Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 221 of 378
Found at i:65421287 original size:14 final size:15
Alignment explanation
Indices: 65421268--65421297 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
65421258 GTTTATTATA
65421268 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
65421282 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
65421297 T
1 T
65421298 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:65423256 original size:46 final size:46
Alignment explanation
Indices: 65423203--65423378 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
65423193 TATTTGGGCA
65423203 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
65423249 TCCGAACTCGTTGAGTTGAGTCTGAGTTCA---A-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* *
65423294 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
65423342 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65423379 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.05
45 1 0.01
46 64 0.58
47 28 0.25
48 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:65423358 original size:93 final size:93
Alignment explanation
Indices: 65423199--65423371 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
65423189 AGGATATTTG
* *
65423199 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
65423264 TTGAGTCTGAGTTCAAGAGATGTAACTA
66 TTGAGTCTGAGTTCAAGAGATGTAACTA
* *
65423292 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
65423357 TTGAGTCTGAGTTCA
66 TTGAGTCTGAGTTCA
65423372 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCTGAGTTCAAGAGATGTAACTA
Found at i:65426032 original size:43 final size:43
Alignment explanation
Indices: 65425978--65426092 Score: 158
Period size: 43 Copynumber: 2.7 Consensus size: 43
65425968 GCTGGTGAAT
* *
65425978 AATATTATCGGGCTTCGATCCTAGCAGGCTATAATACCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGA
* * *
65426021 GATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGA
* * *
65426064 AATGATATCGGGCTTCAAGCCTAGTAGGC
1 AATAATATCGGGCTTCGAGCCTAGCAGGC
65426093 GAAATGCCAG
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (43 bp):
AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGA
Found at i:65427960 original size:18 final size:18
Alignment explanation
Indices: 65427937--65427975 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
65427927 TAGGCTGAGG
65427937 ACACGGGCGTGTGACACC
1 ACACGGGCGTGTGACACC
*
65427955 ACACGGGCGTGTGGCACC
1 ACACGGGCGTGTGACACC
65427973 ACA
1 ACA
65427976 TGGCTTACCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.33, G:0.33, T:0.10
Consensus pattern (18 bp):
ACACGGGCGTGTGACACC
Found at i:65434836 original size:55 final size:56
Alignment explanation
Indices: 65434769--65434982 Score: 297
Period size: 56 Copynumber: 3.8 Consensus size: 56
65434759 TGTATATGCG
* * * * *
65434769 GCATCGACATGTGATTCTGATATATGTGTGCAAGAAAGACCA-CTTTTATACGTCA
1 GCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATACGTTA
* *
65434824 GCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATGCGTTG
1 GCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATACGTTA
*
65434880 GCATCGATATGTGATTAC-GATATATGTTTGCGAGTAAGACCATGTTTTATACGTTA
1 GCATCGATATGTGATT-CTGATATATGTGTGCGAGTAAGACCATGTTTTATACGTTA
* * * *
65434936 GCATCGATATGTGACTCGGATATATGTGTGTGAGTAAGACCCTGTTT
1 GCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTT
65434983 GGGACAATGG
Statistics
Matches: 142, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
55 40 0.28
56 101 0.71
57 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (56 bp):
GCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATACGTTA
Found at i:65434902 original size:56 final size:56
Alignment explanation
Indices: 65434768--65435007 Score: 295
Period size: 56 Copynumber: 4.3 Consensus size: 56
65434758 ATGTATATGC
* * * * *
65434768 GGCATCGACATGTGATTCTGATATATGTGTGCAAGAAAGACCA-CTTTTATACGTC
1 GGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATACGTT
* *
65434823 AGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATGCGTT
1 GGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATACGTT
*
65434879 GGCATCGATATGTGATTAC-GATATATGTTTGCGAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGATT-CTGATATATGTGTGCGAGTAAGACCATGTTTTATACGTT
* * * * * *** **
65434935 AGCATCGATATGTGACTCGGATATATGTGTGTGAGTAAGACCCTGTTTGGGACAAT
1 GGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATACGTT
65434991 GGCATCGATATGTGATT
1 GGCATCGATATGTGATT
65435008 ACATGTAAGA
Statistics
Matches: 160, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
55 40 0.25
56 119 0.74
57 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (56 bp):
GGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATACGTT
Found at i:65441432 original size:56 final size:56
Alignment explanation
Indices: 65441372--65441579 Score: 310
Period size: 56 Copynumber: 3.7 Consensus size: 56
65441362 GAGATAGGAT
* * * *
65441372 CTTACTCGTAAACACATATCAGAATCACATATCGATGCCAACGTATGAAACGTGGA
1 CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGA
* * *
65441428 CTTACTCGTACACATATATCGGAATCACATATCGATGCCAATGTATTAAACGTGGA
1 CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGA
* * *
65441484 CTTACTCGCACACATATATTAGAATCACATATCGATGTCAACGTATTAAACGTGGT
1 CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGA
65441540 CTTACTCGCACACATATATCA-AAGTCACATATCGATGCCA
1 CTTACTCGCACACATATATCAGAA-TCACATATCGATGCCA
65441580 CATATTCTTC
Statistics
Matches: 138, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
55 2 0.01
56 136 0.99
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (56 bp):
CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGA
Found at i:65442641 original size:19 final size:19
Alignment explanation
Indices: 65442605--65442643 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
65442595 CATGGCTTAT
* * *
65442605 TATTATTTTATGATATATA
1 TATTATATTATAACATATA
65442624 TATTATATTATAACATATA
1 TATTATATTATAACATATA
65442643 T
1 T
65442644 TAATTTAATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (19 bp):
TATTATATTATAACATATA
Found at i:65445265 original size:101 final size:99
Alignment explanation
Indices: 65445087--65445274 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
65445077 AGCCAAAGCT
* * * *
65445087 ATCTGGTACGCATAGTAGCCTACAATTAGTACTACACATGCGACCAATTATCCAGTACACGTAGT
1 ATCTGATACACATAGTAGCCTACAATTAGTACTACACACGCGACCAATTATCCAGTACACATAGT
65445152 AGCCTGCACTTAGTACTACACACATGACCTAACC
66 AGCCTGCACTTAGTACTACACACATGACCTAACC
* * * * * * *
65445186 ATCTGATACACATAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGTTATCGAGTACGCATA
1 ATCTGATACACATAGTAGCCTACAATTAGTACTACACACGCGA-CCAA-TTATCCAGTACACATA
65445251 GTAGCCTGCACTTAGTACTACACA
64 GTAGCCTGCACTTAGTACTACACA
65445275 TGCGACCTCA
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
99 36 0.47
100 3 0.04
101 37 0.49
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (99 bp):
ATCTGATACACATAGTAGCCTACAATTAGTACTACACACGCGACCAATTATCCAGTACACATAGT
AGCCTGCACTTAGTACTACACACATGACCTAACC
Found at i:65445270 original size:51 final size:49
Alignment explanation
Indices: 65445092--65445274 Score: 206
Period size: 50 Copynumber: 3.7 Consensus size: 49
65445082 AAGCTATCTG
* * * * * *
65445092 GTACGCATAGTAGCCTACAATTAGTACTACACATGCGACCAATTATCCA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGA
* * **
65445141 GTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATC-GA
* *
65445192 -TACACATAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGTTATCGA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGA
*
65445242 GTACGCATAGTAGCCTGCACTTAGTACTACACA
1 GTACACATAGTAGCCTGCACTTAGTACTACACA
65445275 TGCGACCTCA
Statistics
Matches: 111, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 33 0.30
50 43 0.39
51 35 0.32
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGA
Found at i:65449594 original size:80 final size:80
Alignment explanation
Indices: 65449510--65449658 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
65449500 TATGGTAACC
* * * *
65449510 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
65449574 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
65449590 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
65449655 CCGG
66 CCGG
65449659 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:65449600 original size:40 final size:38
Alignment explanation
Indices: 65449551--65449658 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
65449541 ATCACGATTT
*
65449551 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
65449591 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
65449631 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
65449659 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:65457710 original size:80 final size:80
Alignment explanation
Indices: 65457626--65457774 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
65457616 TATGGTAACC
* * * *
65457626 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
65457690 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
65457706 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
65457771 CCGG
66 CCGG
65457775 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:65457716 original size:40 final size:38
Alignment explanation
Indices: 65457667--65457774 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
65457657 ATCACGATTT
*
65457667 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
65457707 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
65457747 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
65457775 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:65466838 original size:80 final size:80
Alignment explanation
Indices: 65466754--65466902 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
65466744 TATGGTAACC
* * * *
65466754 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
65466818 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
65466834 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
65466899 CCGG
66 CCGG
65466903 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:65466844 original size:40 final size:38
Alignment explanation
Indices: 65466795--65466902 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
65466785 ATCACGATTT
*
65466795 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
65466835 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
65466875 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
65466903 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:65471482 original size:50 final size:50
Alignment explanation
Indices: 65471372--65471555 Score: 228
Period size: 50 Copynumber: 3.7 Consensus size: 50
65471362 CTGGTACGCA
* * * *
65471372 TAGTAGCTTGCACTTAGTACTACACATGCGACC-AATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCGAGTACACG
**
65471421 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGA-TACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATC-GAGTACACG
* * * *
65471471 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TTATCGAGTACACG
* *
65471522 TAGTAGCTTGCACTTAGTACTACACATGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
65471556 CACAATAGAT
Statistics
Matches: 115, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
49 30 0.26
50 47 0.41
51 38 0.33
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCGAGTACACG
Found at i:65471542 original size:101 final size:99
Alignment explanation
Indices: 65471372--65471555 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
65471362 CTGGTACGCA
* * *
65471372 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTGCACTTA
65471437 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* * * * *
65471471 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGAGTACGCATAGTAGCTTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCAGTACACATAGTAGCCTGCACT
*
65471536 TAGTACTACACATGTGACCT
64 TAGTACTACACACGTGACCT
65471556 CACAATAGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 28 0.38
100 3 0.04
101 43 0.58
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:65473676 original size:49 final size:49
Alignment explanation
Indices: 65473599--65473843 Score: 319
Period size: 49 Copynumber: 4.9 Consensus size: 49
65473589 TAGCCGAAGC
* * *
65473599 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
65473648 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
65473698 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * *
65473749 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
65473798 TATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
65473844 TCACAATAGC
Statistics
Matches: 168, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 82 0.49
50 48 0.29
51 38 0.23
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:65473782 original size:101 final size:98
Alignment explanation
Indices: 65473612--65473843 Score: 329
Period size: 100 Copynumber: 2.3 Consensus size: 98
65473602 CTGGTACGCA
* * * *
65473612 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
*
65473677 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCTGATACACG
* *
65473711 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** *
65473776 TAGTACTACACATGCGACCAATTATCTGGTACACG
64 TAGTACTACACACGCGACCAACCATCTGATACACG
*
65473811 TAGTAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
65473844 TCACAATAGC
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 30 0.25
100 46 0.39
101 42 0.36
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCTGATACACG
Found at i:65476619 original size:15 final size:15
Alignment explanation
Indices: 65476590--65476628 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
65476580 AACAGAGAAG
65476590 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
65476606 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
65476621 CCATGATA
1 CCAAGATA
65476629 CGAGAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:65479472 original size:49 final size:49
Alignment explanation
Indices: 65479353--65479582 Score: 277
Period size: 49 Copynumber: 4.7 Consensus size: 49
65479343 CTGGTACGCA
* * *
65479353 TAGTAGCCTGCACTTAGTACTACACATGCGGCCAATTAT-TCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCT-GATACACG
**
65479402 TAGTA-CCTGCACTTAGTACTACA-ACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGATACACG
* * * *
65479450 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGATACACG
* * *
65479501 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
* *
65479550 TAGTAGCCTACACTTAGTACTACACACCTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
65479583 TCACAATAGC
Statistics
Matches: 155, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
47 5 0.03
48 35 0.23
49 65 0.42
50 11 0.07
51 39 0.25
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
Found at i:65479548 original size:100 final size:97
Alignment explanation
Indices: 65479339--65479576 Score: 291
Period size: 100 Copynumber: 2.4 Consensus size: 97
65479329 TGTAGCCAAG
* * * * *
65479339 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGGCCAATTATTCGATACACGTA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGGCAAATTATTCGATACACATA
*
65479404 GTACCTGCACTTAGTACTACAACGTGACCTAA
66 GTACCTGCACTTAGTACTACAACGCGACCTAA
* * * * *
65479436 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTA-TCAGGTACAC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCG-GCAAA-TTATTC-GATACAC
*
65479500 ATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
63 ATAGTA-CCTGCACTTAGTACTACA-ACGCGACCTAA
* *
65479536 TTATCTGGTACACGTAGTAGCCTACACTTAGTACTACACAC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
65479577 CTGACCTCAC
Statistics
Matches: 120, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
97 38 0.32
98 5 0.04
99 14 0.12
100 57 0.47
101 6 0.05
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (97 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGGCAAATTATTCGATACACATA
GTACCTGCACTTAGTACTACAACGCGACCTAA
Found at i:65480260 original size:30 final size:30
Alignment explanation
Indices: 65480226--65480285 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
65480216 CTTTAATACG
65480226 AACTTTGGAAAAATTATCA-TTTTGCCCCTA
1 AACTTTGGAAAAATTA-CACTTTTGCCCCTA
* * *
65480256 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
65480286 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:65483101 original size:18 final size:16
Alignment explanation
Indices: 65483069--65483103 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
65483059 TTTAAAAACT
65483069 TTTATTTTTTATTTTA
1 TTTATTTTTTATTTTA
65483085 TTTATGTTTTTACTTTTA
1 TTTAT-TTTTTA-TTTTA
65483103 T
1 T
65483104 CTTTTTAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 6 0.35
18 6 0.35
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTATTTTTTATTTTA
Found at i:65487955 original size:15 final size:15
Alignment explanation
Indices: 65487923--65487951 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
65487913 ATATTATGTG
65487923 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
65487938 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
65487952 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:65488484 original size:15 final size:15
Alignment explanation
Indices: 65488464--65488494 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
65488454 AAATATGAAA
65488464 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
65488479 GATATGTTTTGTATT
1 GATATGTTTTGGATT
65488494 G
1 G
65488495 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:65489150 original size:45 final size:45
Alignment explanation
Indices: 65489045--65489248 Score: 217
Period size: 45 Copynumber: 4.7 Consensus size: 45
65489035 AGATTTCAAA
* * * *
65489045 ATGTGTTTTCGTGTAAGACCACATTTGGGTCATTGGCATCG--AT
1 ATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATAT
* *
65489088 ATGTGTTCTCGTGTAAGACCACGTCTAGGACGTTGGCATCGATAT
1 ATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATAT
*
65489133 ATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCGATAT
1 ATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATAT
* * * * *
65489178 ATGTGGTTAT-GTGTAAGACCATGTCTGGGACATCGACATCG-TAT
1 ATGT-GTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATAT
*
65489222 -T-TG-ATTCGTGTAAGACC-CTGTCTGGGA
1 ATGTGTTTTCGTGTAAGACCAC-GTCTGGGA
65489249 TAGTGGCATT
Statistics
Matches: 138, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
40 1 0.01
41 19 0.14
42 1 0.01
43 36 0.26
44 3 0.02
45 74 0.54
46 4 0.03
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (45 bp):
ATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATAT
Found at i:65492340 original size:27 final size:27
Alignment explanation
Indices: 65492272--65492342 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
65492262 CGACTTGTAA
* *
65492272 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
65492299 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
65492326 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
65492343 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:65492349 original size:27 final size:27
Alignment explanation
Indices: 65492326--65492449 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
65492316 CAATTTACAG
65492326 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
65492353 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
65492380 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
65492407 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
65492434 AATTACTAAAATACCC
1 AATTACCAAAATACCC
65492450 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:65492368 original size:54 final size:53
Alignment explanation
Indices: 65492310--65492449 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
65492300 ATTACCGTTT
65492310 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
65492364 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
65492418 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
65492450 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:65492461 original size:81 final size:81
Alignment explanation
Indices: 65492326--65492478 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
65492316 CAATTTACAG
* **
65492326 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
65492391 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
65492407 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
65492470 AATACCCTT
64 AATACCCTT
65492479 GTAGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:65492462 original size:27 final size:27
Alignment explanation
Indices: 65492432--65492493 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
65492422 CATGGTTTGA
65492432 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* *
65492459 AAAATTACTGAAATACCCTTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
65492486 AAAATTAC
1 AAAATTAC
65492494 CATTTTGCCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:65492462 original size:54 final size:54
Alignment explanation
Indices: 65492326--65492476 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
65492316 CAATTTACAG
* ** * * *
65492326 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
65492380 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
65492434 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
65492477 TTGTAGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:65493147 original size:28 final size:28
Alignment explanation
Indices: 65493114--65493210 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
65493104 GCGTAGATCA
65493114 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
65493142 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
65493170 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
65493198 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
65493211 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:65502028 original size:40 final size:40
Alignment explanation
Indices: 65501900--65502030 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
65501890 TATGCTGGAA
* * * *
65501900 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
65501940 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
65501980 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
65502020 ATTATATCCGG
1 ATTATATCCGG
65502031 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:65510700 original size:27 final size:28
Alignment explanation
Indices: 65510643--65510707 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 28
65510633 TTAGATGTGC
*
65510643 TATACCCCTATGTATGCAAAATTACCAT
1 TATACCCCTATGTATGCAAAATGACCAT
*
65510671 TATACCCCTATGTATGC-AAATGACCTT
1 TATACCCCTATGTATGCAAAATGACCAT
65510698 TATACCCCTA
1 TATACCCCTA
65510708 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 18 0.51
28 17 0.49
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
TATACCCCTATGTATGCAAAATGACCAT
Found at i:65510846 original size:27 final size:26
Alignment explanation
Indices: 65510813--65510901 Score: 81
Period size: 27 Copynumber: 3.2 Consensus size: 26
65510803 AGGAAGCGTC
65510813 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGC-ATGCCACAAA-TATCTGTT
* *
65510841 -TGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGG-CATGCCACAAATATCTGTT
* *
65510867 CTGGTGGCACTGCTACAAAATATCTATAT
1 CTGGTGGCA-TGCCAC-AAATATCTGT-T
65510896 CTGGTG
1 CTGGTG
65510902 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
26 9 0.18
27 25 0.50
28 9 0.18
29 7 0.14
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (26 bp):
CTGGTGGCATGCCACAAATATCTGTT
Found at i:65512588 original size:45 final size:45
Alignment explanation
Indices: 65512537--65512622 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
65512527 ATGTGATCTG
65512537 AACTCATTGAGTCGTGGTCTGAGTTCATGATATATGTGACATCCA
1 AACTCATTGAGTCGTGGTCTGAGTTCATGATATATGTGACATCCA
* *
65512582 AACTCATTGAGTTGTGGTCTGAGTTCGTGATATATGTGACA
1 AACTCATTGAGTCGTGGTCTGAGTTCATGATATATGTGACA
65512623 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (45 bp):
AACTCATTGAGTCGTGGTCTGAGTTCATGATATATGTGACATCCA
Found at i:65518661 original size:16 final size:16
Alignment explanation
Indices: 65518640--65518673 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
65518630 TAATTTTTGA
65518640 GTTTGTTGGTGATTTT
1 GTTTGTTGGTGATTTT
65518656 GTTTGTTGGTGATTTT
1 GTTTGTTGGTGATTTT
65518672 GT
1 GT
65518674 AAAATGCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.06, C:0.00, G:0.32, T:0.62
Consensus pattern (16 bp):
GTTTGTTGGTGATTTT
Found at i:65519358 original size:43 final size:43
Alignment explanation
Indices: 65519310--65519427 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
65519300 GTTATCTAGA
*
65519310 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
** * *
65519353 TGTGATTATGTATAAGACCATGTCTAGGACATTGGCATCGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * *
65519396 TATGATTTCAGGTAAGACCCTATCTGGGACAT
1 TGTGATTACATGTAAGACCATGTCTGGGACAT
65519428 CGATATATGA
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:65522908 original size:27 final size:26
Alignment explanation
Indices: 65522860--65522919 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
65522850 GCGAGGCTGC
*
65522860 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
65522887 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
65522913 CAGATAT
1 CAGATAT
65522920 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:65525398 original size:37 final size:37
Alignment explanation
Indices: 65525338--65525429 Score: 148
Period size: 37 Copynumber: 2.5 Consensus size: 37
65525328 CTTATTACGA
* *
65525338 AGTCTTACCCGGACATAATCTCCACACGTAGTCATCG
1 AGTCGTACCTGGACATAATCTCCACACGTAGTCATCG
65525375 AGTCGTACCTGGACATAATCTCCACACGTAGTCATCG
1 AGTCGTACCTGGACATAATCTCCACACGTAGTCATCG
*
65525412 GGTCGTACCTGGAACATA
1 AGTCGTACCTGG-ACATA
65525430 TTTCCAAGTT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 46 0.90
38 5 0.10
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (37 bp):
AGTCGTACCTGGACATAATCTCCACACGTAGTCATCG
Found at i:65525570 original size:49 final size:49
Alignment explanation
Indices: 65525508--65525792 Score: 482
Period size: 49 Copynumber: 5.8 Consensus size: 49
65525498 ATACATATCG
* *
65525508 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTCCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
* *
65525557 CATTCATCACATCGGCCCTTAGGCCTTATCACATACATATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
65525606 CATTCATCACATCGGCCATTAGGCCTTATCACA-ATAATATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATAT-ATATACATTTTCA
65525655 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
*
65525704 CATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
* * *
65525753 CATTCATCACATTGGCCATTCGGCCTTATCACACATATAT
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
65525793 GTATATCATA
Statistics
Matches: 223, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
48 1 0.00
49 220 0.99
50 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
Found at i:65528708 original size:41 final size:40
Alignment explanation
Indices: 65528609--65528710 Score: 125
Period size: 41 Copynumber: 2.5 Consensus size: 40
65528599 GAATCACGTA
* * * *
65528609 CCTTCGGGATTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CCTTCGGGAATTAGCCCGGATTTAGTAACTAGCACAAAAG
*
65528649 CCTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAG
1 CCTTCGGGAATTAG-CCCGGATTTAGTAAC-TAGCACAAAAG
*
65528690 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGAATTAGCCCGGAT
65528711 ACCATTCGAA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
39 1 0.02
40 25 0.47
41 26 0.49
42 1 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGAATTAGCCCGGATTTAGTAACTAGCACAAAAG
Found at i:65529503 original size:40 final size:40
Alignment explanation
Indices: 65529454--65529645 Score: 348
Period size: 40 Copynumber: 4.8 Consensus size: 40
65529444 CCAGTATGAT
* * *
65529454 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
65529494 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
65529534 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
65529574 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
65529614 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
65529646 CTCAATTCTC
Statistics
Matches: 148, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 148 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:65531586 original size:37 final size:37
Alignment explanation
Indices: 65531536--65531622 Score: 156
Period size: 37 Copynumber: 2.3 Consensus size: 37
65531526 TACGAAGTCT
*
65531536 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCA
65531573 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCA
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCA
65531610 TACCCGGAACATA
1 TACCCGG-ACATA
65531623 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 43 0.90
38 5 0.10
ACGTcount: A:0.28, C:0.32, G:0.20, T:0.21
Consensus pattern (37 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTCA
Found at i:65531763 original size:49 final size:49
Alignment explanation
Indices: 65531701--65532082 Score: 694
Period size: 49 Copynumber: 7.8 Consensus size: 49
65531691 ATACATATCG
* *
65531701 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTCCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
*
65531750 CATTCATCACATCGGCCATTAGGCCTTATCACATACATATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
65531799 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
65531848 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
65531897 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
*
65531946 CATTCATCACATCGGCCATTAGGCCTTATCA-ATATATATACATTATCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
*
65531994 CATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
* *
65532043 CATTCATCACATCGGCCATTCGGCCTTATCACACATATAT
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
65532083 GTATATTATA
Statistics
Matches: 322, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
48 47 0.15
49 275 0.85
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
Found at i:65532658 original size:44 final size:44
Alignment explanation
Indices: 65532595--65532683 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
65532585 AAATATCTCT
65532595 TTATAGGAAATTTATTTGCTTCCACGGTCTCTTTTATAAGAAAC
1 TTATAGGAAATTTATTTGCTTCCACGGTCTCTTTTATAAGAAAC
65532639 TTATAGGAAATTTATTTGCTTCCACGGTCTCTTTTATAAGAAAC
1 TTATAGGAAATTTATTTGCTTCCACGGTCTCTTTTATAAGAAAC
65532683 T
1 T
65532684 AGACCAACTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (44 bp):
TTATAGGAAATTTATTTGCTTCCACGGTCTCTTTTATAAGAAAC
Found at i:65537121 original size:16 final size:17
Alignment explanation
Indices: 65537100--65537132 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
65537090 CACATTGAAG
65537100 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
65537116 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
65537133 CTTCTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:65538008 original size:59 final size:60
Alignment explanation
Indices: 65537931--65538069 Score: 169
Period size: 59 Copynumber: 2.3 Consensus size: 60
65537921 TAGTGTTAAC
* *
65537931 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
65537992 TGGG-CTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
65538051 TGGGCCTTGCCCATATCAA
1 TGGGCCTAGCCCATATCAA
65538070 CACAGTTAGG
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
59 42 0.62
60 20 0.29
61 6 0.09
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:65541871 original size:29 final size:29
Alignment explanation
Indices: 65541838--65541897 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
65541828 TTCTCGGCTC
65541838 TCAATGCTGACACCACATTAAACAGATAA
1 TCAATGCTGACACCACATTAAACAGATAA
*
65541867 TCAATGTTGACACCACATTAAACAGATAA
1 TCAATGCTGACACCACATTAAACAGATAA
65541896 TC
1 TC
65541898 CCTACGCTCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.43, C:0.23, G:0.10, T:0.23
Consensus pattern (29 bp):
TCAATGCTGACACCACATTAAACAGATAA
Found at i:65542094 original size:33 final size:33
Alignment explanation
Indices: 65542057--65542123 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
65542047 ATCCAGAGAA
*
65542057 AACTTTTCCTTGAGTTTCTATAGGAATATCTCT
1 AACTTTTCCTTGAGTTTCTATAGGAACATCTCT
*
65542090 AACTTTTCCTTGAGTTTCTATAGGCACATCTCT
1 AACTTTTCCTTGAGTTTCTATAGGAACATCTCT
65542123 A
1 A
65542124 TACAATTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (33 bp):
AACTTTTCCTTGAGTTTCTATAGGAACATCTCT
Found at i:65545120 original size:19 final size:19
Alignment explanation
Indices: 65545095--65545159 Score: 121
Period size: 19 Copynumber: 3.4 Consensus size: 19
65545085 TCGGCCTGTT
65545095 GGCCCATTGGCCTGTTTTC
1 GGCCCATTGGCCTGTTTTC
*
65545114 AGCCCATTGGCCTGTTTTC
1 GGCCCATTGGCCTGTTTTC
65545133 GGCCCATTGGCCTGTTTTC
1 GGCCCATTGGCCTGTTTTC
65545152 GGCCCATT
1 GGCCCATT
65545160 AAGCCCAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 44 1.00
ACGTcount: A:0.08, C:0.32, G:0.25, T:0.35
Consensus pattern (19 bp):
GGCCCATTGGCCTGTTTTC
Found at i:65549048 original size:42 final size:43
Alignment explanation
Indices: 65548913--65549080 Score: 153
Period size: 43 Copynumber: 4.0 Consensus size: 43
65548903 ATAAGCTCGC
* * * * *
65548913 ACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCA-TAT
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
** * * * *
65548954 ATTGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCATAAT
1 A-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
* *
65548998 ATAATGCCAATGTCCTAGACATGGTCTTAC-CGTAATCACAAT
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
* * * *
65549040 ACAATGCCAATCTCCCAAACATGTTCTTACATGTAATCACA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
65549081 TCTCGATAAC
Statistics
Matches: 101, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.01
42 40 0.40
43 57 0.56
44 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (43 bp):
ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
Found at i:65552872 original size:28 final size:28
Alignment explanation
Indices: 65552841--65552898 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
65552831 ATTCTTATAA
65552841 GTAAGGTTTTTTTTTGTGTAATTGGGTG
1 GTAAGGTTTTTTTTTGTGTAATTGGGTG
65552869 GTAAGGTTTTTTTTTGTGTAATTGGGTG
1 GTAAGGTTTTTTTTTGTGTAATTGGGTG
65552897 GT
1 GT
65552899 TTGAATATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.14, C:0.00, G:0.33, T:0.53
Consensus pattern (28 bp):
GTAAGGTTTTTTTTTGTGTAATTGGGTG
Found at i:65560410 original size:27 final size:27
Alignment explanation
Indices: 65560380--65560494 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 27
65560370 CTTAATCGAC
* * *
65560380 AAAATGTCTATTTTGCGCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATATGGT
*
65560407 AAAATGACTATTTTGCCCTTATATGAT
1 AAAATGACTATTTTGCCCTTATATGGT
* * *
65560434 AAAATGAATGTTTTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATATGGT
* *
65560461 AAAATAACTATTTTTCCCTTATATGGT
1 AAAATGACTATTTTGCCCTTATATGGT
*
65560488 AAGATGA
1 AAAATGA
65560495 TTGTATTGCC
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTATATGGT
Found at i:65560504 original size:54 final size:54
Alignment explanation
Indices: 65560392--65560511 Score: 168
Period size: 54 Copynumber: 2.2 Consensus size: 54
65560382 AATGTCTATT
* * *
65560392 TTGCGCTTATGTGGTAAAATGACTATTTTGCCCTTATATGATAAAATGAATGTT
1 TTGCCCTTATGTGGTAAAATAACTATTTTGCCCTTATATGATAAAATGAATGTA
* * * *
65560446 TTGCCCTTATGTGGTAAAATAACTATTTTTCCCTTATATGGTAAGATGATTGTA
1 TTGCCCTTATGTGGTAAAATAACTATTTTGCCCTTATATGATAAAATGAATGTA
*
65560500 TTGCCCCTATGT
1 TTGCCCTTATGT
65560512 AATGTATGTT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (54 bp):
TTGCCCTTATGTGGTAAAATAACTATTTTGCCCTTATATGATAAAATGAATGTA
Found at i:65568655 original size:22 final size:22
Alignment explanation
Indices: 65568599--65568656 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
65568589 CTTCCATTCG
* *
65568599 TCTCATTAAA-GGCTTTCATACA
1 TCTCA-TAAAGGGCTGTCAAACA
*
65568621 TC-CCTAAAGGGGCTGTCAAACA
1 TCTCATAAA-GGGCTGTCAAACA
65568643 TCTCATAAAGGGCT
1 TCTCATAAAGGGCT
65568657 CTTATACATC
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
20 4 0.14
21 1 0.03
22 19 0.66
23 5 0.17
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (22 bp):
TCTCATAAAGGGCTGTCAAACA
Found at i:65569555 original size:21 final size:21
Alignment explanation
Indices: 65569516--65569555 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
65569506 TTCTAAGGAC
*
65569516 TTTTAATTAAGTTTTATTTCA
1 TTTTAATTAAGTTTCATTTCA
65569537 TTTTAA-TAAGTTTGCATTT
1 TTTTAATTAAGTTT-CATTT
65569556 TAATTTATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTTAATTAAGTTTCATTTCA
Found at i:65571236 original size:34 final size:34
Alignment explanation
Indices: 65571206--65571273 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
65571196 TAAGCCCTTA
* * * *
65571206 ACAGTAGCATTATTAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTATCAGTATGGGCCTTAGCCCAAT
65571240 ACAGTAACAGTATCAGTATGGGCCTTAGCCCAAT
1 ACAGTAACAGTATCAGTATGGGCCTTAGCCCAAT
65571274 TTAGTATAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (34 bp):
ACAGTAACAGTATCAGTATGGGCCTTAGCCCAAT
Found at i:65574074 original size:39 final size:39
Alignment explanation
Indices: 65574031--65574105 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 39
65574021 ATAAAGATTA
* * *
65574031 ATGTGTATGAATGCAGAAGTGGATTGTAAAGTTTGTTAG
1 ATGTGGATGAATGCAGAAGTAGATTATAAAGTTTGTTAG
* *
65574070 ATGTGGATGATTGTAGAAGTAGATTATAAAGTTTGT
1 ATGTGGATGAATGCAGAAGTAGATTATAAAGTTTGT
65574106 CAAAGTCGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.32, C:0.01, G:0.29, T:0.37
Consensus pattern (39 bp):
ATGTGGATGAATGCAGAAGTAGATTATAAAGTTTGTTAG
Found at i:65577016 original size:96 final size:96
Alignment explanation
Indices: 65576839--65577017 Score: 268
Period size: 96 Copynumber: 1.9 Consensus size: 96
65576829 TCTTCTCTTG
* * *
65576839 TTGGATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTACACCAATAACATTGCACA
1 TTGGATATTTAATTCGACATCGGAAACCCTCATGATCTTTTGAACTACACCAATAACATTGCACA
* * *
65576904 AAAGGTGATAGCTCAATCTTATTCTCTCTAT
66 AAAGGTAAGAGATCAATCTTATTCTCTCTAT
* * *
65576935 TTGGATATTTTATTCGACATCGGAAATCCTCATGATCTTTTGAACTACACCAATAACATTTCACA
1 TTGGATATTTAATTCGACATCGGAAACCCTCATGATCTTTTGAACTACACCAATAACATTGCACA
*
65577000 ATAGGTAAGAGATCAATC
66 AAAGGTAAGAGATCAATC
65577018 GTACTCCTCT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (96 bp):
TTGGATATTTAATTCGACATCGGAAACCCTCATGATCTTTTGAACTACACCAATAACATTGCACA
AAAGGTAAGAGATCAATCTTATTCTCTCTAT
Found at i:65577225 original size:18 final size:18
Alignment explanation
Indices: 65577204--65577238 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
65577194 CTCAATAAGG
65577204 TAAGAATTAATCTTGTGT
1 TAAGAATTAATCTTGTGT
65577222 TAAGAATTAATCTTGTG
1 TAAGAATTAATCTTGTG
65577239 AGTCCTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.43
Consensus pattern (18 bp):
TAAGAATTAATCTTGTGT
Found at i:65579426 original size:46 final size:46
Alignment explanation
Indices: 65579328--65579484 Score: 145
Period size: 47 Copynumber: 3.4 Consensus size: 46
65579318 ATTGTCTAAG
* * * * * * *
65579328 CTTATGACACATTAAGTGGTTGTATTAACTAGAACATATTTAATAAA
1 CTTAAGACATATTAAATGGTTGAACTAATTAGAACATA-TTAATTAA
* *
65579375 CTTAAGACATGTTAAATGGTTGAACTAATTAGAACACATTAATTAA
1 CTTAAGACATATTAAATGGTTGAACTAATTAGAACATATTAATTAA
*** *
65579421 CTTAAGACATATT-AATTACTGAATCTAATTAGAACATATTAAATAGA
1 CTTAAGACATATTAAATGGTTGAA-CTAATTAGAACATATTAATTA-A
* *
65579468 CTCAAGACACATTAAAT
1 CTTAAGACATATTAAAT
65579485 ACTTAAACAA
Statistics
Matches: 90, Mismatches: 17, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
45 7 0.08
46 38 0.42
47 42 0.47
48 3 0.03
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (46 bp):
CTTAAGACATATTAAATGGTTGAACTAATTAGAACATATTAATTAA
Found at i:65583690 original size:28 final size:29
Alignment explanation
Indices: 65583650--65583777 Score: 93
Period size: 28 Copynumber: 4.5 Consensus size: 29
65583640 TGAGCATGAC
*
65583650 TATAAATGTGATTTCAGCCTAGT-GGCCA
1 TATAAATGTGATTTCAGCCTAATGGGCCA
**
65583678 TATAAATGTGATTTGGGCCTAATGGGCCA
1 TATAAATGTGATTTCAGCCTAATGGGCCA
* * ** *
65583707 CATAAATGTGA-ATGGGCCTGATGGGCCA
1 TATAAATGTGATTTCAGCCTAATGGGCCA
* ** *
65583735 TATGAAA-GAGA-TTGGGCCTAGTGGGCCA
1 TAT-AAATGTGATTTCAGCCTAATGGGCCA
*
65583763 TATATATGTGGATTT
1 TATAAATGT-GATTT
65583778 TTCTGGGCTT
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
27 2 0.02
28 58 0.71
29 20 0.24
30 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (29 bp):
TATAAATGTGATTTCAGCCTAATGGGCCA
Found at i:65589675 original size:16 final size:16
Alignment explanation
Indices: 65589654--65589685 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
65589644 GTTGTAATGC
65589654 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
65589670 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
65589686 TCTCAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:65591203 original size:28 final size:28
Alignment explanation
Indices: 65591161--65591272 Score: 111
Period size: 28 Copynumber: 4.0 Consensus size: 28
65591151 CATGACTGTA
*
65591161 AATGTGATTTAGGCCTAGT-GGCCATATG
1 AATGTGA-TTGGGCCTAGTGGGCCATATG
* * **
65591189 AATGTGATTTGGGCCTAATGGGCCACACA
1 AATGTGA-TTGGGCCTAGTGGGCCATATG
*
65591218 AATGTGAATGGGCCT-GATGGGCCATATG
1 AATGTGATTGGGCCTAG-TGGGCCATATG
* *
65591246 AAAGAGATTGGGCCTAGTGGGCCATAT
1 AATGTGATTGGGCCTAGTGGGCCATAT
65591273 ATAGGTATGT
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
28 54 0.79
29 14 0.21
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (28 bp):
AATGTGATTGGGCCTAGTGGGCCATATG
Found at i:65596328 original size:52 final size:52
Alignment explanation
Indices: 65596261--65596376 Score: 205
Period size: 52 Copynumber: 2.2 Consensus size: 52
65596251 GATATGACAT
*
65596261 TGTGCTAAGTGAAATATGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* *
65596313 TGTGCTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
65596365 TGTGCTAAGTGA
1 TGTGCTAAGTGA
65596377 GAAATTTCCC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:65596329 original size:28 final size:27
Alignment explanation
Indices: 65596261--65596376 Score: 154
Period size: 24 Copynumber: 4.4 Consensus size: 27
65596251 GATATGACAT
* *
65596261 TGTGCTAAGTGAAATATGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
65596288 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
65596313 TGTGCTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
65596340 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
65596364 TTGTGCTAAGTGA
1 -TGTGCTAAGTGA
65596377 GAAATTTCCC
Statistics
Matches: 79, Mismatches: 2, Indels: 15
0.82 0.02 0.16
Matches are distributed among these distances:
24 43 0.54
25 3 0.04
27 3 0.04
28 30 0.38
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:65596455 original size:51 final size:51
Alignment explanation
Indices: 65596400--65596620 Score: 343
Period size: 51 Copynumber: 4.3 Consensus size: 51
65596390 TGAACCTTAG
*
65596400 GAATAAAATGGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
65596451 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGGCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * **
65596502 GAATATAATAGCTTTGGATACAAGTGTAATACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
65596553 GAATAAAATAGCTTTGGACTCAAGGGTGGTACTAGGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
65596604 GAATAAAATAGCTTTGG
1 GAATAAAATAGCTTTGG
65596621 CTACAAGGGT
Statistics
Matches: 154, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 154 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:65596644 original size:102 final size:102
Alignment explanation
Indices: 65596400--65596649 Score: 349
Period size: 102 Copynumber: 2.5 Consensus size: 102
65596390 TGAACCTTAG
* * *
65596400 GAATAAAATGGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATATAATAGCT
1 GAATAAAATAGCTTTGG-CTACAAGTGTAGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCT
* * *
65596464 TTGGACACAAGTGTGGTACTATGTGAAGGGCACTTTAT
65 TTGGACACAAGGGTGGTACTAGGTGAAGGCCACTTTAT
* * *
65596502 GAATATAATAGCTTTGGATACAAGTGTAATACTATGTGAAGGCCACTTTGTGAATAAAATAGCTT
1 GAATAAAATAGCTTTGGCTACAAGTGTAGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTT
* *
65596567 TGGACTCAAGGGTGGTACTAGGTGAAGGCCACTTTGT
66 TGGACACAAGGGTGGTACTAGGTGAAGGCCACTTTAT
* * **
65596604 GAATAAAATAGCTTTGGCTACAAGGGTAGTAATAAATGAAGGCCAC
1 GAATAAAATAGCTTTGGCTACAAGTGTAGTACTATGTGAAGGCCAC
65596650 CATGTATCCG
Statistics
Matches: 129, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
102 129 1.00
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.29
Consensus pattern (102 bp):
GAATAAAATAGCTTTGGCTACAAGTGTAGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTT
TGGACACAAGGGTGGTACTAGGTGAAGGCCACTTTAT
Found at i:65605348 original size:16 final size:16
Alignment explanation
Indices: 65605329--65605359 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65605319 CTTCTTCACT
65605329 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
65605345 TACTTACTTACTTAA
1 TACTCACTTACTTAA
65605360 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:65605365 original size:20 final size:20
Alignment explanation
Indices: 65605326--65605365 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
65605316 AAACTTCTTC
* *
65605326 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
65605346 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
65605366 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:65605476 original size:23 final size:24
Alignment explanation
Indices: 65605438--65605482 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
65605428 TTTGCTCTTC
*
65605438 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
65605462 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
65605483 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:65605741 original size:55 final size:53
Alignment explanation
Indices: 65605551--65605805 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
65605541 ACACGGGTAC
* * * *
65605551 CTTACCATTGCCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
65605600 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
65605653 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* ***
65605708 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * * *
65605761 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
65605806 AAACCCTAAT
Statistics
Matches: 174, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
49 39 0.22
50 1 0.01
52 2 0.01
53 49 0.28
54 10 0.06
55 71 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:65605742 original size:108 final size:110
Alignment explanation
Indices: 65605598--65605798 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
65605588 ATCCTTTTGA
* *
65605598 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
65605661 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
65605706 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
65605771 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
65605799 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 27 0.32
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:65607143 original size:42 final size:42
Alignment explanation
Indices: 65607059--65607143 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 42
65607049 CGTCGTTTAC
* * *
65607059 TTGATGCCATAGTCCAACTATGGTCTTACATGAAGTCTCATA
1 TTGATGCCATAGTCCAACTATGGTCTTACACGAAATCACATA
65607101 TTGATGCCAT-GTCCAAGAC-ATGGTCTTACACGAAATCACATA
1 TTGATGCCATAGTCC-A-ACTATGGTCTTACACGAAATCACATA
65607143 T
1 T
65607144 CGACACCAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 4 0.11
42 32 0.84
43 2 0.05
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (42 bp):
TTGATGCCATAGTCCAACTATGGTCTTACACGAAATCACATA
Found at i:65607187 original size:48 final size:48
Alignment explanation
Indices: 65607104--65607374 Score: 306
Period size: 48 Copynumber: 5.8 Consensus size: 48
65607094 TCTCATATTG
* ** *
65607104 ATGCCATGT-CCAAGACATGGTCTTACACGAAATCACATATCGACACCA
1 ATGCCATGTCCCAA-ACATGGTCTTACATGGGATCACATATCGATACCA
* * *
65607152 ATGCCATATCCCAAATATGGTCTTACATGGGATCACATAGT-GATGCCA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATA-TCGATACCA
* * *
65607200 ATGCCGTGTCCCAGACATGGTCTTACATGGGATCAC----C--TACCG
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATACCA
* * * **
65607242 ATGCTATGTCGCAGACATGGTCTTACATGGGATCACATATCGATGTCA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATACCA
*
65607290 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATTCCA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATACCA
* *
65607338 ATGCCATGTCCTAAACATGGTCTTACATTGGATCACA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
65607375 ATGCCATAGC
Statistics
Matches: 188, Mismatches: 26, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
42 36 0.19
46 1 0.01
48 146 0.78
49 5 0.03
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATACCA
Found at i:65607310 original size:138 final size:138
Alignment explanation
Indices: 65607103--65607373 Score: 384
Period size: 138 Copynumber: 2.0 Consensus size: 138
65607093 GTCTCATATT
*
65607103 GATGCCATGTCCAAGACATGGTCTTACACGAAATCACATATCGACACCAATGCCATATCCCAAAT
1 GATGCCATGTCCAAGACATGGTCTTACACGAAATCACATATCGACACCAATGCCATATCCCAAAC
* *
65607168 ATGGTCTTACATGGGATCACATAGT-GATGCCAATGCCGTGTCCCAGACATGGTCTTACATGGGA
66 ATGGTCTTACATGGGATCACATA-TCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGA
65607232 TCACCTACC
130 TCACCTACC
* * ** *** *
65607241 GATGCTATGTCGC-AGACATGGTCTTACATGGGATCACATATCGATGTCAATGCCATGTCCCAAA
1 GATGCCATGTC-CAAGACATGGTCTTACACGAAATCACATATCGACACCAATGCCATATCCCAAA
* * *
65607305 CATGGTCTTACATGGGATCACATATCGATTCCAATGCCATGTCCTAAACATGGTCTTACATTGGA
65 CATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGA
65607370 TCAC
130 TCAC
65607374 AATGCCATAG
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
137 1 0.01
138 115 0.98
139 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (138 bp):
GATGCCATGTCCAAGACATGGTCTTACACGAAATCACATATCGACACCAATGCCATATCCCAAAC
ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGAT
CACCTACC
Found at i:65607397 original size:37 final size:37
Alignment explanation
Indices: 65607356--65607438 Score: 105
Period size: 37 Copynumber: 2.2 Consensus size: 37
65607346 TCCTAAACAT
* *
65607356 GGTCTTACAT-TGGATCACAATGCCATAGCCTAGCTAC
1 GGTCTTACATGT-CATCACAATGCCATAGCCCAGCTAC
* * *
65607393 GGTCTTACATGTCATTACGATGCCATAGCCCAGCTAT
1 GGTCTTACATGTCATCACAATGCCATAGCCCAGCTAC
65607430 GGTCTTACA
1 GGTCTTACA
65607439 CGTACGCAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 39 0.98
38 1 0.03
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (37 bp):
GGTCTTACATGTCATCACAATGCCATAGCCCAGCTAC
Found at i:65612872 original size:17 final size:17
Alignment explanation
Indices: 65612850--65612883 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
65612840 ATAATCAAAT
65612850 CAGTCAAATTCAAAGTC
1 CAGTCAAATTCAAAGTC
*
65612867 CAGTCAAATTCGAAGTC
1 CAGTCAAATTCAAAGTC
65612884 TAAGTCAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.24, G:0.15, T:0.24
Consensus pattern (17 bp):
CAGTCAAATTCAAAGTC
Found at i:65612993 original size:27 final size:27
Alignment explanation
Indices: 65612914--65613141 Score: 107
Period size: 27 Copynumber: 8.5 Consensus size: 27
65612904 AAGGGCAAAA
* * * *
65612914 TAGTCATTTTACCCTACAGGGGTATGT
1 TAGTAATTTTACACTACAAGGGTATTT
*
65612941 TAGTCATTTTACACTACAAGGGTATTT
1 TAGTAATTTTACACTACAAGGGTATTT
* *
65612968 TGGTAATTTTACACTACAAGGATA-TT
1 TAGTAATTTTACACTACAAGGGTATTT
* * * *
65612994 TCGACAATTTTACA-AATC-GGGGTA-TT
1 TAG-TAATTTTACACTA-CAAGGGTATTT
* * *
65613020 TCGATAATTTTACA-AACTGAGGGTATTT
1 TAG-TAATTTTACACTAC-AAGGGTATTT
** *
65613048 CGGTAATTTTACA-AACCAAGGGTATTT
1 TAGTAATTTTACACTA-CAAGGGTATTT
* **
65613075 T-GATAATTTTACA-AATCGGGGGTATTT
1 TAG-TAATTTTACACTA-CAAGGGTATTT
* *
65613102 CAGTAATTTTACAAACT-GAA-GGTATTT
1 TAGTAATTTTAC--ACTACAAGGGTATTT
65613129 TAGTAATTTTACA
1 TAGTAATTTTACA
65613142 AATCGGGGGT
Statistics
Matches: 164, Mismatches: 26, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
25 2 0.01
26 27 0.16
27 129 0.79
28 5 0.03
29 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.38
Consensus pattern (27 bp):
TAGTAATTTTACACTACAAGGGTATTT
Found at i:65613088 original size:54 final size:54
Alignment explanation
Indices: 65612957--65613245 Score: 277
Period size: 54 Copynumber: 5.4 Consensus size: 54
65612947 TTTTACACTA
* * * * * ** *
65612957 CAAGGGTATTTTGGTAATTTTACACTAC-AAGGATATTTCGACAATTTTACAAAT
1 CAAGGGTATTTCGATAATTTTACA-AACTGAGGGTATTTCGGTAATTTTACAAAC
*
65613011 C-GGGGTATTTCGATAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTCGATAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAAC
* * *
65613064 CAAGGGTATTTTGATAATTTTACAAA-TCGGGGGTATTTCAGTAATTTTACAAAC
1 CAAGGGTATTTCGATAATTTTACAAACT-GAGGGTATTTCGGTAATTTTACAAAC
* * * * * * *
65613118 TGAA-GGTATTT-TAGTAATTTTACAAA-TCGGGGGTACTTCAGTAATTTTCCAAAT
1 -CAAGGGTATTTCGA-TAATTTTACAAACT-GAGGGTATTTCGGTAATTTTACAAAC
*
65613172 C-AGAGGTATTTCGATAATTTTACAAACTGAGGGTACTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTCGATAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAAC
* *
65613226 CAGGGGTATTTCGGTAATTT
1 CAAGGGTATTTCGATAATTT
65613246 CTCTTTATTA
Statistics
Matches: 199, Mismatches: 26, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
52 3 0.02
53 43 0.22
54 148 0.74
55 5 0.03
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (54 bp):
CAAGGGTATTTCGATAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAAC
Found at i:65613136 original size:81 final size:80
Alignment explanation
Indices: 65612959--65613245 Score: 355
Period size: 81 Copynumber: 3.6 Consensus size: 80
65612949 TTACACTACA
* * * *
65612959 AGGGTATTTTGGTAATTTTACACTA-CAAGGATATTTCGACAATTTTACAAATCGGGGTATTTCG
1 AGGGTATTTCGGTAATTTTACA-AACCAAGGGTATTTCGATAATTTTACAAATCGGGGTATTTCG
65613023 ATAATTTTACAAACTG
65 ATAATTTTACAAACTG
*
65613039 AGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAATCGGGGGTATTTC-
1 AGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTCGATAATTTTACAAATC-GGGGTATTTCG
65613103 AGTAATTTTACAAACTG
65 A-TAATTTTACAAACTG
* ** * ** * * *
65613120 AAGGTATTTTAGTAATTTTACAAATCGGGGGTACTTC-AGTAATTTTCCAAATCAGAGGTATTTC
1 AGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTCGA-TAATTTTACAAATC-GGGGTATTTC
65613184 GATAATTTTACAAACTG
64 GATAATTTTACAAACTG
* * *
65613201 AGGGTACTTCGGTAATTTTACAAACCAGGGGTATTTCGGTAATTT
1 AGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTCGATAATTT
65613246 CTCTTTATTA
Statistics
Matches: 177, Mismatches: 24, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
79 1 0.01
80 48 0.27
81 127 0.72
82 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (80 bp):
AGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTCGATAATTTTACAAATCGGGGTATTTCGA
TAATTTTACAAACTG
Found at i:65613142 original size:27 final size:27
Alignment explanation
Indices: 65612999--65613245 Score: 224
Period size: 27 Copynumber: 9.2 Consensus size: 27
65612989 ATATTTCGAC
65612999 AATTTTACAAA-TCG-GGGTATTTC-GAT
1 AATTTTACAAACT-GAGGGTATTTCAG-T
*
65613025 AATTTTACAAACTGAGGGTATTTCGGT
1 AATTTTACAAACTGAGGGTATTTCAGT
** *
65613052 AATTTTACAAACCAAGGGTATTT-TGAT
1 AATTTTACAAACTGAGGGTATTTCAG-T
*
65613079 AATTTTACAAA-TCGGGGGTATTTCAGT
1 AATTTTACAAACT-GAGGGTATTTCAGT
* *
65613106 AATTTTACAAACTGAAGGTATTTTAGT
1 AATTTTACAAACTGAGGGTATTTCAGT
* *
65613133 AATTTTACAAA-TCGGGGGTACTTCAGT
1 AATTTTACAAACT-GAGGGTATTTCAGT
* *
65613160 AATTTTCCAAA-TCAGAGGTATTTC-GAT
1 AATTTTACAAACTGAG-GGTATTTCAG-T
* *
65613187 AATTTTACAAACTGAGGGTACTTCGGT
1 AATTTTACAAACTGAGGGTATTTCAGT
* *
65613214 AATTTTACAAAC-CAGGGGTATTTCGGT
1 AATTTTACAAACTGA-GGGTATTTCAGT
65613241 AATTT
1 AATTT
65613246 CTCTTTATTA
Statistics
Matches: 185, Mismatches: 23, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
26 17 0.09
27 161 0.87
28 7 0.04
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (27 bp):
AATTTTACAAACTGAGGGTATTTCAGT
Found at i:65613605 original size:28 final size:28
Alignment explanation
Indices: 65613563--65613624 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
65613553 GCCCCTTTAG
* *
65613563 GCCCAATCTCGTTCATATGGCCCATCAA
1 GCCCAATCACATTCATATGGCCCATCAA
*
65613591 GCCCAATCACATTCATATGGCCCATCAG
1 GCCCAATCACATTCATATGGCCCATCAA
65613619 GCCCAA
1 GCCCAA
65613625 CTACTTCCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.27, C:0.37, G:0.15, T:0.21
Consensus pattern (28 bp):
GCCCAATCACATTCATATGGCCCATCAA
Found at i:65615811 original size:40 final size:40
Alignment explanation
Indices: 65615732--65615935 Score: 297
Period size: 40 Copynumber: 5.1 Consensus size: 40
65615722 TGGGATTTAA
* *
65615732 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
65615771 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
65615811 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65615851 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65615891 CCGGA-ACTAGTCACTAGCACAAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCAC-AAATGCCTTCGGGACTTAGC
65615932 CCGG
1 CCGG
65615936 TTATCATCCA
Statistics
Matches: 152, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 17 0.11
40 110 0.72
41 24 0.16
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:65620218 original size:27 final size:28
Alignment explanation
Indices: 65620188--65620257 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
65620178 ATAATAAGTC
*
65620188 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
65620215 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
65620243 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65620258 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:65628130 original size:26 final size:28
Alignment explanation
Indices: 65628086--65628154 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
65628076 ATAATAAGTC
*
65628086 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
65628113 CGCACAC-TAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
65628140 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65628155 GTACAAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 15 0.39
27 16 0.42
28 7 0.18
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:65641035 original size:29 final size:29
Alignment explanation
Indices: 65641003--65641134 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
65640993 ATAGTGAATC
65641003 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
65641032 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
65641062 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
65641091 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
65641120 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
65641135 GTACAATTTT
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
29 71 0.71
30 29 0.29
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:65641095 original size:59 final size:58
Alignment explanation
Indices: 65641003--65641134 Score: 237
Period size: 59 Copynumber: 2.3 Consensus size: 58
65640993 ATAGTGAATC
65641003 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGCT
*
65641062 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
*
65641120 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
65641135 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 23 0.32
59 48 0.68
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (58 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
Found at i:65641143 original size:88 final size:89
Alignment explanation
Indices: 65641003--65641164 Score: 254
Period size: 88 Copynumber: 1.8 Consensus size: 89
65640993 ATAGTGAATC
* * * * *
65641003 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGCTCGCAC
1 CGCACACTTAGTGCTATATATTTTCAGCTCACACACTTAGTGCTATACAATTTTTAAACCCGCAC
65641067 ACTTAGTGCTATATATTTTCAGCT
66 ACTTAGTGCTATATATTTTCAGCT
* *
65641091 CGCACACTTAGTGCTATATATTTTCAGTTCACACACTTAGTGCTGTACAATTTTTAAACCCGCAC
1 CGCACACTTAGTGCTATATATTTTCAGCTCACACACTTAGTGCTATACAATTTTTAAACCCGCAC
65641156 ACTTAGTGC
66 ACTTAGTGC
65641165 CAATCTTGTC
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
88 46 0.70
89 20 0.30
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.36
Consensus pattern (89 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCACACACTTAGTGCTATACAATTTTTAAACCCGCAC
ACTTAGTGCTATATATTTTCAGCT
Found at i:65642879 original size:40 final size:40
Alignment explanation
Indices: 65642825--65643016 Score: 264
Period size: 40 Copynumber: 4.8 Consensus size: 40
65642815 GATGTCACAT
* *
65642825 ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
65642864 ACTCGCACCAATGCCTTTGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
65642904 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
65642944 ACTCGCACAAATGCCTTTGGGACTTAGCCCGGA-ACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
65642984 ACTAGCGCA-AAATGCCTTCGGGACTTAGCCCGG
1 ACT--CGCACAAATGCCTTCGGGACTTAGCCCGG
65643017 TTATCATCCA
Statistics
Matches: 137, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 7 0.05
40 103 0.75
41 23 0.17
42 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:65647057 original size:27 final size:26
Alignment explanation
Indices: 65647012--65647155 Score: 85
Period size: 27 Copynumber: 5.3 Consensus size: 26
65647002 GCAAAACAGT
* * * *
65647012 TATTTTACCCTATAGGGGTATGTCGG
1 TATTTTACACTACAAGGGTATGTCGA
* *
65647038 TCATTTTACACTACAAGGGTATTTTTGA
1 T-ATTTTACACTACAAGGGTA-TGTCGA
* *
65647066 TATTTTACACTACAAGGGTATTTTGA
1 TATTTTACACTACAAGGGTATGTCGA
* * *
65647092 TAATTTTACA-AATCGAGGGTATTTCGA
1 T-ATTTTACACTA-CAAGGGTATGTCGA
* * *
65647119 TAATTTTACA-AATCGAGGGTATTTCGA
1 T-ATTTTACACTA-CAAGGGTATGTCGA
65647146 TAATTTTACA
1 T-ATTTTACA
65647156 AATTGGGGGT
Statistics
Matches: 105, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
26 9 0.09
27 92 0.88
28 4 0.04
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.40
Consensus pattern (26 bp):
TATTTTACACTACAAGGGTATGTCGA
Found at i:65647138 original size:81 final size:82
Alignment explanation
Indices: 65647081--65647420 Score: 367
Period size: 81 Copynumber: 4.2 Consensus size: 82
65647071 TACACTACAA
*
65647081 GGGTATTTTGATAATTTTACAAA-TCGAGGGT-ATTTCGATAATTTTACAAATCGAGGGTATTTC
1 GGGTATTTCGATAATTTTACAAACT-GAGGGTAATTTCGATAATTTTACAAATCGAGGGTATTTC
**
65647144 GATAATTTTACAAATTGG
65 GATAATTTTACAAATCAG
* * * *
65647162 GGGTATTTCAATAATTTTACAAACTGGGGGTAATTT-GATAATTTCACAAATCGAGGGTATTT-T
1 GGGTATTTCGATAATTTTACAAACTGAGGGTAATTTCGATAATTTTACAAATCGAGGGTATTTCG
65647225 AGTAATTTTACAAATCAG
66 A-TAATTTTACAAATCAG
* * *
65647243 GGGTATTTCGGTAATTTTACAAACT-AGGGGTAATTTAG-TAATTTTACAAA-CTG-GGGTACTT
1 GGGTATTTCGATAATTTTACAAACTGA-GGGTAATTTCGATAATTTTACAAATC-GAGGGTATTT
* * *
65647304 CGGTAATTTTCCAAA-CTGG
64 CGATAATTTTACAAATC-AG
* * * * * *
65647323 GGGTATTTTGATAATTTTACAAACTGGGGGT-ACTTCGATAATTTTACAAACCGGGGGTACTTCG
1 GGGTATTTCGATAATTTTACAAACTGAGGGTAATTTCGATAATTTTACAAATCGAGGGTATTTCG
* *
65647387 ATAATTTTACAAACCGG
66 ATAATTTTACAAATCAG
*
65647404 GGGTATTTCGGTAATTT
1 GGGTATTTCGATAATTT
65647421 CTCTTTATTA
Statistics
Matches: 221, Mismatches: 25, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
79 5 0.02
80 61 0.28
81 148 0.67
82 7 0.03
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (82 bp):
GGGTATTTCGATAATTTTACAAACTGAGGGTAATTTCGATAATTTTACAAATCGAGGGTATTTCG
ATAATTTTACAAATCAG
Found at i:65647156 original size:27 final size:26
Alignment explanation
Indices: 65647053--65647420 Score: 316
Period size: 27 Copynumber: 13.7 Consensus size: 26
65647043 TTACACTACA
* * *
65647053 AGGGTATTTTTGAT-ATTTTACACTACA
1 AGGGTA-TTTCGATAATTTTACA-AACG
*
65647080 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAA-CG
65647107 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAA-CG
*
65647134 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAA-CG
* *
65647161 GGGGTATTTCAATAATTTTACAAACTG
1 AGGGTATTTCGATAATTTTACAAAC-G
* *
65647188 GGGGTAATTT-GATAATTTCACAAATCG
1 AGGGT-ATTTCGATAATTTTACAAA-CG
*
65647215 AGGGTATTT-TAGTAATTTTACAAATC-
1 AGGGTATTTCGA-TAATTTTACAAA-CG
* *
65647241 AGGGGTATTTCGGTAATTTTACAAACT
1 A-GGGTATTTCGATAATTTTACAAACG
*
65647268 AGGGGTAATTTAG-TAATTTTACAAACTG
1 A-GGGT-ATTTCGATAATTTTACAAAC-G
* * *
65647296 -GGGTACTTCGGTAATTTTCCAAACTG
1 AGGGTATTTCGATAATTTTACAAAC-G
* *
65647322 GGGGTATTTTGATAATTTTACAAACTG
1 AGGGTATTTCGATAATTTTACAAAC-G
* *
65647349 GGGGTACTTCGATAATTTTACAAACCG
1 AGGGTATTTCGATAATTTTACAAA-CG
* *
65647376 GGGGTACTTCGATAATTTTACAAACCG
1 AGGGTATTTCGATAATTTTACAAA-CG
* *
65647403 GGGGTATTTCGGTAATTT
1 AGGGTATTTCGATAATTT
65647421 CTCTTTATTA
Statistics
Matches: 300, Mismatches: 27, Indels: 28
0.85 0.08 0.08
Matches are distributed among these distances:
25 4 0.01
26 33 0.11
27 252 0.84
28 11 0.04
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (26 bp):
AGGGTATTTCGATAATTTTACAAACG
Found at i:65648119 original size:19 final size:19
Alignment explanation
Indices: 65648083--65648121 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
65648073 TTTTCATCAT
* *
65648083 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
65648102 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
65648121 A
1 A
65648122 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:65648642 original size:27 final size:28
Alignment explanation
Indices: 65648585--65648654 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
65648575 GTGACAGAGT
**
65648585 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTACGTGGCAGTGC
65648614 CACCAGAACAGATA-TACGTGGCAAG-GC
1 CACCAGAACAGATATTACGTGGC-AGTGC
*
65648641 CATCAGAACAGATA
1 CACCAGAACAGATA
65648655 ATTTGTGGCA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 21 0.57
28 9 0.24
29 7 0.19
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (28 bp):
CACCAGAACAGATATTACGTGGCAGTGC
Found at i:65648827 original size:28 final size:28
Alignment explanation
Indices: 65648780--65648844 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
65648770 AAATTAACCC
*
65648780 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
65648808 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
65648836 TAGGGGTAT
1 TAGGGGTAT
65648845 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:65653108 original size:18 final size:19
Alignment explanation
Indices: 65653059--65653108 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
65653049 AATTGGTTGT
*
65653059 TATGATGATATAGGTGTTAA
1 TATG-TGATATGGGTGTTAA
*
65653079 TATGTGAAATGGGTGTTAA
1 TATGTGATATGGGTGTTAA
*
65653098 -ATGTTATATGG
1 TATGTGATATGG
65653109 TTGAGTTCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 9 0.35
19 13 0.50
20 4 0.15
ACGTcount: A:0.32, C:0.00, G:0.28, T:0.40
Consensus pattern (19 bp):
TATGTGATATGGGTGTTAA
Found at i:65658838 original size:2 final size:2
Alignment explanation
Indices: 65658831--65658855 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
65658821 ATTTCAATTC
65658831 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
65658856 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:65664130 original size:15 final size:15
Alignment explanation
Indices: 65664074--65664138 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
65664064 TAAAGATAAC
*
65664074 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
65664088 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
65664103 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
65664118 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
65664133 AAGAAA
1 AAGAAA
65664139 AATAAGAAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:65667224 original size:49 final size:48
Alignment explanation
Indices: 65667151--65667293 Score: 198
Period size: 49 Copynumber: 2.9 Consensus size: 48
65667141 AGCCGAAGCT
* *
65667151 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
* *
65667199 AGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACT-TGACTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA-TGCGAC-CAAC
**
65667249 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC
65667294 TCACAATAGA
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
48 3 0.04
49 76 0.90
50 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (48 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
Found at i:65667231 original size:23 final size:23
Alignment explanation
Indices: 65667205--65667280 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
65667195 CAACAGTCTG
65667205 GTACACGTAGTAGCCTGCACTTA
1 GTACACGTAGTAGCCTGCACTTA
** * * *
65667228 GTACTACACACTTGACT-CACCATCTA
1 GTAC-ACGTAGTAGCCTGCA-C-T-TA
*
65667254 ATACACGTAGTAGCCTGCACTTA
1 GTACACGTAGTAGCCTGCACTTA
65667277 GTAC
1 GTAC
65667281 TACACATGCG
Statistics
Matches: 36, Mismatches: 12, Indels: 10
0.62 0.21 0.17
Matches are distributed among these distances:
23 11 0.31
24 9 0.25
25 9 0.25
26 7 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (23 bp):
GTACACGTAGTAGCCTGCACTTA
Found at i:65671396 original size:66 final size:68
Alignment explanation
Indices: 65671320--65671506 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
65671310 TAGTACCACT
*
65671320 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
65671382 CACG
65 CACG
65671386 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
65671451 ATCACG
63 ATCACG
65671457 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
65671507 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:65671431 original size:71 final size:71
Alignment explanation
Indices: 65671343--65671506 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
65671333 CGATTTGTCT
65671343 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
65671408 CTTTCA
66 CTTTCA
65671414 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
65671479 CTTTCA
66 CTTTCA
65671485 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
65671507 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:65671544 original size:71 final size:70
Alignment explanation
Indices: 65671343--65671540 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
65671333 CGATTTGTCT
* * *
65671343 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
65671408 CTTTCA
65 CTTTCA
* * *
65671414 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
65671479 CTTTCA
65 CTTTCA
* *
65671485 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
65671541 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:65678966 original size:66 final size:68
Alignment explanation
Indices: 65678890--65679076 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
65678880 TAGTACCACT
*
65678890 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
65678952 CACG
65 CACG
65678956 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
65679021 ATCACG
63 ATCACG
65679027 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
65679077 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:65679001 original size:71 final size:71
Alignment explanation
Indices: 65678913--65679076 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
65678903 CGATTTGTCT
65678913 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
65678978 CTTTCA
66 CTTTCA
65678984 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
65679049 CTTTCA
66 CTTTCA
65679055 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
65679077 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:65679114 original size:71 final size:70
Alignment explanation
Indices: 65678913--65679110 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
65678903 CGATTTGTCT
* * *
65678913 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
65678978 CTTTCA
65 CTTTCA
* * *
65678984 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
65679049 CTTTCA
65 CTTTCA
* *
65679055 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
65679111 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:65685979 original size:26 final size:27
Alignment explanation
Indices: 65685950--65686072 Score: 128
Period size: 27 Copynumber: 4.6 Consensus size: 27
65685940 TTAGTTTACT
*
65685950 AAATTACTGAAATACCTCCAG-TTGTA
1 AAATTACCGAAATACCTCCAGTTTGTA
* *
65685976 AAATTACC-AAAGTACCCCCAGTTTATA
1 AAATTACCGAAA-TACCTCCAGTTTGTA
* *
65686003 AAATTACCCAAATATCCTCGA-TTTGTA
1 AAATTACCGAAATA-CCTCCAGTTTGTA
*
65686030 AAATTACCGAAATACC-CTCAGTTTGCA
1 AAATTACCGAAATACCTC-CAGTTTGTA
*
65686057 AAATTACTGAAATACC
1 AAATTACCGAAATACC
65686073 CTCGACATGT
Statistics
Matches: 81, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
25 4 0.05
26 18 0.22
27 52 0.64
28 7 0.09
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATTACCGAAATACCTCCAGTTTGTA
Found at i:65686010 original size:27 final size:26
Alignment explanation
Indices: 65685950--65686102 Score: 116
Period size: 27 Copynumber: 5.7 Consensus size: 26
65685940 TTAGTTTACT
*
65685950 AAATTACTGAAATA-CCTCCAG-TTGTA
1 AAATTAC-CAAATACCCT-CAGTTTGTA
* *
65685976 AAATTACCAAAGTACCCCCAGTTTATA
1 AAATTACCAAA-TACCCTCAGTTTGTA
*
65686003 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTA-CCAAATACCCTCAG-TTTGTA
*
65686030 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACC-AAATACCCTCAGTTTGTA
* **
65686057 AAATTACTGAAATACCCTC-GACATGTA
1 AAATTAC-CAAATACCCTCAG-TTTGTA
*
65686084 AAATTATCAAAGTACCCTC
1 AAATTACCAAA-TACCCTC
65686103 GAATTACAGA
Statistics
Matches: 103, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
25 3 0.03
26 19 0.18
27 75 0.73
28 6 0.06
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (26 bp):
AAATTACCAAATACCCTCAGTTTGTA
Found at i:65686101 original size:54 final size:53
Alignment explanation
Indices: 65685942--65686120 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 53
65685932 AGAATACTTT
* * * *
65685942 AGTTTACTAAATTACTGAAATACCTCCAGTTGTAAAATTACCAAAGTACCCCC
1 AGTTTACAAAATTACTGAAATACCTCGACTTGTAAAATTACCAAAGTACCCTC
* ** *
65685995 AGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAA-TACCCTC
1 AGTTTACAAAATTACTGAAATA-CCTCGACTTGTAAAATTACC-AAAGTACCCTC
* * *
65686049 AGTTTGCAAAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACTGAAATA-CCTCGACTTGTAAAATTACCAAAGTACCCTC
*
65686103 -GAATTACAGAAATTACTG
1 AG-TTTACA-AAATTACTG
65686121 TTTTACCCTC
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
53 22 0.21
54 70 0.67
55 12 0.12
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (53 bp):
AGTTTACAAAATTACTGAAATACCTCGACTTGTAAAATTACCAAAGTACCCTC
Found at i:65686155 original size:80 final size:80
Alignment explanation
Indices: 65685999--65686288 Score: 208
Period size: 81 Copynumber: 3.6 Consensus size: 80
65685989 ACCCCCAGTT
* * ** *** * *
65685999 TATAAAATTACCCAAA-TATCCTCGATTTGTAAAATTACCGAAATACCCTCAGTTTGCAAAATTA
1 TATAAAATTA-CCAAAGTACCCTCGAATTACAAAATTACCGTTTTACCCTCA-ATTACAAAATTA
**
65686063 CTGA-AATACCCTCGACA
64 CT-ATTTTACCCTCGACA
* * * * *
65686080 TGTAAAATTATCAAAGTACCCTCGAATTACAGAAATTACTGTTTTACCCTCGA-TACAGAATTAC
1 TATAAAATTACCAAAGTACCCTCGAATTACA-AAATTACCGTTTTACCCTCAATTACAAAATTAC
**
65686144 TATTTTACCCTCGATT
65 TATTTTACCCTCGACA
**** * *
65686160 TATAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTACAAAATTAT
1 TATAAAATTACCAAAGTACCCTCGAATTACAAAATTACCGTTTTACCCTCAA-TTACAAAATTAC
**
65686225 TATTTTACCCTCGATT
65 TATTTTACCCTCGACA
* * **** * *
65686241 TAGAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCC
1 TATAAAATTACCAAAGTACCCTCGAATTACAAAATTACCGTTTTACCC
65686289 CTAGGGTGTT
Statistics
Matches: 172, Mismatches: 32, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
79 20 0.12
80 47 0.27
81 90 0.52
82 15 0.09
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (80 bp):
TATAAAATTACCAAAGTACCCTCGAATTACAAAATTACCGTTTTACCCTCAATTACAAAATTACT
ATTTTACCCTCGACA
Found at i:65686176 original size:27 final size:27
Alignment explanation
Indices: 65686096--65686288 Score: 246
Period size: 27 Copynumber: 7.2 Consensus size: 27
65686086 ATTATCAAAG
* *
65686096 TACCCTCGAATTACAGAAATTACTGTTT
1 TACCCTCGATTTACA-AAATTACCGTTT
* **
65686124 TACCCTCGA--TACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
65686149 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
65686176 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* ***
65686203 TACCCTCAATTTACAAAATTATTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
65686230 TACCCTCGATTTAGAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
65686257 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
65686284 TACCC
1 TACCC
65686289 CTAGGGTGTT
Statistics
Matches: 143, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
25 19 0.13
26 4 0.03
27 111 0.78
28 9 0.06
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:65686241 original size:81 final size:79
Alignment explanation
Indices: 65686096--65686288 Score: 287
Period size: 81 Copynumber: 2.4 Consensus size: 79
65686086 ATTATCAAAG
* * * *
65686096 TACCCTCGAATTACAGAAATTACTGTTTTACCCTCGATACAGAATTACTATTTTACCCTCGATTT
1 TACCCTCGATTTACA-AAATTACCGTTTTACCCTCAATACAAAATTACTATTTTACCCTCGATTT
*
65686161 ATAAAATTACCGTTT
65 AGAAAATTACCGTTT
*
65686176 TACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTACAAAATTATTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCAA--TACAAAATTACTATTTTACCCTCGATT
*
65686241 TAGAGAATTACCGTTT
64 TAGAAAATTACCGTTT
*
65686257 TACCCTCGATTTACAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACCGTTTTACCC
65686289 CTAGGGTGTT
Statistics
Matches: 103, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
79 19 0.18
80 14 0.14
81 70 0.68
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (79 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCAATACAAAATTACTATTTTACCCTCGATTTA
GAAAATTACCGTTT
Found at i:65686730 original size:31 final size:31
Alignment explanation
Indices: 65686695--65686804 Score: 127
Period size: 31 Copynumber: 3.5 Consensus size: 31
65686685 TTGCATTCAC
*
65686695 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * * *
65686726 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
65686757 ATTCTGATTCTGATTCTGATT--CTG-TCACCTG
1 ATTCTGATTCTGATTCTG-TTACCTGAT-A-CTG
65686788 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
65686805 CATTTTGATT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
29 1 0.01
30 2 0.03
31 63 0.94
32 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:65686734 original size:6 final size:6
Alignment explanation
Indices: 65686695--65686825 Score: 99
Period size: 6 Copynumber: 21.3 Consensus size: 6
65686685 TTGCATTCAC
* * *
65686695 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
65686744 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
65686794 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
65686826 AATGTTTCTT
Statistics
Matches: 98, Mismatches: 16, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
5 5 0.05
6 81 0.83
7 9 0.09
8 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Done.