Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 225 of 378
Found at i:66631549 original size:80 final size:81
Alignment explanation
Indices: 66631381--66631569 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
66631371 GCTGGAAATT
* * * *
66631381 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
66631446 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
66631462 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
66631525 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
66631541 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
66631570 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:66633143 original size:30 final size:30
Alignment explanation
Indices: 66633107--66633192 Score: 113
Period size: 30 Copynumber: 2.9 Consensus size: 30
66633097 CGGCCATGAT
66633107 ACACGGGCATGTGGCCTT-CCCATGTGCCTC
1 ACACGGGCATGTGG-CTTACCCATGTGCCTC
* *
66633137 ACACGGGCGTGTGGTTTACCCATGTGCCTC
1 ACACGGGCATGTGGCTTACCCATGTGCCTC
*
66633167 ACACGGGCGA-GTGGTTTACCCATGTG
1 ACACGGGC-ATGTGGCTTACCCATGTG
66633193 GAAGTGCCTA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
29 2 0.04
30 49 0.96
ACGTcount: A:0.15, C:0.30, G:0.30, T:0.24
Consensus pattern (30 bp):
ACACGGGCATGTGGCTTACCCATGTGCCTC
Found at i:66662594 original size:20 final size:21
Alignment explanation
Indices: 66662569--66662607 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
66662559 TAATTTCTTC
*
66662569 TTTTATTCCTATT-TTTATTT
1 TTTTATTCATATTATTTATTT
66662589 TTTTATTCATATTATTTAT
1 TTTTATTCATATTATTTAT
66662608 GATATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATTCATATTATTTATTT
Found at i:66664742 original size:80 final size:80
Alignment explanation
Indices: 66664549--66664745 Score: 261
Period size: 80 Copynumber: 2.5 Consensus size: 80
66664539 TGAAACCCGG
* * * *
66664549 GCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCTGGGCTAAGACCCGAAGGCATTCGTGCA
1 GCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCTGGGCTAAGACCCGAAGGCATTCGTGCA
*** *
66664614 AGTTGTTAAATCCGG
66 AGTTACCAAATCCGA
* * *
66664629 GCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCTGGGCTAAGACCCGAAGGCATTGGTGC
1 GCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCTGGGCTAAGACCCGAAGGCATTCGTGC
66664693 AAGTTACCAAATCCGA
65 AAGTTACCAAATCCGA
* *
66664709 GTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATC
1 GCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATC
66664746 CGGTTAGATT
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 95 0.95
81 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
GCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCTGGGCTAAGACCCGAAGGCATTCGTGCA
AGTTACCAAATCCGA
Found at i:66664747 original size:40 final size:40
Alignment explanation
Indices: 66664545--66664748 Score: 214
Period size: 40 Copynumber: 5.1 Consensus size: 40
66664535 TGAATGAAAC
* ** *
66664545 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG-TTATAT
* *
66664585 CTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
*
66664625 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
* * *** *
66664665 CTGGGCTAAGACCCGAAGGCATTGGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
* * ** *
66664705 CCGAGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTATAT
66664745 CCGG
1 CCGG
66664749 TTAGATTCCG
Statistics
Matches: 135, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
40 130 0.96
41 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
Found at i:66670429 original size:40 final size:40
Alignment explanation
Indices: 66670370--66670573 Score: 205
Period size: 40 Copynumber: 5.1 Consensus size: 40
66670360 TGAATGAAAC
* ** *
66670370 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
* *
66670410 CCGAGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
66670450 CCGGGCTAAGACCCGAAGGCATTCGTACGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* * * *** *
66670490 CCGGGCTAAGACCCAAAGGCATTGGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* * ** *
66670530 CCAGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
66670570 CCGG
1 CCGG
66670574 TTAGATTCCG
Statistics
Matches: 134, Mismatches: 28, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
40 129 0.96
41 5 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:66670567 original size:80 final size:80
Alignment explanation
Indices: 66670373--66670573 Score: 233
Period size: 80 Copynumber: 2.5 Consensus size: 80
66670363 ATGAAACCCG
* * * * * *
66670373 GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGAGCTAAGACCCGAAGGCATTCGTGC
1 GGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCAAAGGCATTCGTGC
* *** *
66670438 GAGTTGTTAAATCCG
66 AAGTTACCAAATCCA
* * * *
66670453 GGCTAAGACCCGAAGGC-ATTCGTACGAGTTGTTATATCCGGGCTAAGACCCAAAGGCATTGGTG
1 GGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCGGGCTAAGACCCAAAGGCATTCGTG
66670517 CAAGTTACCAAATCCA
65 CAAGTTACCAAATCCA
* *
66670533 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 GGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGG
66670574 TTAGATTCCG
Statistics
Matches: 99, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
79 2 0.02
80 94 0.95
81 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
GGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCAAAGGCATTCGTGC
AAGTTACCAAATCCA
Found at i:66678277 original size:17 final size:18
Alignment explanation
Indices: 66678255--66678288 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
66678245 TCACATTGAA
66678255 GTGTTTT-AGTGAAAACT
1 GTGTTTTCAGTGAAAACT
*
66678272 GTGTTTTCATTGAAAAC
1 GTGTTTTCAGTGAAAAC
66678289 CCTTCCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACT
Found at i:66679401 original size:29 final size:29
Alignment explanation
Indices: 66679326--66679436 Score: 95
Period size: 29 Copynumber: 3.9 Consensus size: 29
66679316 TACATACATG
66679326 CATATGGCCCACTT-GGCCC--ATC-TCATT
1 CATATGGCCCA-TTAGGCCCAAATCAT-ATT
* ** *
66679353 CATATGGCCCATCAATCCCAATTCATATT
1 CATATGGCCCATTAGGCCCAAATCATATT
* **
66679382 CATATGGCCTATTAGGCCCAAATCACCTT
1 CATATGGCCCATTAGGCCCAAATCATATT
* *
66679411 TATATGGCCCGTTAGGCCCAAATCAT
1 CATATGGCCCATTAGGCCCAAATCAT
66679437 GTTATATTCA
Statistics
Matches: 65, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
26 1 0.02
27 14 0.22
29 49 0.75
30 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.29
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCATATT
Found at i:66681137 original size:27 final size:27
Alignment explanation
Indices: 66681099--66681161 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
66681089 TTGTATTGTA
66681099 TTAGATCGAGAACAAAGAAAATCAGAC
1 TTAGATCGAGAACAAAGAAAATCAGAC
*
66681126 TTAGATCGAGAACAAAGAAAATCGGAC
1 TTAGATCGAGAACAAAGAAAATCAGAC
66681153 TT-GATCGAG
1 TTAGATCGAG
66681162 GAAAGTATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
26 7 0.20
27 28 0.80
ACGTcount: A:0.46, C:0.14, G:0.22, T:0.17
Consensus pattern (27 bp):
TTAGATCGAGAACAAAGAAAATCAGAC
Found at i:66692378 original size:13 final size:14
Alignment explanation
Indices: 66692350--66692383 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
66692340 TAATATTTCA
*
66692350 ATTATTTTTATGTT
1 ATTATATTTATGTT
66692364 ATTATATTT-TGTT
1 ATTATATTTATGTT
66692377 ATTATAT
1 ATTATAT
66692384 GAGATGTGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (14 bp):
ATTATATTTATGTT
Found at i:66692607 original size:50 final size:50
Alignment explanation
Indices: 66692532--66692808 Score: 272
Period size: 50 Copynumber: 5.5 Consensus size: 50
66692522 GTGAGTCACG
*
66692532 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTTGCA
* * ** * * ** *
66692582 TGTGTAGTACTAACTGTAGGCTACTATGTGTACCCG-TTAACTTCGAT-CA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGA-TAGGTTGCA
* * * * * ** **
66692631 TGTGTGTAGTACTAAGTGTAGGCTAATACATGTATCAGATGGTTAAATCACA
1 --TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTTGCA
* *
66692683 TGTGTCGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTTGCA
* * * *
66692733 TGTGTAGTACTAAGT-CTAGGCTACTACTTATACCATATTGATAGGTTGTA
1 TGTGTAGTACTAAGTGC-AGGCTACTACATGTACCAGATTGATAGGTTGCA
66692783 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
66692809 TGCATACTAG
Statistics
Matches: 183, Mismatches: 37, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
49 6 0.03
50 142 0.78
51 32 0.17
52 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTTGCA
Found at i:66692715 original size:101 final size:101
Alignment explanation
Indices: 66692531--66692716 Score: 237
Period size: 101 Copynumber: 1.8 Consensus size: 101
66692521 TGTGAGTCAC
* * * ** **
66692531 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTTGCATGTGTAGTACTAAC
1 GTGTGTAGTACTAAGTGCAGGCTAATACATGTACCAGATGGATAAATCACATGTGTAGTACTAAC
* **
66692596 TGTAGGCTACTATGTGTACCCGTTAACTTCGATCAT
66 TGCAGGCTACTACATGTACCCGTTAACTTCGATCAT
* * * * *
66692632 GTGTGTAGTACTAAGTGTAGGCTAATACATGTATCAGATGGTTAAATCACATGTGTCGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTAATACATGTACCAGATGGATAAATCACATGTGTAGTACTAAC
66692697 TGCAGGCTACTACATGTACC
66 TGCAGGCTACTACATGTACC
66692717 AGATTGATAG
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
101 70 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (101 bp):
GTGTGTAGTACTAAGTGCAGGCTAATACATGTACCAGATGGATAAATCACATGTGTAGTACTAAC
TGCAGGCTACTACATGTACCCGTTAACTTCGATCAT
Found at i:66693040 original size:16 final size:16
Alignment explanation
Indices: 66693019--66693050 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
66693009 AGAATGGAGT
66693019 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
66693035 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
66693051 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:66693607 original size:17 final size:18
Alignment explanation
Indices: 66693575--66693610 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
66693565 ATTAGTAACT
*
66693575 ATGACTCGAGAAATCAGC
1 ATGACTAGAGAAATCAGC
66693593 ATGACTAGA-AAATCAGC
1 ATGACTAGAGAAATCAGC
66693610 A
1 A
66693611 AAAGTGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.17
Consensus pattern (18 bp):
ATGACTAGAGAAATCAGC
Found at i:66696168 original size:2 final size:2
Alignment explanation
Indices: 66696161--66696186 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
66696151 GCTCTATTTG
66696161 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
66696187 GGGAAGGTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66696337 original size:15 final size:15
Alignment explanation
Indices: 66696317--66696355 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
66696307 TATGATATTG
66696317 TATCTTGGATTTC-C
1 TATCTTGGATTTCTC
66696331 TTATCTTGGATTTCTC
1 -TATCTTGGATTTCTC
66696347 TATCTTGGA
1 TATCTTGGA
66696356 GATCTTGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 22 0.96
16 1 0.04
ACGTcount: A:0.15, C:0.18, G:0.15, T:0.51
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:66712058 original size:27 final size:26
Alignment explanation
Indices: 66712021--66712135 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 26
66712011 AGCATGGCTG
*
66712021 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
66712047 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
*
66712074 CCAGAACAGATATTTGTGGC-GTAGCCA
1 CCAGAACAGATA-TTGTGACAG-AGCCA
* * *
66712101 CCAGAAACAGATGTTTGTGGCATAGCCA
1 CCAG-AACAGAT-ATTGTGACAGAGCCA
66712129 CCAGAAC
1 CCAGAAC
66712136 GCTTCCTCCA
Statistics
Matches: 79, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
26 13 0.16
27 43 0.54
28 23 0.29
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:66712118 original size:28 final size:27
Alignment explanation
Indices: 66712045--66712134 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 27
66712035 GTGACAGAGT
* *
66712045 CACCAGATACAGATATTGTGGCAG-AGC
1 CACCAGAAACAGATTTTGTGGC-GTAGC
66712072 CACCAG-AACAGATATTTGTGGCGTAGC
1 CACCAGAAACAGAT-TTTGTGGCGTAGC
*
66712099 CACCAGAAACAGATGTTTGTGGCATAGC
1 CACCAGAAACAGAT-TTTGTGGCGTAGC
66712127 CACCAGAA
1 CACCAGAA
66712135 CGCTTCCTCC
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 7 0.12
27 22 0.39
28 27 0.48
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAAACAGATTTTGTGGCGTAGC
Found at i:66712133 original size:55 final size:53
Alignment explanation
Indices: 66712021--66712135 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 53
66712011 AGCATGGCTG
* *
66712021 CCAGAACAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTGTGGCAGAGCCA
* * *
66712074 CCAGAACAGATATTTGTGGC-GTAGCCACCAGAAACAGATGTTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAG-AGCCACCAGAAACAGAT-ATTGTGGCAGAGCCA
66712129 CCAGAAC
1 CCAGAAC
66712136 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
53 13 0.24
54 21 0.39
55 20 0.37
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTGTGGCAGAGCCA
Found at i:66716707 original size:46 final size:46
Alignment explanation
Indices: 66716655--66716827 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
66716645 TGGTTGAGCA
66716655 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
66716701 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
66716746 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
66716794 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66716828 GGGGCAGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66716811 original size:93 final size:93
Alignment explanation
Indices: 66716652--66716822 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
66716642 GGATGGTTGA
**
66716652 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
66716717 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
66716745 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
66716810 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
66716823 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:66720544 original size:29 final size:29
Alignment explanation
Indices: 66720454--66720628 Score: 210
Period size: 29 Copynumber: 6.0 Consensus size: 29
66720444 ACTCGATTTC
* * **
66720454 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
66720483 GCACACATAGTGCCATACCCTTCAAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
66720511 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
66720541 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
66720570 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
66720599 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
66720628 G
1 G
66720629 TTTCACATTG
Statistics
Matches: 127, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
28 2 0.02
29 124 0.98
30 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:66727175 original size:29 final size:29
Alignment explanation
Indices: 66727085--66727230 Score: 152
Period size: 29 Copynumber: 5.0 Consensus size: 29
66727075 ACTCGATTTC
* * **
66727085 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
66727114 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
66727142 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
66727172 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
66727201 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
66727230 G
1 G
66727231 TTTCACATTG
Statistics
Matches: 97, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
28 2 0.02
29 94 0.97
30 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:66730639 original size:46 final size:46
Alignment explanation
Indices: 66730589--66730761 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
66730579 TGGTTGAGCA
66730589 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
66730635 TCCGAACTCGTTGAGTTAAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
66730680 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66730728 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66730762 GGGGCAGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66730750 original size:93 final size:93
Alignment explanation
Indices: 66730586--66730756 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
66730576 GGATGGTTGA
**
66730586 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATACCCGAACTCGTTGAGT
*
66730651 TAAGTCCGAGTTCGTGAAATGTAACTAG
66 TAAGTCCAAGTTCGTGAAATGTAACTAG
*
66730679 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATACCCGAACTCGTTGAGT
*
66730744 TGAGTCCAAGTTC
66 TAAGTCCAAGTTC
66730757 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATACCCGAACTCGTTGAGT
TAAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:66733541 original size:27 final size:27
Alignment explanation
Indices: 66733510--66733571 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
66733500 ATTTACTAAA
66733510 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
* * *
66733537 TTA-CCCTTAGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
66733563 ATACCCCTA
1 ATACCCCTA
66733572 GGGTTAATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.71
27 6 0.21
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:66733748 original size:27 final size:26
Alignment explanation
Indices: 66733676--66733789 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 26
66733666 AGAGGAAGCA
66733676 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTATGCCAC-AATATCTG
*
66733703 TTTCTGGTAGCTATGCCACAAATATCTG
1 -TTCTGGTGGCTATGCCAC-AATATCTG
* *
66733731 TTCTGGTGGCTCTACCACAATATCTG
1 TTCTGGTGGCTATGCCACAATATCTG
* * *
66733757 TATCTGGTGACTCTGTCACAATATCTG
1 T-TCTGGTGGCTATGCCACAATATCTG
66733784 TTCTGG
1 TTCTGG
66733790 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.18
27 38 0.49
28 26 0.33
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATCTG
Found at i:66735608 original size:4 final size:4
Alignment explanation
Indices: 66735599--66735631 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
66735589 TTACTATTAA
66735599 TATG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG T
66735632 GTTTTTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:66736659 original size:17 final size:16
Alignment explanation
Indices: 66736633--66736673 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
66736623 AATAATGTTT
66736633 AAATAGAAATAAAAGTAA
1 AAATA-AAATAAAAGT-A
*
66736651 AAATAAAATAATAGTA
1 AAATAAAATAAAAGTA
66736667 AAATAAA
1 AAATAAA
66736674 CGGACTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 9 0.41
18 5 0.23
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (16 bp):
AAATAAAATAAAAGTA
Found at i:66738766 original size:13 final size:13
Alignment explanation
Indices: 66738748--66738772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66738738 GGTGCACACG
66738748 GTCGTGTCGCACC
1 GTCGTGTCGCACC
66738761 GTCGTGTCGCAC
1 GTCGTGTCGCAC
66738773 GCCCGTGTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.36, G:0.32, T:0.24
Consensus pattern (13 bp):
GTCGTGTCGCACC
Found at i:66743100 original size:29 final size:29
Alignment explanation
Indices: 66743058--66743167 Score: 114
Period size: 29 Copynumber: 3.8 Consensus size: 29
66743048 ATAATATGAT
**
66743058 TTGGGCCTAATGGGCCATATGAATGCGAA
1 TTGGGCCTAATGGGCCATATGAATAAGAA
* * * *
66743087 TTGGGCCTAGTGGGCCTTAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATAAGAA
* * *
66743116 CTGGGCCAAATGGGCCATTTGAATAAG-A
1 TTGGGCCTAATGGGCCATATGAATAAGAA
* *
66743144 TTGGGCCTAGTGGACCATATGAAT
1 TTGGGCCTAATGGGCCATATGAAT
66743168 GTATGTAGGG
Statistics
Matches: 64, Mismatches: 17, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
28 20 0.31
29 44 0.69
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.25
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATAAGAA
Found at i:66746039 original size:16 final size:16
Alignment explanation
Indices: 66746018--66746050 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
66746008 TTGTAACGGC
66746018 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
*
66746034 CCAAAAATCTCGAAAT
1 CCAAAAATCCCGAAAT
66746050 C
1 C
66746051 TTAAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.30, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:66747537 original size:29 final size:29
Alignment explanation
Indices: 66747492--66747610 Score: 127
Period size: 29 Copynumber: 4.2 Consensus size: 29
66747482 GTGAGCATGA
*
66747492 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
66747520 ATATGAATGTGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
66747549 ATAAGAATATGAACTGGGCC-AGATGGGCC
1 ATATGAATATGAATTGGGCCTA-ATGGGCC
* * * *
66747578 ATTTGAATAAG-ATTAGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
66747606 ATATG
1 ATATG
66747611 CATGTATATA
Statistics
Matches: 74, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
28 21 0.28
29 53 0.72
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:66747559 original size:58 final size:57
Alignment explanation
Indices: 66747496--66747608 Score: 147
Period size: 58 Copynumber: 2.0 Consensus size: 57
66747486 GCATGAATAT
** ** *
66747496 AATATGATTTGGGCCTA-ATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAACTGGGCC-AGATGGGCCATATGAATAAG-ATTAGGCCTAGTGGGCCATAAG
*
66747554 AATATGAACTGGGCCAGATGGGCCATTTGAATAAGATTAGGCCTAGTGGGCCATA
1 AATATGAACTGGGCCAGATGGGCCATATGAATAAGATTAGGCCTAGTGGGCCATA
66747609 TGCATGTATA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 20 0.42
58 28 0.58
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (57 bp):
AATATGAACTGGGCCAGATGGGCCATATGAATAAGATTAGGCCTAGTGGGCCATAAG
Found at i:66750263 original size:30 final size:30
Alignment explanation
Indices: 66750220--66750276 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
66750210 CCAACTATGA
*
66750220 CACACGAGTGTGTGGTCTACCCGTGTGCTT
1 CACACGAGCGTGTGGTCTACCCGTGTGCTT
* *
66750250 CACACGGGCGTGTGGTTTACCCGTGTG
1 CACACGAGCGTGTGGTCTACCCGTGTG
66750277 GAAGTGCCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.12, C:0.26, G:0.33, T:0.28
Consensus pattern (30 bp):
CACACGAGCGTGTGGTCTACCCGTGTGCTT
Found at i:66754333 original size:40 final size:40
Alignment explanation
Indices: 66754193--66754385 Score: 196
Period size: 40 Copynumber: 4.8 Consensus size: 40
66754183 GGATATAGCG
* * * **
66754193 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
* * * *
66754233 GCTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
* *
66754273 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTGGTA
* * *
66754313 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTGGTA
66754353 ACTCAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 ACTC-GCACAAATGCCTTCGGGACTTAGCCCGGA
66754386 CATCATTCGA
Statistics
Matches: 133, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.02
40 118 0.89
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
Found at i:66757527 original size:28 final size:28
Alignment explanation
Indices: 66757456--66757530 Score: 98
Period size: 27 Copynumber: 2.7 Consensus size: 28
66757446 AGCATATAGT
*
66757456 AAATCCGCACACTTAGTGCTATAAAATC
1 AAATTCGCACACTTAGTGCTATAAAATC
** * *
66757484 -AGCTCGCACACATAGTGCTATATAATC
1 AAATTCGCACACTTAGTGCTATAAAATC
66757511 AAATTCGCACACTTAGTGCT
1 AAATTCGCACACTTAGTGCT
66757531 GTACAAATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (28 bp):
AAATTCGCACACTTAGTGCTATAAAATC
Found at i:66757692 original size:16 final size:17
Alignment explanation
Indices: 66757660--66757692 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
66757650 CATCATTCCA
*
66757660 TACACATACATTTCATT
1 TACACATACAATTCATT
66757677 TACACAT-CAATTCATT
1 TACACATACAATTCATT
66757693 AAACACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.39
Consensus pattern (17 bp):
TACACATACAATTCATT
Found at i:66758751 original size:25 final size:24
Alignment explanation
Indices: 66758715--66758771 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
66758705 TTTTTTTCCT
66758715 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* * *
66758740 TTTCTTTTTTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
66758764 TATTCTTT
1 T-TTCTTT
66758772 CTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:66764517 original size:18 final size:16
Alignment explanation
Indices: 66764484--66764518 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
66764474 TTCAATTTCA
66764484 TAATTTACTCACTATT
1 TAATTTACTCACTATT
66764500 TAATTCTACTCTACTATT
1 TAATT-TACTC-ACTATT
66764518 T
1 T
66764519 TTATGGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 5 0.29
18 7 0.41
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (16 bp):
TAATTTACTCACTATT
Found at i:66771906 original size:30 final size:30
Alignment explanation
Indices: 66771848--66771908 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
66771838 GTTTAATACG
** *
66771848 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACATTTACCCCTA
* *
66771878 AACTTTTGCATAATTACACATTTACCCCTA
1 AACTTTGGCAAAATTACACATTTACCCCTA
66771908 A
1 A
66771909 GCTCGGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.36
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACATTTACCCCTA
Found at i:66773175 original size:46 final size:46
Alignment explanation
Indices: 66773107--66773289 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
66773097 TATATATACA
* * * *
66773107 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
66773153 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
66773199 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
66773245 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
66773290 ATACACTTCC
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:66773334 original size:47 final size:47
Alignment explanation
Indices: 66773263--66773594 Score: 531
Period size: 47 Copynumber: 7.1 Consensus size: 47
66773253 ACACATTTCG
* * * * * * *
66773263 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTCATCA
* *
66773310 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
66773357 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
66773404 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
66773451 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
66773498 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * **
66773545 CATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
66773592 CAT
1 CAT
66773595 AAAATCCTAA
Statistics
Matches: 271, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 270 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:66777323 original size:30 final size:30
Alignment explanation
Indices: 66777289--66777347 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
66777279 TTTACGGGCC
* *
66777289 TAGGGGCCAAAGTGAAAATATGTGAAAGTT
1 TAGGGGCCAAAATGAAAATATGTAAAAGTT
* * *
66777319 TAGGGGTCAAAATGTAAATTTGTAAAAGT
1 TAGGGGCCAAAATGAAAATATGTAAAAGT
66777348 ATGATTTTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.05, G:0.27, T:0.27
Consensus pattern (30 bp):
TAGGGGCCAAAATGAAAATATGTAAAAGTT
Found at i:66777604 original size:18 final size:20
Alignment explanation
Indices: 66777568--66777614 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
66777558 AGTTGTAAGT
66777568 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
66777588 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
66777607 ATGATATA
1 AT-ATATA
66777615 ACCTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:66778041 original size:51 final size:51
Alignment explanation
Indices: 66777964--66778146 Score: 226
Period size: 51 Copynumber: 3.6 Consensus size: 51
66777954 TCGTTGTGAG
66777964 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
* * * * * * * ** *
66778015 TCACGTGTTTAGTACTAAGTGTAGGCTACTACGTGTATCAGAT-GGTT-AA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
*
66778064 GTCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGTTAACTTCGA
1 -TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
* *
66778116 TCATGTGTGTAGTACTAAGTGCAAGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
66778147 CGTGTATCTG
Statistics
Matches: 107, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
49 1 0.01
50 39 0.36
51 66 0.62
52 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
Found at i:66778086 original size:50 final size:50
Alignment explanation
Indices: 66777962--66778246 Score: 250
Period size: 50 Copynumber: 5.7 Consensus size: 50
66777952 ATTCGTTGTG
* * * * *
66777962 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTT-
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTTA
* * * * *
66778012 CGATCACGTGTTTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA
* * * * * *
66778063 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGTTAACTT-
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTTA
* * * * * *
66778113 CGATCATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCTGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA
* ** * *
66778164 AGTCATGTGTACAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA
* * *
66778214 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
66778247 TGCGTACTAG
Statistics
Matches: 186, Mismatches: 44, Indels: 10
0.77 0.18 0.04
Matches are distributed among these distances:
50 111 0.60
51 75 0.40
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA
Found at i:66778144 original size:101 final size:101
Alignment explanation
Indices: 66777962--66778196 Score: 389
Period size: 101 Copynumber: 2.3 Consensus size: 101
66777952 ATTCGTTGTG
*
66777962 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTTTAG
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAG
* *
66778027 TACTAAGTGTAGGCTACTACGTGTATCAGATGGTTA
66 TACTAAGTGCAAGCTACTACGTGTATCAGATGGTTA
* *
66778063 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGTTAACTTCGATCATGTGTGTAG
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAG
*
66778128 TACTAAGTGCAAGCTACTACGTGTATCTGATGGTTA
66 TACTAAGTGCAAGCTACTACGTGTATCAGATGGTTA
* **
66778164 AGTCATGTGTACAGTACTAAGTGCAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
66778197 CGTGTACCAG
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 124 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (101 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAG
TACTAAGTGCAAGCTACTACGTGTATCAGATGGTTA
Found at i:66778474 original size:16 final size:16
Alignment explanation
Indices: 66778453--66778484 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
66778443 AGAATGGAGT
66778453 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
66778469 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
66778485 GAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:66781850 original size:30 final size:30
Alignment explanation
Indices: 66781816--66781876 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
66781806 TCCTTAACTC
66781816 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
66781846 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
66781876 A
1 A
66781877 GGCTCGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:66784535 original size:40 final size:40
Alignment explanation
Indices: 66784456--66784613 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
66784446 TTCGAATGAT
* * * *
66784456 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
66784496 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
66784536 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
66784576 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
66784614 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:66784634 original size:80 final size:80
Alignment explanation
Indices: 66784456--66784643 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
66784446 TTCGAATGAT
* *
66784456 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
66784521 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
66784536 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
66784597 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
66784617 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
66784644 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:66792608 original size:40 final size:40
Alignment explanation
Indices: 66792529--66792686 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
66792519 TTCGAATGAT
* * * *
66792529 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
66792569 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
66792609 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
66792649 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
66792687 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:66792707 original size:80 final size:80
Alignment explanation
Indices: 66792529--66792716 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
66792519 TTCGAATGAT
* *
66792529 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
66792594 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
66792609 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
66792670 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
66792690 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
66792717 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:66796848 original size:77 final size:80
Alignment explanation
Indices: 66796709--66796888 Score: 242
Period size: 77 Copynumber: 2.3 Consensus size: 80
66796699 TCGAATGATG
* *
66796709 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
66796774 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * **
66796788 TTCCGGGCTAAG-CCCGAAGGCATGGTGC-GAGTTATTAAATCCGGGTTAAG-TCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
66796850 TGTGCGAGTTACTATA
65 TGTGCGAGTTACTATA
* *
66796866 ACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAT
66796889 TTGAACGAGT
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
77 35 0.39
78 29 0.33
79 14 0.16
80 11 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:66796871 original size:39 final size:39
Alignment explanation
Indices: 66796709--66796891 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 39
66796699 TCGAATGATG
* *
66796709 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
66796749 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
66796789 TCCGGGCTAAGCCCGAAGGCA-TGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
66796827 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
66796867 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
66796892 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 33 0.27
39 31 0.25
40 51 0.41
41 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:66815617 original size:3 final size:3
Alignment explanation
Indices: 66815609--66815825 Score: 98
Period size: 3 Copynumber: 72.0 Consensus size: 3
66815599 CCCTATATAT
66815609 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * *** *
66815654 TT- TTA -TA TTG TTA TT- TGTT TTA TTT TTA ACC TTA TTT TTA -TA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* * **
66815696 TTA TATA TTA -TA TAA TTA TT- TTA TTA TATA TTA TTT TTCA CAAA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TT-A -TTA TTA
*
66815743 TTA TTA TT- TTA -CA TTA TTA TTTA TATA TTA TTA TGTCA TT- TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA T-TA TTA TTA T-T-A TTA TTA TTA
* * *
66815788 -TA TTA TTA TACA TTT TTA TCTA TATA TTA TTA TCA TTA
1 TTA TTA TTA T-TA TTA TTA T-TA T-TA TTA TTA TTA TTA
66815826 AAGGTTTTTA
Statistics
Matches: 161, Mismatches: 30, Indels: 46
0.68 0.13 0.19
Matches are distributed among these distances:
2 22 0.14
3 110 0.68
4 27 0.17
5 2 0.01
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:66815769 original size:44 final size:44
Alignment explanation
Indices: 66815699--66815820 Score: 124
Period size: 44 Copynumber: 2.8 Consensus size: 44
66815689 TTTTATATTA
* *
66815699 TATATTA-TATA-ATTATTTTATTATATATTATT-TTTCACAAAT
1 TATATTATTATACATTATTAT-TTATATATTATTATGTCACAAAT
* ****
66815741 TATTATTATTTTACATTATTATTTATATATTATTATGTCATTTTT
1 TA-TATTATTATACATTATTATTTATATATTATTATGTCACAAAT
* *
66815786 TATATTATTATACATTTTTATCTATATATTATTAT
1 TATATTATTATACATTATTATTTATATATTATTAT
66815821 CATTAAAGGT
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
42 2 0.03
43 5 0.08
44 45 0.68
45 14 0.21
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.61
Consensus pattern (44 bp):
TATATTATTATACATTATTATTTATATATTATTATGTCACAAAT
Found at i:66815804 original size:20 final size:22
Alignment explanation
Indices: 66815766--66815817 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 22
66815756 TTATTATTTA
*
66815766 TATATTATTATGTCATTTT-T-
1 TATATTATTATGACATTTTATC
66815786 TATATTATTAT-ACATTTTTATC
1 TATATTATTATGACA-TTTTATC
66815808 TATA-TATTAT
1 TATATTATTAT
66815818 TATCATTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 2 0.07
20 15 0.54
21 7 0.25
22 4 0.14
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.62
Consensus pattern (22 bp):
TATATTATTATGACATTTTATC
Found at i:66816108 original size:16 final size:15
Alignment explanation
Indices: 66816083--66816139 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 15
66816073 ATATATTTTA
66816083 TATTTTTTATATAAT
1 TATTTTTTATATAAT
66816098 TATTTTCTTATA-AAT
1 TATTTT-TTATATAAT
66816113 ATATTTTTTATTATATAT
1 -TATTTTTTA-TATA-AT
*
66816131 TATATTTTA
1 TATTTTTTA
66816140 AATTTATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
15 12 0.33
16 13 0.36
17 9 0.25
18 2 0.06
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
TATTTTTTATATAAT
Found at i:66816109 original size:14 final size:15
Alignment explanation
Indices: 66816081--66816123 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 15
66816071 CAATATATTT
66816081 TATATTTTTTATATAA
1 TATATTTTTTATA-AA
66816097 T-TATTTTCTTATAAA
1 TATATTTT-TTATAAA
66816112 TATATTTTTTAT
1 TATATTTTTTAT
66816124 TATATATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
TATATTTTTTATAAA
Found at i:66816128 original size:14 final size:14
Alignment explanation
Indices: 66816076--66816131 Score: 51
Period size: 14 Copynumber: 3.8 Consensus size: 14
66816066 TAAACCAATA
*
66816076 TATTTTATATTTTT
1 TATTATATATTTTT
66816090 TA-TATAATTATTTTCT
1 TATTAT-A-TATTTT-T
*
66816106 TATAAATATATTTTT
1 TAT-TATATATTTTT
66816121 TATTATATATT
1 TATTATATATT
66816132 ATATTTTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
13 2 0.06
14 10 0.29
15 10 0.29
16 9 0.26
17 1 0.03
18 2 0.06
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (14 bp):
TATTATATATTTTT
Found at i:66816163 original size:26 final size:26
Alignment explanation
Indices: 66816115--66816164 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
66816105 TTATAAATAT
* * * *
66816115 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
66816141 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
66816165 TTTATTATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:66818188 original size:42 final size:43
Alignment explanation
Indices: 66818123--66818222 Score: 141
Period size: 42 Copynumber: 2.3 Consensus size: 43
66818113 GATTTGAGAT
*
66818123 TTACATGTAAGACCATGTTTGGGACA-TCGGCATCG-TATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGT-GGCATCGATATTTGA
* * *
66818165 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGA
66818208 TTACATGTAAGACCA
1 TTACATGTAAGACCA
66818223 CATCTAGGAC
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 29 0.59
43 20 0.41
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGA
Found at i:66818239 original size:43 final size:43
Alignment explanation
Indices: 66818082--66818240 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
66818072 TATGTGTTTT
* * * *
66818082 CATGTAAGACCACGTCTGGAATGTTGGCAACGAT-TTGAGATTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTA
* * * * *
66818126 CATGTAAGACCATGTTTGGGACATCGGCATCG-TATTTGATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
*
66818168 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTA
* *
66818211 CATGTAAGACCACATCTAGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
66818241 TGTACGAGCC
Statistics
Matches: 91, Mismatches: 18, Indels: 13
0.75 0.15 0.11
Matches are distributed among these distances:
42 28 0.31
43 35 0.38
44 28 0.31
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:66820431 original size:19 final size:20
Alignment explanation
Indices: 66820398--66820435 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
66820388 TTATAATATC
*
66820398 ATAAATAATATGAATAAAAA
1 ATAAATAATAGGAATAAAAA
66820418 ATAAA-AATAGGAATAAAA
1 ATAAATAATAGGAATAAAA
66820436 GAAGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (20 bp):
ATAAATAATAGGAATAAAAA
Found at i:66820939 original size:25 final size:24
Alignment explanation
Indices: 66820850--66820915 Score: 96
Period size: 24 Copynumber: 2.8 Consensus size: 24
66820840 CAAAAACTAA
***
66820850 GTGGCACTATGTGTGCGAGATTCC
1 GTGGCACTATGTGTGCGAGAAAAC
*
66820874 ATGGCACTATGTGTGCGAGAAAAC
1 GTGGCACTATGTGTGCGAGAAAAC
66820898 GTGGCACTATGTGTGCGA
1 GTGGCACTATGTGTGCGA
66820916 ATAAGTAAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (24 bp):
GTGGCACTATGTGTGCGAGAAAAC
Found at i:66824525 original size:31 final size:31
Alignment explanation
Indices: 66824478--66824539 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
66824468 GTTGCGAGTT
* *
66824478 AGAGATTCTGACGTTCCTAAGACTGCTTTCA
1 AGAGATTCTGACGTTCCTAAAACTACTTTCA
* *
66824509 AGAGATTTTGATGTTCCTAAAACTACTTTCA
1 AGAGATTCTGACGTTCCTAAAACTACTTTCA
66824540 GAACGAGATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (31 bp):
AGAGATTCTGACGTTCCTAAAACTACTTTCA
Found at i:66827809 original size:25 final size:22
Alignment explanation
Indices: 66827775--66827834 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 22
66827765 AAGGTTATGC
66827775 GGCACTATGTGCGAAAAAACTAAGT
1 GGCACTATGTGCGAAAAAAC---GT
*
66827800 GGCACTATGTATGCGAGAAAACGT
1 GGCACTATG--TGCGAAAAAACGT
66827824 GGCACTATGTG
1 GGCACTATGTG
66827835 TGCGAATAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
22 2 0.06
24 11 0.34
25 9 0.28
27 10 0.31
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (22 bp):
GGCACTATGTGCGAAAAAACGT
Found at i:66834189 original size:13 final size:13
Alignment explanation
Indices: 66834171--66834195 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66834161 TAATTTATAT
66834171 GTGTGAAAATTTC
1 GTGTGAAAATTTC
66834184 GTGTGAAAATTT
1 GTGTGAAAATTT
66834196 TATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:66838782 original size:39 final size:40
Alignment explanation
Indices: 66838670--66838854 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
66838660 TCGAATGATG
* * * *
66838670 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
66838710 TCCGGACTAAGAT-CTGAAGGCATTCGTGTGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
66838750 TCCGGACTAAGAT-CCG-AGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
66838789 TCCAGG-TTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
66838830 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
66838855 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 1 0.01
39 33 0.27
40 81 0.66
41 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:66838876 original size:79 final size:79
Alignment explanation
Indices: 66838725--66838877 Score: 172
Period size: 79 Copynumber: 1.9 Consensus size: 79
66838715 ACTAAGATCT
* **
66838725 GAAGGCATTCGTGTGAGTTACTAAATCCGGACTAAGATCCGAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAGGCATTTGAACGAGTTACTAAAT
66838790 CCAGGTTAAGTCCC
66 CCAGGTTAAGTCCC
* *
66838804 GAAGGCA-TCTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAG-TAGC
1 GAAGGCATTC-GTGCGAGTTACTA-AATCCGGACTAAGAT-CCG-AGGCATTTGAACGAGTTA-C
*
66838865 TATATCC-GGTTAA
61 TAAATCCAGGTTAA
66838878 ACTCCGAAGG
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
78 3 0.05
79 38 0.60
80 22 0.35
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (79 bp):
GAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAGGCATTTGAACGAGTTACTAAAT
CCAGGTTAAGTCCC
Found at i:66845373 original size:79 final size:80
Alignment explanation
Indices: 66845227--66845409 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
66845217 TCGAATGATG
* *
66845227 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATATCGGACTAAGATCCGAAGGCATTCG
1 TCCGGGCTAAGACCGAAGGCATTTGTGCTAAGTGACTAAATCGGACTAAGATCCGAAGGCATTCG
66845291 TGCGAGTTACTA-AA
66 TGCGAGTTACTATAA
* * * **
66845305 TCCGGACTAAGACCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-T
1 TCCGGGCTAAGACCGAAGGCATTTGTGCTAAGTGACTAAAT-CGGACTAAGAT-CCGAAGGCATT
66845367 CTGTGCGAGTTACTATAA
64 C-GTGCGAGTTACTATAA
* *
66845385 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-ACCGAAGGCATTTG
66845410 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 30 0.34
79 44 0.49
80 15 0.17
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGACCGAAGGCATTTGTGCTAAGTGACTAAATCGGACTAAGATCCGAAGGCATTCG
TGCGAGTTACTATAA
Found at i:66845416 original size:40 final size:40
Alignment explanation
Indices: 66845227--66845409 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
66845217 TCGAATGATG
* * *
66845227 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
66845266 T-CGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
66845305 TCCGGACTAAG-ACCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
66845344 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
66845385 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
66845410 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
38 8 0.06
39 54 0.43
40 61 0.49
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:66845431 original size:79 final size:79
Alignment explanation
Indices: 66845278--66845432 Score: 192
Period size: 79 Copynumber: 2.0 Consensus size: 79
66845268 GGACTAAGAT
**
66845278 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGACCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGACCGAAGGCATTTGAACGAGTTACTAA
66845343 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
66845357 CCGAAGGCA-TCTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 CCGAAGGCATTC-GTGCGAGTTACTA-AATCCGGACTAAG-ACCGAAGGCATTTGAACGAGTTA-
*
66845419 CTATATCC-GGTTAA
62 CTAAATCCGGGTTAA
66845433 ACTCCGAAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
78 2 0.03
79 38 0.58
80 26 0.39
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGACCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:66851288 original size:13 final size:13
Alignment explanation
Indices: 66851270--66851294 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66851260 TAATTTATAT
66851270 GTGTGAAAATTTC
1 GTGTGAAAATTTC
66851283 GTGTGAAAATTT
1 GTGTGAAAATTT
66851295 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:66853967 original size:55 final size:53
Alignment explanation
Indices: 66853845--66854030 Score: 230
Period size: 55 Copynumber: 3.5 Consensus size: 53
66853835 TTACCATTGT
* * *
66853845 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATGC
1 CATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAATGC
* * *
66853898 CATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTCTAGTAACTCATCAATGC
1 CATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAATGC
* * * *
66853953 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGC
1 CATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAATGC
*
66854007 CATGCCTTGGCATGGTCTTACATG
1 CATGCCTTGACATGGTCTTACATG
66854031 ATATCCTTAT
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.02
53 31 0.27
54 35 0.31
55 44 0.39
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (53 bp):
CATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAATGC
Found at i:66854072 original size:47 final size:47
Alignment explanation
Indices: 66854017--66854138 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
66854007 CATGCCTTGG
* *
66854017 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
66854064 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
66854111 CATGGTCTTACATGGTATGCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
66854139 GTGCCAATAC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:66854255 original size:45 final size:45
Alignment explanation
Indices: 66854187--66854272 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
66854177 CCTTAATCAA
*
66854187 TGCCGATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGCCT
1 TGCCAATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGCCT
* * *
66854232 TGCCAATGTCATGTCTTGACATGGTCTTACATGGTATCCTT
1 TGCCAATGCCATGTCTTGACATGGTCTTACACGGGATCCTT
66854273 AACCGTCAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (45 bp):
TGCCAATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGCCT
Found at i:66854356 original size:44 final size:44
Alignment explanation
Indices: 66854276--66854359 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
66854266 TATCCTTAAC
* * *
66854276 CGTCAATTCCTCCTTAAATGCCATGTTATGAACATGGACTTTTT
1 CGTCAATTCCTCATTAAATGCCATGGTATCAACATGGACTTTTT
* *
66854320 CGTCAATTCTTCATTAATTGCCATGGTA-CAACCATGGACT
1 CGTCAATTCCTCATTAAATGCCATGGTATCAA-CATGGACT
66854360 CTGAGATATC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 2 0.06
44 32 0.94
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (44 bp):
CGTCAATTCCTCATTAAATGCCATGGTATCAACATGGACTTTTT
Found at i:66854535 original size:45 final size:45
Alignment explanation
Indices: 66854484--66854573 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
66854474 AATGCTACTC
66854484 AACTTACATACTTACATTCTCAATCTCATCATATCATCAACTTAA
1 AACTTACATACTTACATTCTCAATCTCATCATATCATCAACTTAA
*
66854529 AACTTACATACTTATATTCTCAATCTCATCATATCATCAACTTAA
1 AACTTACATACTTACATTCTCAATCTCATCATATCATCAACTTAA
66854574 CTTATTCTCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.38, C:0.26, G:0.00, T:0.37
Consensus pattern (45 bp):
AACTTACATACTTACATTCTCAATCTCATCATATCATCAACTTAA
Found at i:66861752 original size:43 final size:42
Alignment explanation
Indices: 66861704--66861862 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 42
66861694 AGTATATATA
*
66861704 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAACGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAA-GTCG
* * * *
66861747 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAGA-TACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAAGT-CG
* * *
66861789 AT-CTCGATGTCCCAGACATGGTCTTACACATAAAACAAAAGTCG
1 ATGC-CAATGTCCCAGACATGGTCTTACACGT-AATC-AAAGTCG
* *
66861833 ATGCCAACGTCCCTA-ACGTGGTCTTACACG
1 ATGCCAATGTCCC-AGACATGGTCTTACACG
66861863 AAAACGTATA
Statistics
Matches: 93, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
41 2 0.02
42 26 0.28
43 36 0.39
44 26 0.28
45 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAAGTCG
Found at i:66867115 original size:48 final size:48
Alignment explanation
Indices: 66866986--66867157 Score: 186
Period size: 48 Copynumber: 3.6 Consensus size: 48
66866976 AAATGTGTCT
* ** * * *
66866986 GTGTAAGACCATGCCTGGGACATGGCATCAATGATGATATATATGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCCA
**
66867034 GTGTAAGACCATGTCTAAGACATGGCATCGGTGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCCA
** * *
66867082 GTGTAAGATAATGTCTGGGACATGGCATTGGTGATGATATGTG-GATTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTG--CCA
* *
66867131 -TCTAAGACCATGTCGGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
66867158 TGGTACTTTA
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
47 1 0.01
48 101 0.97
49 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCCA
Found at i:66872451 original size:40 final size:40
Alignment explanation
Indices: 66872342--66872557 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
66872332 CGGATGATAA
* * *
66872342 CCGGGCTATGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
66872382 CCGGGCTAAG-CCCGAA-GCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66872420 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
66872460 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
66872500 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
66872540 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
66872558 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
38 27 0.17
39 30 0.18
40 106 0.65
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:66875650 original size:35 final size:35
Alignment explanation
Indices: 66875604--66875673 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
66875594 AAGAATCATC
*
66875604 TTTCATATTTTATTTTTATGTTTCTTTGCTTGAGG
1 TTTCATATTTTATTTTTATGTTTCTTTACTTGAGG
66875639 TTTCATATTTTATTTTTATGTTTCTTTACTTGAGG
1 TTTCATATTTTATTTTTATGTTTCTTTACTTGAGG
66875674 ACAAGCAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.16, C:0.09, G:0.13, T:0.63
Consensus pattern (35 bp):
TTTCATATTTTATTTTTATGTTTCTTTACTTGAGG
Found at i:66876598 original size:236 final size:237
Alignment explanation
Indices: 66876178--66876644 Score: 855
Period size: 236 Copynumber: 2.0 Consensus size: 237
66876168 CAACTTGGTC
66876178 AATAGTGTTTTGTAAGTATGGGTTCCAAAACGGAAACAGTTAAGGAATCACGAAAAGGCTAGGTG
1 AATAGTGTTTTGTAAGTATGGGTTCCAAAACGGAAACAGTTAAGGAATCACGAAAAGGCTAGGTG
* * *
66876243 AAGAATGTAAGTAATGTCCTAAATATGCTAAGGGTTAGAAATAGTCACAAAGCAATGTATAGTGT
66 AAGAATGTAAGTAATGTACTAAATATGCTAAGGGTTAGAAATAGCCACAAAGCAATGTATAGCGT
66876308 CTATGTTAGGATGAAGAAAGGTACTCGCCAAAGTCAAGTTGAAAAACAAAGAATAATGAGATGAT
131 CTATGTTAGGATGAAGAAAGGTACTCGCCAAAGTCAAGTTGAAAAACAAAGAATAATGAGATGAT
66876373 AATGAAATCACCAGATGCATTGTACTAAGAT-GGTATAGGTA
196 AATGAAATCACCAGATGCATTGTACTAAGATAGGTATAGGTA
*
66876414 AATAGTGTTTTGTAAGTATGGGTTCCAAAATGGAAACAGTTAAGGAATCACGAAAAGGCTAGGTG
1 AATAGTGTTTTGTAAGTATGGGTTCCAAAACGGAAACAGTTAAGGAATCACGAAAAGGCTAGGTG
* *
66876479 AAGAATGTAAGTAATGTACTAAATATGCTAAGGGTTAGGAATAGCCACAAAGCAATGTATGGCGT
66 AAGAATGTAAGTAATGTACTAAATATGCTAAGGGTTAGAAATAGCCACAAAGCAATGTATAGCGT
* *
66876544 CTATGTTAGGATGAAGAAAGGTACTCGCCAAAGTCAAGTTGAAGAACGAAGAATAATGAGATGAT
131 CTATGTTAGGATGAAGAAAGGTACTCGCCAAAGTCAAGTTGAAAAACAAAGAATAATGAGATGAT
66876609 AATGAAATCACCAGATGCATTGTACTAAGATAGGTA
196 AATGAAATCACCAGATGCATTGTACTAAGATAGGTA
66876645 AATGGAGTTT
Statistics
Matches: 222, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
236 218 0.98
237 4 0.02
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.25
Consensus pattern (237 bp):
AATAGTGTTTTGTAAGTATGGGTTCCAAAACGGAAACAGTTAAGGAATCACGAAAAGGCTAGGTG
AAGAATGTAAGTAATGTACTAAATATGCTAAGGGTTAGAAATAGCCACAAAGCAATGTATAGCGT
CTATGTTAGGATGAAGAAAGGTACTCGCCAAAGTCAAGTTGAAAAACAAAGAATAATGAGATGAT
AATGAAATCACCAGATGCATTGTACTAAGATAGGTATAGGTA
Found at i:66879088 original size:37 final size:36
Alignment explanation
Indices: 66879047--66879190 Score: 116
Period size: 37 Copynumber: 3.9 Consensus size: 36
66879037 ATAATCCAAT
66879047 GAGGTCAGCAAGACTCAGCTATATGGCATGATCTAGG
1 GAGGTCAGCAAGACTC-GCTATATGGCATGATCTAGG
*
66879084 GAGGTCCGCTAA-ACTCGCCTATATGGCATGATCT-GG
1 GAGGTCAGC-AAGACTCG-CTATATGGCATGATCTAGG
* * * * * *
66879120 GAAGGTTC-GCCAGA-TCCATCTTTAAGGCATAATCCAGG
1 G-AGG-TCAGCAAGACT-C-GCTATATGGCATGATCTAGG
*
66879158 GAGGTCAGCTAGACTCGCTTATATGGCATGATC
1 GAGGTCAGCAAGACTCGC-TATATGGCATGATC
66879191 CAAGAAGGTT
Statistics
Matches: 84, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
36 9 0.11
37 67 0.80
38 8 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (36 bp):
GAGGTCAGCAAGACTCGCTATATGGCATGATCTAGG
Found at i:66879181 original size:74 final size:74
Alignment explanation
Indices: 66879071--66879256 Score: 221
Period size: 74 Copynumber: 2.5 Consensus size: 74
66879061 TCAGCTATAT
* * * * ***
66879071 GGCATGATCTAGGGAGGTCCGCTAAACTCGCCTATATGGCATGATCTGGGAAGGTTCGCCAGATC
1 GGCATAATCCAGGGAGGTCAGCTAGACTCGCCTATATGGCATGATCCAAGAAGGTTCGCCAGATC
*
66879136 CATCTTTAA
66 CACCTTTAA
* * *
66879145 GGCATAATCCAGGGAGGTCAGCTAGACTCGCTTATATGGCATGATCCAAGAAGGTTTGCCAGATT
1 GGCATAATCCAGGGAGGTCAGCTAGACTCGCCTATATGGCATGATCCAAGAAGGTTCGCCAGATC
*
66879210 CACCTTTGA
66 CACCTTTAA
** *
66879219 GGCATAATCCAATGAGGTCAACTAGACAT-GCCTATATG
1 GGCATAATCCAGGGAGGTCAGCTAGAC-TCGCCTATATG
66879257 CCATAATCTA
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
74 94 0.99
75 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (74 bp):
GGCATAATCCAGGGAGGTCAGCTAGACTCGCCTATATGGCATGATCCAAGAAGGTTCGCCAGATC
CACCTTTAA
Found at i:66879223 original size:111 final size:111
Alignment explanation
Indices: 66878958--66879199 Score: 281
Period size: 111 Copynumber: 2.2 Consensus size: 111
66878948 GGCCATGGCC
* * ** * * * * *
66878958 ATGGCATGGTCCAAGAAAGTTAGCCAGACTCATCTACATGGCATGATCCAGGTAA-GTTCGCCAA
1 ATGGCATGATCCAAGAAGGTCCGCCAAACTCACCTATATGGCATGAT-CTGGGAAGGTTCGCCAA
*
66879022 ATCCACCTTTAAGGCATAATCCAATGAGGTCAGCAAGACTCAGCTAT
65 ATCCACCTTTAAGGCATAATCCAAGGAGGTCAGCAAGACTCAGCTAT
* * * * * *
66879069 ATGGCATGATCTAGGGAGGTCCGCTAAACTCGCCTATATGGCATGATCTGGGAAGGTTCGCCAGA
1 ATGGCATGATCCAAGAAGGTCCGCCAAACTCACCTATATGGCATGATCTGGGAAGGTTCGCCAAA
* * *
66879134 TCCATCTTTAAGGCATAATCCAGGGAGGTCAGCTAGACTC-GCTTAT
66 TCCACCTTTAAGGCATAATCCAAGGAGGTCAGCAAGACTCAGC-TAT
66879180 ATGGCATGATCCAAGAAGGT
1 ATGGCATGATCCAAGAAGGT
66879200 TTGCCAGATT
Statistics
Matches: 107, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
110 7 0.07
111 100 0.93
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (111 bp):
ATGGCATGATCCAAGAAGGTCCGCCAAACTCACCTATATGGCATGATCTGGGAAGGTTCGCCAAA
TCCACCTTTAAGGCATAATCCAAGGAGGTCAGCAAGACTCAGCTAT
Found at i:66881829 original size:22 final size:21
Alignment explanation
Indices: 66881777--66881841 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
66881767 TTATTTCTTA
* *
66881777 AAATATTATTATTTAATTGAAT
1 AAAT-TTATTATTCAATTAAAT
* *
66881799 TAATATATTAATTCAATTAAAT
1 AAATTTATT-ATTCAATTAAAT
66881821 AAATTTATT-TCTCAATTAAAT
1 AAATTTATTAT-TCAATTAAAT
66881842 TATTTTCTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
20 1 0.03
21 14 0.40
22 20 0.57
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.48
Consensus pattern (21 bp):
AAATTTATTATTCAATTAAAT
Found at i:66881846 original size:16 final size:18
Alignment explanation
Indices: 66881820--66881852 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
66881810 TTCAATTAAA
66881820 TAAATTTA-TTTCTCAAT
1 TAAATTTATTTTCTCAAT
66881837 TAAA-TTATTTTCTCAA
1 TAAATTTATTTTCTCAA
66881853 CTCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (18 bp):
TAAATTTATTTTCTCAAT
Found at i:66886653 original size:13 final size:12
Alignment explanation
Indices: 66886635--66886670 Score: 56
Period size: 13 Copynumber: 3.0 Consensus size: 12
66886625 AAAAGAATGA
66886635 TTCTTTTTTTCTT
1 TTCTTTTTTT-TT
66886648 TTCTTTTTTTTT
1 TTCTTTTTTTTT
66886660 TT-TTTTTTTTT
1 TTCTTTTTTTTT
66886671 GCATTATCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 9 0.39
12 4 0.17
13 10 0.43
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:66888085 original size:275 final size:278
Alignment explanation
Indices: 66887565--66888103 Score: 693
Period size: 275 Copynumber: 1.9 Consensus size: 278
66887555 TATATGTTAT
* *
66887565 ATTATATAAATGTATTATTTATAAAATCATATATATGAAATATAAAGATATTTATTATATAAATA
1 ATTATATAAATGTATTATTTATAAAATCATACACATGAAATATAAAGATATTTATTATATAAATA
* * * * *
66887630 ATTCAATTTTGATTTTATAACTAAAGTAGAATTATTTTTGTACTTTTTTGGTTAATGAAAAAAAT
66 ATTAAATTTTAATTTTAAAACTAAAGTA-AATTATTTTTGTACTATTTTGATTAATGAAAAAAAT
* * * **
66887695 TACTTTAAAATGAAGTAATTTGATAAAAGATTTTAACTTTTTATTTATTATCATATAAATGCATT
130 TACTTTAAAATAAAATAATTTGATAAAAGATATTAACTTTTTATAAATTATCATATAAATGCATT
* ** *
66887760 AAACAAAAGTGTTTTAAAAGAATCAAAATTCTTTTTTATACCTGTGATAAA-TCTAGTAAATAAT
195 AAACAAAAGTGTTTTAAAAGAATCAAAATTCTTATTTATAAATATGATAAATTCTA-TAAATAAT
66887824 AAAAACCATTTATATAATAA
259 AAAAACCATTTATATAATAA
* *
66887844 ATTATATAAA-GTATTATTTATAAAATTATACACATGAAATATAAAGTTATTTATTATATAAATA
1 ATTATATAAATGTATTATTTATAAAATCATACACATGAAATATAAAGATATTTATTATATAAATA
*
66887908 ATTAAATTTTAATATTTAAAACTAAAGT-AA-TATTTTT-TCACTATTTT-ATTAATGAAACATA
66 ATTAAATTTTAAT-TTTAAAACTAAAGTAAATTATTTTTGT-ACTATTTTGATTAATGAAA-AAA
* * *
66887969 A-TACTTTAAAGATAAAAT-ATTTCTATACAA-ATATTAACCTTTTT-TAAATTATTATATAAAT
128 ATTACTTTAAA-ATAAAATAATTT-GATAAAAGATATTAA-CTTTTTATAAATTATCATATAAAT
* * * * *
66888030 TCATTTAACAGAAGTGTTTTAAAAGAATCAGAATTCTTATTTATAAATATGATAAATTTTATAAA
190 GCATTAAACAAAAGTGTTTTAAAAGAATCAAAATTCTTATTTATAAATATGATAAATTCTATAAA
66888095 TAATAAAAA
255 TAATAAAAA
66888104 ATATTTAAAA
Statistics
Matches: 226, Mismatches: 27, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
275 104 0.46
276 36 0.16
277 2 0.01
278 61 0.27
279 23 0.10
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (278 bp):
ATTATATAAATGTATTATTTATAAAATCATACACATGAAATATAAAGATATTTATTATATAAATA
ATTAAATTTTAATTTTAAAACTAAAGTAAATTATTTTTGTACTATTTTGATTAATGAAAAAAATT
ACTTTAAAATAAAATAATTTGATAAAAGATATTAACTTTTTATAAATTATCATATAAATGCATTA
AACAAAAGTGTTTTAAAAGAATCAAAATTCTTATTTATAAATATGATAAATTCTATAAATAATAA
AAACCATTTATATAATAA
Found at i:66893034 original size:14 final size:14
Alignment explanation
Indices: 66893015--66893041 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
66893005 AAAAAACCTC
66893015 TAATTTCTCTCTAT
1 TAATTTCTCTCTAT
66893029 TAATTTCTCTCTA
1 TAATTTCTCTCTA
66893042 ATTTCTCTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (14 bp):
TAATTTCTCTCTAT
Found at i:66893043 original size:11 final size:11
Alignment explanation
Indices: 66893012--66893051 Score: 53
Period size: 11 Copynumber: 3.4 Consensus size: 11
66893002 ATAAAAAAAC
66893012 CTCTAATTTCT
1 CTCTAATTTCT
66893023 CTCTATTAATTTCT
1 CTC---TAATTTCT
66893037 CTCTAATTTCT
1 CTCTAATTTCT
66893048 CTCT
1 CTCT
66893052 GAAAGCTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 15 0.58
14 11 0.42
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.55
Consensus pattern (11 bp):
CTCTAATTTCT
Found at i:66896772 original size:91 final size:91
Alignment explanation
Indices: 66896617--66896799 Score: 366
Period size: 91 Copynumber: 2.0 Consensus size: 91
66896607 CGTTGTTTAG
66896617 TGGTCTTCATCAACTAGCAATGGCACCTATCTAACCATATATTGAACGAGGATGGTAGCTTTGAT
1 TGGTCTTCATCAACTAGCAATGGCACCTATCTAACCATATATTGAACGAGGATGGTAGCTTTGAT
66896682 TTTCAAAATATTTTGACATAACAAAC
66 TTTCAAAATATTTTGACATAACAAAC
66896708 TGGTCTTCATCAACTAGCAATGGCACCTATCTAACCATATATTGAACGAGGATGGTAGCTTTGAT
1 TGGTCTTCATCAACTAGCAATGGCACCTATCTAACCATATATTGAACGAGGATGGTAGCTTTGAT
66896773 TTTCAAAATATTTTGACATAACAAAC
66 TTTCAAAATATTTTGACATAACAAAC
66896799 T
1 T
66896800 ATTAAGATGA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 92 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (91 bp):
TGGTCTTCATCAACTAGCAATGGCACCTATCTAACCATATATTGAACGAGGATGGTAGCTTTGAT
TTTCAAAATATTTTGACATAACAAAC
Found at i:66896813 original size:32 final size:32
Alignment explanation
Indices: 66896777--66896870 Score: 179
Period size: 32 Copynumber: 2.9 Consensus size: 32
66896767 TTTGATTTTC
*
66896777 AAAATATTTTGACATAACAAACTATTAAGATG
1 AAAATATTTTGATATAACAAACTATTAAGATG
66896809 AAAATATTTTGATATAACAAACTATTAAGATG
1 AAAATATTTTGATATAACAAACTATTAAGATG
66896841 AAAATATTTTGATATAACAAACTATTAAGA
1 AAAATATTTTGATATAACAAACTATTAAGA
66896871 ATTAAATTAG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (32 bp):
AAAATATTTTGATATAACAAACTATTAAGATG
Found at i:66898959 original size:14 final size:12
Alignment explanation
Indices: 66898930--66898972 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
66898920 AGCTTAAAGA
* *
66898930 TATATATATATA
1 TATATTTATATT
66898942 TATATTTATTTATT
1 TATATTTA--TATT
66898956 TATATTTATATT
1 TATATTTATATT
66898968 TATAT
1 TATAT
66898973 AGACACACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 16 0.59
14 11 0.41
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TATATTTATATT
Found at i:66902123 original size:45 final size:45
Alignment explanation
Indices: 66902012--66902139 Score: 134
Period size: 45 Copynumber: 2.8 Consensus size: 45
66902002 TATACGCCTA
* *
66902012 AAATGAATAAGACCATAGCTAAAAGATGTTATGGCATCATGACAG
1 AAATGACTAAGACCATAGCTAAAAGATGTTATGGCATCATGAAAG
* ** * * *
66902057 AAATGAGTAAGACTGTGGCTAAAAGATGTTATGGCGTTATGGTAAAG
1 AAATGACTAAGACCATAGCTAAAAGATGTTATGGCATCAT-G-AAAG
**
66902104 -AA-GACTAAGACCATAGCTAAAAGACATTATGGCATC
1 AAATGACTAAGACCATAGCTAAAAGATGTTATGGCATC
66902140 TTTTGATAGT
Statistics
Matches: 66, Mismatches: 15, Indels: 4
0.78 0.18 0.05
Matches are distributed among these distances:
45 60 0.91
46 3 0.05
47 3 0.05
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.23
Consensus pattern (45 bp):
AAATGACTAAGACCATAGCTAAAAGATGTTATGGCATCATGAAAG
Found at i:66904206 original size:40 final size:40
Alignment explanation
Indices: 66904127--66904284 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
66904117 TTCGAATGAT
* * * *
66904127 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
66904167 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
66904207 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
66904247 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
66904285 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:66904305 original size:80 final size:80
Alignment explanation
Indices: 66904127--66904314 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
66904117 TTCGAATGAT
* *
66904127 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
66904192 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
66904207 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
66904268 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
66904288 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
66904315 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:66907731 original size:68 final size:67
Alignment explanation
Indices: 66907610--66907810 Score: 165
Period size: 68 Copynumber: 3.0 Consensus size: 67
66907600 AAAGAGGTTT
* * *
66907610 AAGGTGTAAGACCATAGCTCA-ACTATGACCACCAATAGAGTCCACCAAAATGTTAAACATGGGG
1 AAGGTGTAAGACCATAG-TTAGA-TATGACAACCAATAGAGTCCACCAAAATGTTAAACATGAGG
66907674 TTAC
64 TTAC
* * **** ** *
66907678 AAGGTGTAAGACCATAGATTGGATATGACAACCAATAGAGTTCACTTGGATGTTAAGTATGAGTT
1 AAGGTGTAAGACCATAG-TTAGATATGACAACCAATAGAGTCCACCAAAATGTTAAACATGAGGT
*
66907743 TCC
65 TAC
* * * ** *
66907746 AAGGTGT-AGAACCATAGCTCAGCTATGACAACCAATAGAGTCCGCCAGGACGTTAAACATG-GG
1 AAGGTGTAAG-ACCATAG-TTAGATATGACAACCAATAGAGTCCACCAAAATGTTAAACATGAGG
66907809 TT
64 TT
66907811 CTACTGTGTA
Statistics
Matches: 105, Mismatches: 26, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
67 5 0.05
68 99 0.94
69 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.23
Consensus pattern (67 bp):
AAGGTGTAAGACCATAGTTAGATATGACAACCAATAGAGTCCACCAAAATGTTAAACATGAGGTT
AC
Found at i:66908493 original size:146 final size:146
Alignment explanation
Indices: 66908226--66908518 Score: 541
Period size: 146 Copynumber: 2.0 Consensus size: 146
66908216 AAATGGTTGG
*
66908226 ACTGGTAAAGTCTATCGGACATCTATAGTAAGGAAGGATATTTGACCAAGACTAGGTAATAGCAT
1 ACTGGTAAAGTCTATCGGACATCTATAGTAAGGAAGGATATTTAACCAAGACTAGGTAATAGCAT
*
66908291 GATGGACCACAGGGGTTAATAGGATAGGGCATCCAATCAGTTAGCTTATCATCATGTTAGGAAAA
66 GATGGACCACAGGGGTTAATAGGATAGGGCATCCAATCAGTTAGCTTATCACCATGTTAGGAAAA
66908356 TGAGTTTGGACTGGAA
131 TGAGTTTGGACTGGAA
* * *
66908372 ACTGGTAAAGTCTATCGGACATCTATAGTAAGGAAGGATATTTAACTAGGACTAGGTAATCGCAT
1 ACTGGTAAAGTCTATCGGACATCTATAGTAAGGAAGGATATTTAACCAAGACTAGGTAATAGCAT
66908437 GATGGACCACAGGGGTTAATAGGATAGGGCATCCAATCAGTTAGCTTATCACCATGTTAGGAAAA
66 GATGGACCACAGGGGTTAATAGGATAGGGCATCCAATCAGTTAGCTTATCACCATGTTAGGAAAA
66908502 TGAGTTTGGACTGGAA
131 TGAGTTTGGACTGGAA
66908518 A
1 A
66908519 GAGTGTTAGA
Statistics
Matches: 142, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
146 142 1.00
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (146 bp):
ACTGGTAAAGTCTATCGGACATCTATAGTAAGGAAGGATATTTAACCAAGACTAGGTAATAGCAT
GATGGACCACAGGGGTTAATAGGATAGGGCATCCAATCAGTTAGCTTATCACCATGTTAGGAAAA
TGAGTTTGGACTGGAA
Found at i:66917267 original size:43 final size:42
Alignment explanation
Indices: 66917201--66917318 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 42
66917191 AACATATACA
* *
66917201 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACATGTAACCAAACA-CG
* * * * *
66917244 ATGCCACTGTCCTAGACAGGGTCTTACATGAAACCAGATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGTAACCAAACACG
*
66917286 ATGCCAATGTCCCAGACATGGTCTTACATGTAA
1 ATGCCAATGTCCCAGACAGGGTCTTACATGTAA
66917319 AATAAAAGAT
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 31 0.49
43 31 0.49
44 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATGTAACCAAACACG
Found at i:66917297 original size:42 final size:42
Alignment explanation
Indices: 66917196--66917340 Score: 134
Period size: 43 Copynumber: 3.5 Consensus size: 42
66917186 TAAAGAACAT
* * * *
66917196 ATACAATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACAG-GGTCTTACATGAAACCAA
* * * *
66917238 ACATCGATGCCACTGTCCTAGACAGGGTCTTACATGAAACCAG
1 ATA-CGATGCCAATGTCCCAGACAGGGTCTTACATGAAACCAA
* **
66917281 ATACGATGCCAATGTCCCAGACATGGTCTTACATGTAAAATAA
1 ATACGATGCCAATGTCCCAGACAGGGTCTTACATG-AAACCAA
*
66917324 A-A-GATGCCAACGTCCCA
1 ATACGATGCCAATGTCCCA
66917341 AACGTGATCT
Statistics
Matches: 84, Mismatches: 16, Indels: 7
0.79 0.15 0.07
Matches are distributed among these distances:
41 14 0.17
42 32 0.38
43 37 0.44
44 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACAGGGTCTTACATGAAACCAA
Found at i:66920977 original size:35 final size:35
Alignment explanation
Indices: 66920915--66921031 Score: 135
Period size: 35 Copynumber: 3.3 Consensus size: 35
66920905 TACTCTATGT
* * * *
66920915 TTGGTGTGTTTCAGTTGGACTAGCTCTTATGAGTA
1 TTGGTGTGTTTTAGTGGGATTAGCTCTTATGAGCA
* *
66920950 TTGGTGTGTTTTGGTGGGATTAACTCTTATGAGCA
1 TTGGTGTGTTTTAGTGGGATTAGCTCTTATGAGCA
* * * *
66920985 TTGGTGTGTTTTTGAGAGATTAGCTCTTTACGAGCA
1 TTGGTGTGTTTTAGTGGGATTAGCTC-TTATGAGCA
66921021 TTGGTGTGTTT
1 TTGGTGTGTTT
66921032 GGACAGATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
35 51 0.73
36 19 0.27
ACGTcount: A:0.16, C:0.09, G:0.30, T:0.44
Consensus pattern (35 bp):
TTGGTGTGTTTTAGTGGGATTAGCTCTTATGAGCA
Found at i:66921040 original size:35 final size:35
Alignment explanation
Indices: 66920935--66921066 Score: 153
Period size: 35 Copynumber: 3.8 Consensus size: 35
66920925 TCAGTTGGAC
* * *
66920935 TAGCTCTTATGAGTATTGGTGTGTTTTGGTGGGAT
1 TAGCTCTTATGAGCATTGGTGTGTTTTGGAGAGAT
* *
66920970 TAACTCTTATGAGCATTGGTGTGTTTTTGAGAGAT
1 TAGCTCTTATGAGCATTGGTGTGTTTTGGAGAGAT
* *
66921005 TAGCTCTTTACGAGCATTGGTGTG-TTTGGACAGAT
1 TAGCTC-TTATGAGCATTGGTGTGTTTTGGAGAGAT
* *
66921040 TGGTTCTTATGAGCA-T-GTGTGTTTTGG
1 TAGCTCTTATGAGCATTGGTGTGTTTTGG
66921067 TTGGATTGTC
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
32 5 0.06
33 6 0.07
34 8 0.10
35 48 0.58
36 16 0.19
ACGTcount: A:0.17, C:0.09, G:0.30, T:0.43
Consensus pattern (35 bp):
TAGCTCTTATGAGCATTGGTGTGTTTTGGAGAGAT
Found at i:66922742 original size:85 final size:85
Alignment explanation
Indices: 66922599--66922775 Score: 273
Period size: 85 Copynumber: 2.1 Consensus size: 85
66922589 CACGGCCTGT
* *
66922599 CACACGGGCATGTGGGGCTATTTCAAATGTTACACGGCTTGAGACACGGGCGTGTGTCTCAGTCG
1 CACACGGGCATGTGGGGCTATTTCAAATGTTACACAGCTTGAGACACGGGCATGTGTCTCAGTCG
* **
66922664 TGTGAGGCACACGATTTGGC
66 TATGAGGCACACGACCTGGC
* * *
66922684 CACACGGGCATGTGGGGCTATTTCGAATGTTACATAGCTTGAGACATGGGCATGTGTCTCAGTCG
1 CACACGGGCATGTGGGGCTATTTCAAATGTTACACAGCTTGAGACACGGGCATGTGTCTCAGTCG
*
66922749 TATGAGGCACACGGCCTGGC
66 TATGAGGCACACGACCTGGC
66922769 CACACGG
1 CACACGG
66922776 TCGTGTGACC
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 83 1.00
ACGTcount: A:0.21, C:0.23, G:0.32, T:0.24
Consensus pattern (85 bp):
CACACGGGCATGTGGGGCTATTTCAAATGTTACACAGCTTGAGACACGGGCATGTGTCTCAGTCG
TATGAGGCACACGACCTGGC
Found at i:66930377 original size:17 final size:18
Alignment explanation
Indices: 66930351--66930387 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
66930341 ACACAAGGTC
66930351 CACCACCTTCT-GAATAT
1 CACCACCTTCTGGAATAT
*
66930368 CACCAGCTTCTGGAATAT
1 CACCACCTTCTGGAATAT
66930386 CA
1 CA
66930388 GATGTTGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.30, C:0.32, G:0.11, T:0.27
Consensus pattern (18 bp):
CACCACCTTCTGGAATAT
Found at i:66934399 original size:21 final size:21
Alignment explanation
Indices: 66934375--66934449 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
66934365 CCTTTAACTT
* *
66934375 TAGACCTTGGACTCTAGACCC
1 TAGACCTTGGACACTAAACCC
* *
66934396 TAGA-CTATGGACAGTAAACCT
1 TAGACCT-TGGACACTAAACCC
66934417 TAGACCTTGGAC-CTTAAACCC
1 TAGACCTTGGACAC-TAAACCC
* *
66934438 TCGATCTTGGAC
1 TAGACCTTGGAC
66934450 CTTTAGGTCT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
20 2 0.05
21 39 0.91
22 2 0.05
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (21 bp):
TAGACCTTGGACACTAAACCC
Found at i:66934505 original size:21 final size:21
Alignment explanation
Indices: 66934481--66934520 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
66934471 TTTAGGATTC
66934481 AGGGTTT-GGGATCCAAGGTCT
1 AGGGTTTAGGG-TCCAAGGTCT
66934502 AGGGTTTAGGGTCCAAGGT
1 AGGGTTTAGGGTCCAAGGT
66934521 TCAAGTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.20, C:0.12, G:0.40, T:0.28
Consensus pattern (21 bp):
AGGGTTTAGGGTCCAAGGTCT
Found at i:66942304 original size:26 final size:26
Alignment explanation
Indices: 66942268--66942336 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
66942258 TTTTCAATAA
*
66942268 TGCTCACACGAGCTGTGAAATGGGTC
1 TGCTCACACGAGCTGTGAAATGGGCC
* *
66942294 TGCTCACACGAGCTATGAAATGTGCC
1 TGCTCACACGAGCTGTGAAATGGGCC
*
66942320 TGCTCACACGAGGTGTG
1 TGCTCACACGAGCTGTG
66942337 GGTTAGAATG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (26 bp):
TGCTCACACGAGCTGTGAAATGGGCC
Found at i:66951570 original size:29 final size:29
Alignment explanation
Indices: 66951530--66951632 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
66951520 GTTGAGAGAT
*
66951530 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
66951559 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
66951588 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
66951617 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
66951633 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:66953320 original size:40 final size:40
Alignment explanation
Indices: 66953259--66953441 Score: 162
Period size: 40 Copynumber: 4.6 Consensus size: 40
66953249 GTGTTACAAA
* *
66953259 ATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAG
1 ATGCCTTTGGGACTTAGCCCGGATT-TAGTAACTCGCACAG
* *
66953299 ATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCACAA
1 ATGCCTTTGGGACTTAGCCCGGATTTAGTAACTCGCACAG
* *
66953339 ATGCC-TTCGGATCTTAGTCCGGATTTAGTAACTCGCAC-G
1 ATGCCTTTGGGA-CTTAGCCCGGATTTAGTAACTCGCACAG
* * * *
66953378 AATGCC-TTCGGATCTTAGTCCGGATATT-GTCACTTAGCACA-
1 -ATGCCTTTGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCACAG
* *
66953419 AAGCCTTCGGGACTTAGCCCGGA
1 ATGCCTTTGGGACTTAGCCCGGA
66953442 CATCATTCGA
Statistics
Matches: 122, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 5 0.04
40 104 0.85
41 13 0.11
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
ATGCCTTTGGGACTTAGCCCGGATTTAGTAACTCGCACAG
Found at i:66953401 original size:80 final size:82
Alignment explanation
Indices: 66953257--66953441 Score: 215
Period size: 80 Copynumber: 2.3 Consensus size: 82
66953247 GGGTGTTACA
* *
66953257 AAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAGATGCCTTTGGGACTTAACCCGG
1 AAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAGATGCCTTTCGGACTTAACCCGG
*
66953321 AT-TTAGTAAC-TCGCAC
66 ATATT-GTAACTTAGCAC
* **
66953337 AAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCAC-GAATGCC-TTCGGATCTTAGTC
1 AAATGCCTTCGGGA-CTTAGCCCGGATTATAGTAACTCGCACAG-ATGCCTTTCGGA-CTTAACC
*
66953398 CGGATATTGTCACTTAGCAC
63 CGGATATTGTAACTTAGCAC
66953418 AAA-GCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGA
66953442 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 14
0.80 0.07 0.12
Matches are distributed among these distances:
79 9 0.10
80 66 0.73
81 15 0.17
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (82 bp):
AAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAGATGCCTTTCGGACTTAACCCGG
ATATTGTAACTTAGCAC
Found at i:66956802 original size:29 final size:29
Alignment explanation
Indices: 66956769--66956825 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
66956759 CAACATCCTT
*
66956769 AGTGATTTGAAGTCCACCCAACCCACCAC
1 AGTGATTTCAAGTCCACCCAACCCACCAC
* *
66956798 AGTGATTTCAAGTCCACTCGACCCACCA
1 AGTGATTTCAAGTCCACCCAACCCACCA
66956826 TGGTGCTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.30, C:0.37, G:0.14, T:0.19
Consensus pattern (29 bp):
AGTGATTTCAAGTCCACCCAACCCACCAC
Found at i:66957077 original size:23 final size:23
Alignment explanation
Indices: 66957047--66957118 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 23
66957037 AATCCAAACT
66957047 ACCGTGCTATAAAAGTAGACATA
1 ACCGTGCTATAAAAGTAGACATA
* *
66957070 ACCGTGCTATAGAAGCAGACATA
1 ACCGTGCTATAAAAGTAGACATA
** * *
66957093 ATTGTGCCATAAAAGTAGACAAA
1 ACCGTGCTATAAAAGTAGACATA
66957116 ACC
1 ACC
66957119 ATTGGAAGAA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.19
Consensus pattern (23 bp):
ACCGTGCTATAAAAGTAGACATA
Found at i:66965799 original size:50 final size:49
Alignment explanation
Indices: 66965722--66965869 Score: 165
Period size: 51 Copynumber: 3.0 Consensus size: 49
66965712 ATCTGGTACG
66965722 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCATCTAATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTCA-CATCTAATACA
* * *** *
66965772 CGTAGTAGCCTGCACTTAGTACTACACACGTGA--TCACAGTTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTCACA----TCTAATACA
* *
66965823 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTCACATGTAATA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTCACATCTAATA
66965870 TCATGATTTG
Statistics
Matches: 79, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
47 2 0.03
48 3 0.04
49 3 0.04
50 31 0.39
51 35 0.44
53 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTCACATCTAATACA
Found at i:66965850 original size:51 final size:50
Alignment explanation
Indices: 66965716--66965850 Score: 162
Period size: 50 Copynumber: 2.7 Consensus size: 50
66965706 GAAGCTATCT
* * *
66965716 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCATCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCACACCATCG
** * * * ***
66965766 AATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCACA-CCATCG
66965817 GGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACA
66965851 TGCGACCTCA
Statistics
Matches: 69, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
50 37 0.54
51 32 0.46
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (50 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCACACCATCG
Done.