Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 227 of 378
Found at i:67198550 original size:20 final size:20
Alignment explanation
Indices: 67198511--67198556 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
67198501 TGTTATTACT
*
67198511 GATGAACTATTGTTTATATG
1 GATGAACTATTGGTTATATG
67198531 GATGAACTATTGGTTATATG
1 GATGAACTATTGGTTATATG
*
67198551 AATGAA
1 GATGAA
67198557 TTACAGTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.39
Consensus pattern (20 bp):
GATGAACTATTGGTTATATG
Found at i:67200494 original size:15 final size:15
Alignment explanation
Indices: 67200444--67200498 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
67200434 CAAGAAAATC
67200444 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
**
67200459 -AGATAGCGAAA-CCA
1 GA-ATAAAGAAATCCA
*
67200473 AAATAAAGAAATCCA
1 GAATAAAGAAATCCA
67200488 GAATAAAGAAA
1 GAATAAAGAAA
67200499 CCCAAGATAC
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
14 11 0.34
15 21 0.66
ACGTcount: A:0.62, C:0.13, G:0.15, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:67200498 original size:29 final size:29
Alignment explanation
Indices: 67200445--67200500 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
67200435 AAGAAAATCG
**
67200445 AATAAAGAAATCCAAGATAGCGAAACCAA
1 AATAAAGAAATCCAAGATAAAGAAACCAA
67200474 AATAAAGAAATCC-AGAATAAAGAAACC
1 AATAAAGAAATCCAAG-ATAAAGAAACC
67200501 CAAGATACGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.61, C:0.16, G:0.12, T:0.11
Consensus pattern (29 bp):
AATAAAGAAATCCAAGATAAAGAAACCAA
Found at i:67200661 original size:2 final size:2
Alignment explanation
Indices: 67200648--67200677 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
67200638 GTATCTTCCC
*
67200648 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67200678 CAAATGGAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:67203596 original size:27 final size:27
Alignment explanation
Indices: 67203531--67203709 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
67203521 TTTGGTTTAC
67203531 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * *
67203557 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
67203584 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
67203611 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
67203638 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
67203665 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
67203692 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
67203710 TCGACCTGTA
Statistics
Matches: 138, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
26 14 0.10
27 123 0.89
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:67203720 original size:81 final size:81
Alignment explanation
Indices: 67203531--67203754 Score: 233
Period size: 81 Copynumber: 2.8 Consensus size: 81
67203521 TTTGGTTTAC
* * * * *
67203531 AAAATTACCAAAATA-CCC-TGCTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACC
1 AAAATTACCAAAATACCCCGAGC-CTGTAAAATTATC-AAAATACCCCTAGTTTGTAAAATTACC
*
67203593 AAAATACCCCTAGTTTGT
64 AAAATACCCCTAATTTGT
* **
67203611 AAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
67203676 AATACCCCTAATTTGT
66 AATACCCCTAATTTGT
* ** ** * *
67203692 GAAATTACTGAAATACCCTCGA-CCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACC
1 AAAATTACCAAAATACCC-CGAGCCTGTAAAATTATCAAAATACCCCTAG-TTTGTAAAATTACC
67203755 GTTTTACCCT
Statistics
Matches: 123, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 20 0.16
81 99 0.80
82 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:67203723 original size:27 final size:27
Alignment explanation
Indices: 67203693--67203753 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
67203683 CTAATTTGTG
67203693 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
67203720 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
67203747 AAATTAC
1 AAATTAC
67203754 CGTTTTACCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:67204051 original size:27 final size:27
Alignment explanation
Indices: 67203732--67204050 Score: 365
Period size: 27 Copynumber: 11.8 Consensus size: 27
67203722 ATTATTGAAA
* * *
67203732 TACCCTCGACTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
67203759 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
67203786 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
67203813 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
67203840 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * *
67203867 TACCC-CAGATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
67203894 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
67203921 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
67203948 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
67203975 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
67204002 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
67204029 TACCCTCGATTTAAAAAATTAC
1 TACCCTCGATTTATAGAATTAC
67204051 TAAAATACCC
Statistics
Matches: 260, Mismatches: 28, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.01
27 256 0.98
28 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:67205319 original size:25 final size:25
Alignment explanation
Indices: 67205290--67205337 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67205280 TTATAATATG
* * *
67205290 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
67205315 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
67205338 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:67205406 original size:20 final size:20
Alignment explanation
Indices: 67205381--67205439 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
67205371 TAAATATGGT
67205381 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
67205401 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
67205421 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
67205440 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:67205517 original size:24 final size:24
Alignment explanation
Indices: 67205490--67205632 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
67205480 GAGGAAGTGA
67205490 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
67205514 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
67205538 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
67205561 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
67205585 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
67205609 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
67205633 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:67205583 original size:47 final size:47
Alignment explanation
Indices: 67205490--67205632 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
67205480 GAGGAAGTGA
67205490 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
67205538 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
67205585 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
67205633 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:67205606 original size:71 final size:72
Alignment explanation
Indices: 67205490--67205633 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
67205480 GAGGAAGTGA
*
67205490 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
67205553 CCAGTTAT
65 CCAGTTAT
** * *
67205561 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
67205626 CAGTTAT
66 CAGTTAT
67205633 A
1 A
67205634 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:67208158 original size:47 final size:47
Alignment explanation
Indices: 67208040--67208172 Score: 171
Period size: 46 Copynumber: 2.9 Consensus size: 47
67208030 ATAATCTCAC
* * *
67208040 CCATAATGAACTCGGAATGCAACTCAACGAGCTCGGGTG-TTCGCAT
1 CCATAATGAACTCGGAATGCAACTCAATGAGTTCGGATGCTTCGCAT
**
67208086 CCATAATGAACTCGGAACACAACTCAATGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAATGCAACTCAATGAGTTCGGATGCTTCGCAT
* * *
67208132 CCATAGGTGAACTCGAAATGCAACTCAATGAGTTCAGATGC
1 CCATA-ATGAACTCGGAATGCAACTCAATGAGTTCGGATGC
67208173 CTCATAATTC
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
46 43 0.57
47 32 0.43
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.23
Consensus pattern (47 bp):
CCATAATGAACTCGGAATGCAACTCAATGAGTTCGGATGCTTCGCAT
Found at i:67210799 original size:22 final size:22
Alignment explanation
Indices: 67210774--67210832 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
67210764 TAGCTCGTCT
** *
67210774 GAGCTTACTGTTCAGCTTGATA
1 GAGCTTACTGTTCAGCTCAAAA
* *
67210796 GAGCTTACTATTTTAGCTCAAAA
1 GAGCTTACT-GTTCAGCTCAAAA
67210819 GAGCTTACTGTTCA
1 GAGCTTACTGTTCA
67210833 TTAGCTCAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
22 12 0.41
23 17 0.59
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAAAA
Found at i:67210821 original size:23 final size:25
Alignment explanation
Indices: 67210795--67210852 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
67210785 TCAGCTTGAT
67210795 AGAGCTTACTATT-TTAGCTCAA-A
1 AGAGCTTACTATTATTAGCTCAAGA
*
67210818 AGAGCTTACTGTTCATTAGCTCAAGA
1 AGAGCTTACTATT-ATTAGCTCAAGA
*
67210844 GGAGCTTAC
1 AGAGCTTAC
67210853 CGATCATGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 12 0.40
25 9 0.30
26 9 0.30
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (25 bp):
AGAGCTTACTATTATTAGCTCAAGA
Found at i:67210859 original size:26 final size:25
Alignment explanation
Indices: 67210808--67210872 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
67210798 GCTTACTATT
* *
67210808 TTAGCTCAAAAGAGCTTACTGTTCA
1 TTAGCTCAAAAGAGCTTACCGATCA
*
67210833 TTAGCTCAAGAGGAGCTTACCGATCA
1 TTAGCTCAA-AAGAGCTTACCGATCA
* *
67210859 -TGGCTCGAAAGAGC
1 TTAGCTCAAAAGAGC
67210873 ATAAATGATA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
24 5 0.15
25 15 0.45
26 13 0.39
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25
Consensus pattern (25 bp):
TTAGCTCAAAAGAGCTTACCGATCA
Found at i:67211084 original size:20 final size:20
Alignment explanation
Indices: 67211059--67211110 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
67211049 ATGAACTGTT
*
67211059 GTTTATACGGATGAACTACTA
1 GTTTATACGAATGAACTAC-A
* *
67211080 G-TTATATGAATGAATTACA
1 GTTTATACGAATGAACTACA
67211099 GTTTATACGAAT
1 GTTTATACGAAT
67211111 AGAAATTGCC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 2 0.08
20 23 0.88
21 1 0.04
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (20 bp):
GTTTATACGAATGAACTACA
Found at i:67214747 original size:30 final size:32
Alignment explanation
Indices: 67214677--67214747 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 32
67214667 AGACTAATTT
* *
67214677 TTATTCTTCACATTTAATCTTATATTTTTCTAC
1 TTATT-TTCACATTTAAGCTTAAATTTTTCTAC
* *
67214710 -TAATTTCAC-TTTAAGC-TAAATTTTTCTCC
1 TTATTTTCACATTTAAGCTTAAATTTTTCTAC
67214739 TTATTTTCA
1 TTATTTTCA
67214748 ATTAAACCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
29 11 0.34
30 13 0.41
31 5 0.16
32 3 0.09
ACGTcount: A:0.25, C:0.18, G:0.01, T:0.55
Consensus pattern (32 bp):
TTATTTTCACATTTAAGCTTAAATTTTTCTAC
Found at i:67221491 original size:27 final size:27
Alignment explanation
Indices: 67221434--67221562 Score: 118
Period size: 27 Copynumber: 4.8 Consensus size: 27
67221424 CCCCCAGATA
* * *
67221434 TAAAATTACC-AAAGTACCCCCGGTTTA
1 TAAAATTACCGAAA-TACCCTCGATTTG
* * *
67221461 TAAAATTACCCAAATATCCTTGATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
*
67221488 TAAAATTACCGAAATACCCTCAATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
* * * *
67221515 CAAGATTACTGAAATACCCTCGACTTG
1 TAAAATTACCGAAATACCCTCGATTTG
*
67221542 TAAAATTATC-AAAGTACCCTC
1 TAAAATTACCGAAA-TACCCTC
67221563 AAATTACAAA
Statistics
Matches: 82, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
26 3 0.04
27 76 0.93
28 3 0.04
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.29
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATTTG
Found at i:67221577 original size:54 final size:54
Alignment explanation
Indices: 67221434--67221579 Score: 159
Period size: 54 Copynumber: 2.7 Consensus size: 54
67221424 CCCCCAGATA
* ** * ** * * *
67221434 TAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCCAAATATCCTTGATTTG
1 TAAAATTACCAAAGTACCCTCAATTTACAAAATTACTGAAATACCCTCGACTTG
* *
67221488 TAAAATTACCGAAA-TACCCTCAATTTGCAAGATTACTGAAATACCCTCGACTTG
1 TAAAATTACC-AAAGTACCCTCAATTTACAAAATTACTGAAATACCCTCGACTTG
* *
67221542 TAAAATTATCAAAGTACCCTCAAATTACAAAATTACTG
1 TAAAATTACCAAAGTACCCTCAATTTACAAAATTACTG
67221580 TTTTACCCTC
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
53 3 0.04
54 69 0.92
55 3 0.04
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (54 bp):
TAAAATTACCAAAGTACCCTCAATTTACAAAATTACTGAAATACCCTCGACTTG
Found at i:67222020 original size:27 final size:27
Alignment explanation
Indices: 67221556--67222008 Score: 568
Period size: 27 Copynumber: 16.7 Consensus size: 27
67221546 ATTATCAAAG
* *
67221556 TACCCTCAAATTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
67221583 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
67221610 TACCCTCAATTGACAGAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* * *
67221637 TACCCTCGATTGATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
67221664 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
67221691 TACCCTCAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
67221718 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
67221745 TACCCTTGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
67221772 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
67221799 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
67221826 TACCCTCGATTTACAAAAATTACTGTTT
1 TACCCTCGATTTAC-AAAATTACTGTTT
* *
67221854 TACCCTTGATTTACAGAATT-CTCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* * * *
67221881 TACCCTTGATTGACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
67221908 TACCTTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
67221935 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * **
67221962 TACCCTCGGTTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
67221989 TACCCTCAATTTATAAAATT
1 TACCCTCGATTTACAAAATT
67222009 TCCATTTTAC
Statistics
Matches: 375, Mismatches: 46, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
26 3 0.01
27 344 0.92
28 28 0.07
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:67225215 original size:31 final size:31
Alignment explanation
Indices: 67225180--67225258 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
67225170 TTGCATTCAC
* *
67225180 ATTCTGATTTTGATTCTGTTACTTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
*
67225211 ATTCTGATTTTGATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
*
67225242 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
67225259 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTG
Found at i:67225219 original size:6 final size:6
Alignment explanation
Indices: 67225180--67225267 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
67225170 TTGCATTCAC
* * *
67225180 ATTCTG ATTTTG ATTCTG -TTACTTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
*
67225229 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
67225268 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.16, G:0.16, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:67227000 original size:43 final size:43
Alignment explanation
Indices: 67226924--67227061 Score: 181
Period size: 43 Copynumber: 3.2 Consensus size: 43
67226914 AGATTACGTC
*
67226924 TAAGACCATATCTGGGATA-TGGCATCGATATGAGACTTCATG
1 TAAGACCATAACTGGGATATTGGCATCGATATGAGACTTCATG
* * * *
67226966 TACGACCATAACTGGGCTATTGGCATAGATATGAGACTTTATG
1 TAAGACCATAACTGGGATATTGGCATCGATATGAGACTTCATG
* * *
67227009 TAAGACCATAGCTGGGATATTGGCATCGATACGA-AATTACATG
1 TAAGACCATAACTGGGATATTGGCATCGATATGAGACTT-CATG
67227052 TAAGACCATA
1 TAAGACCATA
67227062 TAAGGGATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
42 19 0.23
43 63 0.77
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (43 bp):
TAAGACCATAACTGGGATATTGGCATCGATATGAGACTTCATG
Found at i:67228151 original size:16 final size:17
Alignment explanation
Indices: 67228121--67228153 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
67228111 ATGCATGGTG
67228121 AATGTGAATTGTTTGCA
1 AATGTGAATTGTTTGCA
*
67228138 AATGT-AATTTTTTGCA
1 AATGTGAATTGTTTGCA
67228154 TGAATATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.30, C:0.06, G:0.18, T:0.45
Consensus pattern (17 bp):
AATGTGAATTGTTTGCA
Found at i:67230217 original size:2 final size:2
Alignment explanation
Indices: 67230210--67230242 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
67230200 GGTTTGTTTT
67230210 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67230243 TATCTCTGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67236210 original size:50 final size:50
Alignment explanation
Indices: 67236012--67236282 Score: 191
Period size: 49 Copynumber: 5.7 Consensus size: 50
67236002 TGTGTGAGCT
* * ** *
67236012 AGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-CAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTCGAAGATGAAAGCC
* * * * * **
67236058 AGTGTAAGACCATCTCTAGGACATGGCATCAGCA-TTG-AGACG--AGTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTCGAAGATGAAAGCC
* * * *
67236104 AGTGTAAGA-CATGTCTGGGATAT-GCATAGG--CTACG-AGATG--TGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACT-CGAAGATGAAAGCC
* * * *
67236148 AATGTAAGACCATGTCTGGGACATGGCATCGGCACGGT-TATG-TGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--TCGAAGATGAAAGCC
*
67236198 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAAGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTCGAAGATGAAAGCC
*
67236247 AGTGTAAGACCATGTCTGGGACATGACATCGGCACT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACT
67236283 TTATCCATGA
Statistics
Matches: 173, Mismatches: 34, Indels: 32
0.72 0.14 0.13
Matches are distributed among these distances:
43 1 0.01
44 20 0.12
45 24 0.14
46 26 0.15
47 13 0.08
48 13 0.08
49 40 0.23
50 36 0.21
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTCGAAGATGAAAGCC
Found at i:67244588 original size:6 final size:6
Alignment explanation
Indices: 67244577--67244655 Score: 54
Period size: 6 Copynumber: 12.8 Consensus size: 6
67244567 TATCATAACT
* * *
67244577 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
67244626 AGTATC AGGTAA-C AAAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
67244656 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
5 3 0.05
6 47 0.82
7 5 0.09
8 2 0.04
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:67244613 original size:31 final size:31
Alignment explanation
Indices: 67244572--67244655 Score: 105
Period size: 31 Copynumber: 2.7 Consensus size: 31
67244562 AACATTATCA
*
67244572 TAACTAGAATCAGAATCAGAATCAGAATTAGG
1 TAAC-AGAATCAGAATCAGAATCAGAATCAGG
* * *
67244604 TGACAGAATCAGAATCAGAATTAGTATCAGG
1 TAACAGAATCAGAATCAGAATCAGAATCAGG
* *
67244635 TAACAAAATCAAAATCAGAAT
1 TAACAGAATCAGAATCAGAAT
67244656 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
31 42 0.93
32 3 0.07
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (31 bp):
TAACAGAATCAGAATCAGAATCAGAATCAGG
Found at i:67245115 original size:27 final size:27
Alignment explanation
Indices: 67245081--67245301 Score: 345
Period size: 27 Copynumber: 8.2 Consensus size: 27
67245071 ATAAGGCATC
67245081 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
67245108 TCAGTAATTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
67245135 TCGGTATTTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
67245162 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
67245189 TCGGTAATTCTACCCTACA-GGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
67245215 GCGATAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
67245242 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
67245269 GCGATAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
67245296 TCGGTA
1 TCGGTA
67245302 TTATACAAAT
Statistics
Matches: 176, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 23 0.13
27 153 0.87
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
TCGGTAATTCTACCCTACAGGGGTATT
Found at i:67245223 original size:107 final size:108
Alignment explanation
Indices: 67245081--67245301 Score: 347
Period size: 107 Copynumber: 2.1 Consensus size: 108
67245071 ATAAGGCATC
* *
67245081 TCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCT
1 TCGGTAATTCTACCCTACAGGGGTATTGCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCT
* *
67245146 ACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATT
66 ACCCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATT
* *
67245189 TCGGTAATTCTACCCTACA-GGGTATTGC-GATAATTCTACCCTATAGGGGTATTTCGGTAATTC
1 TCGGTAATTCTACCCTACAGGGGTATTGCAG-TAATTCTACCCTACAAGGGTATTTCGGTAATTC
* *
67245252 TACCCTACAGGGGTATTGCGATAATTCTACCCTATAGGGGTATT
65 TACCCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATT
67245296 TCGGTA
1 TCGGTA
67245302 TTATACAAAT
Statistics
Matches: 104, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
106 1 0.01
107 84 0.81
108 19 0.18
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (108 bp):
TCGGTAATTCTACCCTACAGGGGTATTGCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCT
ACCCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATT
Found at i:67245260 original size:80 final size:80
Alignment explanation
Indices: 67245081--67245295 Score: 331
Period size: 80 Copynumber: 2.7 Consensus size: 80
67245071 ATAAGGCATC
* * * *
67245081 TCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCT
1 TCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAC-AGGGTATTGCGATAATTCT
67245146 ACCCTACAAGGGTATT
65 ACCCTACAAGGGTATT
67245162 TCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATTGCGATAATTCTA
1 TCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATTGCGATAATTCTA
* *
67245227 CCCTATAGGGGTATT
66 CCCTACAAGGGTATT
* * *
67245242 TCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACA-GGGTATT
67245296 TCGGTATTAT
Statistics
Matches: 124, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
80 73 0.59
81 51 0.41
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (80 bp):
TCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATTGCGATAATTCTA
CCCTACAAGGGTATT
Found at i:67245344 original size:107 final size:107
Alignment explanation
Indices: 67245128--67245357 Score: 270
Period size: 107 Copynumber: 2.1 Consensus size: 107
67245118 TACCCTACAA
* * *
67245128 GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCGG
* ** * **
67245193 TAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTATAG
66 TAATTATACAATACAGAGTATTGCGATAATTCTACCAAATAG
* *
67245235 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTATAGGGGTATTTCGG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCGG
**
67245300 T-ATTATACAA-ATCGAGAGTATTTTGATAATT-T-CACAAATCAG
66 TAATTATACAATA-C-AGAGTATTGCGATAATTCTAC-CAAAT-AG
*
67245342 GGGTATTTTGGTAATT
1 GGGTATTTCGGTAATT
67245358 TTACAAGTCA
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
105 2 0.02
106 11 0.10
107 92 0.88
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (107 bp):
GGGTATTTCGGTAATTCTACCCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCGG
TAATTATACAATACAGAGTATTGCGATAATTCTACCAAATAG
Found at i:67245424 original size:81 final size:81
Alignment explanation
Indices: 67245317--67245494 Score: 216
Period size: 81 Copynumber: 2.2 Consensus size: 81
67245307 CAAATCGAGA
* * *
67245317 GTATTTT-GATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAG-TCAGGGGTATTTTAG
1 GTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTA-AAGATCAAGGGTATTTTAG
*
67245380 TAATTTTACAAACCAGGG
64 TAATTTTACAAACCAAGG
** *
67245398 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCAAGGGTATTTTGGTA
1 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAAAGATCAAGGGTATTTTAGTA
** *
67245463 ATTTTGTAAACTAAGG
66 ATTTTACAAACCAAGG
* *
67245479 GTATTTCAATAATTTT
1 GTATTTTAGTAATTTT
67245495 GTAAATCGAG
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 1 0.01
81 81 0.98
82 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAAAGATCAAGGGTATTTTAGTA
ATTTTACAAACCAAGG
Found at i:67245440 original size:27 final size:27
Alignment explanation
Indices: 67245287--67245467 Score: 213
Period size: 27 Copynumber: 6.7 Consensus size: 27
67245277 TCTACCCTAT
* *
67245287 AGGGGTATTTCGGT-ATTATACAAATC
1 AGGGGTATTTTGGTAATTTTACAAATC
* * *
67245313 -GAGAGTATTTTGATAATTTCACAAATC
1 AG-GGGTATTTTGGTAATTTTACAAATC
*
67245340 AGGGGTATTTTGGTAATTTTACAAGTC
1 AGGGGTATTTTGGTAATTTTACAAATC
* *
67245367 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAATC
* *
67245394 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAATC
***
67245421 AGGGGTATTTTGGTAATTTTATTGATC
1 AGGGGTATTTTGGTAATTTTACAAATC
*
67245448 AAGGGTATTTTGGTAATTTT
1 AGGGGTATTTTGGTAATTTT
67245468 GTAAACTAAG
Statistics
Matches: 134, Mismatches: 18, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
25 1 0.01
26 9 0.07
27 123 0.92
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAATC
Found at i:67245478 original size:27 final size:27
Alignment explanation
Indices: 67245340--67245499 Score: 135
Period size: 27 Copynumber: 5.9 Consensus size: 27
67245330 TTCACAAATC
* * *
67245340 AGGGGTATTTTGGTAATTTTA-CAAGT
1 AGGGGTATTTTAGTAATTTTATAAACT
* *
67245366 CAGGGGTATTTTAGTAATTTTACAAACC
1 -AGGGGTATTTTAGTAATTTTATAAACT
* *
67245394 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTAGTAATTTTATAAACT
* **
67245421 AGGGGTATTTTGGTAATTTTATTGA-T
1 AGGGGTATTTTAGTAATTTTATAAACT
* * *
67245447 CAAGGGTATTTTGGTAATTTTGTAAACT
1 -AGGGGTATTTTAGTAATTTTATAAACT
* * * *
67245475 AAGGGTATTTCAATAATTTTGTAAA
1 AGGGGTATTTTAGTAATTTTATAAA
67245500 TCGAGGATAA
Statistics
Matches: 114, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 111 0.97
28 3 0.03
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTAGTAATTTTATAAACT
Found at i:67245481 original size:54 final size:53
Alignment explanation
Indices: 67245317--67245494 Score: 171
Period size: 54 Copynumber: 3.3 Consensus size: 53
67245307 CAAATCGAGA
* *
67245317 GTATTTT-GATAATTTCACAAATCAGGGGTATTTTGGTAA-TTTTACAAGTCAGGG
1 GTATTTTAG-TAATTTTACAAATCAGGGGTATTTTGGTAATTTTTA-AACT-AGGG
* * * *
67245371 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTT-TAAACTAGGG
* *** * *
67245425 GTATTTTGGTAATTTTATTGATCAAGGGTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTT-TAAACTAGGG
* *
67245479 GTATTTCAATAATTTT
1 GTATTTTAGTAATTTT
67245495 GTAAATCGAG
Statistics
Matches: 101, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
54 94 0.93
55 6 0.06
56 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (53 bp):
GTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTTAAACTAGGG
Found at i:67245518 original size:27 final size:27
Alignment explanation
Indices: 67245488--67245763 Score: 383
Period size: 27 Copynumber: 10.3 Consensus size: 27
67245478 GGTATTTCAA
* * **
67245488 TAATTTTGTAAATCGAGGATAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
67245515 TAATT-TGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* * *
67245541 TAATTCTATAAATCGAGGGTAAAATGA
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67245568 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
**
67245595 TAATTCTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
67245622 TAATTCTATAAATCGATGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67245649 TAATTCTGTAAATCAAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
67245676 TAATTCTGTACATCGAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
67245703 TAATTTTGTAAATCGGGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67245730 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
67245757 TAATTCT
1 TAATTCT
67245764 ATCTTATTTC
Statistics
Matches: 220, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 23 0.10
27 197 0.90
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGG
Found at i:67245808 original size:27 final size:25
Alignment explanation
Indices: 67245778--67245862 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 25
67245768 TATTTCAGTG
67245778 ATTTTACAAATCGAGGATATTTGGGTA
1 ATTTTACAAATCGAGG-TATTT-GGTA
* *
67245805 ATTTTATAAATCGGGGGTACTTTGGTA
1 ATTTTACAAATC-GAGGTA-TTTGGTA
* *
67245832 ATTTTACAAGTCGAAGGTATTTCAGTA
1 ATTTTACAAATCG-AGGTATTT-GGTA
67245859 ATTT
1 ATTT
67245863 GGTAAACTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
26 4 0.08
27 38 0.79
28 6 0.12
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (25 bp):
ATTTTACAAATCGAGGTATTTGGTA
Found at i:67247856 original size:6 final size:6
Alignment explanation
Indices: 67247838--67247925 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
67247828 AAGAAACATT
* *
67247838 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
67247887 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
67247926 GTGAATACAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:67247883 original size:31 final size:31
Alignment explanation
Indices: 67247847--67247925 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
67247837 TATCAGAACT
* *
67247847 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
67247878 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
67247909 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
67247926 GTGAATACAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:67248385 original size:27 final size:27
Alignment explanation
Indices: 67248351--67248571 Score: 327
Period size: 27 Copynumber: 8.2 Consensus size: 27
67248341 ACAAGGCATC
67248351 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
67248378 TCAGTAATTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
67248405 TCGGTATTTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
67248432 TCAGTAATTCTACCTTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
67248459 TCGGTAATTCTACCCTACA-GGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
67248485 GCGATAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
67248512 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
67248539 GCGATAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
67248566 TCGGTA
1 TCGGTA
67248572 TTATACAAAT
Statistics
Matches: 172, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 23 0.13
27 149 0.87
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
TCGGTAATTCTACCCTACAGGGGTATT
Found at i:67248482 original size:107 final size:108
Alignment explanation
Indices: 67248351--67248571 Score: 331
Period size: 107 Copynumber: 2.1 Consensus size: 108
67248341 ACAAGGCATC
* *
67248351 TCGGTAATTCTACCCTACAGGGGTATTTC-AGTAATTCTACCCTACAAGGGTATTTCGGTATTTC
1 TCGGTAATTCTACCCTACAGGGGTATTGCGA-TAATTCTACCCTACAAGGGTATTTCGGTAATTC
* *
67248415 TACCCTACAAGGGTATTTC-AGTAATTCTACCTTACAGGGGTATT
65 TACCCTACAAGGGTATTGCGA-TAATTCTACCCTACAGGGGTATT
* *
67248459 TCGGTAATTCTACCCTACA-GGGTATTGCGATAATTCTACCCTATAGGGGTATTTCGGTAATTCT
1 TCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAAGGGTATTTCGGTAATTCT
* *
67248523 ACCCTACAGGGGTATTGCGATAATTCTACCCTATAGGGGTATT
66 ACCCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATT
67248566 TCGGTA
1 TCGGTA
67248572 TTATACAAAT
Statistics
Matches: 103, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
107 82 0.80
108 21 0.20
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (108 bp):
TCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAAGGGTATTTCGGTAATTCT
ACCCTACAAGGGTATTGCGATAATTCTACCCTACAGGGGTATT
Found at i:67248531 original size:80 final size:80
Alignment explanation
Indices: 67248351--67248565 Score: 313
Period size: 80 Copynumber: 2.7 Consensus size: 80
67248341 ACAAGGCATC
* * * *
67248351 TCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCT
1 TCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAC-AGGGTATTGCGATAATTCT
67248416 ACCCTACAAGGGTATT
65 ACCCTACAAGGGTATT
* *
67248432 TCAGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATTGCGATAATTCTA
1 TCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATTGCGATAATTCTA
* *
67248497 CCCTATAGGGGTATT
66 CCCTACAAGGGTATT
* * *
67248512 TCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACA-GGGTATT
67248566 TCGGTATTAT
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
80 71 0.59
81 49 0.41
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (80 bp):
TCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATTGCGATAATTCTA
CCCTACAAGGGTATT
Found at i:67248614 original size:107 final size:107
Alignment explanation
Indices: 67248398--67248627 Score: 254
Period size: 107 Copynumber: 2.1 Consensus size: 107
67248388 TACCCTACAA
* * *
67248398 GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCGG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTGCAGTAATTCTACCCTACAGGGGTATTTCGG
* ** * **
67248463 TAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTATAG
66 TAATTATACAATACAGAGTATTGCGATAATTCTACCAAATAG
* *
67248505 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTGC-GATAATTCTACCCTATAGGGGTATTTCG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTGCAG-TAATTCTACCCTACAGGGGTATTTCG
**
67248569 GT-ATTATACAA-ATCGAGAGTATTTTGATAATT-T-CACAAATCAG
65 GTAATTATACAATA-C-AGAGTATTGCGATAATTCTAC-CAAAT-AG
*
67248612 GGGTATTTTGGTAATT
1 GGGTATTTCGGTAATT
67248628 TTACAAGTCA
Statistics
Matches: 104, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
105 2 0.02
106 12 0.12
107 90 0.87
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (107 bp):
GGGTATTTCGGTAATTCTACCCTACAAGGGTATTGCAGTAATTCTACCCTACAGGGGTATTTCGG
TAATTATACAATACAGAGTATTGCGATAATTCTACCAAATAG
Found at i:67248694 original size:81 final size:81
Alignment explanation
Indices: 67248587--67248764 Score: 216
Period size: 81 Copynumber: 2.2 Consensus size: 81
67248577 CAAATCGAGA
* * *
67248587 GTATTTT-GATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAG-TCAGGGGTATTTTAG
1 GTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTA-AAGATCAAGGGTATTTTAG
*
67248650 TAATTTTACAAACCAGGG
64 TAATTTTACAAACCAAGG
** *
67248668 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCAAGGGTATTTTGGTA
1 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAAAGATCAAGGGTATTTTAGTA
** *
67248733 ATTTTGTAAACTAAGG
66 ATTTTACAAACCAAGG
* *
67248749 GTATTTCAATAATTTT
1 GTATTTTAGTAATTTT
67248765 GTAAATCGAG
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 1 0.01
81 81 0.98
82 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAAAGATCAAGGGTATTTTAGTA
ATTTTACAAACCAAGG
Found at i:67248710 original size:27 final size:27
Alignment explanation
Indices: 67248557--67248737 Score: 213
Period size: 27 Copynumber: 6.7 Consensus size: 27
67248547 TCTACCCTAT
* *
67248557 AGGGGTATTTCGGT-ATTATACAAATC
1 AGGGGTATTTTGGTAATTTTACAAATC
* * *
67248583 -GAGAGTATTTTGATAATTTCACAAATC
1 AG-GGGTATTTTGGTAATTTTACAAATC
*
67248610 AGGGGTATTTTGGTAATTTTACAAGTC
1 AGGGGTATTTTGGTAATTTTACAAATC
* *
67248637 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAATC
* *
67248664 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAATC
***
67248691 AGGGGTATTTTGGTAATTTTATTGATC
1 AGGGGTATTTTGGTAATTTTACAAATC
*
67248718 AAGGGTATTTTGGTAATTTT
1 AGGGGTATTTTGGTAATTTT
67248738 GTAAACTAAG
Statistics
Matches: 134, Mismatches: 18, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
25 1 0.01
26 9 0.07
27 123 0.92
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAATC
Found at i:67248748 original size:27 final size:27
Alignment explanation
Indices: 67248610--67248769 Score: 135
Period size: 27 Copynumber: 5.9 Consensus size: 27
67248600 TTCACAAATC
* * *
67248610 AGGGGTATTTTGGTAATTTTA-CAAGT
1 AGGGGTATTTTAGTAATTTTATAAACT
* *
67248636 CAGGGGTATTTTAGTAATTTTACAAACC
1 -AGGGGTATTTTAGTAATTTTATAAACT
* *
67248664 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTAGTAATTTTATAAACT
* **
67248691 AGGGGTATTTTGGTAATTTTATTGA-T
1 AGGGGTATTTTAGTAATTTTATAAACT
* * *
67248717 CAAGGGTATTTTGGTAATTTTGTAAACT
1 -AGGGGTATTTTAGTAATTTTATAAACT
* * * *
67248745 AAGGGTATTTCAATAATTTTGTAAA
1 AGGGGTATTTTAGTAATTTTATAAA
67248770 TCGAGGATAA
Statistics
Matches: 114, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 111 0.97
28 3 0.03
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTAGTAATTTTATAAACT
Found at i:67248751 original size:54 final size:53
Alignment explanation
Indices: 67248587--67248764 Score: 171
Period size: 54 Copynumber: 3.3 Consensus size: 53
67248577 CAAATCGAGA
* *
67248587 GTATTTT-GATAATTTCACAAATCAGGGGTATTTTGGTAA-TTTTACAAGTCAGGG
1 GTATTTTAG-TAATTTTACAAATCAGGGGTATTTTGGTAATTTTTA-AACT-AGGG
* * * *
67248641 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTT-TAAACTAGGG
* *** * *
67248695 GTATTTTGGTAATTTTATTGATCAAGGGTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTT-TAAACTAGGG
* *
67248749 GTATTTCAATAATTTT
1 GTATTTTAGTAATTTT
67248765 GTAAATCGAG
Statistics
Matches: 101, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
54 94 0.93
55 6 0.06
56 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (53 bp):
GTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTTAAACTAGGG
Found at i:67248788 original size:27 final size:27
Alignment explanation
Indices: 67248758--67249033 Score: 392
Period size: 27 Copynumber: 10.3 Consensus size: 27
67248748 GGTATTTCAA
* * *
67248758 TAATTTTGTAAATCGAGGATAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
67248785 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* * *
67248812 TAATTCTATAAATCGAGGGTAAAATGA
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67248839 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* **
67248866 TTATTCTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
67248893 TAATTCTATAAATCGATGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67248920 TAATTCTGTAAATCAAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
67248947 TAATTCTGTACATCGAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67248974 TAATTTTGTAAATCG-GGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67249000 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
67249027 TAATTCT
1 TAATTCT
67249034 ATCTTATTTC
Statistics
Matches: 220, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 24 0.11
27 196 0.89
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGG
Found at i:67249078 original size:27 final size:25
Alignment explanation
Indices: 67249048--67249132 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 25
67249038 TATTTCAGTG
67249048 ATTTTACAAATCGAGGATATTTGGGTA
1 ATTTTACAAATCGAGG-TATTT-GGTA
* *
67249075 ATTTTATAAATCGGGGGTACTTTGGTA
1 ATTTTACAAATC-GAGGTA-TTTGGTA
* *
67249102 ATTTTACAAGTCGAAGGTATTTCAGTA
1 ATTTTACAAATCG-AGGTATTT-GGTA
67249129 ATTT
1 ATTT
67249133 GGTAAACTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
26 4 0.08
27 38 0.79
28 6 0.12
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (25 bp):
ATTTTACAAATCGAGGTATTTGGTA
Found at i:67255430 original size:42 final size:42
Alignment explanation
Indices: 67255376--67255502 Score: 148
Period size: 42 Copynumber: 3.0 Consensus size: 42
67255366 TAGGGTTACT
* *
67255376 GAGATTACGTGTAAGACCATAACTGGGATATGGCATCGGTAT
1 GAGATTACGTGTAAGACCATAACTGGGATATGGCATTGGTAC
* * * *
67255418 GAGACTT-TGTGTAAGACCATAGCTGGGCTATTGGCATTGATAC
1 GAGA-TTACGTGTAAGACCATAACTGGGATA-TGGCATTGGTAC
* **
67255461 GAGATTACATGTAAGACCATATTTGGGATATGGCATTGGTAC
1 GAGATTACGTGTAAGACCATAACTGGGATATGGCATTGGTAC
67255503 AATACTGTGT
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
42 37 0.53
43 33 0.47
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATAACTGGGATATGGCATTGGTAC
Found at i:67260239 original size:39 final size:39
Alignment explanation
Indices: 67260195--67260273 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
67260185 TTGCTAAAAG
* *
67260195 AAAAACAATGACAATTGAGAGGCTTCCTAGCTAGGTTGA
1 AAAAACAATGAAAATTGAGAGGCGTCCTAGCTAGGTTGA
67260234 AAAAACAATGAAAATTGAGAGGCGTCCTAGCTAGGTTGA
1 AAAAACAATGAAAATTGAGAGGCGTCCTAGCTAGGTTGA
67260273 A
1 A
67260274 TGACTAACCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (39 bp):
AAAAACAATGAAAATTGAGAGGCGTCCTAGCTAGGTTGA
Found at i:67268713 original size:40 final size:40
Alignment explanation
Indices: 67268611--67268794 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
67268601 AAATTGAATG
* * * * *
67268611 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
67268651 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
67268691 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
67268731 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
67268771 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
67268795 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:67281089 original size:26 final size:26
Alignment explanation
Indices: 67281025--67281121 Score: 88
Period size: 26 Copynumber: 3.7 Consensus size: 26
67281015 CCATAGATCG
* **
67281025 CCACAAAGGCTTCTATTTCATG-TATTG
1 CCACAAAGGCTTCCATTTCA-GATA-CA
* *
67281052 CCACAAAAGCTTTCATTTCAGATACA
1 CCACAAAGGCTTCCATTTCAGATACA
* *
67281078 CCACAAAGGCTTCCATTTTAGATACC
1 CCACAAAGGCTTCCATTTCAGATACA
**
67281104 CCACAAAGATTTCCATTT
1 CCACAAAGGCTTCCATTT
67281122 TCTGACGTGT
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
26 39 0.67
27 19 0.33
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.31
Consensus pattern (26 bp):
CCACAAAGGCTTCCATTTCAGATACA
Found at i:67281317 original size:49 final size:50
Alignment explanation
Indices: 67281232--67281329 Score: 117
Period size: 49 Copynumber: 2.0 Consensus size: 50
67281222 CTTTTAGTTC
* * * *
67281232 TTTCCATATGATGCCCTAACCCACCAATTATAGTCTT-CACGATATGGTA
1 TTTCCATAAGATGCCATAACCCACCAACTACAGTCTTACACGATATGGTA
* * * *
67281281 TTTCCATAAGATGCCATAGCCCGCCAACTACGGTCTTACATGATATGGT
1 TTTCCATAAGATGCCATAACCCACCAACTACAGTCTTACACGATATGGT
67281330 GCAATGGACT
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
49 30 0.75
50 10 0.25
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.31
Consensus pattern (50 bp):
TTTCCATAAGATGCCATAACCCACCAACTACAGTCTTACACGATATGGTA
Found at i:67283878 original size:47 final size:47
Alignment explanation
Indices: 67283800--67284260 Score: 626
Period size: 47 Copynumber: 9.7 Consensus size: 47
67283790 CCCTTCGGGA
* * * * * *
67283800 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* * *
67283847 CCTGTCACATATATACACCTTCACATTCATCACATTGGCTATTCA-GC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATT-AGGC
67283894 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
67283941 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
67283990 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATT-AGGC
*
67284039 CTTA-CACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* * *
67284085 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
67284134 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATT-AGGC
*
67284183 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
67284230 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
67284261 GCGTAAAATC
Statistics
Matches: 373, Mismatches: 24, Indels: 34
0.87 0.06 0.08
Matches are distributed among these distances:
45 1 0.00
46 31 0.08
47 164 0.44
48 15 0.04
49 160 0.43
50 2 0.01
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:67283925 original size:25 final size:25
Alignment explanation
Indices: 67283851--67283928 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
67283841 CTCGGCCCTG
67283851 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
** *
67283876 TCACAT-T-GGCTA--TTCAGCCTT-A
1 TCACATATATAC-ACCTTCA-CATTCA
67283898 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
67283923 TCACAT
1 TCACAT
67283929 CTGCCATTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 11 0.28
23 6 0.15
24 6 0.15
25 17 0.43
ACGTcount: A:0.32, C:0.31, G:0.04, T:0.33
Consensus pattern (25 bp):
TCACATATATACACCTTCACATTCA
Found at i:67283974 original size:49 final size:47
Alignment explanation
Indices: 67283800--67284260 Score: 569
Period size: 49 Copynumber: 9.7 Consensus size: 47
67283790 CCCTTCGGGA
* * * * *
67283800 CTTATCACATTTATACACTTTCACATCCATCACGT-TGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCT-GCCATTAGGC
* * * *
67283847 CCTGTCACATATATACACCTTCACATTCATCACAT-TGGCTATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCT-GCCATT-AGGC
*
67283894 CTTATCACATATATACACCTTCACATTCATCACATCTGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCTGCCATTAGGC
*
67283941 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCTGCCATTAGGC
67283990 CTTATCACATATATACACACTTTCACATTCATCACAT-TGGCCATTCA-GC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCT-GCCATT-AGGC
* *
67284039 CTTA-CACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCTGCCATTAGGC
* *
67284085 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCTGCCATTAGGC
67284134 CTTATCACATATATACACACTTTCACATTCATCACAT-TGGCCATTCA-GC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCT-GCCATT-AGGC
* *
67284183 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCTGCCATTAGGC
*
67284230 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACTTTCACATTCATC
67284261 GCGTAAAATC
Statistics
Matches: 370, Mismatches: 24, Indels: 40
0.85 0.06 0.09
Matches are distributed among these distances:
45 1 0.00
46 34 0.09
47 158 0.43
48 10 0.03
49 165 0.45
50 2 0.01
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCTGCCATTAGGC
Found at i:67284083 original size:144 final size:145
Alignment explanation
Indices: 67283800--67284260 Score: 774
Period size: 144 Copynumber: 3.2 Consensus size: 145
67283790 CCCTTCGGGA
* * * * * * *
67283800 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67283863 AC-C-TTCACATTCATCACATTGGCTATTCAGCCTTATCACATATATACACCTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACACCTTCACATTCATCA
*
67283926 CATCTGCCATTAGGC
131 CATCGGCCATTAGGC
67283941 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67284006 ACACTTTCACATTCATCACATTGGCCATTCAGCCTTA-CACATATATACACCTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACACCTTCACATTCATCA
67284070 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
*
67284085 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67284150 ACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACACCTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACACCTTCACATTCATCA
67284215 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
*
67284230 CTTATCAC--ATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
67284261 GCGTAAAATC
Statistics
Matches: 303, Mismatches: 12, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
141 10 0.03
142 1 0.00
143 68 0.22
144 143 0.47
145 81 0.27
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (145 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACACCTTCACATTCATCA
CATCGGCCATTAGGC
Found at i:67288061 original size:43 final size:43
Alignment explanation
Indices: 67288000--67288264 Score: 476
Period size: 43 Copynumber: 6.2 Consensus size: 43
67287990 CCTTGCTCGA
** * * *
67288000 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
67288043 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
67288086 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
*
67288129 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
67288172 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
67288215 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
67288258 ATCACCG
1 ATCACCG
67288265 CATGACTGCT
Statistics
Matches: 215, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 215 1.00
ACGTcount: A:0.31, C:0.32, G:0.22, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
Found at i:67288436 original size:42 final size:42
Alignment explanation
Indices: 67288246--67288456 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 42
67288236 AGGCTCGAAG
* * * * * * *
67288246 GCCCGAATACATATCACC-GCATGACTGCTCTTCGGAACCTG
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * * * *
67288287 GTCCGG--ATACATCACTAGCATGAATGCTCTTCGGGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * *
67288327 GCCCGG--ATATATCACTAGCATGAATGCTCTTCGGGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
67288367 GCCCGGATGTA-A-CACCAGCACGAATGCTCTACGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
67288407 ACCCGGATATATATCGCCAGCACGAATGCTCTTCGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
67288449 GCCCGGAT
1 GCCCGGAT
67288457 CATCGTCGAG
Statistics
Matches: 143, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
39 7 0.05
40 95 0.66
41 6 0.04
42 35 0.24
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (42 bp):
GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
Found at i:67288454 original size:82 final size:80
Alignment explanation
Indices: 67288303--67288456 Score: 218
Period size: 82 Copynumber: 1.9 Consensus size: 80
67288293 ATACATCACT
* * * * * * *
67288303 AGCATGAATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGGATTTAG
1 AGCACGAATGCTCTACGGGACTTAACCCGGATATATCACCAGCACGAATGCTCTTCGGGACTTAG
67288368 CCCGGATGTAACACC
66 CCCGGATGTAACACC
*
67288383 AGCACGAATGCTCTACGGGACTTAACCCGGATATATATCGCCAGCACGAATGCTCTTCGGGACTT
1 AGCACGAATGCTCTACGGGACTTAACCCGG--ATATATCACCAGCACGAATGCTCTTCGGGACTT
67288448 AGCCCGGAT
64 AGCCCGGAT
67288457 CATCGTCGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 26 0.41
82 38 0.59
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
AGCACGAATGCTCTACGGGACTTAACCCGGATATATCACCAGCACGAATGCTCTTCGGGACTTAG
CCCGGATGTAACACC
Found at i:67290509 original size:25 final size:25
Alignment explanation
Indices: 67290435--67290512 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
67290425 CTCGGCCCTG
67290435 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
** *
67290460 TCACAT-T-GGCTA--TTCAGCCTT-A
1 TCACATATATAC-ACCTTCA-CATTCA
67290482 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
67290507 TCACAT
1 TCACAT
67290513 CTGCCATTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 11 0.28
23 6 0.15
24 6 0.15
25 17 0.43
ACGTcount: A:0.32, C:0.31, G:0.04, T:0.33
Consensus pattern (25 bp):
TCACATATATACACCTTCACATTCA
Found at i:67290558 original size:49 final size:49
Alignment explanation
Indices: 67290384--67290845 Score: 548
Period size: 47 Copynumber: 9.7 Consensus size: 49
67290374 CCCTTCGGGA
* * * *
67290384 CTTATCACAT-T-TATACACTTTCACATCCATCACGT-TGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCT-GCCATTAGGC
* * * *
67290431 CCTGTCAC--ATATATACACCTTCACATTCATCACAT-TGGCTATTCA-GC
1 CTTATCACATATATATACACTTTCACATTCATCACATCT-GCCATT-AGGC
*
67290478 CTTATCAC--ATATATACACCTTCACATTCATCACATCTGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCTGCCATTAGGC
*
67290525 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCTGCCATTAGGC
*
67290574 CTTATCACATATATACACACTTTCACATTCATCACAT-TGGCCATTCA-GC
1 CTTATCACATATATATACACTTTCACATTCATCACATCT-GCCATT-AGGC
* * *
67290623 CTTA-C-CACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCTGCCATTAGGC
* *
67290670 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCTGCCATTAGGC
*
67290719 CTTATCACATATATACACACTTTCACATTCATCACAT-TGGCCATTCA-GC
1 CTTATCACATATATATACACTTTCACATTCATCACATCT-GCCATT-AGGC
* *
67290768 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCTGCCATTAGGC
*
67290815 CTTATCAC--ATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
67290846 GCGTAAAATC
Statistics
Matches: 369, Mismatches: 29, Indels: 34
0.85 0.07 0.08
Matches are distributed among these distances:
46 4 0.01
47 185 0.50
48 3 0.01
49 175 0.47
50 2 0.01
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCTGCCATTAGGC
Found at i:67290581 original size:96 final size:95
Alignment explanation
Indices: 67290384--67290845 Score: 591
Period size: 96 Copynumber: 4.8 Consensus size: 95
67290374 CCCTTCGGGA
* * * * * * * *
67290384 CTTATCACATTTATACACTTTCACATCCATCACGT-TGGCCACTCGGCCCTGTCAC-ATATATAC
1 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACAATATATAC
* *
67290447 ACCTTCACATTCATCACATTGGCTATTCAGC
65 ACCTTCACATTCATCACATCGGCCATTCAGC
67290478 CTTATCACATATATACACCTTCACATTCATCACATCTGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACCTTCACATTCATCACATCTGCCATTAGGCCTTATCACA-ATATATAC
*
67290543 ACTTTCACATTCATCACATCGGCCATT-AGGC
65 ACCTTCACATTCATCACATCGGCCATTCA-GC
*
67290574 CTTATCACATATATACACACTTTCACATTCATCACAT-TGGCCATTCA-GCCTTACCAC-ATATA
1 CTTATCACATATATACAC-C-TTCACATTCATCACATCT-GCCATT-AGGCCTTATCACAATATA
67290636 TACACCTTCACATTCATCACATCGGCCATT-AGGC
62 TACACCTTCACATTCATCACATCGGCCATTCA-GC
* * *
67290670 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACCTTCACATTCATCACATCTGCCATTAGGCCTTATCACAATATATA
*
67290734 CACACTTTCACATTCATCACATTGGCCATTCAGC
64 CAC-C-TTCACATTCATCACATCGGCCATTCAGC
*
67290768 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACCTTCACATTCATCACATCTGCCATTAGGCCTTATCACAATATATACA
*
67290832 CATTCACATTCATC
66 CCTTCACATTCATC
67290846 GCGTAAAATC
Statistics
Matches: 332, Mismatches: 21, Indels: 30
0.87 0.05 0.08
Matches are distributed among these distances:
94 57 0.17
95 3 0.01
96 193 0.58
97 3 0.01
98 74 0.22
99 2 0.01
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATACACCTTCACATTCATCACATCTGCCATTAGGCCTTATCACAATATATACA
CCTTCACATTCATCACATCGGCCATTCAGC
Found at i:67290656 original size:145 final size:145
Alignment explanation
Indices: 67290384--67290845 Score: 774
Period size: 145 Copynumber: 3.2 Consensus size: 145
67290374 CCCTTCGGGA
* * * * * * *
67290384 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67290447 AC-C-TTCACATTCATCACATTGGCTATTCAGCCTTATCACATATATACACCTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACACCTTCACATTCATCA
*
67290510 CATCTGCCATTAGGC
131 CATCGGCCATTAGGC
67290525 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67290590 ACACTTTCACATTCATCACATTGGCCATTCAGCCTTACCACATATATACACCTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACACCTTCACATTCATCA
67290655 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
*
67290670 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67290735 ACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACACCTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACACCTTCACATTCATCA
67290800 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
*
67290815 CTTATCAC--ATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
67290846 GCGTAAAATC
Statistics
Matches: 303, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
141 10 0.03
142 1 0.00
143 68 0.22
144 1 0.00
145 223 0.74
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (145 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACACCTTCACATTCATCA
CATCGGCCATTAGGC
Found at i:67293868 original size:47 final size:48
Alignment explanation
Indices: 67293787--67293906 Score: 122
Period size: 47 Copynumber: 2.6 Consensus size: 48
67293777 TAAGCCTGTA
* * * *
67293787 TAAGA-CATGTCTAGGACAT-GCATCGACTACGAGATGAT-AGTTAATG
1 TAAGACCATGTCTGGGACATGGCATCAACTACGAGAT-ATAAGCTAACG
* * *
67293833 TAAGACCATGTCTGGGACATGGCATCAAC-ATGAGATTTAAGCTAGCG
1 TAAGACCATGTCTGGGACATGGCATCAACTACGAGATATAAGCTAACG
* *
67293880 TAGGACCGTGTCTGGGACATGGCATCA
1 TAAGACCATGTCTGGGACATGGCATCA
67293907 GCTCTTTACC
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
46 6 0.10
47 49 0.79
48 7 0.11
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCAACTACGAGATATAAGCTAACG
Found at i:67297016 original size:25 final size:25
Alignment explanation
Indices: 67296975--67297025 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
67296965 TGAGAAATAG
*
67296975 TTGAGAAAATGACATGAAGCTTACT
1 TTGAGAAAAGGACATGAAGCTTACT
*
67297000 TTGAGAAAAGGATATGAAGCTTACT
1 TTGAGAAAAGGACATGAAGCTTACT
67297025 T
1 T
67297026 AGCTTTAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (25 bp):
TTGAGAAAAGGACATGAAGCTTACT
Found at i:67301270 original size:47 final size:47
Alignment explanation
Indices: 67301158--67301425 Score: 209
Period size: 47 Copynumber: 5.7 Consensus size: 47
67301148 GGTTATTGTG
* *
67301158 AGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCA-C-ATTATGAG-
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATC-GACATCGA-GATG-GT
* * *
67301204 AGCCAGTGTAAGACTATGTCTGGGACATGGCATTGGCATCGAGATAGGT
1 AGCTAGTGTAAGAC-ATGTCTGGGACATGGCATCGACATCGAGAT-GGT
* * *
67301253 -GCTAGTGTAAGACATGTCTGGGATAT-GCATCGACCTCAAGAT-GT
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACATCGAGATGGT
* * *
67301297 AAGCCT-GTGTAAGACATGTCTGGGACAT-GCATTGGC-TACGAGATGAT
1 -AG-CTAGTGTAAGACATGTCTGGGACATGGCATCGACAT-CGAGATGGT
* * * *
67301344 AGTTAGTGTGAGACCATGTCTAGGACATGGCATCGACAT-GAGAT-AT
1 AGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGACATCGAGATGGT
*
67301390 GAACTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -AGCTAGTGTAAGA-CATGTCTGGGACATGGCATCG
67301426 GCTCCTTACC
Statistics
Matches: 182, Mismatches: 24, Indels: 31
0.77 0.10 0.13
Matches are distributed among these distances:
44 2 0.01
45 2 0.01
46 69 0.38
47 80 0.44
48 26 0.14
49 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACATCGAGATGGT
Found at i:67301415 original size:140 final size:141
Alignment explanation
Indices: 67301163--67301425 Score: 343
Period size: 140 Copynumber: 1.9 Consensus size: 141
67301153 TTGTGAGCTA
* * *
67301163 GTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACTATGTCTGGG
1 GTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAGG
* * ** *
67301228 ACATGGCATTGGCATCGAGATAGGTGCTAGTGTAAGACATGTCTGGGATAT-GCATCGACCTCAA
66 ACATGGCATCGACATCGAGATAGGAACTAGTGTAAGACATGTCTGGGACATGGCATCGACCTCAA
67301292 GATGTAAGCCT
131 GATGTAAGCCT
** * * ** *
67301303 GTGTAAGACATGTCTGGGACATGCATTGGCTACGA-GATGATAGTTAGTGTGAGACCATGTCTAG
1 GTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATGAGAGCCAGTGTAAGACCATGTCTAG
*
67301367 GACATGGCATCGACAT-GAGATATGAACTAGTGTAAGACCATGTCTGGGACATGGCATCG
65 GACATGGCATCGACATCGAGATAGGAACTAGTGTAAGA-CATGTCTGGGACATGGCATCG
67301426 GCTCCTTACC
Statistics
Matches: 104, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
139 18 0.17
140 79 0.76
141 7 0.07
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (141 bp):
GTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAGG
ACATGGCATCGACATCGAGATAGGAACTAGTGTAAGACATGTCTGGGACATGGCATCGACCTCAA
GATGTAAGCCT
Found at i:67305552 original size:57 final size:58
Alignment explanation
Indices: 67305441--67305565 Score: 146
Period size: 57 Copynumber: 2.2 Consensus size: 58
67305431 ACAATGGGGT
* * * * * *
67305441 TTCAATTTTTTTTGTTCAAATTAGGTCCTGAACTTGACAATTGTTCTCACATTGGGGC
1 TTCAAATTTTTTTGTTCAAATTAGGCCCTGAACTTGACAAATATTCCCACATTGGGAC
* * *
67305499 TT-AAATTTTTTT-TTCAAGTTAGGCCCCTGAACTTGATAAATATTCCCATATTGGGAC
1 TTCAAATTTTTTTGTTCAAATTAGG-CCCTGAACTTGACAAATATTCCCACATTGGGAC
67305556 TTCAAATTTT
1 TTCAAATTTT
67305566 CTTTATCCAA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
56 10 0.18
57 37 0.66
58 9 0.16
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (58 bp):
TTCAAATTTTTTTGTTCAAATTAGGCCCTGAACTTGACAAATATTCCCACATTGGGAC
Found at i:67308998 original size:25 final size:26
Alignment explanation
Indices: 67308938--67308986 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
67308928 ATTTGTTTTA
*
67308938 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
67308962 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
67308987 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:67311243 original size:138 final size:139
Alignment explanation
Indices: 67310982--67311328 Score: 382
Period size: 140 Copynumber: 2.5 Consensus size: 139
67310972 TGTTGCTTCT
* * * * * *
67310982 AGCTTGAAGTAACATAAAAT-AAAAATACAAATATGAGTAGTAAAGGAATTGAACTTGAGACT-A
1 AGCTTGAAGCAACATGAAATAAAAAATACAAATGTGAGTAGGAAA-GAATTGAACCTAAGACTCA
* * *
67311045 AGGATGTAATTGTAATTATATAACCATCCAACGAAAGAACTAGTATATTAAAAAAAAATTAAAAT
65 AGGATGTAATTGCAACTATATAACCATCCAACGAAAGAACTAATATATTAAAAAAAAATT--AAT
67311110 TAAAA-AT-AAA
128 TAAAATATAAAA
* * *
67311120 A-CTTGAAGCAACATGAAATAAAAAATATAAACGTAAGTAGGAAAGAATTTGAACCTAAGACTCA
1 AGCTTGAAGCAACATGAAATAAAAAATACAAATGTGAGTAGGAAAGAA-TTGAACCTAAGACTCA
* * * * * *
67311184 AGGATGTATTTGCAACTATCTAACCATCTAACTAAAGAACTAATATGTT-TAAAAAAATTAATTA
65 AGGATGTAATTGCAACTATATAACCATCCAACGAAAGAACTAATATATTAAAAAAAAATTAATTA
*
67311248 AAATTTTAAAA
130 AAA-TATAAAA
* * ** *
67311259 AGCCTGAAGCAACATGAAATAAAAAATACAAATGTGAGTAGGAGAGAAATCAAACCCAAGACTCA
1 AGCTTGAAGCAACATGAAATAAAAAATACAAATGTGAGTAGGAAAG-AATTGAACCTAAGACTCA
67311324 AGGAT
65 AGGAT
67311329 AGAAACATTA
Statistics
Matches: 174, Mismatches: 27, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
136 8 0.05
137 19 0.11
138 42 0.24
139 46 0.26
140 57 0.33
141 2 0.01
ACGTcount: A:0.51, C:0.11, G:0.14, T:0.24
Consensus pattern (139 bp):
AGCTTGAAGCAACATGAAATAAAAAATACAAATGTGAGTAGGAAAGAATTGAACCTAAGACTCAA
GGATGTAATTGCAACTATATAACCATCCAACGAAAGAACTAATATATTAAAAAAAAATTAATTAA
AATATAAAA
Found at i:67314984 original size:39 final size:39
Alignment explanation
Indices: 67314933--67315115 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
67314923 AATGTTCGAG
67314933 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
67314972 TGATATCAGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
67315011 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
67315050 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
67315090 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
67315116 GTTTGAACGA
Statistics
Matches: 124, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 86 0.69
40 38 0.31
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:67317403 original size:12 final size:14
Alignment explanation
Indices: 67317388--67317454 Score: 57
Period size: 16 Copynumber: 4.6 Consensus size: 14
67317378 AATAGGGGTG
67317388 ATAATAATA-ATA-
1 ATAATAATACATAC
*
67317400 ATAATAATACAAAC
1 ATAATAATACATAC
67317414 AATAATACATACATAC
1 -ATAATA-ATACATAC
* *
67317430 ATATATATATATATAT
1 ATA-ATA-ATACATAC
67317446 ATAATAATA
1 ATAATAATA
67317455 GTAGTCAGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
12 9 0.20
13 2 0.04
14 3 0.07
15 12 0.27
16 19 0.42
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAATAATACATAC
Found at i:67317542 original size:3 final size:3
Alignment explanation
Indices: 67317529--67317611 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
67317519 GAGGGCATAT
67317529 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
67317573 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
67317612 AAAAATAAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 9 0.14
3 45 0.69
4 9 0.14
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:67317553 original size:12 final size:12
Alignment explanation
Indices: 67317529--67317612 Score: 75
Period size: 12 Copynumber: 6.8 Consensus size: 12
67317519 GAGGGCATAT
67317529 ATAATAT-AATA
1 ATAATATAAATA
67317540 ATAATATAAATA
1 ATAATATAAATA
67317552 ATAATATATACATGA
1 ATAATATA-A-AT-A
67317567 GA-AATA-ATAATA
1 -ATAATATA-AATA
67317579 ATAATATAAATA
1 ATAATATAAATA
* *
67317591 ATAGTAAAAATA
1 ATAATATAAATA
*
67317603 ATAAAATAAA
1 ATAATATAAA
67317613 AAAATAAAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
11 8 0.13
12 38 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:67317573 original size:21 final size:18
Alignment explanation
Indices: 67317534--67317593 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
67317524 CATATATAAT
*
67317534 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
67317552 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
67317573 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
67317591 ATA
1 ATA
67317594 GTAAAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
18 15 0.41
19 5 0.14
20 5 0.14
21 12 0.32
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:67318794 original size:43 final size:42
Alignment explanation
Indices: 67318732--67319665 Score: 309
Period size: 43 Copynumber: 21.6 Consensus size: 42
67318722 CGTCTTCGAT
* *
67318732 CTGTTTCCCTACTGCTTAGGATGTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTAGG-GGTTAAGATCTGTAAATTTAGC
* * * ** * *
67318775 CTGTTACCCTACTGTTTAGGGGTTAAG-GCTTGTCACCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTAAGATC-TGTAAATTTAG-C
* *
67318818 CTGTTTCCCTACTTCTTAGGGGGTTTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTTA-GGGG-TTAAGATCTGTAAAT-TT-AGC
* * ** * *
67318864 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTCACCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATC-TGTAAATTTAG-C
* * *
67318908 CTGTTTCCCTACTGTTTA--GG----G-TCTGTAAATTTAAC
1 CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAGC
* * * ** * *
67318943 CTGTTACCTTACTACTTAGGGGTTTAAG-GCT-TATCGTCTTTGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTA-AAT-TTAG-C
* * * *
67318987 CTGTTTCCCTACTGCTTAGGGGGTTAAAATCTGTAAATTCATC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
** ** **** * *
67319030 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTAAATTTAG-C
* * * *
67319074 CTATTTCCCTACTGCTTAGGGGTTAAGATCTATAAATTCCA-C
1 CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATT-TAGC
* ** **** * *
67319116 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTAAATTTAG-C
* * *
67319160 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCA-C
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATT-TAGC
* *** *
67319203 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCG-CCTTTTA-T
1 CTGTTACCCTACTGCTTAGGGG-TTAAGAT-C-T-GTAAATTTAGC
* *
67319247 CTGATT-CCCTACTGCTTAGGGGGTTAAGATCTATAAATTCCA-C
1 CTG-TTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATT-TAGC
* * * ** *
67319290 CTATTACCCTACTACTTAGGGGTTTAAGGTTCATCG--CCTTT-GAT
1 CTGTTACCCTACTGCTTAGGGG-TTAA-GATC-T-GTAAATTTAG-C
* ** *
67319334 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCCAAC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* ** *
67319377 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCG--CCTTT-GAT
1 CTGTTACCCTACTGCTTAGGGG-TTAA-GATC-T-GTAAATTTAG-C
* * *
67319421 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATTTAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* ** *** * *
67319464 CTGTTACCCTACTACTTAGGGAGTTAAGGCCTGTCGCTTTCGAT
1 CTGTTACCCTACTGCTTAGGG-GTTAAGATCTGTAAATTTAG-C
* * * *
67319508 TTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAAC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* * * ** *
67319551 CTATTACCCTACTACTTAGGGGTTTAAGGTTCATCG--CCTTT-GAT
1 CTGTTACCCTACTGCTTAGGGG-TTAA-GATC-T-GTAAATTTAG-C
*
67319595 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* *
67319638 CTGTTACCCTACTACTTATGGAGTTAAG
1 CTGTTACCCTACTGCTTA-GGGGTTAAG
67319666 GCCCGTCACT
Statistics
Matches: 624, Mismatches: 197, Indels: 140
0.65 0.20 0.15
Matches are distributed among these distances:
35 14 0.02
36 6 0.01
37 4 0.01
41 5 0.01
42 70 0.11
43 227 0.36
44 212 0.34
45 61 0.10
46 24 0.04
47 1 0.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (42 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAGC
Found at i:67318795 original size:87 final size:87
Alignment explanation
Indices: 67318682--67319705 Score: 1268
Period size: 87 Copynumber: 11.9 Consensus size: 87
67318672 AGTTGTAATT
* * *
67318682 TTCAGCTTGGTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
**
67318747 TTAGGATGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * *** * *
67318769 TTTAGCCTGTTACCCTACTGTTTAGGGG-TTAAGGCTTGTCACCTTCGATCTGTTTCCCTACTTC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
67318833 TTAGGGGGTTTAAGATCTGTAAA
66 TTAGGGGG-TTAAGATCTGTAAA
*** *
67318856 TCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCACCTTCGATCTGTTTCCCTACT
1 --TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACT
*
67318921 GTTTA---GG----G-TCTGTAAA
64 GCTTAGGGGGTTAAGATCTGTAAA
* * * * ** * *
67318937 TTTAACCTGTTACCTTACTACTTAGGGGTTTAAGGCTTATCGTCTTTGATCTGTTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
*
67319002 TTAGGGGGTTAAAATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* *
67319024 TTCATCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTATTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
*
67319089 TTA-GGGGTTAAGATCTATAAA
66 TTAGGGGGTTAAGATCTGTAAA
* *
67319110 TTCCA-CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTATTTCCCTACTG
1 TT-CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTG
67319174 CTTAGGGGGTTAAGATCTGTAAA
65 CTTAGGGGGTTAAGATCTGTAAA
* ** *
67319197 TTCCA-CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTTATCTGATTCCCTACTG
1 TT-CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTG
*
67319261 CTTAGGGGGTTAAGATCTATAAA
65 CTTAGGGGGTTAAGATCTGTAAA
* * ** *
67319284 TTCCA-CCTATTACCCTACTACTTAGGGGTTTAAGGTTCATCGCCTTTGATCTGTTTCCCTACTG
1 TT-CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTG
67319348 CTTAGGGGGTTAAGATCTGTAAA
65 CTTAGGGGGTTAAGATCTGTAAA
* * ** * *
67319371 TCCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTTGATCTATTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
*
67319436 TTAGGGGGTTAAGATCTATAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * ** * *
67319458 TTTAGCCTGTTACCCTACTACTTAGGGAG-TTAAGGCCTGTCGCTTTCGATTTGTTTCCCTACTG
1 TTCAGCCTGTTACCCTACTGCTTAGGG-GTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTG
67319522 CTTAGGGGGTTAAGATCTGTAAA
65 CTTAGGGGGTTAAGATCTGTAAA
* * * ** *
67319545 TTCAACCTATTACCCTACTACTTAGGGGTTTAAGGTTCATCGCCTTTGATCTGTTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
67319610 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * * * * * *
67319632 TTTAGCCTGTTACCCTACTACTTATGGAG-TTAAGGCCCGTCACTTTCGATCTGCTTCCCTACTG
1 TTCAGCCTGTTACCCTACTGCTTA-GGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTG
67319696 CTTAGGGGGT
65 CTTAGGGGGT
67319706 CAAATCTACT
Statistics
Matches: 830, Mismatches: 89, Indels: 36
0.87 0.09 0.04
Matches are distributed among these distances:
79 59 0.07
81 8 0.01
82 3 0.00
86 119 0.14
87 574 0.69
88 4 0.00
89 26 0.03
90 37 0.04
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (87 bp):
TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
TTAGGGGGTTAAGATCTGTAAA
Found at i:67319946 original size:132 final size:132
Alignment explanation
Indices: 67319706--67320647 Score: 1461
Period size: 132 Copynumber: 7.1 Consensus size: 132
67319696 CTTAGGGGGT
* * * *
67319706 CAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* *
67319771 CTTCACTGTAAGCACAGTAATGTCAGATCTGCTATCTTCGATCTATTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
*
67319836 GT
131 GC
*
67319838 CAAATCTGCTATTTTCAACTTATTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * *
67319903 CTTCACTGTAAGCATAGGACTGTCAGATCTACTATCTTTGATCTGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
67319968 GC
131 GC
*
67319970 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * *
67320035 CTTCACTGTAAGAACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCATAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
67320100 GC
131 GC
* * *
67320102 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCCGAAATCTTTGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* *
67320167 CTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
67320232 GC
131 GC
* * * * *
67320234 CAAATCTACTATTTTCAACTTGTTCCCTATAAGCACAAGAATGCCATGCTAAAATCTTTGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * *
67320299 CTTCACTGTAAGTACAGGAATGTTAGATCTGCTATCTTCGATATGTTCCCTATAAACACAGTGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
67320364 GC
131 GC
* * * *
67320366 CAAATCTGTTATTTTCAACTTTTTCTCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTA
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * * *
67320431 CTTCACTGTAAGCACAGGAATGTTAGATCTGTTATCTTCGATCTATTCCCTATAAGCACAAGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
67320496 GC
131 GC
*
67320498 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGACGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * *
67320563 CTTCACTATAAGCACGGGAATGTCAGATCTGCTATCTTTGATCTGTTCCCTATAAACATAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
67320628 GC
131 GC
* *
67320630 CAAATCTGCAATCTTCAA
1 CAAATCTGCTATTTTCAA
67320648 TCTGCTCTCC
Statistics
Matches: 740, Mismatches: 70, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 740 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (132 bp):
CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
GC
Found at i:67320769 original size:88 final size:88
Alignment explanation
Indices: 67320641--67321048 Score: 710
Period size: 88 Copynumber: 4.6 Consensus size: 88
67320631 AAATCTGCAA
* * * * * *
67320641 TCTTCAATCTGCTCTCCGCC-GCTACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCCCCGCCTGGTACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
67320705 ACGTGAAAGCCAAATCAGCTATG
66 ACGTGAAAGCCAAATCAGCTATG
67320728 TCTTCGATCTGCTCCCCGCCTGGTACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCCCCGCCTGGTACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
67320793 ACGTGAAAGCCAAATCAGCTATG
66 ACGTGAAAGCCAAATCAGCTATG
*
67320816 TCTTCGATCTGCTCCCCGCCTGGTACAGAGATACCAAATCATCTTGGATCTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCCCCGCCTGGTACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
67320881 ACGTGAAAGCCAAATCAGCTATG
66 ACGTGAAAGCCAAATCAGCTATG
*
67320904 TCTTCGATCTGCTCCCCGCCTGGTACAGAGATACCAAATCATCTTGGATCTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCCCCGCCTGGTACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
67320969 ACGTGAAAGCCAAATCAGCTATG
66 ACGTGAAAGCCAAATCAGCTATG
* * *
67320992 TCTTCGATCTACTCCCTGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCA
1 TCTTCGATCTGCTCCCCGCCTGGTACAGAGATGCCAAATCATCTTGGATCTGCTTCA
67321049 GCGAAGGTCA
Statistics
Matches: 309, Mismatches: 11, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
87 18 0.06
88 291 0.94
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (88 bp):
TCTTCGATCTGCTCCCCGCCTGGTACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
ACGTGAAAGCCAAATCAGCTATG
Found at i:67320805 original size:41 final size:41
Alignment explanation
Indices: 67320760--67320985 Score: 122
Period size: 41 Copynumber: 5.2 Consensus size: 41
67320750 GTACAGAGAT
67320760 GCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
1 GCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
* ** ** * *
67320801 GCCAAATCAGCTATGTCTTCGATCTGC-TCCCCGCCTGGTACA-GAGATA
1 GCCAAAT---C-A--TCTTGGATCTGCTTCAACG--T-AAACACGTGAAA
67320849 -CCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
1 GCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
* ** ** * *
67320889 GCCAAATCAGCTATGTCTTCGATCTGC-TCCCCGCCTGGTACA-GAGATA
1 GCCAAAT---C-A--TCTTGGATCTGCTTCAACG--T-AAACACGTGAAA
67320937 -CCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
1 GCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
67320977 GCCAAATCA
1 GCCAAATCA
67320986 GCTATGTCTT
Statistics
Matches: 133, Mismatches: 28, Indels: 48
0.64 0.13 0.23
Matches are distributed among these distances:
39 6 0.05
40 10 0.08
41 43 0.32
42 8 0.06
43 2 0.02
44 4 0.03
45 2 0.02
46 8 0.06
47 34 0.26
48 10 0.08
49 6 0.05
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (41 bp):
GCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
Found at i:67320853 original size:47 final size:47
Alignment explanation
Indices: 67320714--67320944 Score: 147
Period size: 47 Copynumber: 5.2 Consensus size: 47
67320704 CACGTGAAAG
*
67320714 CCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGGTACAGAGATG
1 CCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGGTACAGAGATA
* ** ** * *
67320761 CCAAAT---C-A--TCTTGGATCTGCTTCAACG--T-AAACACGTGAAA
1 CCAAATCAGCTATGTCTTCGATCTGC-TCCCCGCCTGGTACA-GAGATA
67320801 GCCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGGTACAGAGATA
1 -CCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGGTACAGAGATA
* ** ** * *
67320849 CCAAAT---C-A--TCTTGGATCTGCTTCAACG--T-AAACACGTGAAA
1 CCAAATCAGCTATGTCTTCGATCTGC-TCCCCGCCTGGTACA-GAGATA
67320889 GCCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGGTACAGAGATA
1 -CCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGGTACAGAGATA
67320937 CCAAATCA
1 CCAAATCA
67320945 TCTTGGATCT
Statistics
Matches: 131, Mismatches: 29, Indels: 48
0.63 0.14 0.23
Matches are distributed among these distances:
39 6 0.05
40 9 0.07
41 34 0.26
42 8 0.06
43 2 0.02
44 4 0.03
45 2 0.02
46 8 0.06
47 42 0.32
48 10 0.08
49 6 0.05
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (47 bp):
CCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGGTACAGAGATA
Found at i:67322919 original size:9 final size:9
Alignment explanation
Indices: 67322907--67322974 Score: 68
Period size: 9 Copynumber: 7.6 Consensus size: 9
67322897 CTTTTTGGCA
67322907 TTTTTTG-T
1 TTTTTTGTT
67322915 TTTTTTGTTT
1 TTTTTTG-TT
67322925 TTTTTTGTT
1 TTTTTTGTT
* *
67322934 GTTTTGGTT
1 TTTTTTGTT
*
67322943 TCTTCTT-TT
1 T-TTTTTGTT
*
67322952 TTTTGTGTT
1 TTTTTTGTT
67322961 TTTTTTGTT
1 TTTTTTGTT
67322970 TTTTT
1 TTTTT
67322975 ATTTATTTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
8 10 0.21
9 27 0.56
10 11 0.23
ACGTcount: A:0.00, C:0.03, G:0.13, T:0.84
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:67322921 original size:18 final size:18
Alignment explanation
Indices: 67322907--67322974 Score: 84
Period size: 18 Copynumber: 3.8 Consensus size: 18
67322897 CTTTTTGGCA
*
67322907 TTTTTTGTTTTTTTGTTT
1 TTTTTTGTTTTTTTGGTT
*
67322925 TTTTTTGTTGTTTTGGTT
1 TTTTTTGTTTTTTTGGTT
* *
67322943 TCTTCT-TTTTTTTGTGTT
1 TTTTTTGTTTTTTTG-GTT
67322961 TTTTTTGTTTTTTT
1 TTTTTTGTTTTTTT
67322975 ATTTATTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
17 7 0.17
18 27 0.66
19 7 0.17
ACGTcount: A:0.00, C:0.03, G:0.13, T:0.84
Consensus pattern (18 bp):
TTTTTTGTTTTTTTGGTT
Found at i:67325006 original size:21 final size:20
Alignment explanation
Indices: 67324978--67325017 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
67324968 ATGTGTATTT
67324978 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTGATAGATTA
*
67324998 TGAATGTTTGTTGATAGATT
1 TGAA-GTTTCTTGATAGATT
67325018 TACAAGCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.47
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTA
Found at i:67326415 original size:43 final size:43
Alignment explanation
Indices: 67326354--67326438 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
67326344 AAATTAAGAG
67326354 TTAATGTGTGAATAAACTTTATGTTAACTCATTGTTTGATGAT
1 TTAATGTGTGAATAAACTTTATGTTAACTCATTGTTTGATGAT
67326397 TTAATGTGTGAATAAACTTTATGTTAACTCATTGTTTGATGA
1 TTAATGTGTGAATAAACTTTATGTTAACTCATTGTTTGATGA
67326439 CATAAATGCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.31, C:0.07, G:0.16, T:0.46
Consensus pattern (43 bp):
TTAATGTGTGAATAAACTTTATGTTAACTCATTGTTTGATGAT
Found at i:67328760 original size:21 final size:21
Alignment explanation
Indices: 67328734--67328778 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
67328724 CAAAAGCAAT
67328734 CAAAACATGCCATTTAATACA
1 CAAAACATGCCATTTAATACA
* * *
67328755 CAAAACATGTCATTTCATTCA
1 CAAAACATGCCATTTAATACA
67328776 CAA
1 CAA
67328779 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.24, G:0.04, T:0.27
Consensus pattern (21 bp):
CAAAACATGCCATTTAATACA
Found at i:67332085 original size:21 final size:20
Alignment explanation
Indices: 67332057--67332095 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
67332047 ATGTGTATTT
67332057 TGAAGTTTCTTGATAGATTG
1 TGAAGTTTCTTGATAGATTG
*
67332077 TGAATGTTTGTTGATAGAT
1 TGAA-GTTTCTTGATAGAT
67332096 GTATAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.46
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTG
Found at i:67334077 original size:48 final size:49
Alignment explanation
Indices: 67334017--67334334 Score: 296
Period size: 48 Copynumber: 6.6 Consensus size: 49
67334007 GTAAATTGCT
* *
67334017 GATGCCACGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAAT-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATGGCC
**
67334065 GATGCCATGTCCCATTCATGGTCTTACACTGGCTCTCATA--ATATGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA-ATGGCC
* * * * * * * * *
67334113 AACAG-CATGTCCTAGACATGGTCTTAAACTAGCACACATATCGAT-GCG
1 GA-TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATGGCC
** *
67334161 GATGCCATGTCCCATTCATGGTCTTACACTGGCTCTCATA--ATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA-ATGGCC
* * * * * * *
67334209 GACAG-CATGTCCCAGACATGGTCTTAAACTAGCACACTTATCAAT-GCA
1 GA-TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATGGCC
*
67334257 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATGGCC
**
67334305 GACACCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
67334335 AGCACACATA
Statistics
Matches: 210, Mismatches: 47, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
46 1 0.00
47 6 0.03
48 197 0.94
49 5 0.02
50 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATGGCC
Found at i:67334194 original size:96 final size:96
Alignment explanation
Indices: 67334025--67334347 Score: 486
Period size: 96 Copynumber: 3.4 Consensus size: 96
67334015 CTGATGCCAC
* * * * * *
67334025 GTCCCAGACATGGTCTTACACTGGCTCTCATCTCAATGCCGATGCCATGTCCCATTCATGGTCTT
1 GTCCCAGACATGGTCTTAAACTAGCACACATATCAATGCAGATGCCATGTCCCATTCATGGTCTT
* *
67334090 ACACTGGCTCTCATAATATGGCCAACAGCAT
66 ACACTGGCTCTCATAATGTGGCCGACAGCAT
* * *
67334121 GTCCTAGACATGGTCTTAAACTAGCACACATATCGATGCGGATGCCATGTCCCATTCATGGTCTT
1 GTCCCAGACATGGTCTTAAACTAGCACACATATCAATGCAGATGCCATGTCCCATTCATGGTCTT
67334186 ACACTGGCTCTCATAATGTGGCCGACAGCAT
66 ACACTGGCTCTCATAATGTGGCCGACAGCAT
* **
67334217 GTCCCAGACATGGTCTTAAACTAGCACACTTATCAATGCAGATGCCATGTCCCAGACATGGTCTT
1 GTCCCAGACATGGTCTTAAACTAGCACACATATCAATGCAGATGCCATGTCCCATTCATGGTCTT
*
67334282 ACACTGGCTCTCAT-ATCGTGGCCGACACCAT
66 ACACTGGCTCTCATAAT-GTGGCCGACAGCAT
*
67334313 GTCCCAGACATGGTCTTACACTAGCACACATATCA
1 GTCCCAGACATGGTCTTAAACTAGCACACATATCA
67334348 CCCAATGTCA
Statistics
Matches: 207, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
95 2 0.01
96 205 0.99
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (96 bp):
GTCCCAGACATGGTCTTAAACTAGCACACATATCAATGCAGATGCCATGTCCCATTCATGGTCTT
ACACTGGCTCTCATAATGTGGCCGACAGCAT
Found at i:67341754 original size:48 final size:48
Alignment explanation
Indices: 67341683--67341930 Score: 318
Period size: 48 Copynumber: 5.2 Consensus size: 48
67341673 CACAGCTGTT
*
67341683 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATC
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
* * * * *
67341731 ATTATGTAAGCCAGTGAAAGACCATGTTTGGGACATGGCATTGGCATT
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
**
67341779 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTAGCATC
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
* * * * *
67341827 ATTAAGTGAGCTAGTGTAAGAACATGTCTGGGACAAGGCATCGGCATT
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
* ** * *
67341875 ATTATGAGAGCCAGTGTAAGACCATAACTGAGATATGGCATCGGCATC
1 ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
67341923 -TATATGTG
1 AT-TATGTG
67341931 TAAGATTTCT
Statistics
Matches: 170, Mismatches: 29, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
47 1 0.01
48 169 0.99
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
ATTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
Found at i:67347887 original size:48 final size:48
Alignment explanation
Indices: 67347827--67348013 Score: 275
Period size: 48 Copynumber: 3.9 Consensus size: 48
67347817 CACTGCTATT
*
67347827 ATTATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCATC
1 ATTATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATC
* * * *
67347875 ATTATGTCAGCCAGTATAAGACCATGTCTGGGATATGGCATCGGCATC
1 ATTATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATC
* *
67347923 ATTATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATT
1 ATTATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATC
** * *
67347971 ATTATAAGAGCCAGTGTAAGACCATATCTAGGATATGGCATCG
1 ATTATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
67348014 AAATTGATAT
Statistics
Matches: 123, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 123 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (48 bp):
ATTATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATC
Found at i:67350967 original size:48 final size:48
Alignment explanation
Indices: 67350913--67351135 Score: 171
Period size: 48 Copynumber: 4.6 Consensus size: 48
67350903 TGCCACGTCT
* * *
67350913 CAGACATGGTCTTACACTGGCTTACATGTCGAAGCTGATGACATGTCC
1 CAGACATGGTCTTACACTGGCTCACATATCGAAGCTAATGACATGTCC
* * * *
67350961 CAGACATGGTCTTACACTAGCACACATATCGATGCTAATGCCATGTCC
1 CAGACATGGTCTTACACTGGCTCACATATCGAAGCTAATGACATGTCC
* * * * ** * *
67351009 CAGACCTGGTCTTACACTGGCTCTCATAAC-ATTGCCGATGCCATGTTC
1 CAGACATGGTCTTACACTGGCTCACATATCGA-AGCTAATGACATGTCC
* * * * ** ** *
67351057 CAAACATGGTCTTATATTGGCTCTCATATCGTGGCCGA-CACCATGTCC
1 CAGACATGGTCTTACACTGGCTCACATATCGAAGCTAATGA-CATGTCC
* * *
67351105 CAGGCATGGTCTTACACTAGCACACATATCG
1 CAGACATGGTCTTACACTGGCTCACATATCG
67351136 CCCAATGTCA
Statistics
Matches: 140, Mismatches: 32, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
47 1 0.01
48 139 0.99
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
CAGACATGGTCTTACACTGGCTCACATATCGAAGCTAATGACATGTCC
Found at i:67351085 original size:96 final size:96
Alignment explanation
Indices: 67350913--67351122 Score: 210
Period size: 96 Copynumber: 2.2 Consensus size: 96
67350903 TGCCACGTCT
** * * *
67350913 CAGACATGGTCTTACACTGGCT-TACATGTCGA-AGCTGATGACATGTCCCAGACATGGTCTTAC
1 CAGACATGGTCTTACACTGGCTCT-CATAAC-ATTGCCGATGACATGTCCCAAACATGGTCTTAC
* **
67350976 ACTAGCACACATATCGAT-GCTAATGCCATGTCC
64 ACTAGCACACATATCG-TGGCCAACACCATGTCC
* * * * *
67351009 CAGACCTGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCCAAACATGGTCTTATAT
1 CAGACATGGTCTTACACTGGCTCTCATAACATTGCCGATGACATGTCCCAAACATGGTCTTACAC
* * * *
67351074 TGGCTCTCATATCGTGGCCGACACCATGTCC
66 TAGCACACATATCGTGGCCAACACCATGTCC
*
67351105 CAGGCATGGTCTTACACT
1 CAGACATGGTCTTACACT
67351123 AGCACACATA
Statistics
Matches: 92, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
95 2 0.02
96 89 0.97
97 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (96 bp):
CAGACATGGTCTTACACTGGCTCTCATAACATTGCCGATGACATGTCCCAAACATGGTCTTACAC
TAGCACACATATCGTGGCCAACACCATGTCC
Found at i:67351900 original size:21 final size:21
Alignment explanation
Indices: 67351876--67351916 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
67351866 TTCACATAGG
67351876 CGTGTGCCTTGGACACACGGC
1 CGTGTGCCTTGGACACACGGC
* * *
67351897 CGTGTTCCTTTGCCACACGG
1 CGTGTGCCTTGGACACACGG
67351917 GCATATGAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.34, G:0.29, T:0.24
Consensus pattern (21 bp):
CGTGTGCCTTGGACACACGGC
Found at i:67354438 original size:15 final size:13
Alignment explanation
Indices: 67354407--67354431 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67354397 TATTTTAAAA
67354407 TTATTTTTTGTGT
1 TTATTTTTTGTGT
67354420 TTATTTTTTGTG
1 TTATTTTTTGTG
67354432 AATTTATGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.16, T:0.76
Consensus pattern (13 bp):
TTATTTTTTGTGT
Found at i:67357808 original size:40 final size:40
Alignment explanation
Indices: 67357729--67357886 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
67357719 TTCGAATGAT
* * * *
67357729 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
67357769 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
67357809 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
67357849 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
67357887 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:67357907 original size:80 final size:80
Alignment explanation
Indices: 67357729--67357916 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
67357719 TTCGAATGAT
* *
67357729 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
67357794 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
67357809 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
67357870 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
67357890 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
67357917 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:67361589 original size:47 final size:45
Alignment explanation
Indices: 67361516--67361686 Score: 177
Period size: 47 Copynumber: 3.7 Consensus size: 45
67361506 TTATTAGTGT
67361516 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGAGA
* * *
67361562 GCCAGTGTAAGACCATGCCTGGGACATGGCATCGG--TATTGA-GACGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-ATGA-GA
* * *
67361608 GTGCTAGTGTAAGACATTTCTGGGACATGCATCGGCCTCGATGATGATA
1 --GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTATGAGA
*
67361657 GCTAGTGTAAAACATGTCTGGGACATGCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCAT
67361687 TAGCTAAGAG
Statistics
Matches: 103, Mismatches: 11, Indels: 21
0.76 0.08 0.16
Matches are distributed among these distances:
45 5 0.05
46 21 0.20
47 53 0.51
48 18 0.17
49 2 0.02
50 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGAGA
Found at i:67368308 original size:68 final size:66
Alignment explanation
Indices: 67368233--67368380 Score: 165
Period size: 67 Copynumber: 2.2 Consensus size: 66
67368223 CATCATGTGT
* * * *
67368233 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGATCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACG-G-CA-TAT-ACGTAGCTAGATCGCATGCGTGATACTAGTGAAGGACACCA
67368296 TGTAG
62 TGTAG
* * * *
67368301 ACAAGAGAGCTACGGGATATACGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGGCATATACGTAGCTAGATCGCATGCGTGATACTA-GTGAAGGACACCATGT
67368366 AG
65 AG
67368368 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
67368381 AAGATAAACT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 23 0.33
65 3 0.04
66 3 0.04
67 26 0.38
68 14 0.20
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGGCATATACGTAGCTAGATCGCATGCGTGATACTAGTGAAGGACACCATGTA
G
Found at i:67372494 original size:47 final size:47
Alignment explanation
Indices: 67372440--67372745 Score: 180
Period size: 47 Copynumber: 6.4 Consensus size: 47
67372430 TACTGTAAAA
*
67372440 CATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGAC
1 CATGTCTGGGACATGCATCGGCCACGATGA-GAGAGCCAGTGTAAGAC
* * * *
67372487 CATGTCTGGGACATGGCATCGG-TATTGA-GACGAGTGCTAGTGTAAGA-
1 CATGTCTGGGACAT-GCATCGGCCA-CGATGA-GAGAGCCAGTGTAAGAC
* * * * * * *
67372534 CATTTTTGGGACATGCATCAGCCTCGATGATGATAGCCTGTGTAA-AA
1 CATGTCTGGGACATGCATCGGCCACGATGA-GAGAGCCAGTGTAAGAC
* * * * * *
67372581 CATGTCTGGGACATGCATCAGCTA--A-GAGTTGTGCTAGTATAAGAC
1 CATGTCTGGGACATGCATCGGCCACGATGAG-AGAGCCAGTGTAAGAC
* * * *
67372626 CATGTCTGGGATATGACATCAG-CACGTATATACGAGAGCTAGTGTAAGAC
1 CATGTCTGGGACATG-CATCGGCCACG-AT-GA-GAGAGCCAGTGTAAGAC
* * * * *
67372676 CATGTCTAGGACATGGCATTGGCCTCGATGACGATAGCCAGTGTAAAAC
1 CATGTCTGGGACAT-GCATCGGCCACGATGA-GAGAGCCAGTGTAAGAC
*
67372725 CATGTCTAGGACATGGCATCG
1 CATGTCTGGGACAT-GCATCG
67372746 ACAACTTATT
Statistics
Matches: 198, Mismatches: 44, Indels: 32
0.72 0.16 0.12
Matches are distributed among these distances:
43 1 0.01
44 9 0.05
45 17 0.09
46 15 0.08
47 59 0.30
48 23 0.12
49 37 0.19
50 32 0.16
51 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (47 bp):
CATGTCTGGGACATGCATCGGCCACGATGAGAGAGCCAGTGTAAGAC
Found at i:67372587 original size:94 final size:93
Alignment explanation
Indices: 67372426--67372599 Score: 233
Period size: 94 Copynumber: 1.9 Consensus size: 93
67372416 GGTTATTTGT
* * *
67372426 GTGCTACTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GTGCTACTGTAAAACATGTCTGGGACATGCATCAGCCACATGATGAGAGCCAGTGTAAGAACATG
67372491 TCTGGGACATGGCATCGGTATTGAGACGA
66 TCTGGGACAT-GCATCGGTATTGAGACGA
* * * * * * *
67372520 GTGCTAGTGTAAGACATTTTTGGGACATGCATCAGCCTCGATGATGATAGCCTGTGTAA-AACAT
1 GTGCTACTGTAAAACATGTCTGGGACATGCATCAGCCAC-ATGATGAGAGCCAGTGTAAGAACAT
67372584 GTCTGGGACATGCATC
65 GTCTGGGACATGCATC
67372600 AGCTAAGAGT
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
93 5 0.07
94 48 0.70
95 16 0.23
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (93 bp):
GTGCTACTGTAAAACATGTCTGGGACATGCATCAGCCACATGATGAGAGCCAGTGTAAGAACATG
TCTGGGACATGCATCGGTATTGAGACGA
Found at i:67376221 original size:22 final size:20
Alignment explanation
Indices: 67376182--67376222 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
67376172 TTTTTCTCGA
*
67376182 TTTTTCCTTTCTTTTCTTTG
1 TTTTTCCTCTCTTTTCTTTG
67376202 TTTTTCTCTCTCTCTTTCTTT
1 TTTTTC-CTCTCT-TTTCTTT
67376223 CTTTCATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 5 0.28
22 7 0.39
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTTTCCTCTCTTTTCTTTG
Found at i:67376236 original size:3 final size:3
Alignment explanation
Indices: 67376228--67376252 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
67376218 TCTTTCTTTC
67376228 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
67376253 GTTGTTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:67384373 original size:71 final size:71
Alignment explanation
Indices: 67384257--67384404 Score: 206
Period size: 71 Copynumber: 2.1 Consensus size: 71
67384247 ATTCCGATGA
* * * *
67384257 GAATAAACATATGACAAGGTCAAACAAAAGTTTATTTAACTATACTACTTGTCCATCTAAAAATA
1 GAATAGACATATGACAAGGCCAAACAAAAGCTTATTTAACTATACTACTTATCCATCTAAAAATA
*
67384322 GTGTGC
66 GTATGC
* * * *
67384328 GAATAGACATATGATAGGGCCAAACAAAAGCTTATTTGACTATACTACTTATCTATCTAAAAATA
1 GAATAGACATATGACAAGGCCAAACAAAAGCTTATTTAACTATACTACTTATCCATCTAAAAATA
*
67384393 GTATGT
66 GTATGC
67384399 GAATAG
1 GAATAG
67384405 TCGATGACTC
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (71 bp):
GAATAGACATATGACAAGGCCAAACAAAAGCTTATTTAACTATACTACTTATCCATCTAAAAATA
GTATGC
Found at i:67392007 original size:48 final size:48
Alignment explanation
Indices: 67391933--67392065 Score: 194
Period size: 48 Copynumber: 2.8 Consensus size: 48
67391923 TAGGGTTATG
*
67391933 TATGATCCCATGTAAGACCATGTCTGGCACATGGCATTGGCATCGATA
1 TATGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
67391981 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
1 TATGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
** * *
67392029 TATGATTTCGTGTAAGACCATGTCTGGGGCATGGCAT
1 TATGATCCCATGTAAGACCATGTCTGGGACATGGCAT
67392066 CGATATGAGC
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 74 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (48 bp):
TATGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:67392017 original size:42 final size:42
Alignment explanation
Indices: 67391970--67392145 Score: 106
Period size: 42 Copynumber: 4.0 Consensus size: 42
67391960 CACATGGCAT
67391970 TGGCATCGATATGTGATCCCATGTAAGACCATATCTGGGATATGGCA
1 TGGCATCGATATGTGATCCCATGTAAGACCATATCTGGG--AT---A
* ** * * **
67392017 TTGGCATCGATATATGATTTCGTGTAAGACCATGTCTGGGGCA
1 -TGGCATCGATATGTGATCCCATGTAAGACCATATCTGGGATA
* * * *
67392060 TGGCATCGATA--TGAGCCATCGTGTAAGACTATAGT-TGGGCTA
1 TGGCATCGATATGTGATCC--CATGTAAGACCATA-TCTGGGATA
* * ** *
67392102 TGGCTTCGATCTGTGATCTGATATAAGACCATATCTGGGATA
1 TGGCATCGATATGTGATCCCATGTAAGACCATATCTGGGATA
67392144 TG
1 TG
67392146 CTATTGGCAT
Statistics
Matches: 99, Mismatches: 23, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
40 3 0.03
41 1 0.01
42 55 0.56
43 2 0.02
44 4 0.04
48 34 0.34
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
TGGCATCGATATGTGATCCCATGTAAGACCATATCTGGGATA
Found at i:67394524 original size:64 final size:64
Alignment explanation
Indices: 67394451--67394661 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
67394441 CTGGGCCAGA
*
67394451 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
67394515 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
67394577 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
67394588 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
67394652 GCCCATTTCA
1 GCCCATTTCA
67394662 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:67394663 original size:137 final size:137
Alignment explanation
Indices: 67394417--67394703 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
67394407 TATTGGGCCT
**
67394417 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
67394482 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
67394547 CATATGC
131 CATATGC
67394554 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
67394619 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
67394684 CATATGC
131 CATATGC
67394691 AAGCCCATTTGGG
1 AAGCCCATTTGGG
67394704 GAGACTACTC
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:67396546 original size:26 final size:26
Alignment explanation
Indices: 67396480--67396617 Score: 231
Period size: 26 Copynumber: 5.2 Consensus size: 26
67396470 CATGAAATTC
*
67396480 TTATCATGAAACATTTACCTAACCCACA
1 TTATCATGAAACATTTACCTAA-CC-TA
*
67396508 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
67396534 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
67396560 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
67396586 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
67396612 TTATCA
1 TTATCA
67396618 ATTTGTATCA
Statistics
Matches: 107, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
26 83 0.78
27 2 0.02
28 22 0.21
ACGTcount: A:0.38, C:0.25, G:0.04, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:67398554 original size:25 final size:26
Alignment explanation
Indices: 67398504--67398555 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
67398494 TGTATCCTAG
*
67398504 TAAATATAAAAAAAAAAATACTTATT
1 TAAATATAAAAAAAAAAATACATATT
* *
67398530 TAAATATTAAAAAAAACA-ACATATT
1 TAAATATAAAAAAAAAAATACATATT
67398555 T
1 T
67398556 CTTTAATTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (26 bp):
TAAATATAAAAAAAAAAATACATATT
Found at i:67398857 original size:51 final size:51
Alignment explanation
Indices: 67398749--67398866 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 51
67398739 ACTTTCCCCA
* *
67398749 AAAAATTTTACTTCACTCTAAACCTCTAAAACTTTTTTTTATTTTCTCTCC
1 AAAACTTTTACTTCCCTCTAAACCTCTAAAACTTTTTTTTATTTTCTCTCC
* *** * *
67398800 GAAACTTTTACTTCCCT-TAAACCTCTAATTTTTTTCCTTTTGTTTTCTC-CT
1 AAAACTTTTACTTCCCTCTAAACCTCTAAAACTTTT--TTTTATTTTCTCTCC
67398851 AAAACTTTTACTTCCC
1 AAAACTTTTACTTCCC
67398867 CCAGACTTCA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
50 15 0.27
51 30 0.54
52 11 0.20
ACGTcount: A:0.25, C:0.25, G:0.02, T:0.48
Consensus pattern (51 bp):
AAAACTTTTACTTCCCTCTAAACCTCTAAAACTTTTTTTTATTTTCTCTCC
Found at i:67400704 original size:63 final size:64
Alignment explanation
Indices: 67400603--67400729 Score: 229
Period size: 63 Copynumber: 2.0 Consensus size: 64
67400593 TATTTAAGAA
*
67400603 AATTGTGTGAGAAATTATTTTTATCTTAAAACTTTATTTATTCTAATT-AAAAAACATAATTAT
1 AATTGTGTGAGAAATTATTTTTATCTTAAAACTCTATTTATTCTAATTAAAAAAACATAATTAT
*
67400666 AATTGTGTGAGAAATTATTTTTATCTTAAAACTCTATTTATTCTAATTAAAAAAATATAATTAT
1 AATTGTGTGAGAAATTATTTTTATCTTAAAACTCTATTTATTCTAATTAAAAAAACATAATTAT
67400730 GGAGTTGATT
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
63 47 0.77
64 14 0.23
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (64 bp):
AATTGTGTGAGAAATTATTTTTATCTTAAAACTCTATTTATTCTAATTAAAAAAACATAATTAT
Found at i:67402022 original size:11 final size:11
Alignment explanation
Indices: 67402006--67402045 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
67401996 ATGAGCTGTA
67402006 TTTATAAGATG
1 TTTATAAGATG
*
67402017 TTTAT-AG-TA
1 TTTATAAGATG
67402026 TTTATAAGATG
1 TTTATAAGATG
67402037 TTTATAAGA
1 TTTATAAGA
67402046 CTCTCACATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 6 0.24
10 4 0.16
11 15 0.60
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (11 bp):
TTTATAAGATG
Found at i:67402028 original size:20 final size:20
Alignment explanation
Indices: 67402003--67402042 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
67401993 AGAATGAGCT
67402003 GTATTTATAAGATGTTTATA
1 GTATTTATAAGATGTTTATA
67402023 GTATTTATAAGATGTTTATA
1 GTATTTATAAGATGTTTATA
67402043 AGACTCTCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (20 bp):
GTATTTATAAGATGTTTATA
Found at i:67406428 original size:48 final size:48
Alignment explanation
Indices: 67406356--67406674 Score: 279
Period size: 46 Copynumber: 6.8 Consensus size: 48
67406346 TATCGATGCT
* * * * *
67406356 GATGCCATATCCCAGATATGGTCTTACACTGGCTCTCATATATTTGTGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATATATTCGTGCC
* * *
67406406 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATCCGTACC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATTCGTGCC
* * *
67406454 GATGCATGTCCCAGACATGTCTTACACTAG----CACAT-CTCGTAGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATTCGT-GCC
* * *
67406498 GATGCATGTCCCAGACATGTCTTACACTAGCT-T-ACAT-TTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATTCG-TGCC
* * * *
67406544 GATGCATGTCCTAGACATGTCTTACACTAGCTCTC--GT-CTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATTC-GTGCC
* *
67406590 GATGCATGTCCCAGACATGTCTTATACTAGCATTTCATA-A-T-GTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-TCTCATATATTCGT-GCC
* *
67406637 GATGCATGTCCTAGACATGTCTTACACTAGCTCACATA
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATA
67406675 ATAACAGTGT
Statistics
Matches: 225, Mismatches: 31, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
43 3 0.01
44 35 0.16
46 79 0.35
47 36 0.16
48 56 0.25
49 12 0.05
50 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATTCGTGCC
Done.