGCTTAGGAGATTAAGGCGGGTCTTAGATCTACTCCACTACTGCTTAGGGA
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTACTTAGGGA
* *
5849107 GATAAGATCTGCGAATTTAACCTGTTACCTTACTGCTTAGGGGATTAAGGTGAGTCGTCATCGAT
66 GATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTC-T--TCGAT
* * *
5849172 CTGCTCCGCTACTGCTTAGGGAGATAAGATTTGC-----GA
128 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTA
* *
5849208 ACCTGTTACCCTACTGCTTAGGGGATTAAGGTGCATCGTCTTCGATCTACTCCACTACTATTTAG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTACTCCACTACTACTTAG
* * *
5849273 GGAGATAAGATCTGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAGGTGAGTATTTGAT
63 GGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGAT
*
5849338 CTGCTCCACTACTACTTAGGGAGATAAGATCTGCAAATTTA
128 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTA
*
5849379 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTACTTAGGGA
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTACTTAGGGA
* *
5849444 GATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTA-GGGATTAAGGCGAGTCTTCGATCTG
66 GATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTG
*
5849508 CTCCACTACTGCTTAGGGAGATAAGATCTACAAATTTA
131 CTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTA
* * * *
5849546 ACCTGTTACCCTACTGCTTAGGGGATTAATGTGAGTCTTCGATCTGCTCCACTACTGCTTAGGGA
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTACTTAGGGA
5849611 GATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTG
66 GATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTG
5849663 CTGAATTTTG
Statistics
Matches: 416, Mismatches: 30, Indels: 16
0.90 0.06 0.03
Matches are distributed among these distances:
166 66 0.16
167 158 0.38
168 78 0.19
169 80 0.19
170 1 0.00
171 33 0.08
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (168 bp):
ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTACTTAGGGA
GATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTG
CTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTA
Found at i:5849574 original size:251 final size:251
Alignment explanation
Indices: 5849042--5849660 Score: 933
Period size: 251 Copynumber: 2.5 Consensus size: 251
5849032 CATATCTTCG
* * * *
5849042 ACCTGTTACCCTACTGCTTAGGAGATTAAGGCGGGTCTTAGATCTACTCCACTACTGCTTAGGGA
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTAGATCTGCTCCACTACTGCTTAGGGA
* * *
5849107 GATAAGATCTGCGAATTTAACCTGTTACCTTACTGCTTAGGGGATTAAGGTGAGTCGTCATCGAT
66 GATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGT-ATCGAT
* * * *
5849172 CTGCTCCGCTACTGCTTAGGGAGATAAGATTTGCGAACCTGTTACCCTACTGCTTAGGGGATTAA
130 CTGCTCCACTACTACTTAGGGAGATAAGATCTACGAACCTGTTACCCTACTGCTTAGGGGATTAA
* * *
5849237 GGTGCATCGTCTTCGATCTACTCCACTACTATTTAGGGAGATAAGATCTGCAAATTTA
195 GGCGCA-CGTCTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTACAAATTTA
* * * *
5849295 ACCTGTTACCCTACCGCTTAGGGGATTAAGGTGAGTATTTGATCTGCTCCACTACTACTTAGGGA
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTAGATCTGCTCCACTACTGCTTAGGGA
5849360 GATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T-TCGATC
66 GATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTATCGATC
*
5849423 TGCTCCACTACTACTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTA-GGGA
131 TGCTCCACTACTACTTAGGGAGATAAGATCTAC-----GAACCTGTTACCCTACTGCTTAGGGGA
* *
5849487 TTAAGGCG-A-GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAATTTA
191 TTAAGGCGCACGTCTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTACAAATTTA
* *
5849546 ACCTGTTACCCTACTGCTTAGGGGATTAATGTGAGTCTTCGATCTGCTCCACTACTGCTTAGGGA
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTAGATCTGCTCCACTACTGCTTAGGGA
5849611 GATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGG
66 GATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGG
5849661 TGCTGAATTT
Statistics
Matches: 335, Mismatches: 26, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
250 35 0.10
251 156 0.47
252 1 0.00
253 111 0.33
254 11 0.03
255 21 0.06
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (251 bp):
ACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTAGATCTGCTCCACTACTGCTTAGGGA
GATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTATCGATC
TGCTCCACTACTACTTAGGGAGATAAGATCTACGAACCTGTTACCCTACTGCTTAGGGGATTAAG
GCGCACGTCTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTACAAATTTA
Found at i:5850616 original size:1 final size:1
Alignment explanation
Indices: 5850610--5850670 Score: 77
Period size: 1 Copynumber: 61.0 Consensus size: 1
5850600 GGCCTCTCCA
* * * * *
5850610 TTTTTTTTCTTTTTTCTCTTTTTTTTTTTTTTTTTTTCTTTTTCTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5850671 GAAATAGAAG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (1 bp):
T
Found at i:5850628 original size:22 final size:22
Alignment explanation
Indices: 5850603--5850648 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
5850593 TCACCTTGGC
5850603 CTCTCCATTTTTTTTCTTTTTT
1 CTCTCCATTTTTTTTCTTTTTT
*** *
5850625 CTCTTTTTTTTTTTTTTTTTTT
1 CTCTCCATTTTTTTTCTTTTTT
5850647 CT
1 CT
5850649 TTTTCTTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (22 bp):
CTCTCCATTTTTTTTCTTTTTT
Found at i:5850651 original size:28 final size:28
Alignment explanation
Indices: 5850610--5850670 Score: 106
Period size: 27 Copynumber: 2.2 Consensus size: 28
5850600 GGCCTCTCCA
5850610 TTTTTTTTCTTTTTTCTCTTTTTTTTTTT
1 TTTTTTTTCTTTTTTCT-TTTTTTTTTTT
5850639 TTTTTTTTC-TTTTTCTTTTTTTTTTTT
1 TTTTTTTTCTTTTTTCTTTTTTTTTTTT
5850666 TTTTT
1 TTTTT
5850671 GAAATAGAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 16 0.50
28 7 0.22
29 9 0.28
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (28 bp):
TTTTTTTTCTTTTTTCTTTTTTTTTTTT
Found at i:5850657 original size:22 final size:22
Alignment explanation
Indices: 5850610--5850668 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
5850600 GGCCTCTCCA
* *
5850610 TTTTTTTTCTTTTTTCTCTTTT
1 TTTTTTTTTTTTTTTCTCTTTC
*
5850632 TTTTTTTTTTTTTTTCTTTTTC
1 TTTTTTTTTTTTTTTCTCTTTC
5850654 TTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTT
5850669 TTGAAATAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (22 bp):
TTTTTTTTTTTTTTTCTCTTTC
Found at i:5856315 original size:22 final size:21
Alignment explanation
Indices: 5856285--5856331 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
5856275 TACAAATTAA
5856285 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
5856307 ATCTTCAAGATTTCATATCAT
1 ATCTCCAAGATTACAGATCAT
5856328 ATCT
1 ATCT
5856332 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.36
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:5856344 original size:17 final size:17
Alignment explanation
Indices: 5856322--5856358 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
5856312 CAAGATTTCA
5856322 TATCATATCTAAGATTG
1 TATCATATCTAAGATTG
5856339 TATCATATCTAAGATTG
1 TATCATATCTAAGATTG
5856356 TAT
1 TAT
5856359 ATCCTTAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (17 bp):
TATCATATCTAAGATTG
Found at i:5856768 original size:44 final size:44
Alignment explanation
Indices: 5856705--5856792 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
5856695 ACAACTTAGT
* *
5856705 AGTCACTTCGAAGAATATAAACAATGCAAGTCCAAGAGTTAAAA
1 AGTCACTTCAAAGAATATAAACAATGCAAATCCAAGAGTTAAAA
* * *
5856749 AGTCACTTCAAATAATATAAACAATGCAAATTCAATAGTTAAAA
1 AGTCACTTCAAAGAATATAAACAATGCAAATCCAAGAGTTAAAA
5856793 GTGATGGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.50, C:0.15, G:0.11, T:0.24
Consensus pattern (44 bp):
AGTCACTTCAAAGAATATAAACAATGCAAATCCAAGAGTTAAAA
Found at i:5859600 original size:13 final size:13
Alignment explanation
Indices: 5859579--5859623 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
5859569 TTCCTTAATC
*
5859579 TTTAGTTTATTAT
1 TTTATTTTATTAT
5859592 TTTATTTTAGTTA-
1 TTTATTTTA-TTAT
5859605 TTTATTTTAATTAT
1 TTTATTTT-ATTAT
5859619 TTTAT
1 TTTAT
5859624 CTGACTTGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 19 0.68
14 9 0.32
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (13 bp):
TTTATTTTATTAT
Found at i:5859602 original size:18 final size:18
Alignment explanation
Indices: 5859579--5859613 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
5859569 TTCCTTAATC
5859579 TTTAGTT-TATTATTTTAT
1 TTTAGTTAT-TTATTTTAT
5859597 TTTAGTTATTTATTTTA
1 TTTAGTTATTTATTTTA
5859614 ATTATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (18 bp):
TTTAGTTATTTATTTTAT
Found at i:5876552 original size:26 final size:26
Alignment explanation
Indices: 5876502--5876553 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
5876492 TATATGTATT
*
5876502 AAAATATATACGTAATAATAGAAATA
1 AAAATATATACGTAATAATAAAAATA
* * *
5876528 AAAATGTATACGTAGTATTAAAAATA
1 AAAATATATACGTAATAATAAAAATA
5876554 TATACATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.29
Consensus pattern (26 bp):
AAAATATATACGTAATAATAAAAATA
Found at i:5876682 original size:21 final size:22
Alignment explanation
Indices: 5876649--5876699 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
5876639 TGATATTAGA
5876649 AGTATG-TACAAAAAT-AAAAAT
1 AGTATGATA-AAAAATGAAAAAT
*
5876670 AGTATGATAAAAAGTGAAAAAT
1 AGTATGATAAAAAATGAAAAAT
5876692 -G-ATGATAA
1 AGTATGATAA
5876700 TAATATATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 7 0.26
21 12 0.44
22 8 0.30
ACGTcount: A:0.59, C:0.02, G:0.16, T:0.24
Consensus pattern (22 bp):
AGTATGATAAAAAATGAAAAAT
Found at i:5876863 original size:45 final size:47
Alignment explanation
Indices: 5876802--5876975 Score: 148
Period size: 45 Copynumber: 3.8 Consensus size: 47
5876792 CAATATAGAC
* *
5876802 AAAAATATATACATAATGTAG-TATTGAAAATATTTACAT-AATATA
1 AAAAATATATACATAATGTAGATATTAAAAATATATACATAAATATA
*
5876847 AAAAATATATGA-ATAATAT-GATATTAAAAATATATACATAAAAATATA
1 AAAAATATAT-ACATAATGTAGATATTAAAAATATATACAT--AAATATA
* * * * * *
5876895 ATAAATATATATATAATGTA-ATA-TATATATATATATATATATATA
1 AAAAATATATACATAATGTAGATATTAAAAATATATACATAAATATA
* * *
5876940 TATAAA-ATATACATAATATAG-TTTTAAAAATATATA
1 -AAAAATATATACATAATGTAGATATTAAAAATATATA
5876976 TAATACATAC
Statistics
Matches: 105, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
44 1 0.01
45 51 0.49
46 16 0.15
47 13 0.12
48 24 0.23
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.37
Consensus pattern (47 bp):
AAAAATATATACATAATGTAGATATTAAAAATATATACATAAATATA
Found at i:5876902 original size:68 final size:68
Alignment explanation
Indices: 5876829--5876955 Score: 152
Period size: 68 Copynumber: 1.9 Consensus size: 68
5876819 GTAGTATTGA
*
5876829 AAATATTTACATAATATAAAAAATATATGA-ATA-ATATGATAT-TAAAAATATATACATAAAAA
1 AAATATATACATAATATAAAAAATATAT-ATATATATAT-ATATATAAAAA-ATATACATAAAAA
5876891 TATAAT
63 TATAAT
* * * * *
5876897 AAATATATATATAATGTAATATATATATATATATATATATATATATAAAATATACATAA
1 AAATATATACATAATATAAAAAATATATATATATATATATATATAAAAAATATACATAA
5876956 TATAGTTTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
67 1 0.02
68 40 0.80
69 9 0.18
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (68 bp):
AAATATATACATAATATAAAAAATATATATATATATATATATATAAAAAATATACATAAAAATAT
AAT
Found at i:5876906 original size:2 final size:2
Alignment explanation
Indices: 5876876--5876943 Score: 70
Period size: 2 Copynumber: 35.5 Consensus size: 2
5876866 GATATTAAAA
* * * * *
5876876 AT AT AT AC AT AA AA AT AT A- AT AA AT AT AT AT AT A- AT GT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5876915 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5876944 AAATATACAT
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
1 3 0.05
2 52 0.95
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (2 bp):
AT
Found at i:5876919 original size:16 final size:16
Alignment explanation
Indices: 5876890--5876959 Score: 85
Period size: 15 Copynumber: 4.6 Consensus size: 16
5876880 ATACATAAAA
5876890 ATATAATA-AATATAT
1 ATATAATATAATATAT
*
5876905 ATATAATGTAATATAT
1 ATATAATATAATATAT
5876921 ATAT-ATAT-ATATAT
1 ATATAATATAATATAT
*
5876935 ATAT-ATATAAAATAT
1 ATATAATATAATATAT
*
5876950 ACATAATATA
1 ATATAATATA
5876960 GTTTTAAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
14 14 0.29
15 18 0.38
16 16 0.33
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (16 bp):
ATATAATATAATATAT
Found at i:5876920 original size:14 final size:16
Alignment explanation
Indices: 5876876--5876943 Score: 70
Period size: 15 Copynumber: 4.4 Consensus size: 16
5876866 GATATTAAAA
* * *
5876876 ATATATACATAAAAAT
1 ATATATATATATATAT
*
5876892 ATA-ATAAATATATAT
1 ATATATATATATATAT
*
5876907 ATA-ATGTA-ATATAT
1 ATATATATATATATAT
5876921 ATATATATATATATAT
1 ATATATATATATATAT
5876937 ATATATA
1 ATATATA
5876944 AAATATACAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
14 9 0.20
15 19 0.43
16 16 0.36
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (16 bp):
ATATATATATATATAT
Found at i:5877084 original size:23 final size:23
Alignment explanation
Indices: 5877039--5877084 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
5877029 AATACCTCAT
* *
5877039 AAATATATACATATATATGTTAA
1 AAATAAATACATATATATATTAA
5877062 AAATAAATACATAT-TAATATTAA
1 AAATAAATACATATAT-ATATTAA
5877085 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATAAATACATATATATATTAA
Found at i:5877225 original size:23 final size:23
Alignment explanation
Indices: 5877154--5877232 Score: 65
Period size: 23 Copynumber: 3.4 Consensus size: 23
5877144 TAATAGTAAT
* * *
5877154 TATAATACTAATACTAATAATAGA
1 TATAATAATAGTAGTAATAAT-GA
*
5877178 TATAATAATAGTAGTAA-AATAA
1 TATAATAATAGTAGTAATAATGA
5877200 TATAAATAAT-GT-GTACATAATGA
1 TAT-AATAATAGTAGTA-ATAATGA
*
5877223 TATGATAATA
1 TATAATAATA
5877233 AAAAAGGACG
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
21 3 0.07
22 12 0.27
23 16 0.36
24 14 0.31
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.34
Consensus pattern (23 bp):
TATAATAATAGTAGTAATAATGA
Found at i:5878799 original size:44 final size:44
Alignment explanation
Indices: 5878741--5879589 Score: 640
Period size: 44 Copynumber: 19.6 Consensus size: 44
5878731 TCCCGTCTAA
* * * * * * **
5878741 TACAGAGACGCCAAATCTGTCATCTTTGATCTACCCTCTGACAA
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
5878785 TACAGAGATGCCAAATCCGTTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
5878829 TACAGAGACGCCAAATCTGTTATATTTGATCTGCTCTCCGCCGT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
5878873 TACAGAGACGCTAAATCTGCTATCTTCGGTCTCCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
5878917 TACTGAGACACCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
5878961 TACAGAGACGCCAAATCTGTTATATTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
5879005 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
5879049 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
** * * * * *** *
5879093 TATGGAGACGCTC-GATCTG--CTCTCCG--CCGCTACGGAGACGC
1 TACAGAGACGC-CAAATCTGTTATCTTCGATCTGCT-CTCCGCCGC
** * * ** * * * *
5879134 --CA-A-ATCTG--TTATCT-TCGATCTACTCTCTGC-CGCCACGGA
1 TACAGAGA-C-GCCAAATCTGT-TATCTTCGATCTGCTCTCCGCCGC
* * ** * * * ** * * * **
5879173 GAC-GCCAAATCTG--TTATCT-TCGACCTGCTCTCCGCCGCTACGGAGAC
1 TACAG--AGA-C-GCCAAATCTGT-TATCTTCGATCTG-CTCTCCGCCG-C
** ** * *
5879220 GCCA-A-ATCTG--TTATCT-TCGATC-T-G-----CTCTCCGCCGT
1 TACAGAGA-C-GCCAAATCTGT-TATCTTCGATCTGCTCTCCGCCGC
* * *
5879255 TACGGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
5879299 CACGGAGACGCCAAATCTGTTATTTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
5879343 TACGGAGACACCAAATCTGTTATCTTCGATCTGCTCTCTGCCGT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
5879387 TACGGATACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
5879431 TACAGAGATGTCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
5879475 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
5879519 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
5879563 TACAGAGACGCCAAATCTGTTATCTTC
1 TACAGAGACGCCAAATCTGTTATCTTC
5879590 TTAAATGAAG
Statistics
Matches: 666, Mismatches: 107, Indels: 64
0.80 0.13 0.08
Matches are distributed among these distances:
35 2 0.00
36 8 0.01
37 13 0.02
38 4 0.01
39 9 0.01
40 4 0.01
41 9 0.01
42 5 0.01
43 1 0.00
44 603 0.91
45 3 0.00
46 3 0.00
47 2 0.00
ACGTcount: A:0.21, C:0.32, G:0.18, T:0.29
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:5878877 original size:88 final size:88
Alignment explanation
Indices: 5878741--5879589 Score: 1035
Period size: 88 Copynumber: 9.8 Consensus size: 88
5878731 TCCCGTCTAA
* * * * * ** * *
5878741 TACAGAGACGCCAAATCTGTCATCTTTGATCTACCCTCTGACAATACAGAGATGCCAAATCCGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTT
*
5878806 ATCTTTGATCTGCTCTCCGCCGC
66 ATCTTCGATCTGCTCTCCGCCGC
* * * * * *
5878829 TACAGAGACGCCAAATCTGTTATATTTGATCTGCTCTCCGCCGTTACAGAGACGCTAAATCTGCT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTT
* *
5878894 ATCTTCGGTCTCCTCTCCGCCGC
66 ATCTTCGATCTGCTCTCCGCCGC
* * *
5878917 TACTGAGACACCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTT
* *
5878982 ATATTTGATCTGCTCTCCGCCGC
66 ATCTTCGATCTGCTCTCCGCCGC
*
5879005 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGATGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTT
*
5879070 ATCTTCGATCTGCTCTCTGCCGC
66 ATCTTCGATCTGCTCTCCGCCGC
** * * * * * * *
5879093 TATGGAGACGCTC-GATCTG--CTCTCCG--CCGCT-ACGGA-G--AC---G-CC--AAATCTGT
1 TACAGAGACGC-CAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGT
* *
5879143 TATCTTCGATCTACTCTCTGCCGC
65 TATCTTCGATCTGCTCTCCGCCGC
* * * * *
5879167 CACGGAGACGCCAAATCTGTTATCTTCGACCTGCTCTCCGCCGCTACGGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTT
*
5879232 ATCTTCGATCTGCTCTCCGCCGT
66 ATCTTCGATCTGCTCTCCGCCGC
* * * * * *
5879255 TACGGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCTGCCGCCACGGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTT
*
5879320 ATTTTCGATCTGCTCTCCGCCGC
66 ATCTTCGATCTGCTCTCCGCCGC
* * * * * * *
5879343 TACGGAGACACCAAATCTGTTATCTTCGATCTGCTCTCTGCCGTTACGGATACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTT
5879408 ATCTTCGATCTGCTCTCCGCCGC
66 ATCTTCGATCTGCTCTCCGCCGC
* * * *
5879431 TACAGAGATGTCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTT
5879496 ATCTTCGATCTGCTCTCCGCCGC
66 ATCTTCGATCTGCTCTCCGCCGC
*
5879519 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTT
5879584 ATCTTC
66 ATCTTC
5879590 TTAAATGAAG
Statistics
Matches: 663, Mismatches: 82, Indels: 32
0.85 0.11 0.04
Matches are distributed among these distances:
73 1 0.00
74 45 0.07
76 5 0.01
77 1 0.00
78 4 0.01
79 2 0.00
80 3 0.00
82 3 0.00
83 3 0.00
84 4 0.01
85 1 0.00
86 6 0.01
88 584 0.88
89 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.18, T:0.29
Consensus pattern (88 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTT
ATCTTCGATCTGCTCTCCGCCGC
Found at i:5878931 original size:132 final size:132
Alignment explanation
Indices: 5878741--5879589 Score: 1159
Period size: 132 Copynumber: 6.5 Consensus size: 132
5878731 TCCCGTCTAA
* * * * * * ** * *
5878741 TACAGAGACGCCAAATCTGTCATCTTTGATCTACCCTCTGACAATACAGAGATGCCAAATCCGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
* * *
5878806 ATCTTTGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATATTTGATCTGCTCTCCGCC
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
*
5878871 GT
131 GC
* * * * * *
5878873 TACAGAGACGCTAAATCTGCTATCTTCGGTCTCCTCTCCGCCGCTACTGAGACACCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
* *
5878938 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATATTTGATCTGCTCTCCGCC
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
5879003 GC
131 GC
* *
5879005 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGACGCTACAGAGATGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
* *
5879070 ATCTTCGATCTGCTCTCTGCCGCTA-TG-GA-G----A-C-G----C-TCGATCTGCTCTCCGCC
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
5879121 GC
131 GC
* * * * *
5879123 TACGGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCCGCCACGGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
* *
5879188 ATCTTCGACCTGCTCTCCGCCGCTACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
*
5879253 GT
131 GC
* * * * *
5879255 TACGGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCTGCCGCCACGGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
* * * *
5879320 ATTTTCGATCTGCTCTCCGCCGCTACGGAGACACCAAATCTGTTATCTTCGATCTGCTCTCTGCC
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
*
5879385 GT
131 GC
* * * * *
5879387 TACGGATACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGTCAAATCTGCT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
5879452 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
5879517 GC
131 GC
5879519 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
5879584 ATCTTC
66 ATCTTC
5879590 TTAAATGAAG
Statistics
Matches: 639, Mismatches: 64, Indels: 28
0.87 0.09 0.04
Matches are distributed among these distances:
118 99 0.15
119 1 0.00
120 2 0.00
121 1 0.00
123 1 0.00
124 1 0.00
125 2 0.00
126 1 0.00
127 1 0.00
129 1 0.00
130 2 0.00
131 2 0.00
132 525 0.82
ACGTcount: A:0.21, C:0.32, G:0.18, T:0.29
Consensus pattern (132 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTT
ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
GC
Found at i:5879110 original size:30 final size:30
Alignment explanation
Indices: 5879074--5879133 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
5879064 TCTGTTATCT
* *
5879074 TCGATCTGCTCTCTGCCGCTATGGAGACGC
1 TCGATCTGCTCTCCGCCGCTACGGAGACGC
5879104 TCGATCTGCTCTCCGCCGCTACGGAGACGC
1 TCGATCTGCTCTCCGCCGCTACGGAGACGC
5879134 CAAATCTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.13, C:0.37, G:0.27, T:0.23
Consensus pattern (30 bp):
TCGATCTGCTCTCCGCCGCTACGGAGACGC
Found at i:5879124 original size:74 final size:74
Alignment explanation
Indices: 5879030--5879177 Score: 242
Period size: 74 Copynumber: 2.0 Consensus size: 74
5879020 TCTGTTATCT
* * *
5879030 TCGATCTGCTCTCCGACGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTA
1 TCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCCGCCA
*
5879095 TGGAGACGC
66 CGGAGACGC
* *
5879104 TCGATCTGCTCTCCGCCGCTACGGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCCGCCA
1 TCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCCGCCA
5879169 CGGAGACGC
66 CGGAGACGC
5879178 CAAATCTGTT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.18, C:0.34, G:0.22, T:0.26
Consensus pattern (74 bp):
TCGATCTGCTCTCCGACGCTACAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCCGCCA
CGGAGACGC
Found at i:5879141 original size:30 final size:30
Alignment explanation
Indices: 5879077--5879141 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
5879067 GTTATCTTCG
* * *
5879077 ATCTGCTCTCTGCCGCTATGGAGACGCTCG
1 ATCTGCTCTCCGCCGCTACGGAGACGCTCA
5879107 ATCTGCTCTCCGCCGCTACGGAGACGC-CAA
1 ATCTGCTCTCCGCCGCTACGGAGACGCTC-A
5879137 ATCTG
1 ATCTG
5879142 TTATCTTCGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 1 0.03
30 30 0.97
ACGTcount: A:0.17, C:0.35, G:0.25, T:0.23
Consensus pattern (30 bp):
ATCTGCTCTCCGCCGCTACGGAGACGCTCA
Found at i:5883957 original size:26 final size:26
Alignment explanation
Indices: 5883927--5884008 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
5883917 TGAAATGCCC
5883927 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
5883953 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
5883979 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
5884005 ATCA
1 ATCA
5884009 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:5884599 original size:18 final size:18
Alignment explanation
Indices: 5884566--5884730 Score: 237
Period size: 18 Copynumber: 9.3 Consensus size: 18
5884556 ATATGTAATA
5884566 TTAGATATGA-TGCAATC
1 TTAGATATGATTGCAATC
* *
5884583 TTAAATATAATTGCAATC
1 TTAGATATGATTGCAATC
*
5884601 TTAGATATGA-TACAATC
1 TTAGATATGATTGCAATC
5884618 TTAGATATGATTGCAATC
1 TTAGATATGATTGCAATC
*
5884636 TTAGATATGA-TACAATC
1 TTAGATATGATTGCAATC
5884653 TTAGATATGATTGCAATC
1 TTAGATATGATTGCAATC
*
5884671 TTAGATATGATTGTAATC
1 TTAGATATGATTGCAATC
*
5884689 TTAGATATGATTGTAATC
1 TTAGATATGATTGCAATC
*
5884707 TTAGATATGATATACAATC
1 TTAGATATGAT-TGCAATC
5884726 TTAGA
1 TTAGA
5884731 AGATATGATT
Statistics
Matches: 133, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
17 40 0.30
18 83 0.62
19 10 0.08
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (18 bp):
TTAGATATGATTGCAATC
Found at i:5884606 original size:35 final size:35
Alignment explanation
Indices: 5884566--5884730 Score: 249
Period size: 35 Copynumber: 4.6 Consensus size: 35
5884556 ATATGTAATA
* * *
5884566 TTAGATATGATGCAATCTTAAATATAATTGCAATC
1 TTAGATATGATACAATCTTAGATATGATTGCAATC
5884601 TTAGATATGATACAATCTTAGATATGATTGCAATC
1 TTAGATATGATACAATCTTAGATATGATTGCAATC
5884636 TTAGATATGATACAATCTTAGATATGATTGCAATC
1 TTAGATATGATACAATCTTAGATATGATTGCAATC
** *
5884671 TTAGATATGATTGTAATCTTAGATATGATTGTAATC
1 TTAGATATGA-TACAATCTTAGATATGATTGCAATC
5884707 TTAGATATGATATACAATCTTAGA
1 TTAGATATG--ATACAATCTTAGA
5884731 AGATATGATT
Statistics
Matches: 119, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
35 77 0.65
36 31 0.26
37 10 0.08
38 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (35 bp):
TTAGATATGATACAATCTTAGATATGATTGCAATC
Found at i:5884671 original size:53 final size:54
Alignment explanation
Indices: 5884566--5884730 Score: 246
Period size: 53 Copynumber: 3.1 Consensus size: 54
5884556 ATATGTAATA
* *
5884566 TTAGATATGA-TGCAATCTTAAATATAATTGCAATCTTAGATATGA-TACAATC
1 TTAGATATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATTACAATC
* *
5884618 TTAGATATGATTGCAATCTTAGATATGA-TACAATCTTAGATATGATTGCAATC
1 TTAGATATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATTACAATC
* *
5884671 TTAGATATGATTGTAATCTTAGATATGATTGTAATCTTAGATATGATATACAATC
1 TTAGATATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGAT-TACAATC
5884726 TTAGA
1 TTAGA
5884731 AGATATGATT
Statistics
Matches: 101, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
52 26 0.26
53 48 0.48
54 16 0.16
55 11 0.11
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (54 bp):
TTAGATATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATTACAATC
Found at i:5885258 original size:17 final size:15
Alignment explanation
Indices: 5885212--5885268 Score: 51
Period size: 17 Copynumber: 3.5 Consensus size: 15
5885202 CCAATATATT
5885212 TTATATTTTTTATATAA
1 TTAT-TTTTTTATA-AA
*
5885229 TTATTATTCTTATAAA
1 TTATT-TTTTTATAAA
*
5885245 TATATTTTTATTATATA
1 T-TATTTTT-TTATAAA
5885262 TTATTTT
1 TTATTTT
5885269 AAATTTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
16 12 0.35
17 22 0.65
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATTTTTTTATAAA
Found at i:5887319 original size:25 final size:25
Alignment explanation
Indices: 5887264--5887322 Score: 102
Period size: 24 Copynumber: 2.4 Consensus size: 25
5887254 TAAAAAATTC
5887264 AAAAAAATTATAAAAATTATTTTTT
1 AAAAAAATTATAAAAATTATTTTTT
*
5887289 -TAAAAATTATAAAAATTATTTTTT
1 AAAAAAATTATAAAAATTATTTTTT
5887313 AAAAAAATTA
1 AAAAAAATTA
5887323 AAATTTATCT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 23 0.74
25 8 0.26
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
AAAAAAATTATAAAAATTATTTTTT
Found at i:5887324 original size:23 final size:24
Alignment explanation
Indices: 5887264--5887330 Score: 91
Period size: 24 Copynumber: 2.8 Consensus size: 24
5887254 TAAAAAATTC
5887264 AAAAAAATTATAAAAATTATTTTTT
1 AAAAAAA-TATAAAAATTATTTTTT
* *
5887289 TAAAAATTATAAAAATTATTTTTT
1 AAAAAAATATAAAAATTATTTTTT
*
5887313 AAAAAAAT-TAAAATTTAT
1 AAAAAAATATAAAAATTAT
5887331 CTAATTGCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 9 0.24
24 23 0.62
25 5 0.14
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
AAAAAAATATAAAAATTATTTTTT
Found at i:5889468 original size:19 final size:17
Alignment explanation
Indices: 5889442--5889488 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
5889432 ATTTTAAAAA
5889442 TAAAAAATATTAAATTATTT
1 TAAAAAATATT-AA-T-TTT
*
5889462 TAAAAATTATTAATTTT
1 TAAAAAATATTAATTTT
5889479 TAAAAAATAT
1 TAAAAAATAT
5889489 AAAAATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 12 0.48
18 1 0.04
19 2 0.08
20 10 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TAAAAAATATTAATTTT
Found at i:5890145 original size:16 final size:16
Alignment explanation
Indices: 5890124--5890161 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
5890114 ATTTAATTCA
*
5890124 TTTAATTAATTATTTT
1 TTTAATTAAATATTTT
5890140 TTTAATTAAATATTTT
1 TTTAATTAAATATTTT
5890156 TCTTAA
1 T-TTAA
5890162 GCCAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTAATTAAATATTTT
Found at i:5896475 original size:18 final size:18
Alignment explanation
Indices: 5896436--5896486 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
5896426 TGTATATTAT
* **
5896436 TTTTATATTATATACGTT
1 TTTTATATTATATATGCA
5896454 TTTTATATTATATATGCA
1 TTTTATATTATATATGCA
5896472 TTTTACT-TTATATAT
1 TTTTA-TATTATATAT
5896487 TATTTATCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 28 0.97
19 1 0.03
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (18 bp):
TTTTATATTATATATGCA
Found at i:5897229 original size:63 final size:62
Alignment explanation
Indices: 5897089--5897237 Score: 192
Period size: 62 Copynumber: 2.4 Consensus size: 62
5897079 ATCTATGATC
* * * * *
5897089 ATATATGCATAAAATGATAACGTATATTGTGTCATTTATGCCATTATTCATCATTTTTTATT
1 ATATATGCATGAAATGTTAAAGTATATTGTGTCATTTATGCCATTATTCACCATTTTTCATT
* * *
5897151 ATATATGCATGAAATGTTAAAGTATATTGTGTGATTTATGTCA-TATTTACCATTTTCTACATT
1 ATATATGCATGAAATGTTAAAGTATATTGTGTCATTTATGCCATTATTCACCATTTT-T-CATT
*
5897214 ATATTTGCATGAAATGTTAAAGTA
1 ATATATGCATGAAATGTTAAAGTA
5897238 CGTAGTTTAA
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
61 11 0.14
62 39 0.51
63 26 0.34
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.45
Consensus pattern (62 bp):
ATATATGCATGAAATGTTAAAGTATATTGTGTCATTTATGCCATTATTCACCATTTTTCATT
Found at i:5899262 original size:17 final size:17
Alignment explanation
Indices: 5899229--5899263 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
5899219 TTGTTTGTGG
**
5899229 TTTTTATAAAAGTATTA
1 TTTTTATAAAAAAATTA
5899246 TTTTTATAAAAAAATTA
1 TTTTTATAAAAAAATTA
5899263 T
1 T
5899264 GTTAGAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
TTTTTATAAAAAAATTA
Found at i:5899839 original size:280 final size:278
Alignment explanation
Indices: 5899338--5899898 Score: 1059
Period size: 280 Copynumber: 2.0 Consensus size: 278
5899328 TTGCGTATTT
*
5899338 TTATCAAAAAATTAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGTAAAACTAAATTGAT
1 TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGTAAAACTAAATTGAT
5899403 AGAATGTGTGAAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
66 AGAATGTGTGAAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
*
5899468 TATCAATATTTGAGAGTTAAATTTATTATTATGTCAATAGAAAAGTCACCATTAGTGACAGAACC
131 TATCAATATTTAAGAGTTAAATTTATTATTATGTCAATAGAAAAGTCACCATTAGTGACAGAACC
*
5899533 GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATTTACTAATAATTAGGTGAC
196 GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
5899598 TATTTTTATAGTTTGTCTGG
261 --TTTTTATAGTTTGTCTGG
5899618 TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGTAAAACTAAATTGAT
1 TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGTAAAACTAAATTGAT
*
5899683 AGAATGTGTGGAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
66 AGAATGTGTGAAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
*
5899748 TATCAATATTTAAGAGTTAAATTTATTATTATGTCAATAGAAAAGTCACCATTAGTGATAGAACC
131 TATCAATATTTAAGAGTTAAATTTATTATTATGTCAATAGAAAAGTCACCATTAGTGACAGAACC
5899813 GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
196 GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
5899878 TTTTTATAGTTTGTCTGG
261 TTTTTATAGTTTGTCTGG
5899896 TTA
1 TTA
5899899 CCCAAATTTC
Statistics
Matches: 276, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
278 21 0.08
280 255 0.92
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.39
Consensus pattern (278 bp):
TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGTAAAACTAAATTGAT
AGAATGTGTGAAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
TATCAATATTTAAGAGTTAAATTTATTATTATGTCAATAGAAAAGTCACCATTAGTGACAGAACC
GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
TTTTTATAGTTTGTCTGG
Found at i:5908998 original size:40 final size:40
Alignment explanation
Indices: 5908943--5909022 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
5908933 GAATAACAAA
5908943 AACTTACATACACTAGCAAGAGGAAACGATTCACGATAAT
1 AACTTACATACACTAGCAAGAGGAAACGATTCACGATAAT
5908983 AACTTACATACACTAGCAAGAGGAAACGATTCACGATAAT
1 AACTTACATACACTAGCAAGAGGAAACGATTCACGATAAT
5909023 CACATGTCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.20
Consensus pattern (40 bp):
AACTTACATACACTAGCAAGAGGAAACGATTCACGATAAT
Found at i:5909450 original size:18 final size:18
Alignment explanation
Indices: 5909427--5909464 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
5909417 TAAAAAGCAT
*
5909427 AATATACAAAACAGTTTA
1 AATATACAAAACAATTTA
*
5909445 AATATATAAAACAATTTA
1 AATATACAAAACAATTTA
5909463 AA
1 AA
5909465 GTAAGTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.29
Consensus pattern (18 bp):
AATATACAAAACAATTTA
Found at i:5909496 original size:23 final size:22
Alignment explanation
Indices: 5909443--5909497 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 22
5909433 CAAAACAGTT
5909443 TAAATATATAAAACAATTTAAAG
1 TAAATA-ATAAAACAATTTAAAG
* *
5909466 TAAGTAATAAAACTATTTTAGAA-
1 TAAATAATAAAAC-AATTTA-AAG
5909489 TAAATAATA
1 TAAATAATA
5909498 CATAAAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 7 0.26
23 18 0.67
24 2 0.07
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (22 bp):
TAAATAATAAAACAATTTAAAG
Found at i:5914021 original size:26 final size:26
Alignment explanation
Indices: 5913985--5914119 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
5913975 ACATGAATTC
5913985 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
5914011 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
5914037 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
5914063 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
5914088 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
5914114 TTATCA
1 TTATCA
5914120 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 23 0.23
26 79 0.77
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:5919892 original size:26 final size:26
Alignment explanation
Indices: 5919856--5919991 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
5919846 CATGATATTC
5919856 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
5919882 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
5919908 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
5919934 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
5919960 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
5919986 TTATCA
1 TTATCA
5919992 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:5921846 original size:25 final size:25
Alignment explanation
Indices: 5921815--5921874 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
5921805 AAAAGCCTAA
*
5921815 CCAAAAAAAAAAACAAAACCTAACCC
1 CCAAAAAAAAGAA-AAAACCTAACCC
5921841 CCAAAAAAAAGAAAAAACCTAACCC
1 CCAAAAAAAAGAAAAAACCTAACCC
5921866 CCAAAAAAA
1 CCAAAAAAA
5921875 CCTAACCTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 21 0.64
26 12 0.36
ACGTcount: A:0.67, C:0.28, G:0.02, T:0.03
Consensus pattern (25 bp):
CCAAAAAAAAGAAAAAACCTAACCC
Found at i:5921888 original size:17 final size:17
Alignment explanation
Indices: 5921852--5921891 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
5921842 CAAAAAAAAG
**
5921852 AAAAAACCTAACCCCCA
1 AAAAAACCTAACCCAAA
*
5921869 AAAAAACCTAACCTAAA
1 AAAAAACCTAACCCAAA
5921886 AAAAAA
1 AAAAAA
5921892 AAAAAAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.65, C:0.28, G:0.00, T:0.07
Consensus pattern (17 bp):
AAAAAACCTAACCCAAA
Found at i:5924459 original size:12 final size:12
Alignment explanation
Indices: 5924439--5924474 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
5924429 AGTCATTTGA
5924439 CATTCATGCATT
1 CATTCATGCATT
*
5924451 CATTTATGCATT
1 CATTCATGCATT
*
5924463 CATTCATTCATT
1 CATTCATGCATT
5924475 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:5931351 original size:68 final size:70
Alignment explanation
Indices: 5931186--5931359 Score: 228
Period size: 71 Copynumber: 2.5 Consensus size: 70
5931176 CTTTTCAAGG
* *
5931186 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTGTTG
5931251 TTTTCA
66 TTTT-A
* * * *
5931257 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTTAGTT-TAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTGT-T
5931320 GTTTT-
65 GTTTTA
** *
5931325 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
5931360 TTTAATTTTT
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
68 31 0.34
69 1 0.01
70 26 0.28
71 34 0.37
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (70 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTGTTG
TTTTA
Found at i:5931482 original size:71 final size:71
Alignment explanation
Indices: 5931359--5932240 Score: 273
Period size: 74 Copynumber: 12.3 Consensus size: 71
5931349 GAGTTAAGCC
* ** * *
5931359 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTCTG-TTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
5931423 TGAGGTA
65 TGAGGTA
* *
5931430 TTTTCAATTT-TGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTCTGT-TTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
5931494 TGAGGTA
65 TGAGGTA
* * * * ** * *** * *
5931501 TTTTCAATTTCTGTTTTCAATTT--ACGT--TGTT-CAAGA-ATCAACTCATATTGCA-AG-AAG
1 TTTTCAATTTCTGTTTTCAATTTCAAC-TCATATTGCGAGAGGTGAGTTGAGCCT-CAGGGCACG
5931558 -TG-GGTTGAA
64 CTGAGG-T--A
* ** * * *
5931567 CCTTTT-AATTTCTACTTTTCAAAATCAGCTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCAC
1 --TTTTCAATTTCT-GTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
5931631 GCTGAGGTA
63 GCTGAGGTA
* * * * ** * *** * ***
5931640 TTTTCAATTTCTGTTTTCAATTT--ACGT--TGTT-CAAGA-ATCAACTCATATTGCGAGAGTGG
1 TTTTCAATTTCTGTTTTCAATTTCAAC-TCATATTGCGAGAGGTGAGTTGAGCCT-C-AGGGCAC
* ***
5931699 GTTGA-ACC
63 GCTGAGGTA
* ** * *
5931707 TTTT-AATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACG
1 TTTTCAATTTCT--GTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
5931771 CTGAGGTA
64 CTGAGGTA
** * * * * ** * *** ***
5931779 TTTTCAATTT-TGTTTTCAATTT--A-TGTTGTT-CAAGA-ATCAACTCATATTGCGAGAGGTGG
1 TTTTCAATTTCTGTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCT-C-AG-GGCAC
* ***
5931838 GTTGA-ACC
63 GCTGAGGTA
* ** * **
5931846 TTTT-AATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTCACA
1 TTTTCAATTTCT--GTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC-
5931910 TGCTGAGGTA
63 -GCTGAGGTA
* ** * *
5931920 TTTTCAATTTCTGTCTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
1 TTTTCAATTTCTGT-TTTC-----AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG
*
5931985 CACGTTGAGGTA
60 CACGCTGAGGTA
* * * ** * ** * *
5931997 ATTTCAATTTATTTTTTCAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCA-GACAT
1 TTTTCAATTTCTGTTTTC---AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
5932061 GCTGAGGTA
63 GCTGAGGTA
** *
5932070 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTTC---AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
5932135 GCTGAGGTA
63 GCTGAGGTA
* * ** * * * *
5932144 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCAC
1 TTTTCAATTTCTGTTTTC---AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--GC
*
5932209 ACGCCGA-GTA
61 ACGCTGAGGTA
5932219 -TTTCAATTTCT-TTTTCAATTTC
1 TTTTCAATTTCTGTTTTCAATTTC
5932241 TGCCTTTCAA
Statistics
Matches: 588, Mismatches: 164, Indels: 119
0.68 0.19 0.14
Matches are distributed among these distances:
63 2 0.00
64 3 0.01
65 7 0.01
66 28 0.05
67 33 0.06
68 37 0.06
69 13 0.02
70 17 0.03
71 99 0.17
72 37 0.06
73 95 0.16
74 134 0.23
75 13 0.02
76 14 0.02
77 19 0.03
79 37 0.06
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (71 bp):
TTTTCAATTTCTGTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:5931625 original size:139 final size:140
Alignment explanation
Indices: 5931456--5931940 Score: 877
Period size: 139 Copynumber: 3.5 Consensus size: 140
5931446 TTAATTTCAA
5931456 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
5931521 TTTACGTTGTTCAAGAATCAACTCATATTGCAAGAAGTGGGTTGAACCTTTTAATTTCTAC-TTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
5931585 TCAAAATCAG
131 TCAAAATCAG
*
5931595 CTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
5931660 TTTACGTTGTTCAAGAATCAACTCATATTGCGAG-AGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
5931724 TCAAAATCAG
131 TCAAAATCAG
5931734 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT-TGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
5931798 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
5931863 TCAAAATCAG
131 TCAAAATCAG
*
5931873 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC--GCTGAGGTATTTTCAATTTCTGT-TTT
5931938 CAA
63 CAA
5931941 AAAAAATTCA
Statistics
Matches: 334, Mismatches: 6, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
138 68 0.20
139 238 0.71
141 19 0.06
142 3 0.01
143 6 0.02
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:5931796 original size:12 final size:13
Alignment explanation
Indices: 5931779--5931811 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
5931769 CGCTGAGGTA
5931779 TTTTCAATTT-TG
1 TTTTCAATTTATG
5931791 TTTTCAATTTATG
1 TTTTCAATTTATG
5931804 TTGTTCAA
1 TT-TTCAA
5931812 GAATCAACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 10 0.53
13 4 0.21
14 5 0.26
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.61
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:5932078 original size:73 final size:73
Alignment explanation
Indices: 5931865--5932236 Score: 462
Period size: 74 Copynumber: 5.0 Consensus size: 73
5931855 CTACTTTTTC
* * *
5931865 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTCACATGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG---ACACGCTGAGGTAATTTCAATTT
5931930 CTGTCTTTCAAAA
63 CTGT-TTTC-AAA
** * *
5931943 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTA
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTAATTTCAATTTC
*
5932008 TTTTTTCAAA
64 TGTTTTCAAA
* ** * *
5932018 AAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAGACATGCTGAGGTATTTTCAATTTCTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTCTG
5932083 TTTTCAAA
66 TTTTCAAA
5932091 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTTCT
*
5932156 GTTGTCAAA
65 GTTTTCAAA
* * * *
5932165 AAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGA-GT-ATTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G--ACACGCTGAGGTAATTTCAATTT
5932228 CT-TTTTCAA
63 CTGTTTTCAA
5932237 TTTCTGCCTT
Statistics
Matches: 264, Mismatches: 25, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
73 72 0.27
74 113 0.43
75 9 0.03
76 12 0.05
77 22 0.08
78 4 0.02
79 30 0.11
80 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTCTG
TTTTCAAA
Found at i:5932141 original size:147 final size:149
Alignment explanation
Indices: 5931865--5932531 Score: 606
Period size: 147 Copynumber: 4.2 Consensus size: 149
5931855 CTACTTTTTC
*
5931865 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTCACATGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-T-ACATGCTGAGGTATTTTCAATTT
** * *
5931930 CTGTCTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
64 CTGT-TTTCAAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
5931995 TAATTTCAATTTATTTTTTCAAA
127 TAATTTCAATTTATTTTTTCAAA
* **
5932018 AAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAG-ACATGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTACATGCTGAGGTATTTTCAATTTCT
5932082 GTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
66 GTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
* * *
5932146 TTCAATTTCTGTTGTCAAA
131 TTCAATTTATTTTTTCAAA
* * * * * *
5932165 AAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGTATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GT-ACATGCTGAG---GT--A-----
* *
5932230 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
54 TTTTCAATTTCTG-TTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--
* * *
5932295 CACACACTGAGGTATTTTTTCAATTTATATTTTTCAAA
115 GACACGCTGAGGTA--ATTTCAATTTAT-TTTTTCAAA
* * ** **
5932333 AAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTTGGGTCACATG-TCGAGGTATTTTCAAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGT-ACATGCT-GAGGTATTTTCAATT
* * *
5932397 T-TGTTTTTCAAATTCTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTC
63 TCTG-TTTTCAAA--------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
* * * *
5932460 ATGTACTGAGCTATTTTCAATTTCTTGTTTTTTCAAA
118 ACG--CTGAGGTAATTTCAA--T-TTATTTTTTCAAA
5932497 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
5932532 TTTTTAATTT
Statistics
Matches: 425, Mismatches: 51, Indels: 64
0.79 0.09 0.12
Matches are distributed among these distances:
147 97 0.23
148 8 0.02
149 4 0.01
150 35 0.08
153 36 0.08
155 1 0.00
156 3 0.01
157 6 0.01
158 8 0.02
160 13 0.03
161 4 0.01
162 9 0.02
163 43 0.10
164 56 0.13
165 44 0.10
167 10 0.02
168 47 0.11
169 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (149 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTACATGCTGAGGTATTTTCAATTTCT
GTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
TTCAATTTATTTTTTCAAA
Found at i:5932352 original size:79 final size:74
Alignment explanation
Indices: 5932251--5932531 Score: 190
Period size: 79 Copynumber: 3.5 Consensus size: 74
5932241 TGCCTTTCAA
* *
5932251 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--CACACGCTGAGGTA--TTTTC
5932316 AATTTATATTTTTC
62 AATTTAT-TTTTTC
* * ** *
5932330 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTTGGGTCACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAG-CACACGCT-GAGGTATTTTC-
5932394 AAATTGTTTTTCAAATTCTTTTC
62 -AA-----TTT---ATT-TTTTC
* ** * * *
5932417 --AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCATGTACTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACG--CTGAGGTATTTTCAA
*
5932480 TTTCTTGTTTTTTC
64 --T-TTATTTTTTC
5932494 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
5932532 TTTTTAATTT
Statistics
Matches: 168, Mismatches: 14, Indels: 39
0.76 0.06 0.18
Matches are distributed among these distances:
77 10 0.06
78 3 0.02
79 53 0.32
80 34 0.20
81 2 0.01
83 7 0.04
84 6 0.04
85 44 0.26
86 2 0.01
87 7 0.04
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (74 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTATTTTCAATT
TATTTTTTC
Found at i:5932549 original size:30 final size:29
Alignment explanation
Indices: 5932513--5932572 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
5932503 CAACTCATAT
*
5932513 TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAG-TCTTTAATTTC
*
5932543 TGCGAGAGTTGAGTTGAGTCTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTAATTTC
5932572 T
1 T
5932573 ATTTTTCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.42
Consensus pattern (29 bp):
TGCGAGAGGTGAGTTGAGTCTTTAATTTC
Found at i:5933415 original size:17 final size:19
Alignment explanation
Indices: 5933393--5933475 Score: 91
Period size: 18 Copynumber: 4.4 Consensus size: 19
5933383 TAAGCCCCCC
5933393 AAAAAAACCTAA-CC-AAA
1 AAAAAAACCTAACCCAAAA
5933410 AAAAAAACCTAACCCAAAAAA
1 AAAAAAACCTAACCC--AAAA
**
5933431 AGAAAAAACCTAACCC-CCA
1 A-AAAAAACCTAACCCAAAA
*
5933450 AAAAAAACCTAACCTAAAA
1 AAAAAAACCTAACCCAAAA
5933469 AAAAAAA
1 AAAAAAA
5933476 AAAAAAAGAA
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
17 12 0.22
18 15 0.27
19 10 0.18
21 4 0.07
22 14 0.25
ACGTcount: A:0.69, C:0.24, G:0.01, T:0.06
Consensus pattern (19 bp):
AAAAAAACCTAACCCAAAA
Found at i:5933453 original size:40 final size:39
Alignment explanation
Indices: 5933393--5933478 Score: 127
Period size: 40 Copynumber: 2.2 Consensus size: 39
5933383 TAAGCCCCCC
5933393 AAAAAAACCTAACCAAAAAAAAAACCTAACCCAAAAAAA
1 AAAAAAACCTAACCAAAAAAAAAACCTAACCCAAAAAAA
* ** *
5933432 GAAAAAACCTAACCCCCAAAAAAAACCTAACCTAAAAAAA
1 AAAAAAACCTAA-CCAAAAAAAAAACCTAACCCAAAAAAA
5933472 AAAAAAA
1 AAAAAAA
5933479 AAAAGAAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 11 0.27
40 30 0.73
ACGTcount: A:0.70, C:0.23, G:0.01, T:0.06
Consensus pattern (39 bp):
AAAAAAACCTAACCAAAAAAAAAACCTAACCCAAAAAAA
Found at i:5933478 original size:22 final size:22
Alignment explanation
Indices: 5933398--5933478 Score: 71
Period size: 22 Copynumber: 3.9 Consensus size: 22
5933388 CCCCCAAAAA
**
5933398 AACCTAACCAAAAAAAAAACCT
1 AACCTAAAAAAAAAAAAAACCT
* *
5933420 AACCCAAAAAAAGAAAAAACCT
1 AACCTAAAAAAAAAAAAAACCT
***
5933442 AACC----CCCAAAAAAAACCT
1 AACCTAAAAAAAAAAAAAACCT
5933460 AACCTAAAAAAAAAAAAAA
1 AACCTAAAAAAAAAAAAAA
5933479 AAAAGAAAAA
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
18 14 0.32
22 30 0.68
ACGTcount: A:0.68, C:0.25, G:0.01, T:0.06
Consensus pattern (22 bp):
AACCTAAAAAAAAAAAAAACCT
Found at i:5934147 original size:23 final size:23
Alignment explanation
Indices: 5934108--5934165 Score: 82
Period size: 23 Copynumber: 2.5 Consensus size: 23
5934098 TATATTAGTG
5934108 TATATTTTATGTACATA-CATTAT
1 TATATTTT-TGTACATATCATTAT
5934131 ATATATTTTTGTACATATCATTAT
1 -TATATTTTTGTACATATCATTAT
*
5934155 TATATTATTGT
1 TATATTTTTGT
5934166 TGTAAATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
23 18 0.56
24 14 0.44
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (23 bp):
TATATTTTTGTACATATCATTAT
Found at i:5939070 original size:26 final size:26
Alignment explanation
Indices: 5939041--5939148 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
5939031 CATTTACCTC
*
5939041 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
5939067 TTATCATGGAACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCCA
5939092 TTATCAT-GAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
5939117 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
5939143 TTATCA
1 TTATCA
5939149 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
24 14 0.18
25 20 0.26
26 44 0.56
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:5939109 original size:50 final size:52
Alignment explanation
Indices: 5939036--5939148 Score: 203
Period size: 50 Copynumber: 2.2 Consensus size: 52
5939026 CATGACATTT
*
5939036 ACCTCTTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTA
1 ACCTATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTA
5939088 ACC-ATTATCATG-AACATTTACCTAACCCATTATCATGGAACATTTACCTA
1 ACCTATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTA
5939138 ACCTATTATCA
1 ACCTATTATCA
5939149 ATTTGTATCA
Statistics
Matches: 59, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
50 41 0.69
51 15 0.25
52 3 0.05
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.33
Consensus pattern (52 bp):
ACCTATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTA
Found at i:5942237 original size:205 final size:205
Alignment explanation
Indices: 5941885--5942674 Score: 1352
Period size: 205 Copynumber: 3.9 Consensus size: 205
5941875 GTAATAGGCC
* *
5941885 ACACATAGCAGATCTCGCCTTCAGACGATTTCA--CTGAAGCAGATCCAAGATGGTTTGGCATCC
1 ACACATAGCAGATCTCACCTTCAGATG-TTT-ATGCTGAAGCAGATCCAAGATGGTTTGGCATCC
5941948 TTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCA
64 TTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCA
5942013 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
129 AATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT
5942078 GATGGAGAGCAG
194 GATGGAGAGCAG
*
5942090 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
5942155 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
5942220 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
5942285 TGGAGAGCAG
196 TGGAGAGCAG
5942295 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
5942360 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
5942425 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
5942490 TGGAGAGCAG
196 TGGAGAGCAG
* * *
5942500 ACACATAGCAGATCTCACCTTCGGATGTTTATGCTGAAGCGGATCCAAGATGGATTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
* * * * ** * * *
5942565 ATGCTTACAAGGAACAAATCGAA-TCATAGTTGATTTGGCTTTCGCGTGCTTACGTTAAAGCAAA
66 GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
* * * * * *
5942629 TCTAAGATGATTTGGCATCTCTGTATTGTCAGGGATCAAATCGAAG
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAG
5942675 AAATAAATCT
Statistics
Matches: 561, Mismatches: 22, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
203 1 0.00
204 77 0.14
205 483 0.86
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (205 bp):
ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
GTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
TGGAGAGCAG
Found at i:5942806 original size:44 final size:43
Alignment explanation
Indices: 5942728--5942813 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 43
5942718 GATTTCAGCA
* *
5942728 TGGCATCCCTGTGTTTATAAGGAGCAAGTTGAAGACAGCAGATT
1 TGGCATCCCTGTGTTTATAAGGAACAAGTCGAAGA-AGCAGATT
**
5942772 TGGCATCCCTGTGTTTATGGGGAAC-AGATCGAAGAAGCAGAT
1 TGGCATCCCTGTGTTTATAAGGAACAAG-TCGAAGAAGCAGAT
5942814 CAAGAACTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 9 0.24
44 28 0.76
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (43 bp):
TGGCATCCCTGTGTTTATAAGGAACAAGTCGAAGAAGCAGATT
Found at i:5943271 original size:22 final size:24
Alignment explanation
Indices: 5943245--5943293 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
5943235 TATTTTGGAG
5943245 AGAAGA-A-ATTTTTTGAGATTCA
1 AGAAGAGATATTTTTTGAGATTCA
*
5943267 AGAAGAGATTTTTTTTGAGATTCA
1 AGAAGAGATATTTTTTGAGATTCA
5943291 AGA
1 AGA
5943294 GGGGATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 6 0.25
23 1 0.04
24 17 0.71
ACGTcount: A:0.39, C:0.04, G:0.20, T:0.37
Consensus pattern (24 bp):
AGAAGAGATATTTTTTGAGATTCA
Found at i:5943285 original size:24 final size:24
Alignment explanation
Indices: 5943253--5943303 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
5943243 AGAGAAGAAA
5943253 TTTTTTGAGATTCAAGAAGAGATT
1 TTTTTTGAGATTCAAGAAGAGATT
* *
5943277 TTTTTTGAGATTCAAGAGGGGATT
1 TTTTTTGAGATTCAAGAAGAGATT
5943301 TTT
1 TTT
5943304 CTTTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.04, G:0.24, T:0.45
Consensus pattern (24 bp):
TTTTTTGAGATTCAAGAAGAGATT
Found at i:5943302 original size:21 final size:22
Alignment explanation
Indices: 5943245--5943303 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 22
5943235 TATTTTGGAG
*
5943245 AGAAGAAATTTTTTGAGATTCA
1 AGAAGAGATTTTTTGAGATTCA
5943267 AGAAGAGATTTTTTTTGAGATTCA
1 AGAAGAGA--TTTTTTGAGATTCA
* *
5943291 AGAGGGGATTTTT
1 AGAAGAGATTTTT
5943304 CTTTTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
24 20 0.62
ACGTcount: A:0.34, C:0.03, G:0.24, T:0.39
Consensus pattern (22 bp):
AGAAGAGATTTTTTGAGATTCA
Found at i:5943790 original size:3 final size:3
Alignment explanation
Indices: 5943782--5943816 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
5943772 TGCATTTTAA
5943782 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
5943817 GTGTATATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:5943918 original size:3 final size:3
Alignment explanation
Indices: 5943910--5943945 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
5943900 TGTATTTCTA
5943910 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
5943946 ATGGTAGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:5944071 original size:16 final size:15
Alignment explanation
Indices: 5944040--5944082 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
5944030 CCTTCATTCC
*
5944040 ATTATTATTATTACT
1 ATTATTATTTTTACT
5944055 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
5944071 ATCATTATTTTT
1 ATTATTATTTTT
5944083 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:5944207 original size:16 final size:16
Alignment explanation
Indices: 5944186--5944217 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
5944176 CTATTGTTAC
5944186 TGTTATTATCATCACT
1 TGTTATTATCATCACT
*
5944202 TGTTATTCTCATCACT
1 TGTTATTATCATCACT
5944218 ATTATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (16 bp):
TGTTATTATCATCACT
Found at i:5944259 original size:11 final size:13
Alignment explanation
Indices: 5944229--5944260 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
5944219 TTATTATAAT
5944229 TTATTATTGTTAC
1 TTATTATTGTTAC
5944242 TTATTATT-TTAC
1 TTATTATTGTTAC
5944254 -TATTATT
1 TTATTATT
5944261 ATCTAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.37
12 4 0.21
13 8 0.42
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (13 bp):
TTATTATTGTTAC
Found at i:5944474 original size:22 final size:22
Alignment explanation
Indices: 5944444--5944504 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
5944434 TTATTATATC
*
5944444 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
5944466 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
5944488 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
5944505 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:5944478 original size:3 final size:3
Alignment explanation
Indices: 5944217--5944459 Score: 87
Period size: 3 Copynumber: 82.3 Consensus size: 3
5944207 TTCTCATCAC
* * *
5944217 TAT TAT TAT AATT TAT TAT TGT TACT TAT TAT T-T TAC TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
5944263 CTAA TA- TAT CAT CAT TAT CAT TAT T-T TCAT TAT AACT TAA TA- GAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
* *
5944308 CAT CA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
5944354 CAC TACT T-T TAT TAC TAT TAT T-T AAT ATAT TAT TTT TAC TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
** * * * * *
5944399 CGT CA- TAT TGT TAC TAT TAC TAT TA- TAT TAT TA- TGT TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
5944443 CTTT TAC TAT TAT TAT T
1 -TAT TAT TAT TAT TAT T
5944460 GTTGTATTTT
Statistics
Matches: 176, Mismatches: 44, Indels: 40
0.68 0.17 0.15
Matches are distributed among these distances:
2 18 0.10
3 142 0.81
4 16 0.09
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:5948481 original size:22 final size:22
Alignment explanation
Indices: 5948456--5948497 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
5948446 TATTAATACC
*
5948456 ATAATAAAATAA-TATATGTATA
1 ATAA-AAAATAACAATATGTATA
5948478 ATAAAAAATAACAATATGTA
1 ATAAAAAATAACAATATGTA
5948498 CAAAAAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (22 bp):
ATAAAAAATAACAATATGTATA
Found at i:5948533 original size:3 final size:3
Alignment explanation
Indices: 5948519--5948610 Score: 50
Period size: 3 Copynumber: 30.3 Consensus size: 3
5948509 ATGTATACCA
* * *
5948519 AAT AAT ACAT AAT AAT ATT AA- AAT AA- AAT AAT AAGT AAC AAT AGT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
* *
5948564 GAA- AAT AAT AAGT -AT AAT AAT AA- ATAT AAT GAT ATAT AAA AAT AAT
1 -AAT AAT AAT AA-T AAT AAT AAT AAT A-AT AAT AAT A-AT AAT AAT AAT
5948610 A
1 A
5948611 CTATATATAA
Statistics
Matches: 68, Mismatches: 10, Indels: 22
0.68 0.10 0.22
Matches are distributed among these distances:
2 8 0.12
3 48 0.71
4 12 0.18
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:5948561 original size:26 final size:27
Alignment explanation
Indices: 5948518--5948571 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
5948508 TATGTATACC
* *
5948518 AAATAATACATAATAATA-TTAAAATA
1 AAATAATACATAACAATAGTGAAAATA
5948544 AAATAATA-AGTAACAATAGTGAAAATA
1 AAATAATACA-TAACAATAGTGAAAATA
5948571 A
1 A
5948572 TAAGTATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.04
26 15 0.62
27 8 0.33
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.26
Consensus pattern (27 bp):
AAATAATACATAACAATAGTGAAAATA
Found at i:5948582 original size:12 final size:12
Alignment explanation
Indices: 5948567--5948676 Score: 54
Period size: 12 Copynumber: 9.3 Consensus size: 12
5948557 CAATAGTGAA
*
5948567 AATAATAAGTAT
1 AATAATAAATAT
5948579 AATAATAAATAT
1 AATAATAAATAT
*
5948591 AATGAT--ATAT
1 AATAATAAATAT
*
5948601 AAAAATAATACTAT
1 AATAATAA-A-TAT
*
5948615 ATATAA-AAGTAT
1 A-ATAATAAATAT
* **
5948627 -ATATATACACGT
1 AATA-ATAAATAT
5948639 -ATAATAAATAT
1 AATAATAAATAT
*
5948650 -ATACT-AATATT
1 AATAATAAATA-T
5948661 AATAATAAATAT
1 AATAATAAATAT
5948673 AATA
1 AATA
5948677 GGGGTAAAAA
Statistics
Matches: 73, Mismatches: 15, Indels: 20
0.68 0.14 0.19
Matches are distributed among these distances:
10 15 0.21
11 11 0.15
12 33 0.45
13 5 0.07
14 6 0.08
15 3 0.04
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:5948606 original size:18 final size:17
Alignment explanation
Indices: 5948565--5948633 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 17
5948555 AACAATAGTG
5948565 AAAATAATAAGTATA-ATA
1 AAAAT-ATAA-TATATATA
5948583 ATAAATATAATGATATATA
1 A-AAATATAAT-ATATATA
*
5948602 AAAATAATACTATATATA
1 AAAAT-ATAATATATATA
*
5948620 AAAGTAT-ATATATA
1 AAAATATAATATATA
5948634 CACGTATAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
16 6 0.14
17 3 0.07
18 23 0.52
19 12 0.27
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (17 bp):
AAAATATAATATATATA
Found at i:5948673 original size:40 final size:40
Alignment explanation
Indices: 5948576--5948674 Score: 98
Period size: 42 Copynumber: 2.4 Consensus size: 40
5948566 AAATAATAAG
*
5948576 TATAATAATAAATATAATGATATATAAAAATAATACTATA
1 TATAATAATAAATATAACGATATATAAAAATAATACTATA
*
5948616 TATAA-AAGTATATATATACACG-TATA-ATAAATATATACTA-A
1 TATAATAA-TA-A-ATATA-ACGATATATAAAAATA-ATACTATA
5948657 TATTAATAATAAATATAA
1 TA-TAATAATAAATATAA
5948675 TAGGGGTAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
39 3 0.06
40 12 0.24
41 11 0.22
42 20 0.40
43 4 0.08
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (40 bp):
TATAATAATAAATATAACGATATATAAAAATAATACTATA
Found at i:5948779 original size:77 final size:71
Alignment explanation
Indices: 5948690--5948846 Score: 174
Period size: 77 Copynumber: 2.1 Consensus size: 71
5948680 GTAAAAATAG
* * * *
5948690 ATATAATAATATGTACAT-AATATAGTGTTAAAAGTACAT-ACATAATATAGTTATTAAAAAAAT
1 ATATAAAAATATGTACATGAA-ATAGTATAAAAAATACATAAC-TAATA-A--TATT--AAAAAT
5948753 ATATACATAAGAT
59 ATATACATAAGAT
*
5948766 AATATAAAAATATGTACATGAAATAGTATAAAAAATATATAACTAATAATATTAAAAATATATAC
1 -ATATAAAAATATGTACATGAAATAGTATAAAAAATACATAACTAATAATATTAAAAATATATAC
*
5948831 ATAATAT
65 ATAAGAT
5948838 ATATAAAAA
1 ATATAAAAA
5948847 CATATACAAT
Statistics
Matches: 72, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
71 9 0.12
72 18 0.25
74 4 0.06
76 1 0.01
77 36 0.50
78 4 0.06
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.32
Consensus pattern (71 bp):
ATATAAAAATATGTACATGAAATAGTATAAAAAATACATAACTAATAATATTAAAAATATATACA
TAAGAT
Found at i:5948799 original size:25 final size:25
Alignment explanation
Indices: 5948746--5948852 Score: 109
Period size: 24 Copynumber: 4.4 Consensus size: 25
5948736 ATAGTTATTA
5948746 AAAAAATATATACATAAGATAATAT
1 AAAAAATATATACATAAGATAATAT
* *
5948771 -AAAAATATGTACATGAA-ATAGTAT
1 AAAAAATATATACAT-AAGATAATAT
5948795 AAAAAATATATA-ACT-A-ATAATAT
1 AAAAAATATATACA-TAAGATAATAT
* *
5948818 TAAAAATATATACATAATAT-ATAT
1 AAAAAATATATACATAAGATAATAT
5948842 AAAAACATATA
1 AAAAA-ATATA
5948853 CAATATATAT
Statistics
Matches: 69, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
23 19 0.28
24 30 0.43
25 20 0.29
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.30
Consensus pattern (25 bp):
AAAAAATATATACATAAGATAATAT
Found at i:5948853 original size:23 final size:23
Alignment explanation
Indices: 5948685--5948863 Score: 125
Period size: 23 Copynumber: 7.4 Consensus size: 23
5948675 TAGGGGTAAA
* * *
5948685 AATAGATATAATAATATGTACAT
1 AATATATATAAAAATATATACAT
* * *
5948708 AATATAGTGTTAAAAGTACATACAT
1 AATATA-T-ATAAAAATATATACAT
5948733 AATATAGTTATTAAAAAAATATATACAT
1 AATATA--TA-T--AAAAATATATACAT
* *
5948761 AAGATAATATAAAAATATGTACAT
1 AATAT-ATATAAAAATATATACAT
5948785 GAA-ATAGTATAAAAAATATATA-ACT
1 -AATATA-TAT-AAAAATATATACA-T
5948810 AATA-ATATTAAAAATATATACAT
1 AATATATA-TAAAAATATATACAT
*
5948833 AATATATATAAAAACATATAC--
1 AATATATATAAAAATATATACAT
5948854 AATATATATA
1 AATATATATA
5948864 CATATTAGAA
Statistics
Matches: 127, Mismatches: 14, Indels: 32
0.73 0.08 0.18
Matches are distributed among these distances:
21 10 0.08
23 36 0.28
24 28 0.22
25 31 0.24
26 3 0.02
27 2 0.02
28 16 0.13
29 1 0.01
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.32
Consensus pattern (23 bp):
AATATATATAAAAATATATACAT
Found at i:5948965 original size:3 final size:3
Alignment explanation
Indices: 5948957--5948996 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
5948947 AGTGAAAATC
5948957 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
5948997 TATATGCATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:5949100 original size:15 final size:15
Alignment explanation
Indices: 5949036--5949102 Score: 52
Period size: 15 Copynumber: 4.5 Consensus size: 15
5949026 CATTTAAAAA
*
5949036 ATATAACTAT-ATAT
1 ATATAACAATAATAT
*
5949050 AATATAATAATAATA-
1 -ATATAACAATAATAT
5949065 ATATCAA-AATAATAGT
1 ATAT-AACAATAATA-T
*
5949081 -GATAACAATAATAT
1 ATATAACAATAATAT
5949095 ATATAACA
1 ATATAACA
5949103 TGAATAATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
14 14 0.33
15 25 0.60
16 3 0.07
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.33
Consensus pattern (15 bp):
ATATAACAATAATAT
Found at i:5950234 original size:22 final size:21
Alignment explanation
Indices: 5950202--5950250 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
5950192 GGTTAGTTTA
* *
5950202 GGTATTGGGTTATGGGTTTAAG
1 GGTAATGGGTTACGGG-TTAAG
*
5950224 TGTAATGGGTTACGGGTTAAG
1 GGTAATGGGTTACGGGTTAAG
5950245 GGTAAT
1 GGTAAT
5950251 TAGTTTTGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.22, C:0.02, G:0.39, T:0.37
Consensus pattern (21 bp):
GGTAATGGGTTACGGGTTAAG
Found at i:5950407 original size:25 final size:25
Alignment explanation
Indices: 5950376--5950423 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
5950366 TCTTTACTCA
*
5950376 TTGTCGTGTCACGAGAACAGAGTTG
1 TTGTCGTGTAACGAGAACAGAGTTG
*
5950401 TTGTCGTGTAACGAGAATAGAGT
1 TTGTCGTGTAACGAGAACAGAGT
5950424 AAAGACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.31, T:0.29
Consensus pattern (25 bp):
TTGTCGTGTAACGAGAACAGAGTTG
Found at i:5951109 original size:73 final size:73
Alignment explanation
Indices: 5950922--5951156 Score: 292
Period size: 73 Copynumber: 3.1 Consensus size: 73
5950912 GAAAAGGTAA
* * *
5950922 AAATTGAAAATACCTTAGTGTGTGACCGAAGACTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGTGACCG-AGACTCAACTCACCTCTCGCAATATGAGTTGA-TTT
*
5950987 TTATGAAAAAT
64 TT-TGAAACAT
* * * *
5950998 AGAAATTAAAAATACCTCATCGTGTGACCCGAGGCTCAACTCACCTCTCGCGATATGAGTTGA-T
1 --AAATTGAAAATACCTCAGCGTGTGA-CCGAGACTCAACTCACCTCTCGCAATATGAGTTGATT
5951062 TTTTGAAACAT
63 TTTTGAAACAT
*
5951073 AAATTGAAAATACCTCAGCGTGTGACCTGAGACTCAACTCACCTCTCGCAATATGAATTGATTTT
1 AAATTGAAAATACCTCAGCGTGTGACC-GAGACTCAACTCACCTCTCGCAATATGAGTTGA--TT
*
5951138 TTTTTAAACAT
63 TTTTGAAACAT
5951149 AAATTGAA
1 AAATTGAA
5951157 GAACAGAAAT
Statistics
Matches: 138, Mismatches: 14, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
72 2 0.01
73 53 0.38
75 7 0.05
76 23 0.17
78 50 0.36
79 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (73 bp):
AAATTGAAAATACCTCAGCGTGTGACCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TGAAACAT
Found at i:5951213 original size:88 final size:88
Alignment explanation
Indices: 5951067--5951329 Score: 336
Period size: 88 Copynumber: 2.9 Consensus size: 88
5951057 TTGATTTTTG
* * *
5951067 AAACATAAATTGAAAATACCTCAGCGTGTGACCTGAGACTCAACTCACCTCTCGCAATATGAATT
1 AAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
5951132 GATTTTTTTTTAAACATAAATTGAA
64 GATTTTTTTTTAAACAGAAATTGAA
*
5951157 GAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
****
5951221 A--TTTTGACGAACAGAAATTGAA
65 ATTTTTTTTTAAACAGAAATTGAA
*
5951243 AAACAGAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
5951307 TGATTTTTTTTTACGAACAGAAA
63 TGATTTTTTTTTA--AACAGAAA
5951330 CTAAAATTAC
Statistics
Matches: 149, Mismatches: 15, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
86 35 0.23
87 4 0.03
88 70 0.47
89 6 0.04
90 26 0.17
92 8 0.05
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (88 bp):
AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTTTAAACAGAAATTGAA
Found at i:5951247 original size:14 final size:14
Alignment explanation
Indices: 5951230--5951258 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
5951220 GATTTTGACG
5951230 AACAGAAATTGAAA
1 AACAGAAATTGAAA
5951244 AACAGAAATTGAAA
1 AACAGAAATTGAAA
5951258 A
1 A
5951259 TACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:5951431 original size:75 final size:73
Alignment explanation
Indices: 5951244--5951556 Score: 409
Period size: 75 Copynumber: 4.2 Consensus size: 73
5951234 GAAATTGAAA
*
5951244 AACAGAAATTGAAAA-TACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGT
1 AACAGAAATT-AAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
5951307 TGATTTTTTTTTACG
62 TGA--TTTTTTGA-G
* *
5951322 AACAGAAACTAAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
5951387 TTTTTAGATG
66 TTTTT-GA-G
*
5951397 AACAGAAGTTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
5951462 TTTTTGAA
66 TTTTTGAG
* *
5951470 AGACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 A-ACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
5951534 A-TTTTTGAA
64 ATTTTTTGAG
*
5951543 AACAGAAATAAAAA
1 AACAGAAATTAAAA
5951557 CATCAGAATA
Statistics
Matches: 218, Mismatches: 12, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
71 4 0.02
72 8 0.04
73 10 0.05
74 63 0.29
75 75 0.34
76 36 0.17
77 4 0.02
78 18 0.08
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.28
Consensus pattern (73 bp):
AACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTGAG
Found at i:5952683 original size:3 final size:3
Alignment explanation
Indices: 5952664--5952717 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
5952654 AATGTAAGAG
* * * * *
5952664 AAT AAT AA- AAG ATT AAT AAT AAT TAT AAT AGT AAA AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
5952711 AAT AAT A
1 AAT AAT A
5952718 GCTAAGTGGG
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:5952829 original size:15 final size:15
Alignment explanation
Indices: 5952809--5952839 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
5952799 ATATATATTA
5952809 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
5952824 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
5952839 A
1 A
5952840 GAAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (15 bp):
ATAATAGTAATAAAT
Found at i:5952962 original size:6 final size:6
Alignment explanation
Indices: 5952953--5952992 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
5952943 CAGTAGTAGT
5952953 AATAAA AATAAA AAT-AA AATAAA AATAAA AATAAA AATAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAA
5952993 TAGTAATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.15
6 28 0.85
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:5952973 original size:11 final size:11
Alignment explanation
Indices: 5952957--5952992 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
5952947 AGTAGTAATA
5952957 AAAATAAAAAT
1 AAAATAAAAAT
5952968 AAAATAAAAAT
1 AAAATAAAAAT
5952979 AAAAATAAAAAT
1 -AAAATAAAAAT
5952991 AA
1 AA
5952993 TAGTAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:5952975 original size:17 final size:17
Alignment explanation
Indices: 5952953--5952988 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
5952943 CAGTAGTAGT
5952953 AATAAAAATAAAAATAA
1 AATAAAAATAAAAATAA
5952970 AATAAAAATAAAAATAA
1 AATAAAAATAAAAATAA
5952987 AA
1 AA
5952989 ATAATAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (17 bp):
AATAAAAATAAAAATAA
Found at i:5953000 original size:21 final size:21
Alignment explanation
Indices: 5952931--5953024 Score: 89
Period size: 21 Copynumber: 4.4 Consensus size: 21
5952921 GAAAATATGT
* * *
5952931 TAATAAAAATAACAGTAGTAG
1 TAATAAAAATAAAAATAATAG
*
5952952 TAATAAAAATAAAAATAAAATAA
1 TAATAAAAATAAAAAT--AATAG
*
5952975 AAATAAAAATAAAAATAATAG
1 TAATAAAAATAAAAATAATAG
** **
5952996 TAATAATGATATTAATAATAG
1 TAATAAAAATAAAAATAATAG
5953017 TAATAAAA
1 TAATAAAA
5953025 CAGAGAAAAG
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
21 40 0.69
23 18 0.31
ACGTcount: A:0.67, C:0.01, G:0.06, T:0.26
Consensus pattern (21 bp):
TAATAAAAATAAAAATAATAG
Found at i:5953166 original size:3 final size:3
Alignment explanation
Indices: 5953160--5953284 Score: 55
Period size: 3 Copynumber: 42.7 Consensus size: 3
5953150 ATAGTTGTAG
* * * * * * *
5953160 TAA TAA TAA TAG TAA GAA AAA TAG TGA TAA T-A TAA CAA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
5953207 T-A TAA CAA -AA TAA T-A TAA CAA TAA TAG TAA T-A TAA CAA -AA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
5953250 TAA TAA TAG TAA CGGAGA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA --TA-A TAA TAA TAA TAA TAA TA
5953285 TAAATAAAAA
Statistics
Matches: 89, Mismatches: 24, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
2 12 0.13
3 74 0.83
4 1 0.01
5 1 0.01
6 1 0.01
ACGTcount: A:0.62, C:0.04, G:0.08, T:0.26
Consensus pattern (3 bp):
TAA
Found at i:5953204 original size:20 final size:21
Alignment explanation
Indices: 5953165--5953204 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
5953155 TGTAGTAATA
*
5953165 ATAATAGTAAGAAAAATAGTG
1 ATAATAGTAACAAAAATAGTG
*
5953186 ATAATA-TAACAATAATAGT
1 ATAATAGTAACAAAAATAGT
5953205 AATATAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.57, C:0.03, G:0.12, T:0.28
Consensus pattern (21 bp):
ATAATAGTAACAAAAATAGTG
Found at i:5953220 original size:19 final size:17
Alignment explanation
Indices: 5953187--5953244 Score: 88
Period size: 17 Copynumber: 3.6 Consensus size: 17
5953177 AAAATAGTGA
5953187 TAATATAACAATAATAG
1 TAATATAACAATAATAG
5953204 TAATATAAC-A-AA-A-
1 TAATATAACAATAATAG
5953217 TAATATAACAATAATAG
1 TAATATAACAATAATAG
5953234 TAATATAACAA
1 TAATATAACAA
5953245 AAAAATAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
13 9 0.24
14 2 0.05
15 4 0.11
16 2 0.05
17 20 0.54
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (17 bp):
TAATATAACAATAATAG
Found at i:5953222 original size:30 final size:30
Alignment explanation
Indices: 5953186--5953251 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
5953176 AAAAATAGTG
5953186 ATAATATAACAATAATAGTAATATAACAAA
1 ATAATATAACAATAATAGTAATATAACAAA
5953216 ATAATATAACAATAATAGTAATATAACAAA
1 ATAATATAACAATAATAGTAATATAACAAA
*
5953246 AAAATA
1 ATAATA
5953252 ATAATAGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (30 bp):
ATAATATAACAATAATAGTAATATAACAAA
Found at i:5954084 original size:14 final size:13
Alignment explanation
Indices: 5954062--5954092 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
5954052 CAAAGAAGAA
5954062 AAAAAAAAGAAAT
1 AAAAAAAAGAAAT
5954075 GAAAAAAAAGAAAT
1 -AAAAAAAAGAAAT
5954089 AAAA
1 AAAA
5954093 CTCAACCTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.84, C:0.00, G:0.10, T:0.06
Consensus pattern (13 bp):
AAAAAAAAGAAAT
Found at i:5954223 original size:10 final size:10
Alignment explanation
Indices: 5954203--5954250 Score: 53
Period size: 10 Copynumber: 4.6 Consensus size: 10
5954193 AAGCAAAATC
5954203 AAAAAAG-AA
1 AAAAAAGAAA
5954212 AAAAAAGAAA
1 AAAAAAGAAA
5954222 AAAAAAGAAA
1 AAAAAAGAAA
*
5954232 TCAAAAATTGAAA
1 --AAAAA-AGAAA
5954245 AAAAAA
1 AAAAAA
5954251 ACGTAACCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
9 7 0.21
10 12 0.36
11 5 0.15
12 5 0.15
13 4 0.12
ACGTcount: A:0.83, C:0.02, G:0.08, T:0.06
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:5955019 original size:88 final size:86
Alignment explanation
Indices: 5954870--5955077 Score: 319
Period size: 88 Copynumber: 2.4 Consensus size: 86
5954860 ATCTATAATT
* *
5954870 TTCAGCCTGTTACCCTATTGCTTTGGGGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTGC
5954935 TTAGGGGGTTAAGATCTTGTAAA
66 TTA-GGGGTTAAGATC-TGTAAA
* * *
5954958 TTCAGCCTGTTACCCTACTGCTCAGGGGTTTAAGGTCCATCGCCTTCGATCTATTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTGC
5955023 TTAGGGGTTAAGATCTGTAAA
66 TTAGGGGTTAAGATCTGTAAA
* *
5955044 TTCCA-CCTGCTACCCTAGTGCTTAGGGGTTTAAG
1 TT-CAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
5955078 ATCTGTAAAT
Statistics
Matches: 111, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
86 34 0.31
87 14 0.13
88 63 0.57
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (86 bp):
TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTGC
TTAGGGGTTAAGATCTGTAAA
Found at i:5955089 original size:43 final size:43
Alignment explanation
Indices: 5954926--5955550 Score: 401
Period size: 43 Copynumber: 14.4 Consensus size: 43
5954916 CGATCTATTT
*
5954926 CCCTACTGCTTAGGGGGTTAAGATCTTGTAAATT-CAGCCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGATC-TGTAAATTCCA-CCTGTTA
* * ** *** * * * *
5954970 CCCTACTGCTCAGGGGTTTAAGGTCCATCGCCTTCGATCTATTT
1 CCCTACTGCTTAGGGGTTTAAGATCTGT-AAATTCCACCTGTTA
*
5955014 CCCTACTGCTTAGGGG-TTAAGATCTGTAAATTCCACCTGCTA
1 CCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCCACCTGTTA
*
5955056 CCCTAGTGCTTAGGGGTTTAAGATCTGTAAATTCCACCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCCACCTGTTA
* * ** *** ** * *
5955099 CCCTACTGCTTAGGAGTTTAAGGTCCATCGCCTTTGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGATCTGT-AAATTCCACCTGTTA
*
5955143 CCCTACTGCTTAGGGGGTTAAGATCTGTAAA-TCCAACCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCC-ACCTGTTA
* * ** * * *
5955186 CCCTACTACTTAGGGGTTTAAGGTTCATCG--CCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAA-GATC-T-GTAAATTCCACCTGTTA
* * *
5955230 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTATTA
1 CCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCCACCTGTTA
* * ** * * *
5955273 CCCTACTGCTTAGGGGTTTAAGGTTCAT-CACCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAA-GATC-TGTAAATTCCACCTGTTA
* * * *
5955317 CCCTACTGTTTTGGGGGTTAAGATCTGTAAATT-TAGCCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCCA-CCTGTTA
* * *** * * * *
5955360 CCCTACTACTTAGGGAG-TTAAG-GCTCGTCGTTTCGATCTATTT
1 CCCTACTGCTTAGGG-GTTTAAGATCT-GTAAATTCCACCTGTTA
* * * *
5955403 CCCTACTGTTTAGGGGGTTAAGATCTGTAAATTCAACCTATTA
1 CCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCCACCTGTTA
* ** * * *
5955446 CCCTACTGCTTAGGGGTTTAAGGTTCATCG--CCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAA-GATC-T-GTAAATTCCACCTGTTA
* *
5955490 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATT-TAGCCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCCA-CCTGTTA
5955533 CCCTACTGCTTAGGGGTT
1 CCCTACTGCTTAGGGGTT
5955551 GAGGCCCATC
Statistics
Matches: 432, Mismatches: 123, Indels: 53
0.71 0.20 0.09
Matches are distributed among these distances:
41 2 0.00
42 31 0.07
43 224 0.52
44 167 0.39
45 6 0.01
46 2 0.00
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCCACCTGTTA
Found at i:5955164 original size:87 final size:87
Alignment explanation
Indices: 5955056--5955593 Score: 803
Period size: 87 Copynumber: 6.2 Consensus size: 87
5955046 CCACCTGCTA
* * * *
5955056 CCCTAGTGCTTAGGGGTTTAAGATCTGTAAATTCCACCTGTTACCCTACTGCTTAGGAGTTTAAG
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG
* *
5955121 GTCCATCGCCTTTGATCTGTTT
66 GTTCATCGCCTTCGATCTGTTT
* *
5955143 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCCAACCTGTTACCCTACTACTTAGGGGTTTAAG
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG
5955208 GTTCATCGCCTTCGATCTGTTT
66 GTTCATCGCCTTCGATCTGTTT
*
5955230 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTATTACCCTACTGCTTAGGGGTTTAAG
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG
*
5955295 GTTCATCACCTTCGATCTGTTT
66 GTTCATCGCCTTCGATCTGTTT
* * * * *
5955317 CCCTACTGTTTTGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTACTTAGGGAG-TTAA
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGG-GTTTAA
* * * *
5955381 GGCTCGTCG-TTTCGATCTATTT
65 GGTTCATCGCCTTCGATCTGTTT
* *
5955403 CCCTACTGTTTAGGGGGTTAAGATCTGTAAATTCAACCTATTACCCTACTGCTTAGGGGTTTAAG
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG
5955468 GTTCATCGCCTTCGATCTGTTT
66 GTTCATCGCCTTCGATCTGTTT
* * *
5955490 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGG-TTGAG
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG
** *
5955554 GCCCATCGCTTTCGATCTGTTT
66 GTTCATCGCCTTCGATCTGTTT
5955576 CCCTACTGCTTAGGGGGT
1 CCCTACTGCTTAGGGGGT
5955594 CAAATCTACT
Statistics
Matches: 408, Mismatches: 40, Indels: 7
0.90 0.09 0.02
Matches are distributed among these distances:
85 1 0.00
86 116 0.28
87 290 0.71
88 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (87 bp):
CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG
GTTCATCGCCTTCGATCTGTTT
Found at i:5955257 original size:217 final size:217
Alignment explanation
Indices: 5954875--5955294 Score: 671
Period size: 217 Copynumber: 1.9 Consensus size: 217
5954865 TAATTTTCAG
* * *
5954875 CCTGTTACCCTATTGCTTTGGGGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTGCTTAGG
* * *
5954940 GGGTTAAGATCTTGTAAATTCAGCCTGTTACCCTACTGCTCAGGGGTTTAAGGTCCATCGCCTTC
66 GGGTTAAGATCTTGTAAATCCAACCTGTTACCCTACTACTCAGGGGTTTAAGGTCCATCGCCTTC
* * *
5955005 GATCTATTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATTCCACCTGCTACCCTAGTGCTTAGG
131 GATCTATTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATTCAACCTACTACCCTACTGCTTAGG
5955070 GGTTTAAGATCTGTAAATTCCA
196 GGTTTAAGATCTGTAAATTCCA
* * * *
5955092 CCTGTTACCCTACTGCTTAGGAGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTGCTTAGG
* *
5955157 GGGTTAAGATC-TGTAAATCCAACCTGTTACCCTACTACTTAGGGGTTTAAGGTTCATCGCCTTC
66 GGGTTAAGATCTTGTAAATCCAACCTGTTACCCTACTACTCAGGGGTTTAAGGTCCATCGCCTTC
* *
5955221 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTATTACCCTACTGCTTAG
131 GATCTATTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATTCAACCTACTACCCTACTGCTTAG
5955286 GGGTTTAAG
195 GGGTTTAAG
5955295 GTTCATCACC
Statistics
Matches: 185, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
216 68 0.37
217 117 0.63
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (217 bp):
CCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTGCTTAGG
GGGTTAAGATCTTGTAAATCCAACCTGTTACCCTACTACTCAGGGGTTTAAGGTCCATCGCCTTC
GATCTATTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATTCAACCTACTACCCTACTGCTTAGG
GGTTTAAGATCTGTAAATTCCA
Done.