Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 229 of 378
Found at i:67730751 original size:13 final size:13
Alignment explanation
Indices: 67730733--67730758 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67730723 CGAAATCTTA
67730733 ATTATAATAATTT
1 ATTATAATAATTT
67730746 ATTATAATAATTT
1 ATTATAATAATTT
67730759 TGGTAAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTATAATAATTT
Found at i:67732037 original size:63 final size:62
Alignment explanation
Indices: 67731944--67732093 Score: 194
Period size: 63 Copynumber: 2.4 Consensus size: 62
67731934 TTTTACTACA
* * * *
67731944 ATATTGAGTGGCTTGGCCATAACT-TCATTGAGTGGCTTGTCCATAATGTGCAGTTTGTCTGC
1 ATATTGAGTGGCTTGGCCACAA-TGTCATTGAGTGGCTTGACCACAATGTGCAGCTTGTCTGC
* * * *
67732006 GATATTGAGTGGCTTGGGCACAATGTTATTGAGTGGTTTGACCACAATGTGTAGCTTGTCTGC
1 -ATATTGAGTGGCTTGGCCACAATGTCATTGAGTGGCTTGACCACAATGTGCAGCTTGTCTGC
67732069 ATTATTGAGTGGCTTGGCCACAATG
1 A-TATTGAGTGGCTTGGCCACAATG
67732094 AGGAGTGTTA
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
62 2 0.03
63 74 0.97
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.35
Consensus pattern (62 bp):
ATATTGAGTGGCTTGGCCACAATGTCATTGAGTGGCTTGACCACAATGTGCAGCTTGTCTGC
Found at i:67732040 original size:24 final size:24
Alignment explanation
Indices: 67732008--67732055 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
67731998 TTGTCTGCGA
**
67732008 TATTGAGTGGCTTGGGCACAATGT
1 TATTGAGTGGCTTGACCACAATGT
*
67732032 TATTGAGTGGTTTGACCACAATGT
1 TATTGAGTGGCTTGACCACAATGT
67732056 GTAGCTTGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.12, G:0.29, T:0.35
Consensus pattern (24 bp):
TATTGAGTGGCTTGACCACAATGT
Found at i:67734692 original size:37 final size:37
Alignment explanation
Indices: 67734644--67734751 Score: 103
Period size: 38 Copynumber: 2.9 Consensus size: 37
67734634 AAAATGGAAT
*
67734644 ACTGAATATACTAAATGTGCTCAAAAGAGCAATA-TC
1 ACTGATTATACTAAATGTGCTCAAAAGAGCAATATTC
* * * **
67734680 TATTGATTATACTGAAACT-TTCTCAAACGAGCGGTATTC
1 -ACTGATTATACT-AAA-TGTGCTCAAAAGAGCAATATTC
* *
67734719 ACTGATTATACAAAATGGGCTCAAAAGAGCAAT
1 ACTGATTATACTAAATGTGCTCAAAAGAGCAAT
67734752 GCCTACATGC
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
36 1 0.02
37 24 0.44
38 26 0.48
39 3 0.06
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.28
Consensus pattern (37 bp):
ACTGATTATACTAAATGTGCTCAAAAGAGCAATATTC
Found at i:67734974 original size:112 final size:111
Alignment explanation
Indices: 67734763--67735006 Score: 317
Period size: 112 Copynumber: 2.2 Consensus size: 111
67734753 CCTACATGCA
* * * * **
67734763 CAAACAAGCAATATCTACTGGATCTACTGAACATGCTCAAAAGAGCAATGTTTGTTGATTATATT
1 CAAACGAGAAATATCTACTGAATCTACTGAACATGCTCAAAAGAGAAATGTTTACTGATTATATT
* *
67734828 GAAAGTTGCTCAAACGAGTGATATCCACTAATTATACTGAATGGGCT
66 GAAAATTGCTCAAACGAGTGATATCCACTAATTATACT-AATAGGCT
* * * * * *
67734875 CAAATGAGAAATATCTACTTAATGTACTGAACGTTCTTAAAAGAGAAATGTTTACTGATTATATT
1 CAAACGAGAAATATCTACTGAATCTACTGAACATGCTCAAAAGAGAAATGTTTACTGATTATATT
* *
67734940 GAAAATTGCTTAAACGAGTGATATCCACTGATTATACTAATAGGCT
66 GAAAATTGCTCAAACGAGTGATATCCACTAATTATACTAATAGGCT
**
67734986 CAAACGAGTGATATCTACTGA
1 CAAACGAGAAATATCTACTGA
67735007 TTATATGGAA
Statistics
Matches: 112, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
111 24 0.21
112 88 0.79
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (111 bp):
CAAACGAGAAATATCTACTGAATCTACTGAACATGCTCAAAAGAGAAATGTTTACTGATTATATT
GAAAATTGCTCAAACGAGTGATATCCACTAATTATACTAATAGGCT
Found at i:67737888 original size:40 final size:40
Alignment explanation
Indices: 67737830--67738098 Score: 292
Period size: 40 Copynumber: 6.5 Consensus size: 40
67737820 TAACCACTCG
* * * * *
67737830 CAAA-GCCATCGGGCCTTAGCCCGG-ATATGGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
67737869 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
67737909 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
67737949 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
67737989 CAAATGCCTTCGGGATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
1 C-AA----------ATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
67738040 CAAATGCCTTCGGGACTTAACCCGGAATTAATCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
67738080 CAAATGTCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
67738099 ACCCCGTTAT
Statistics
Matches: 207, Mismatches: 10, Indels: 25
0.86 0.04 0.10
Matches are distributed among these distances:
39 4 0.02
40 159 0.77
41 4 0.02
50 2 0.01
51 38 0.18
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:67737934 original size:80 final size:80
Alignment explanation
Indices: 67737800--67738098 Score: 270
Period size: 80 Copynumber: 3.6 Consensus size: 80
67737790 ACCCAATTAT
* *** * * *
67737800 CTTCGGGATTTAG-CCGGATATAACCACTCG--CAAA-GCCATCGGGCCTTAGCCCGG-ATATGG
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
*
67737860 TCACTAGCACAAATGC
65 TAACTAGCACAAATGC
67737876 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
*
67737941 AACTCGCACAAATGC
66 AACTAGCACAAATGC
* *
67737956 CTTCGGGACTTAACCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGATGCCTTCGGGACTTAA
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCAC-AA----------ATGCCTTCGGGACTTAG
*
67738020 CCCGGAATTAGTAACTCGCACAAATGC
54 CCCGGAATTAGTAACTAGCACAAATGC
* * * * *
67738047 CTTCGGGACTTAACCCGGA-ATTAATCACTAGCACAAATGTCTTCGGGACTTA
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTA
67738099 ACCCCGTTAT
Statistics
Matches: 191, Mismatches: 15, Indels: 30
0.81 0.06 0.13
Matches are distributed among these distances:
76 12 0.06
77 14 0.07
79 5 0.03
80 80 0.42
81 4 0.02
90 2 0.01
91 74 0.39
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACTAGCACAAATGC
Found at i:67738028 original size:51 final size:51
Alignment explanation
Indices: 67737952--67738054 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
67737942 ACTCGCACAA
67737952 ATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGG
1 ATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGG
67738003 ATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGG
1 ATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGG
67738054 A
1 A
67738055 CTTAACCCGG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (51 bp):
ATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGG
Found at i:67738067 original size:91 final size:91
Alignment explanation
Indices: 67737912--67738094 Score: 321
Period size: 91 Copynumber: 2.0 Consensus size: 91
67737902 ACTCGCACAA
*
67737912 ATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
1 ATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
* *
67737977 TAGTAACTCGCACAAATGCCTTCGGG
66 TAATAACTAGCACAAATGCCTTCGGG
67738003 ATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
1 ATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
* *
67738068 TAATCACTAGCACAAATGTCTTCGGG
66 TAATAACTAGCACAAATGCCTTCGGG
67738094 A
1 A
67738095 CTTAACCCCG
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 87 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (91 bp):
ATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
TAATAACTAGCACAAATGCCTTCGGG
Found at i:67740115 original size:24 final size:24
Alignment explanation
Indices: 67740088--67740135 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
67740078 AACTTAAGAT
67740088 AGTGTGATATTGATTTATCCAATC
1 AGTGTGATATTGATTTATCCAATC
67740112 AGTGTGATATTGATTTATCCAATC
1 AGTGTGATATTGATTTATCCAATC
67740136 CAACCCATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (24 bp):
AGTGTGATATTGATTTATCCAATC
Found at i:67751801 original size:18 final size:20
Alignment explanation
Indices: 67751758--67751811 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
67751748 TTTAAGGGCC
67751758 ACACACCCGTGTGGCTTAGG
1 ACACACCCGTGTGGCTTAGG
* *
67751778 ACACACCTGTGTGGCTTGGG
1 ACACACCCGTGTGGCTTAGG
*
67751798 ACACGCCCGTGTGG
1 ACACACCCGTGTGG
67751812 GCAGGCCGTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (20 bp):
ACACACCCGTGTGGCTTAGG
Found at i:67752164 original size:42 final size:42
Alignment explanation
Indices: 67752085--67752166 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
67752075 GGTGTTGGGG
*
67752085 ACACACGGCCAGAACACACGCCCATGGGGCTAGCCGTGTGTC
1 ACACACGGCCAGAACACACGCCCATGGGGCTACCCGTGTGTC
* * * *
67752127 ACACACGGCCTAG-ACACACTCCCGTGTGTCTACCCGTGTG
1 ACACACGGCC-AGAACACACGCCCATGGGGCTACCCGTGTG
67752167 GACAAGAACA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.16
Consensus pattern (42 bp):
ACACACGGCCAGAACACACGCCCATGGGGCTACCCGTGTGTC
Found at i:67752954 original size:42 final size:42
Alignment explanation
Indices: 67752907--67753016 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 42
67752897 AATCATACCA
* * * **
67752907 ATGCCATATCCTAGATACGGTCTTACATAGGAT-CTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACA-AGAATCCTCATATCG
* * *
67752949 ATGCCAATAGCCCAGCTATGGTCTTACACGAATCCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACAAGAATCCTCATATCG
67752992 ATGCCATATCCCAGATATGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
67753017 TGCGTAATCT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 26 0.46
43 30 0.54
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACAAGAATCCTCATATCG
Found at i:67762356 original size:20 final size:20
Alignment explanation
Indices: 67762307--67762358 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
67762297 TTTAAGGGCC
* *
67762307 ACATGCCCATGTGGCTTGGG
1 ACATGCCCGTGTGGCTTAGG
67762327 ACATGCCCGTGTGGCTTAGG
1 ACATGCCCGTGTGGCTTAGG
*
67762347 ACATGTCCGTGT
1 ACATGCCCGTGT
67762359 AGGCAGGCCG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.15, C:0.25, G:0.33, T:0.27
Consensus pattern (20 bp):
ACATGCCCGTGTGGCTTAGG
Found at i:67764025 original size:27 final size:27
Alignment explanation
Indices: 67763987--67764040 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
67763977 TAAATTACAC
67763987 AATATACGTTATCATCTTATGCATATA
1 AATATACGTTATCATCTTATGCATATA
*
67764014 AATATATGTTATCATCTTATGCATATA
1 AATATACGTTATCATCTTATGCATATA
67764041 TAATCATAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (27 bp):
AATATACGTTATCATCTTATGCATATA
Found at i:67764596 original size:8 final size:8
Alignment explanation
Indices: 67764576--67764609 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
67764566 TTTTAAAATT
67764576 ATAATA-A
1 ATAATATA
*
67764583 ATAATATT
1 ATAATATA
67764591 ATAATATA
1 ATAATATA
67764599 ATAATATA
1 ATAATATA
67764607 ATA
1 ATA
67764610 TAATGAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 6 0.25
8 18 0.75
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATAATATA
Found at i:67764601 original size:13 final size:13
Alignment explanation
Indices: 67764573--67764613 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
67764563 AATTTTTAAA
67764573 ATTATAATAAATAAT
1 ATTATAAT--ATAAT
67764588 ATTATAATATAAT
1 ATTATAATATAAT
*
67764601 AATATAATATAAT
1 ATTATAATATAAT
67764614 GAACAATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 17 0.68
15 8 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
ATTATAATATAAT
Found at i:67764622 original size:33 final size:33
Alignment explanation
Indices: 67764575--67764648 Score: 80
Period size: 33 Copynumber: 2.2 Consensus size: 33
67764565 TTTTTAAAAT
* * *
67764575 TATAATAAATAATATTATAATATAATAATAT-A-A
1 TATAATGAACAATA-TAT-ATATAATAAAATGATA
*
67764608 TATAATGAACAATATATGTATAATAAAATGATA
1 TATAATGAACAATATATATATAATAAAATGATA
67764641 TATAATGA
1 TATAATGA
67764649 GATGTATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
31 10 0.29
32 4 0.11
33 21 0.60
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.36
Consensus pattern (33 bp):
TATAATGAACAATATATATATAATAAAATGATA
Found at i:67764749 original size:17 final size:17
Alignment explanation
Indices: 67764727--67764765 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
67764717 TAGTATGTGT
*
67764727 AATAATTTTTATA-TATA
1 AATAATATTTATAGTA-A
67764744 AATAATATTTATAGTAA
1 AATAATATTTATAGTAA
67764761 AATAA
1 AATAA
67764766 ATACTGTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
AATAATATTTATAGTAA
Found at i:67768053 original size:40 final size:40
Alignment explanation
Indices: 67767998--67768223 Score: 355
Period size: 40 Copynumber: 5.7 Consensus size: 40
67767988 GATGATAACG
* * * *
67767998 GGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
67768038 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTAC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
67768078 GGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTTC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
67768118 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
67768158 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT-C
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
*
67768198 GGGCTAAGTCCCGAAGGCATTTGTGC
1 GGGTTAAGTCCCGAAGGCATTTGTGC
67768224 TAGTGACCAT
Statistics
Matches: 175, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 172 0.98
41 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:67768241 original size:40 final size:40
Alignment explanation
Indices: 67768002--67768251 Score: 342
Period size: 40 Copynumber: 6.2 Consensus size: 40
67767992 ATAACGGGGT
* * * * *
67768002 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
67768042 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTACGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
67768082 TAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTTCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
67768122 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
67768162 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT-CGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
* * *
67768202 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
*
67768242 TAAGGCCCGA
1 TAAGTCCCGA
67768252 TGGCTTTACG
Statistics
Matches: 193, Mismatches: 14, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
38 2 0.01
39 1 0.01
40 187 0.97
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:67776352 original size:40 final size:40
Alignment explanation
Indices: 67776291--67776516 Score: 319
Period size: 40 Copynumber: 5.7 Consensus size: 40
67776281 GATGATAACG
* * * *
67776291 GGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
** *
67776331 GGGTTAAGTCCTAAAGGCATTTGTGCGAGTTACTAATTCT
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
67776371 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTTC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
67776411 GGGTTAAGTCCCGAAGGCATTAGTGCGAGTTACTAATTTC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
67776451 GGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
67776491 GGGCTAAGTCCCGAAGGCATTTGTGC
1 GGGTTAAGTCCCGAAGGCATTTGTGC
67776517 TAGTGACCAT
Statistics
Matches: 168, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 2 0.01
40 166 0.99
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.31
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:67776529 original size:40 final size:40
Alignment explanation
Indices: 67776295--67776552 Score: 306
Period size: 40 Copynumber: 6.5 Consensus size: 40
67776285 ATAACGGGGT
* * * * *
67776295 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
** * *
67776335 TAAGTCCTAAAGGCATTTGTGCGAGTTACTAATTCTGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
67776375 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
67776415 TAAGTCCCGAAGGCATTAGTGCGAGTTACTAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
67776455 TAAGTTCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
67776495 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* *
67776535 TAAGGCCCGATGGC-TTTG
1 TAAGTCCCGAAGGCATTTG
67776553 CGAGTGGTTA
Statistics
Matches: 195, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
39 6 0.03
40 189 0.97
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:67778193 original size:44 final size:43
Alignment explanation
Indices: 67778143--67778651 Score: 511
Period size: 44 Copynumber: 11.7 Consensus size: 43
67778133 CATTTTTCAG
*
67778143 TCTGCTCTCTGACAATACAGAGACGCCAAATCCACTA-CTTTCAA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCCA-TATC-TTCGA
* *
67778187 TCTGCTCTCTGACAATACAGAGACACCAAATCTATCATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCCAT-ATCTTCGA
* * * *
67778231 TCTGCTCTCT-ATAAATACAGAGAAGCCAAATCTGATATCGTCGA
1 TCTGCTCTCTGA-CAATACAGAGACGCCAAATC-CATATCTTCGA
* * * *
67778275 TCTACTCTCCGACAATACAAAGACGCCAAATCTGATATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATC-CATATCTTCGA
* ** *
67778319 TCTGCTCTCTGACAATATAGAGATTCCAAATCTGC-TATTTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATC--CATATCTTCGA
67778363 TCTGCTCTCTGACAATACAGAGACGCCAAAT-CAGCTATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCCA--TATCTTCGA
* *
67778407 TTTGCTCTCTGACAATACAGAGACGCCAAATCCGCTATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCC-ATATCTTCGA
*
67778451 TCTGTTCTCTGACAATACAGAGACGCCAAAT-CAGCTATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCCA--TATCTTCGA
* *
67778495 TCTGCTCTCTGATAATACAGAGACTCCAAAT-C---T-TT-GA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCCATATCTTCGA
* ** * *
67778532 TCTGCTTTCT-ATCAATACAGAGAAACCAAATCTGATGTCTTCGA
1 TCTGCTCTCTGA-CAATACAGAGACGCCAAATC-CATATCTTCGA
* * ***
67778576 TCTGCTCTCTGACAATACATATACGCCAAATGTGTTATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAAT-CCATATCTTCGA
*
67778620 TCTGGTCTCTGACAATACAGAGACGCCAAATC
1 TCTGCTCTCTGACAATACAGAGACGCCAAATC
67778652 GGCTATCGGT
Statistics
Matches: 390, Mismatches: 52, Indels: 47
0.80 0.11 0.10
Matches are distributed among these distances:
36 1 0.00
37 27 0.07
38 2 0.01
39 1 0.00
41 1 0.00
42 1 0.00
43 5 0.01
44 346 0.89
45 6 0.02
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.28
Consensus pattern (43 bp):
TCTGCTCTCTGACAATACAGAGACGCCAAATCCATATCTTCGA
Found at i:67778322 original size:132 final size:131
Alignment explanation
Indices: 67778147--67778668 Score: 566
Period size: 132 Copynumber: 4.0 Consensus size: 131
67778137 TTTCAGTCTG
* * *
67778147 CTCTCTGACAATACAGAGACGCCAAATC-CACTA-CTTTCAATCTGCTCTCTGACAATACAGAGA
1 CTCTCCGACAATACAGAGACGCCAAATCTGA-TATC-TTCGATCTGCTCTCTGACAATACAGAGA
* * * * *
67778210 CACCAAATCTATC-ATCTTCGATCTGCTCTCT-ATAAATACAGAGAAGCCAAATCTGATATCGTC
64 CGCCAAATCTAGCTATCTTCGATCTGCTCTCTGA-CAATACAGAGACGCCAAATC-GCTATCGT-
67778273 GATCTA
126 GATCTA
* * **
67778279 CTCTCCGACAATACAAAGACGCCAAATCTGATATCTTCGATCTGCTCTCTGACAATATAGAGATT
1 CTCTCCGACAATACAGAGACGCCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAGAGACG
* *
67778344 CCAAATCT-GCTATTTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTATCTTCGAT
66 CCAAATCTAGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATC-GCTATCGT-GAT
* *
67778408 TTG
129 CTA
* * * *
67778411 CTCTCTGACAATACAGAGACGCCAAATCCGCTATCTTCGATCTGTTCTCTGACAATACAGAGACG
1 CTCTCCGACAATACAGAGACGCCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAGAGACG
* *
67778476 CCAAATC-AGCTATCTTCGATCTGCTCTCTGATAATACAGAGACTCCAAAT--CT-T--TGATCT
66 CCAAATCTAGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCGCTATCGTGATCT
*
67778535 G
131 A
* * ** * * *
67778536 CT-TTCTATCAATACAGAGAAACCAAATCTGATGTCTTCGATCTGCTCTCTGACAATACATATAC
1 CTCTCCGA-CAATACAGAGACGCCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
67778600 GCCAAATGT-GTTATCTTCGATCTGGTCTCTGACAATACAGAGACGCCAAATCGGCTATCGGTGA
65 GCCAAATCTAGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATC-GCTATC-GTGA
67778664 TCTA
128 TCTA
67778668 C
1 C
67778669 ATTGTCCCTT
Statistics
Matches: 331, Mismatches: 45, Indels: 28
0.82 0.11 0.07
Matches are distributed among these distances:
124 2 0.01
125 100 0.30
126 1 0.00
128 3 0.01
129 3 0.01
131 1 0.00
132 218 0.66
133 3 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (131 bp):
CTCTCCGACAATACAGAGACGCCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAGAGACG
CCAAATCTAGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCGCTATCGTGATCT
A
Found at i:67778537 original size:37 final size:37
Alignment explanation
Indices: 67778487--67778564 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
67778477 CAAATCAGCT
**
67778487 ATCTTCGATCTGCTCTCTGAT-AATACAGAGACTCCAA
1 ATCTTCGATCTGCTCTCT-ATCAATACAGAGAAACCAA
* *
67778524 ATCTTTGATCTGCTTTCTATCAATACAGAGAAACCAA
1 ATCTTCGATCTGCTCTCTATCAATACAGAGAAACCAA
67778561 ATCT
1 ATCT
67778565 GATGTCTTCG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
36 2 0.06
37 34 0.94
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (37 bp):
ATCTTCGATCTGCTCTCTATCAATACAGAGAAACCAA
Found at i:67790142 original size:27 final size:27
Alignment explanation
Indices: 67790102--67790155 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
67790092 TAAATTACAC
67790102 AATATACATCATCATCTTATGCATATA
1 AATATACATCATCATCTTATGCATATA
* *
67790129 AATATACGTTATCATCTTATGCATATA
1 AATATACATCATCATCTTATGCATATA
67790156 TAATCATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (27 bp):
AATATACATCATCATCTTATGCATATA
Found at i:67790928 original size:25 final size:25
Alignment explanation
Indices: 67790869--67790928 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
67790859 ATTTTCATAT
*
67790869 ATAAATAATATTTATAGTAAAATAA
1 ATAAATTATATTTATAGTAAAATAA
* *
67790894 AT-ACTGTATA-TTATATTTAAAATAA
1 ATAAAT-TATATTTATA-GTAAAATAA
67790919 ATAAATTATA
1 ATAAATTATA
67790929 AAGAGAGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
24 7 0.25
25 19 0.68
26 2 0.07
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (25 bp):
ATAAATTATATTTATAGTAAAATAA
Found at i:67792481 original size:44 final size:44
Alignment explanation
Indices: 67792431--67793010 Score: 709
Period size: 44 Copynumber: 13.4 Consensus size: 44
67792421 AAACTCAGGA
* * * * *
67792431 ACGCCAAATCTGTTATTTTCGATATGCCCTCTGATAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
67792475 ACGCCAAATCCGCTATTTTCGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
67792519 ACTCCAGATCTGCTATTTTCGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
*
67792563 ACGCCAAATCTG-TCATCTTCGATCTACTCTCT-ATCAATACAGAG
1 ACGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGA-CAATACAGAG
* *
67792607 ACGCCAAATCTGATATCTTCGATCTGCTCTCTAACAAT-CAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
67792650 ACGCCAAATCTGATATCTTCGATCTGCTCTCTGACAATACGGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
67792694 ACGCCAAATCTGCTATTTTTGATTTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
67792738 ACG-CAAATCAGCTATCTTCGATCTACTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
67792781 ATC-CCAAATCAGCTATCTTCGATCTGCTCTCTAACAATACAGAG
1 A-CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * * * *
67792825 ATGCCAAATCCGCTATCTTTGATCTACTCTCTGAAAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
*
67792869 ACGCCAAA--T-CT-T-TT--ATCTGCTTTCT-ATCAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGA-CAATACAGAG
* * * *
67792906 ACACCAAATCTGATATCTTCGATCTTCTCCCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* **
67792950 ATGCCAAATCTATTATCTTCGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
*
67792994 ACGCCAAATCGGCTATC
1 ACGCCAAATCTGCTATC
67793011 GGTGATCTAC
Statistics
Matches: 466, Mismatches: 53, Indels: 34
0.84 0.10 0.06
Matches are distributed among these distances:
36 1 0.00
37 25 0.05
39 3 0.01
40 2 0.00
41 3 0.01
42 2 0.00
43 80 0.17
44 347 0.74
45 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (44 bp):
ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
Found at i:67792724 original size:131 final size:130
Alignment explanation
Indices: 67792431--67793010 Score: 703
Period size: 131 Copynumber: 4.5 Consensus size: 130
67792421 AAACTCAGGA
* * * * * *
67792431 ACGCCAAATCTGTTATTTTCGATATGCCCTCTGATAATACAGAGACGCCAAATCCGCTATTTTCG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAAT-CGCTATCTTCG
* * * *
67792496 ATCTGCTCTCTGACAATACAGAGACTCCAGATCTGCTATTTTCGATCTGCTCTCTGACAATACAG
65 ATCTGCTCTCTAACAATACAGAGAC-CCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAG
67792561 AG
129 AG
* *
67792563 ACGCCAAATCTG-TCATCTTCGATCTACTCTCT-ATCAATACAGAGACGCCAAATCTGATATCTT
1 ACGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGA-CAATACAGAGACGCCAAATC-GCTATCTT
67792626 CGATCTGCTCTCTAACAAT-CAGAGACGCCAAATCTGATATCTTCGATCTGCTCTCTGACAATAC
63 CGATCTGCTCTCTAACAATACAGAGAC-CCAAATCTGATATCTTCGATCTGCTCTCTGACAATAC
*
67792690 GGAG
127 AGAG
* * *
67792694 ACGCCAAATCTGCTATTTTTGATTTGCTCTCTGACAATACAGAGACG-CAAATCAGCTATCTTCG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATC-GCTATCTTCG
* * * * *
67792758 ATCTACTCTCTGACAATACAGAGATCCCAAATCAGCTATCTTCGATCTGCTCTCTAACAATACAG
65 ATCTGCTCTCTAACAATACAGAGA-CCCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAG
67792823 AG
129 AG
* * * * *
67792825 ATGCCAAATCCGCTATCTTTGATCTACTCTCTGAAAATACAGAGACGCCAAAT--CT-T-TT--A
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCGCTATCTTCGA
* * * *
67792884 TCTGCTTTCTATCAATACAGAGACACCAAATCTGATATCTTCGATCTTCTCCCTGACAATACAGA
66 TCTGCTCTCTAACAATACAGAGAC-CCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAGA
67792949 G
130 G
* **
67792950 ATGCCAAATCTATTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCGGCTATC
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATC-GCTATC
67793011 GGTGATCTAC
Statistics
Matches: 388, Mismatches: 46, Indels: 30
0.84 0.10 0.06
Matches are distributed among these distances:
124 1 0.00
125 103 0.27
127 2 0.01
128 3 0.01
129 3 0.01
130 30 0.08
131 170 0.44
132 76 0.20
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (130 bp):
ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCGCTATCTTCGA
TCTGCTCTCTAACAATACAGAGACCCAAATCTGATATCTTCGATCTGCTCTCTGACAATACAGAG
Found at i:67792900 original size:81 final size:81
Alignment explanation
Indices: 67792802--67792967 Score: 224
Period size: 81 Copynumber: 2.0 Consensus size: 81
67792792 GCTATCTTCG
** * * *
67792802 ATCTGCTCTCTAACAATACAGAGATGCCAAATCCGCTATCTTTGATCTACTCTCTGAAAATACAG
1 ATCTGCTCTCTAACAATACAGAGACACCAAATCCGATATCTTCGATCTACTCCCTGAAAATACAG
*
67792867 AGACGCCAAATCTTTT
66 AGACGCCAAATCTATT
* * * * *
67792883 ATCTGCTTTCTATCAATACAGAGACACCAAATCTGATATCTTCGATCTTCTCCCTGACAATACAG
1 ATCTGCTCTCTAACAATACAGAGACACCAAATCCGATATCTTCGATCTACTCCCTGAAAATACAG
*
67792948 AGATGCCAAATCTATT
66 AGACGCCAAATCTATT
67792964 ATCT
1 ATCT
67792968 TCGATCTGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.31
Consensus pattern (81 bp):
ATCTGCTCTCTAACAATACAGAGACACCAAATCCGATATCTTCGATCTACTCCCTGAAAATACAG
AGACGCCAAATCTATT
Found at i:67795104 original size:20 final size:18
Alignment explanation
Indices: 67795055--67795109 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
67795045 TTTAAAGGTT
67795055 ATAAAAGT-AATTAGTAA
1 ATAAAAGTAAATTAGTAA
* *
67795072 ATAAATGACAAATTATGTAA
1 ATAAAAG-TAAATTA-GTAA
67795092 ATTAAAAGTAAATTAGTA
1 A-TAAAAGTAAATTAGTA
67795110 TCATCTTCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
17 6 0.20
19 8 0.27
20 11 0.37
21 5 0.17
ACGTcount: A:0.56, C:0.02, G:0.11, T:0.31
Consensus pattern (18 bp):
ATAAAAGTAAATTAGTAA
Found at i:67795437 original size:9 final size:9
Alignment explanation
Indices: 67795425--67795449 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
67795415 ATAGAAATTT
67795425 ATGAAATAA
1 ATGAAATAA
67795434 ATGAAATAA
1 ATGAAATAA
67795443 ATGAAAT
1 ATGAAAT
67795450 CTAGGGCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (9 bp):
ATGAAATAA
Found at i:67796072 original size:25 final size:25
Alignment explanation
Indices: 67796027--67796083 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
67796017 AACTTGTGTA
* * *
67796027 AGCATACCGATTTACTACTCGTGAG
1 AGCATACCAATCTACTACTCGAGAG
*
67796052 AGCATACCAATCTAC-AGCTCGAGTG
1 AGCATACCAATCTACTA-CTCGAGAG
67796077 AGCATAC
1 AGCATAC
67796084 TGATTCACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (25 bp):
AGCATACCAATCTACTACTCGAGAG
Found at i:67797835 original size:45 final size:45
Alignment explanation
Indices: 67797779--67797865 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
67797769 GAATTATGTA
*
67797779 ATCTGAACTCATTGAGTTGTGGTTTGAGTTCATGATATATGTAAC
1 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTAAC
*
67797824 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCGTGATATATGT
1 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGT
67797866 GACACATGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.24, C:0.11, G:0.24, T:0.40
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTAAC
Found at i:67804539 original size:20 final size:21
Alignment explanation
Indices: 67804489--67804563 Score: 84
Period size: 20 Copynumber: 3.6 Consensus size: 21
67804479 AAACTATATA
67804489 TAGTTTAATTAAGCATAATCAATT
1 TAGTTTAATTAA-CATAATC--TT
67804513 TAGTTTAATTAACATAATCTT
1 TAGTTTAATTAACATAATCTT
*
67804534 TA-TTTAATTAACTTAA-C-T
1 TAGTTTAATTAACATAATCTT
*
67804552 TATTTTAATTAA
1 TAGTTTAATTAA
67804564 AGCTTATGTT
Statistics
Matches: 49, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
18 3 0.06
19 10 0.20
20 13 0.27
21 4 0.08
23 7 0.14
24 12 0.24
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (21 bp):
TAGTTTAATTAACATAATCTT
Found at i:67805921 original size:39 final size:39
Alignment explanation
Indices: 67805878--67805983 Score: 185
Period size: 39 Copynumber: 2.7 Consensus size: 39
67805868 TTCTAGCATG
*
67805878 TAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACA
1 TAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACA
*
67805917 TAGCCTGCGGACCCTAAGTCTGGATATAATTCCAGCACA
1 TAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACA
*
67805956 TAGCCTGCAGACCCTAAGTCCGGATATA
1 TAGCCTGCGGACCCTAAGTCCGGATATA
67805984 CATCACTGAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (39 bp):
TAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACA
Found at i:67811684 original size:26 final size:26
Alignment explanation
Indices: 67811616--67811684 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 26
67811606 ATCCCTATTT
* ** *
67811616 ATTTTACCCCCAACAAAATTTTGACG
1 ATTTTACCCCTAGTAAAATTTTGACA
* *
67811642 ATTTTACCCTTGGTAAAATTTTGACA
1 ATTTTACCCCTAGTAAAATTTTGACA
* *
67811668 ATTTTGCCCCTATTAAA
1 ATTTTACCCCTAGTAAA
67811685 TTTCAAGAAA
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.38
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGACA
Found at i:67817110 original size:40 final size:40
Alignment explanation
Indices: 67817061--67817228 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
67817051 TCTTCGGAAT
* *
67817061 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
67817100 TTAACCCGGAT-TTGGTAGCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * *
67817140 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
67817180 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
67817220 TTAGCCCGG
1 TTAGCCCGG
67817229 GTATCATTCA
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 5 0.05
40 98 0.93
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:67817188 original size:80 final size:80
Alignment explanation
Indices: 67817052--67817228 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
67817042 AACCGAGCTT
* * * * **
67817052 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
*
67817116 -AGCTTGCACAAATGC
66 CA-CTAGCACAAATGC
* ** *
67817131 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAA
*
67817195 TCACTAGCATAAATGC
65 TCACTAGCACAAATGC
67817211 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
67817229 GTATCATTCA
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 10 0.12
80 69 0.84
81 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
CACTAGCACAAATGC
Found at i:67837600 original size:10 final size:9
Alignment explanation
Indices: 67837577--67837608 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
67837567 TAACGCCCCA
67837577 ATTTTTGGG
1 ATTTTTGGG
67837586 ATTTTTGGG
1 ATTTTTGGG
*
67837595 ATTTTTGTG
1 ATTTTTGGG
67837604 ATTTT
1 ATTTT
67837609 AAATAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.12, C:0.00, G:0.25, T:0.62
Consensus pattern (9 bp):
ATTTTTGGG
Found at i:67839358 original size:28 final size:28
Alignment explanation
Indices: 67839327--67839414 Score: 117
Period size: 28 Copynumber: 3.2 Consensus size: 28
67839317 TGGAGAAGCG
67839327 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
67839355 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* ** * *
67839383 ATCTGGTAACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
67839409 TTCTGG
1 TTCTGG
67839415 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.09
27 8 0.15
28 41 0.76
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:67848004 original size:40 final size:40
Alignment explanation
Indices: 67847919--67848069 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
67847909 AATTGAATGA
* * *
67847919 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGATA-TAC
* * *
67847959 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT--ATAC
*
67848000 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATATAC
*
67848039 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
67848070 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 5 0.05
40 82 0.90
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATATAC
Found at i:67848083 original size:40 final size:40
Alignment explanation
Indices: 67847955--67848085 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
67847945 TATGCTGGAA
* * *
67847955 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
67847995 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
67848035 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
67848075 ATTATATCCGG
1 ATTATATCCGG
67848086 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:67855960 original size:40 final size:39
Alignment explanation
Indices: 67855894--67856058 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 39
67855884 AAATTGAATG
* *
67855894 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* * * **
67855933 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* *
67855973 ACATCCGGGCTAAGACCCGAAGGC-ATTCG-TGCGAGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GAGATT
* * ** *
67856011 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
67856051 ATATCCGG
1 ATATCCGG
67856059 TTATATTCCG
Statistics
Matches: 98, Mismatches: 23, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
37 1 0.01
38 26 0.27
39 18 0.18
40 53 0.54
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAGATT
Found at i:67856026 original size:38 final size:38
Alignment explanation
Indices: 67855895--67856042 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
67855885 AATTGAATGA
* * * *
67855895 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
67855934 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
67855972 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
67856012 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
67856043 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:67856057 original size:78 final size:78
Alignment explanation
Indices: 67855894--67856058 Score: 192
Period size: 78 Copynumber: 2.1 Consensus size: 78
67855884 AAATTGAATG
*
67855894 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
67855959 TTGTGCTAGTGGCT
65 TTGTGCTAGTGACT
* * * * *
67855973 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
67856036 TTTGTGC-ACGTGATT
64 ATTGTGCTA-GTGACT
67856051 ATATCCGG
1 ATATCCGG
67856059 TTATATTCCG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
77 1 0.01
78 45 0.62
79 16 0.22
80 11 0.15
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGACT
Found at i:67858191 original size:26 final size:25
Alignment explanation
Indices: 67858161--67858218 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
67858151 ATTTACTAAA
*
67858161 ATACCCTAAGTATAAAAATTACCATT
1 ATACCCTAAGT-GAAAAATTACCATT
* * *
67858187 TTACCTTTAGGTGAAAAATTACCATT
1 ATACC-CTAAGTGAAAAATTACCATT
67858213 ATACCC
1 ATACCC
67858219 CTAGGGTTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.33
Consensus pattern (25 bp):
ATACCCTAAGTGAAAAATTACCATT
Found at i:67858223 original size:26 final size:26
Alignment explanation
Indices: 67858174--67858223 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
67858164 CCCTAAGTAT
* **
67858174 AAAAATTACCATTTTACCTTTAGGTG
1 AAAAATTACCATTATACCCCTAGGTG
67858200 AAAAATTACCATTATACCCCTAGG
1 AAAAATTACCATTATACCCCTAGG
67858224 GTTAATTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (26 bp):
AAAAATTACCATTATACCCCTAGGTG
Found at i:67858366 original size:28 final size:28
Alignment explanation
Indices: 67858326--67858389 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
67858316 GGAGGAAGCG
67858326 TTCTGGTGGCTATGCCACAAATATCTAT
1 TTCTGGTGGCTATGCCACAAATATCTAT
*
67858354 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTAT
*
67858382 ATCTGGTG
1 TTCTGGTG
67858390 ACCCTGTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTAT
Found at i:67861366 original size:13 final size:13
Alignment explanation
Indices: 67861348--67861373 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67861338 TCCACAATAT
67861348 CACGAGCAAGTGC
1 CACGAGCAAGTGC
67861361 CACGAGCAAGTGC
1 CACGAGCAAGTGC
67861374 AATAGAGGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.31, T:0.08
Consensus pattern (13 bp):
CACGAGCAAGTGC
Found at i:67864116 original size:71 final size:71
Alignment explanation
Indices: 67864032--67864195 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67864022 CGATTTGTCT
67864032 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67864097 CTTTCA
66 CTTTCA
67864103 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67864168 CTTTCA
66 CTTTCA
67864174 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
67864196 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:67864233 original size:71 final size:70
Alignment explanation
Indices: 67864032--67864229 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
67864022 CGATTTGTCT
* * * *
67864032 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
67864097 CTTTCA
65 CTTTCA
* * * *
67864103 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
67864168 CTTTCA
65 CTTTCA
* *
67864174 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
67864230 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:67866606 original size:86 final size:85
Alignment explanation
Indices: 67866497--67866666 Score: 211
Period size: 86 Copynumber: 2.0 Consensus size: 85
67866487 TTTCGATATG
* * * *
67866497 TGATATCGTGTAAGACCACGTCTGGGAC-GTTGGCATTGACT-TTTGTTTTACGTGTAAGACCAT
1 TGATATCGTGTAAGACCACGTCTGGGACAG-TGGCATCGA-TGTTTG-ATTACATGTAAGACCAC
67866560 GTCTAGGACATTGGCATCGTATT
63 GTCTAGGACATTGGCATCGTATT
*
67866583 TGATTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATGTTTGATTACATGTAAGACCACGT
1 TGATATCGTGTAAGACCAC-GTCTGGGACAGTGGCATCGATGTTTGATTACATGTAAGACCACGT
* * *
67866647 CTGGGACGTTGGCATTGTAT
65 CTAGGACATTGGCATCGTAT
67866667 ATGCTTTCTG
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
85 35 0.48
86 37 0.51
87 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.34
Consensus pattern (85 bp):
TGATATCGTGTAAGACCACGTCTGGGACAGTGGCATCGATGTTTGATTACATGTAAGACCACGTC
TAGGACATTGGCATCGTATT
Found at i:67866642 original size:43 final size:42
Alignment explanation
Indices: 67866503--67866661 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 42
67866493 TATGTGATAT
* *
67866503 CGTGTAAGACCACGTCTGGGACGTTGGCATTGACTTTTGTTTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TTTTG-ATTA
* * * *
67866547 CGTGTAAGACCATGTCTAGGACATTGGCATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTTGATTA
67866589 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATGTTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TTTGATTA
*
67866632 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
67866662 TGTATATGCT
Statistics
Matches: 97, Mismatches: 12, Indels: 13
0.80 0.10 0.11
Matches are distributed among these distances:
42 31 0.32
43 37 0.38
44 29 0.30
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTTGATTA
Found at i:67870087 original size:40 final size:40
Alignment explanation
Indices: 67870030--67870139 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
67870020 ATTGAATGAT
* * * *
67870030 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACTAC
* * * *
67870070 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACTAC
67870110 ATCCGGGCTAAGACCCGAAGGCATTTATGC
1 ATCCGGGCTAAGACCCGAAGGCATTTATGC
67870140 AAATTGTGAA
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACTAC
Found at i:67875782 original size:31 final size:31
Alignment explanation
Indices: 67875747--67875810 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
67875737 TTTACTTAAT
67875747 TAGCCAACCATTCAAGCATAATATATGCACA
1 TAGCCAACCATTCAAGCATAATATATGCACA
67875778 TAGCCAACCATTCAAGCATAATATATGCACA
1 TAGCCAACCATTCAAGCATAATATATGCACA
67875809 TA
1 TA
67875811 CATTGCCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.42, C:0.25, G:0.09, T:0.23
Consensus pattern (31 bp):
TAGCCAACCATTCAAGCATAATATATGCACA
Found at i:67876791 original size:42 final size:42
Alignment explanation
Indices: 67876733--67876848 Score: 126
Period size: 44 Copynumber: 2.7 Consensus size: 42
67876723 TCGATGTCAC
* * * * * *
67876733 TGTCCCATACAAGGTCTTACACGAA-CCCATATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAATCACAAAT-CAATGCCAA
*
67876775 TGTCCCAGACATGGTCTTACACATAAATCACAAATCAATGCCAA
1 TGTCCCAGACATGGTCTTACAC--GAATCACAAATCAATGCCAA
*
67876819 TGTCCCAGACGTGGTCTTACACGAATCACA
1 TGTCCCAGACATGGTCTTACACGAATCACA
67876849 TATCGAAATC
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
42 27 0.44
44 30 0.48
45 5 0.08
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACGAATCACAAATCAATGCCAA
Found at i:67878539 original size:19 final size:20
Alignment explanation
Indices: 67878500--67878540 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
67878490 TTGCATAAGT
* *
67878500 TGTAAAATAGGTGATAAATG
1 TGTAAAATAGATGAGAAATG
67878520 TGTAAAATA-ATGAGAAATG
1 TGTAAAATAGATGAGAAATG
67878539 TG
1 TG
67878541 GGCTGTTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (20 bp):
TGTAAAATAGATGAGAAATG
Found at i:67879346 original size:47 final size:48
Alignment explanation
Indices: 67879033--67879348 Score: 161
Period size: 47 Copynumber: 6.7 Consensus size: 48
67879023 CACATTATGA
* * *
67879033 GAGCCAGTGTAAGACCATGTCTGGGAAATGGCATCAGAATTGAGATGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGAGGAT
* * * * *
67879081 GAGCTAATGTAAGA-CATGCCTGGGACAT-GCATCAACCTCGAGATGG-T
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGAGA-GGAT
* * * *
67879128 AAGCCAGTGTAAGA-CATGTGTGGCACAT-GTATCGAC-T-ACGA-GAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGA-GAGGAT
* * * * * *
67879172 GTGTCAGTGTAAGGCCATGTCTGGGACATGGCAT-AACATAGATATGTGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGA-G-GAT
* * * * * * **** *
67879221 GATCTAGTATAAGACCATGTCTGGGACATGGCGTTGGCCTTGATTTCAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGC-ATCGACTTGAGAGGAT
* ** * * *
67879270 AATTCATTGTAAGACCATGTCTAGCACATGGCATCGACTTGA-AGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAGGAT
67879317 GAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGC
67879349 GTCAGCATTG
Statistics
Matches: 192, Mismatches: 60, Indels: 33
0.67 0.21 0.12
Matches are distributed among these distances:
43 1 0.01
44 12 0.06
45 17 0.09
46 14 0.07
47 68 0.35
48 21 0.11
49 51 0.27
50 7 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAGGAT
Found at i:67881607 original size:40 final size:40
Alignment explanation
Indices: 67881480--67881609 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
67881470 ATGCTGGAAA
* *
67881480 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
67881520 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
67881560 TTCTATCCGGGCTAAGATCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
67881600 TTATATCCGG
1 TTATATCCGG
67881610 TTGTATTCTG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:67888709 original size:28 final size:28
Alignment explanation
Indices: 67888629--67888710 Score: 128
Period size: 29 Copynumber: 2.9 Consensus size: 28
67888619 TGGGAAGTAG
*
67888629 TTGGGCTCGATGGGCCATATGAATGTGAT
1 TTGGGC-CAATGGGCCATATGAATGTGAT
*
67888658 TTGGGCCTAATGGGCCATACGAATGTGAT
1 TTGGGCC-AATGGGCCATATGAATGTGAT
67888687 TTGGGCCAATGGGCCATATGAATG
1 TTGGGCCAATGGGCCATATGAATG
67888711 AGTGGGCCTA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
28 17 0.35
29 32 0.65
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.28
Consensus pattern (28 bp):
TTGGGCCAATGGGCCATATGAATGTGAT
Found at i:67889059 original size:27 final size:27
Alignment explanation
Indices: 67889029--67889405 Score: 364
Period size: 27 Copynumber: 14.1 Consensus size: 27
67889019 TAATAATGAT
*
67889029 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
67889056 AAATTA-TCAAAATACCCTTGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
67889083 AAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
67889109 AAATTA-TCGAAATACCCCCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
67889136 AAATTA-TCGAAATATCCTCGATTTGT-
1 AAATTACT-GAAATACCCTCGATTTGTA
*
67889162 AAATTA-TCAAAATACCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
67889189 AAATTA-TCGAAACACCTTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
67889216 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
67889243 AAATTA-TCGAAACACCTTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
67889270 AAATTA-TCGAAATATCCCT-AATTTGTA
1 AAATTACT-GAAATA-CCCTCGATTTGTA
* * * *
67889297 AAATTACTAAAATACCCT-TAATTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
67889323 AAATTACTTAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
67889350 AAATTACCGAAATACCCTCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
67889377 AAATTA-TCGAAACACCCTTGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
67889404 AA
1 AA
67889406 CAATTTGTAA
Statistics
Matches: 297, Mismatches: 42, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
26 72 0.24
27 221 0.74
28 4 0.01
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:67889162 original size:80 final size:81
Alignment explanation
Indices: 67889038--67889513 Score: 471
Period size: 80 Copynumber: 5.8 Consensus size: 81
67889028 TAAATTACTA
* *
67889038 AAATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCG
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCG
*
67889103 A-TTGTGAAATTATCG
66 ATTTGTAAAATTATCG
* * * * *
67889118 AAATACCCCCAATTTGTAAAATTATCGAAATATCCTCGATTTGT-AAATTATCAAAATACCCTCG
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCG
67889182 ATTTGTAAAATTATCG
66 ATTTGTAAAATTATCG
* * * * * *
67889198 AAACACCTTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCTTCG
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCG
67889263 ATTTGTAAAATTATCG
66 ATTTGTAAAATTATCG
* * * * * **
67889279 AAATATCCCT-AATTTGTAAAATTA-CTAAAATACCCT-TAATTGTGAAATTACTTAAATACCCT
1 AAATA-CCCTCGATTTGTAAAATTATC-GAAATACCCTCGATTTGTAAAATTACCGAAATACCCT
* *
67889341 TGATTTGTAAAATTACCG
64 CGATTTGTAAAATTATCG
* * * *
67889359 AAATACCCTCGATTTGTGAAATTATCGAAACACCCTTGATTTGTAAACAATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCC--------T---CGATTTGTAAAATTACCG
*
67889424 AAATACCCTCAATTTGTAAAATTA-CTG
55 AAATACCCTCGATTTGTAAAATTATC-G
* * * * *
67889451 AAACAGCCTCGATTTGTAAAATTATCTAAATACCCTTG-TAGTGTAAAATTACCGAAATACCCT
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGAT-TTGTAAAATTACCGAAATACCCT
67889514 TGTAGTATAA
Statistics
Matches: 324, Mismatches: 52, Indels: 39
0.78 0.13 0.09
Matches are distributed among these distances:
79 23 0.07
80 150 0.46
81 81 0.25
82 3 0.01
84 1 0.00
88 1 0.00
91 1 0.00
92 64 0.20
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (81 bp):
AAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCG
ATTTGTAAAATTATCG
Found at i:67889244 original size:54 final size:54
Alignment explanation
Indices: 67889038--67889513 Score: 434
Period size: 54 Copynumber: 8.7 Consensus size: 54
67889028 TAAATTACTA
* * * *
67889038 AAATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTTGTAAAATTACCG
1 AAATACCTTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTATCG
* * * *
67889092 AAATACCCTCGA-TTGTGAAATTATCGAAATACCCCCAATTTGTAAAATTATCG
1 AAATACCTTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTATCG
*
67889145 AAATATCC-TCGATTTGT-AAATTATCAAAATACCCTCGATTTGTAAAATTATCG
1 AAATA-CCTTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTATCG
* *
67889198 AAACACCTTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
1 AAATACCTTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTATCG
* * *
67889252 AAACACCTTCGATTTGTAAAATTATCGAAATATCCCT-AATTTGTAAAATTA-CTA
1 AAATACCTTCGATTTGTAAAATTATCGAAATA-CCCTCGATTTGTAAAATTATC-G
* * * * *
67889306 AAATACCCTT--AATTGTGAAATTA-CTTAAATACCCTTGATTTGTAAAATTACCG
1 AAATA-CCTTCGATTTGTAAAATTATC-GAAATACCCTCGATTTGTAAAATTATCG
* * * *
67889359 AAATACCCTCGATTTGTGAAATTATCGAAACACCCTTGATTTGTAAACAATTTGTAAAATTATCG
1 AAATACCTTCGATTTGTAAAATTATCGAAATACCC--------T---CGATTTGTAAAATTATCG
* * * * *
67889424 AAATACCCTCAATTTGTAAAATTA-CTGAAACAGCCTCGATTTGTAAAATTATCT
1 AAATACCTTCGATTTGTAAAATTATC-GAAATACCCTCGATTTGTAAAATTATCG
* *
67889478 AAATACCCTT-G-TAGTGTAAAATTACCGAAATACCCT
1 AAATA-CCTTCGAT-TTGTAAAATTATCGAAATACCCT
67889514 TGTAGTATAA
Statistics
Matches: 356, Mismatches: 38, Indels: 56
0.79 0.08 0.12
Matches are distributed among these distances:
52 10 0.03
53 126 0.35
54 159 0.45
55 13 0.04
57 1 0.00
62 1 0.00
64 1 0.00
65 45 0.13
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (54 bp):
AAATACCTTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTATCG
Found at i:67889421 original size:38 final size:38
Alignment explanation
Indices: 67889370--67889443 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
67889360 AATACCCTCG
* **
67889370 ATTTGTGAAATTATCGAAACACCCTTGATTTGTAAACA
1 ATTTGTAAAATTATCGAAACACCCTCAATTTGTAAACA
*
67889408 ATTTGTAAAATTATCGAAATACCCTCAATTTGTAAA
1 ATTTGTAAAATTATCGAAACACCCTCAATTTGTAAA
67889444 ATTACTGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (38 bp):
ATTTGTAAAATTATCGAAACACCCTCAATTTGTAAACA
Found at i:67889436 original size:27 final size:27
Alignment explanation
Indices: 67889406--67889513 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
67889396 GATTTGTAAA
67889406 CAATTTGTAAAATTATCGAAATACCCT
1 CAATTTGTAAAATTATCGAAATACCCT
* *
67889433 CAATTTGTAAAATTA-CTGAAACAGCCT
1 CAATTTGTAAAATTATC-GAAATACCCT
* *
67889460 CGATTTGTAAAATTATCTAAATACCCT
1 CAATTTGTAAAATTATCGAAATACCCT
** * *
67889487 -TGTAGTGTAAAATTACCGAAATACCCT
1 CAAT-TTGTAAAATTATCGAAATACCCT
67889514 TGTAGTATAA
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.03
27 64 0.96
28 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
CAATTTGTAAAATTATCGAAATACCCT
Found at i:67889447 original size:65 final size:65
Alignment explanation
Indices: 67889343--67889470 Score: 195
Period size: 65 Copynumber: 2.0 Consensus size: 65
67889333 AATACCCTTG
* * *
67889343 ATTTGTAAAATTACCGAAATACCCTCGATTTGTGAAATTA-TCGAAACACCCTTGATTTGTAAAC
1 ATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACT-GAAACACCCTCGATTTGTAAAC
67889407 A
65 A
* *
67889408 ATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACTGAAACAGCCTCGATTTGTAAA
1 ATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACTGAAACACCCTCGATTTGTAAA
67889471 ATTATCTAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
65 56 0.98
66 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (65 bp):
ATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACTGAAACACCCTCGATTTGTAAACA
Found at i:67889554 original size:27 final size:27
Alignment explanation
Indices: 67889465--67889558 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 27
67889455 AGCCTCGATT
*
67889465 TGTAAAATTATCT-AAATACCCTTGTAG
1 TGTAAAATGA-CTGAAATACCCTTGTAG
* *
67889492 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATGACTGAAATACCCTTGTAG
* * *
67889519 TATAAAATGACTGACATACCCCTGTAG
1 TGTAAAATGACTGAAATACCCTTGTAG
*
67889546 GGTAAAATGACTG
1 TGTAAAATGACTG
67889559 TTTTGCCCTT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.02
27 57 0.98
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (27 bp):
TGTAAAATGACTGAAATACCCTTGTAG
Found at i:67892981 original size:46 final size:47
Alignment explanation
Indices: 67892877--67893043 Score: 175
Period size: 46 Copynumber: 3.6 Consensus size: 47
67892867 ACATTATAAG
*** * *
67892877 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAATATTGAGAT-AA
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCCTCGAGATGTA
* * *
67892924 GAGCTAATGTAAGA-CATGTTTGGGACATGCATCAGCCTCGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGAGATGTA
*
67892971 AGCCAGTGTAAGA-CATGTCTGGGACATGCATC-GGCTACGAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCCT-CGAGATGTA
*
67893016 -GTCAGTGTAAGACCATGTCTGGGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATG
67893044 GAATTGGCAT
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
44 11 0.11
45 18 0.17
46 49 0.48
47 14 0.14
48 11 0.11
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGAGATGTA
Found at i:67894528 original size:40 final size:40
Alignment explanation
Indices: 67894483--67894650 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
67894473 CGGAATATAA
67894483 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
67894523 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
67894563 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
67894603 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
67894643 CCGGATAT
1 CCGGATAT
67894651 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67894633 original size:80 final size:80
Alignment explanation
Indices: 67894499--67894648 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
67894489 ATAATCACGT
*
67894499 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
67894563 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
67894579 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
67894642 CCCGGAT
64 CCCGGAT
67894649 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:67897886 original size:27 final size:27
Alignment explanation
Indices: 67897865--67898232 Score: 451
Period size: 27 Copynumber: 13.7 Consensus size: 27
67897855 TAAATTACTA
*
67897865 AAATACCCTCGATTTGTAAAATTATCA
1 AAATACCCTCGATTTGTAAAATTATCG
* *
67897892 AAATACCCTTGATTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTATCG
*
67897919 AAATACCCTCGA-TTGTGAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCG
* *
67897945 AAATACCCCCAATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCG
* *
67897972 AAATATCCTCGATTTGT-AAATTATCA
1 AAATACCCTCGATTTGTAAAATTATCG
67897998 AAATACCCTCGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCG
* * *
67898025 AAACACCTTCGATTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTATCG
67898052 AAATACCCTCGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCG
* *
67898079 AAACACCTTCGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCG
* *
67898106 AAATATCCCT-AATTTGTAAAATTA-CTA
1 AAATA-CCCTCGATTTGTAAAATTATC-G
* * * *
67898133 AAATACCCT-TAATTGTGAAATTA-CTT
1 AAATACCCTCGATTTGTAAAATTATC-G
* *
67898159 AAATACCCTTGATTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTATCG
*
67898186 AAATACCCTCGATTTGTGAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCG
* *
67898213 AAACACCCTTGATTTGTAAA
1 AAATACCCTCGATTTGTAAA
67898233 CAATTTGTAA
Statistics
Matches: 294, Mismatches: 41, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
26 73 0.25
27 217 0.74
28 4 0.01
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTATCG
Found at i:67897989 original size:80 final size:81
Alignment explanation
Indices: 67897865--67898339 Score: 462
Period size: 80 Copynumber: 5.8 Consensus size: 81
67897855 TAAATTACTA
* *
67897865 AAATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCG
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCG
*
67897930 A-TTGTGAAATTATCG
66 ATTTGTAAAATTATCG
* * * * *
67897945 AAATACCCCCAATTTGTAAAATTATCGAAATATCCTCGATTTGT-AAATTATCAAAATACCCTCG
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCG
67898009 ATTTGTAAAATTATCG
66 ATTTGTAAAATTATCG
* * * * * *
67898025 AAACACCTTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCTTCG
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCG
67898090 ATTTGTAAAATTATCG
66 ATTTGTAAAATTATCG
* * * * * **
67898106 AAATATCCCT-AATTTGTAAAATTA-CTAAAATACCCT-TAATTGTGAAATTACTTAAATACCCT
1 AAATA-CCCTCGATTTGTAAAATTATC-GAAATACCCTCGATTTGTAAAATTACCGAAATACCCT
* *
67898168 TGATTTGTAAAATTACCG
64 CGATTTGTAAAATTATCG
* * * *
67898186 AAATACCCTCGATTTGTGAAATTATCGAAACACCCTTGATTTGTAAACAATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCC--------T---CGATTTGTAAAATTACCG
*
67898251 AAATACCCTCAATTTGTAAAATTA-CTG
55 AAATACCCTCGATTTGTAAAATTATC-G
* * * * *
67898278 AAACAGCCTCGA-TTGTAAAATTATCTAAATACCCTTG-TAGTGTAAAATTACCGAAATACCCT
1 AAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGAT-TTGTAAAATTACCGAAATACCCT
67898340 TGTAGTATAA
Statistics
Matches: 323, Mismatches: 52, Indels: 40
0.78 0.13 0.10
Matches are distributed among these distances:
79 24 0.07
80 170 0.53
81 60 0.19
82 3 0.01
83 1 0.00
88 1 0.00
91 20 0.06
92 44 0.14
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (81 bp):
AAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCG
ATTTGTAAAATTATCG
Found at i:67898248 original size:38 final size:38
Alignment explanation
Indices: 67898197--67898270 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
67898187 AATACCCTCG
* **
67898197 ATTTGTGAAATTATCGAAACACCCTTGATTTGTAAACA
1 ATTTGTAAAATTATCGAAACACCCTCAATTTGTAAACA
*
67898235 ATTTGTAAAATTATCGAAATACCCTCAATTTGTAAA
1 ATTTGTAAAATTATCGAAACACCCTCAATTTGTAAA
67898271 ATTACTGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (38 bp):
ATTTGTAAAATTATCGAAACACCCTCAATTTGTAAACA
Found at i:67898274 original size:65 final size:64
Alignment explanation
Indices: 67898170--67898296 Score: 184
Period size: 65 Copynumber: 2.0 Consensus size: 64
67898160 AATACCCTTG
* * *
67898170 ATTTGTAAAATTACCGAAATACCCTCGATTTGTGAAATTA-TCGAAACACCCTTGATTTGTAAAC
1 ATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACT-GAAACACCCTCGA-TTGTAAAC
67898234 A
64 A
* *
67898235 ATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACTGAAACAGCCTCGATTGTAAA
1 ATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACTGAAACACCCTCGATTGTAAA
67898297 ATTATCTAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
64 7 0.12
65 48 0.86
66 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (64 bp):
ATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACTGAAACACCCTCGATTGTAAACA
Found at i:67898326 original size:118 final size:118
Alignment explanation
Indices: 67898116--67898341 Score: 278
Period size: 118 Copynumber: 1.9 Consensus size: 118
67898106 AAATATCCCT
* * * * *
67898116 AATTTGTAAAATTACTAAAATACCCTTAATTGTGAAATTACTTAAATACCCTTGATTTGTAAAAT
1 AATTTGTAAAATTACTAAAATACCCTCAATTGTAAAATTACTGAAACACCCTCGATTTGTAAAAT
* * *
67898181 TACCGAAATACCCTCGATTTGTGAAATTATCGAAACACCCTTGATTTGTAAAC
66 TACCGAAATACCCTCGATGTGTAAAATTACCGAAACACCCTTGATTTGTAAAC
* *
67898234 AATTTGTAAAATTA-TCGAAATACCCTCAATTTGTAAAATTACTGAAACAGCCTCGA-TTGTAAA
1 AATTTGTAAAATTACT-AAAATACCCTCAA-TTGTAAAATTACTGAAACACCCTCGATTTGTAAA
* * * *
67898297 ATTATCTAAATACCCTTG-TAGTGTAAAATTACCGAAATACCCTTG
64 ATTACCGAAATACCCTCGAT-GTGTAAAATTACCGAAACACCCTTG
67898342 TAGTATAAAA
Statistics
Matches: 91, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
117 2 0.02
118 68 0.75
119 21 0.23
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (118 bp):
AATTTGTAAAATTACTAAAATACCCTCAATTGTAAAATTACTGAAACACCCTCGATTTGTAAAAT
TACCGAAATACCCTCGATGTGTAAAATTACCGAAACACCCTTGATTTGTAAAC
Found at i:67898340 original size:27 final size:27
Alignment explanation
Indices: 67898238--67898379 Score: 108
Period size: 27 Copynumber: 5.3 Consensus size: 27
67898228 GTAAACAATT
* ** *
67898238 TGTAAAATTATCGAAATACCC-TCAATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* * * * *
67898265 TGTAAAATTACTGAAACAGCCTCG-AT
1 TGTAAAATTACCGAAATACCCTTGTAG
* *
67898291 TGTAAAATTATCTAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
67898318 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
* * * * *
67898345 TATAAAATGACTGACATACCCCTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
67898372 GGTAAAAT
1 TGTAAAAT
67898380 GACTGTTTTG
Statistics
Matches: 91, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
26 19 0.21
27 72 0.79
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:67898377 original size:145 final size:145
Alignment explanation
Indices: 67898090--67898354 Score: 331
Period size: 145 Copynumber: 1.8 Consensus size: 145
67898080 AACACCTTCG
* * *
67898090 ATTTGTAAAATTATCGAAATATCCCTAATTTGTAAAATTACTAAAATACCCTTAATTGTGAAATT
1 ATTTGTAAAATTATCGAAATATCCCTAATTTGTAAAATTACTAAAACACCCTCAATTGTAAAATT
* * * * *
67898155 ACTTAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGTGAAATTATCGAAACACC
66 ACTTAAATACCCTTGATGTGTAAAATTACCGAAATACCCTCGATGTATAAAATGATCGAAACACC
* **
67898220 CTTGATTTGTAAACA
131 CCTGATGGGTAAACA
* * *
67898235 ATTTGTAAAATTATCGAAATA-CCCTCAATTTGTAAAATTACTGAAACAGCCTCGATTGTAAAAT
1 ATTTGTAAAATTATCGAAATATCCCT-AATTTGTAAAATTACTAAAACACCCTCAATTGTAAAAT
*
67898299 TA-TCTAAATACCCTTG-TAGTGTAAAATTACCGAAATACCCTTG-TAGTATAAAATGA
65 TACT-TAAATACCCTTGAT-GTGTAAAATTACCGAAATACCCTCGAT-GTATAAAATGA
67898355 CTGACATACC
Statistics
Matches: 104, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
144 7 0.07
145 97 0.93
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (145 bp):
ATTTGTAAAATTATCGAAATATCCCTAATTTGTAAAATTACTAAAACACCCTCAATTGTAAAATT
ACTTAAATACCCTTGATGTGTAAAATTACCGAAATACCCTCGATGTATAAAATGATCGAAACACC
CCTGATGGGTAAACA
Found at i:67898380 original size:27 final size:27
Alignment explanation
Indices: 67898265--67898384 Score: 109
Period size: 27 Copynumber: 4.5 Consensus size: 27
67898255 ACCCTCAATT
* * * * *
67898265 TGTAAAATTACTGAAACAGCCTCG-AT
1 TGTAAAATGACTGAAATACCCTTGTAG
*
67898291 TGTAAAATTATCT-AAATACCCTTGTAG
1 TGTAAAATGA-CTGAAATACCCTTGTAG
* *
67898318 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATGACTGAAATACCCTTGTAG
* * *
67898345 TATAAAATGACTGACATACCCCTGTAG
1 TGTAAAATGACTGAAATACCCTTGTAG
*
67898372 GGTAAAATGACTG
1 TGTAAAATGACTG
67898385 TTTTGCCCTT
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
26 19 0.24
27 60 0.76
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (27 bp):
TGTAAAATGACTGAAATACCCTTGTAG
Found at i:67901793 original size:46 final size:44
Alignment explanation
Indices: 67901743--67901854 Score: 138
Period size: 46 Copynumber: 2.5 Consensus size: 44
67901733 TAAGAGCTAA
* *
67901743 TGTAAGACAT-TTTGGGACATGCATCAGCTCTCGAGATGTAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCAGCT-ACGAGATGT--GCCAG
* *
67901789 TGTAAGACATGTCTGGG-CATGCATCGGCTACGAGATGTGTCAG
1 TGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGTGCCAG
67901832 TGTAAGACCATGTCTGGGACATG
1 TGTAAGA-CATGTCTGGGACATG
67901855 GAATTGGCAT
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
43 11 0.19
44 10 0.17
45 12 0.20
46 21 0.36
47 5 0.08
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGTGCCAG
Found at i:67903334 original size:41 final size:40
Alignment explanation
Indices: 67903288--67903454 Score: 117
Period size: 41 Copynumber: 4.2 Consensus size: 40
67903278 CGGAATATAA
67903288 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCATTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTC-TTAGC
* ** * *
67903329 CCGGATA-GATGTCTCGCACGAA-GCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
67903367 CCGGATGTAGCCACTAGCGCCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGC-ACAAATGCCTTCGGGTCTTAGC
** * * * * *
67903408 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
67903447 CCGGATAT
1 CCGGATAT
67903455 CATTCAATTT
Statistics
Matches: 96, Mismatches: 26, Indels: 10
0.73 0.20 0.08
Matches are distributed among these distances:
38 11 0.11
39 28 0.29
40 23 0.24
41 34 0.35
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67906298 original size:28 final size:28
Alignment explanation
Indices: 67906257--67906337 Score: 119
Period size: 28 Copynumber: 2.9 Consensus size: 28
67906247 GGGAAGTAAG
*
67906257 TTGGGCTCGATGGGCCATATGAATGTGAT
1 TTGGGC-CAATGGGCCATATGAATGTGAT
*
67906286 TT-GGCCTAATGGGCCATACGAATGTGAT
1 TTGGGCC-AATGGGCCATATGAATGTGAT
67906314 TTGGGCCAATGGGCCATATGAATG
1 TTGGGCCAATGGGCCATATGAATG
67906338 AGTGGGCCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
27 1 0.02
28 40 0.85
29 6 0.13
ACGTcount: A:0.23, C:0.16, G:0.32, T:0.28
Consensus pattern (28 bp):
TTGGGCCAATGGGCCATATGAATGTGAT
Found at i:67906685 original size:27 final size:27
Alignment explanation
Indices: 67906655--67907030 Score: 339
Period size: 27 Copynumber: 14.1 Consensus size: 27
67906645 TAATAATGAT
*
67906655 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
67906682 AAATTA-TCAAAATACCCTTGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
67906709 AAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
67906735 AAATTA-TCGAAATACCCCCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
67906762 AAATTA-TCGAAATATCCTCGATTTGT-
1 AAATTACT-GAAATACCCTCGATTTGTA
*
67906788 AAATTA-TCAAAATACCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
67906815 AAATTA-TCGAAACACCTTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
67906842 AAATTACCGAAAATACCCTCGATTTGTA
1 AAATTACTG-AAATACCCTCGATTTGTA
* *
67906870 AAA-TA-TCGAAACACCTTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
67906896 AAATTA-TCGAAATATCCCT-AATTTGTA
1 AAATTACT-GAAATA-CCCTCGATTTGTA
* * * *
67906923 AAATTACTAAAATACCCT-TAATTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
67906949 AAATTACTTAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
67906976 AAATTACCGAAATACCCCCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
*
67907003 AAATTA-TCGAAA-ACCCTTGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
67907029 AA
1 AA
67907031 CAATTTGTAA
Statistics
Matches: 293, Mismatches: 43, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
26 104 0.35
27 166 0.57
28 23 0.08
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:67906759 original size:53 final size:54
Alignment explanation
Indices: 67906655--67907030 Score: 424
Period size: 53 Copynumber: 7.0 Consensus size: 54
67906645 TAATAATGAT
** * * *
67906655 AAATTACTAAAATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTGAAATTATCGAAATACCCTCGATTTGTA
* *
67906709 AAATTACCGAAATACCCTCGA-TTGTGAAATTATCGAAATACCCCCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTGAAATTATCGAAATACCCTCGATTTGTA
* * *
67906762 AAATTATCGAAATATCCTCGATTTGT-AAATTATCAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTGAAATTATCGAAATACCCTCGATTTGTA
* * * * *
67906815 AAATTATCGAAACACCTTCGATTTGTAAAATTACCGAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTGAAATTATCG-AAATACCCTCGATTTGTA
* * * * *
67906870 AAA-TATCGAAACACCTTCGATTTGTAAAATTATCGAAATATCCCT-AATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTGAAATTATCGAAATA-CCCTCGATTTGTA
** * * * *
67906923 AAATTACTAAAATACCCT-TAATTGTGAAATTA-CTTAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTGAAATTATC-GAAATACCCTCGATTTGTA
* *
67906976 AAATTACCGAAATACCCCCGATTTGTGAAATTATCGAAA-ACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTGAAATTATCGAAATACCCTCGATTTGTA
67907029 AA
1 AA
67907031 CAATTTGTAA
Statistics
Matches: 278, Mismatches: 35, Indels: 19
0.84 0.11 0.06
Matches are distributed among these distances:
52 5 0.02
53 162 0.58
54 89 0.32
55 22 0.08
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (54 bp):
AAATTACCGAAATACCCTCGATTTGTGAAATTATCGAAATACCCTCGATTTGTA
Found at i:67906788 original size:80 final size:81
Alignment explanation
Indices: 67906664--67907138 Score: 435
Period size: 80 Copynumber: 5.8 Consensus size: 81
67906654 TAAATTACTA
* * *
67906664 AAATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCG
1 AAATACCCCCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCG
*
67906729 A-TTGTGAAATTATCG
66 ATTTGTAAAATTATCG
* * * *
67906744 AAATACCCCCAATTTGTAAAATTATCGAAATATCCTCGATTTGT-AAATTATCAAAATACCCTCG
1 AAATACCCCCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCG
67906808 ATTTGTAAAATTATCG
66 ATTTGTAAAATTATCG
* ** * * * *
67906824 AAACACCTTCGATTTGTAAAATTACCGAAAATACCCTCGATTTGTAAAA-TATCGAAACACCTTC
1 AAATACCCCCGATTTGTAAAATTATCG-AAATACCCTCGATTTGTAAAATTACCGAAATACCCTC
67906888 GATTTGTAAAATTATCG
65 GATTTGTAAAATTATCG
* ** * * * * ** *
67906905 AAATATCCCTAATTTGTAAAATTA-CTAAAATACCCT-TAATTGTGAAATTACTTAAATACCCTT
1 AAATACCCCCGATTTGTAAAATTATC-GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC
*
67906968 GATTTGTAAAATTACCG
65 GATTTGTAAAATTATCG
* * *
67906985 AAATACCCCCGATTTGTGAAATTATCGAAA-ACCCTTGATTTGTAAACAATTTGTAAAATTATCG
1 AAATACCCCCGATTTGTAAAATTATCGAAATACCC--------T---CGATTTGTAAAATTACCG
*
67907049 AAATACCCTCAATTTGTAAAATTA-CTG
55 AAATACCCTCGATTTGTAAAATTATC-G
* * * * * *
67907076 AAACAGCCTCGATTTGTAAAATTATCTAAATACCCTTG-TAGTGTAAAATTACCGAAATACCCT
1 AAATACCCCCGATTTGTAAAATTATCGAAATACCCTCGAT-TTGTAAAATTACCGAAATACCCT
67907139 TGTAGTATAA
Statistics
Matches: 318, Mismatches: 56, Indels: 41
0.77 0.13 0.10
Matches are distributed among these distances:
79 31 0.10
80 133 0.42
81 85 0.27
82 3 0.01
84 1 0.00
87 1 0.00
90 1 0.00
91 59 0.19
92 4 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.33
Consensus pattern (81 bp):
AAATACCCCCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCG
ATTTGTAAAATTATCG
Found at i:67907046 original size:37 final size:38
Alignment explanation
Indices: 67906996--67907068 Score: 112
Period size: 37 Copynumber: 1.9 Consensus size: 38
67906986 AATACCCCCG
* **
67906996 ATTTGTGAAATTATCGAAA-ACCCTTGATTTGTAAACA
1 ATTTGTAAAATTATCGAAATACCCTCAATTTGTAAACA
67907033 ATTTGTAAAATTATCGAAATACCCTCAATTTGTAAA
1 ATTTGTAAAATTATCGAAATACCCTCAATTTGTAAA
67907069 ATTACTGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 18 0.56
38 14 0.44
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.36
Consensus pattern (38 bp):
ATTTGTAAAATTATCGAAATACCCTCAATTTGTAAACA
Found at i:67907061 original size:27 final size:27
Alignment explanation
Indices: 67907031--67907138 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
67907021 GATTTGTAAA
67907031 CAATTTGTAAAATTATCGAAATACCCT
1 CAATTTGTAAAATTATCGAAATACCCT
* *
67907058 CAATTTGTAAAATTA-CTGAAACAGCCT
1 CAATTTGTAAAATTATC-GAAATACCCT
* *
67907085 CGATTTGTAAAATTATCTAAATACCCT
1 CAATTTGTAAAATTATCGAAATACCCT
** * *
67907112 -TGTAGTGTAAAATTACCGAAATACCCT
1 CAAT-TTGTAAAATTATCGAAATACCCT
67907139 TGTAGTATAA
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.03
27 64 0.96
28 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
CAATTTGTAAAATTATCGAAATACCCT
Found at i:67907071 original size:64 final size:65
Alignment explanation
Indices: 67906969--67907095 Score: 177
Period size: 64 Copynumber: 2.0 Consensus size: 65
67906959 AATACCCTTG
* * *
67906969 ATTTGTAAAATTACCGAAATACCCCCGATTTGTGAAATTA-TCGAAA-ACCCTTGATTTGTAAAC
1 ATTTGTAAAATTACCGAAATACCCCCAATTTGTAAAATTACT-GAAACACCCTCGATTTGTAAAC
67907032 A
65 A
* * *
67907033 ATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACTGAAACAGCCTCGATTTGTAAA
1 ATTTGTAAAATTACCGAAATACCCCCAATTTGTAAAATTACTGAAACACCCTCGATTTGTAAA
67907096 ATTATCTAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
64 40 0.73
65 15 0.27
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (65 bp):
ATTTGTAAAATTACCGAAATACCCCCAATTTGTAAAATTACTGAAACACCCTCGATTTGTAAACA
Found at i:67907179 original size:27 final size:27
Alignment explanation
Indices: 67907090--67907183 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 27
67907080 AGCCTCGATT
*
67907090 TGTAAAATTATCT-AAATACCCTTGTAG
1 TGTAAAATGA-CTGAAATACCCTTGTAG
* *
67907117 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATGACTGAAATACCCTTGTAG
* * *
67907144 TATAAAATGACTGACATACCCCTGTAG
1 TGTAAAATGACTGAAATACCCTTGTAG
*
67907171 GGTAAAATGACTG
1 TGTAAAATGACTG
67907184 TTTTGCCCTT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.02
27 57 0.98
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (27 bp):
TGTAAAATGACTGAAATACCCTTGTAG
Found at i:67910603 original size:46 final size:47
Alignment explanation
Indices: 67910499--67910665 Score: 175
Period size: 46 Copynumber: 3.6 Consensus size: 47
67910489 CCATTATAAG
*** * *
67910499 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAATATTGAGAT-AA
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCCTCGAGATGTA
* * *
67910546 GAGCTAATGTAAGA-CATGTTTGGGACATGCATCAGCCTCGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGAGATGTA
*
67910593 AGCCAGTGTAAGA-CATGTCTGGGACATGCATC-GGCTACGAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCCT-CGAGATGTA
*
67910638 -GTCAGTGTAAGACCATGTCTGGGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATG
67910666 GAATTGGCAT
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
44 11 0.11
45 18 0.17
46 49 0.48
47 14 0.14
48 11 0.11
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGAGATGTA
Found at i:67912159 original size:36 final size:36
Alignment explanation
Indices: 67912112--67912216 Score: 124
Period size: 36 Copynumber: 2.8 Consensus size: 36
67912102 ATAATCACGT
*
67912112 GCACAAATGCCTTCGGGTCTTAGCCCGGATAG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGCACTA
67912148 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA--TAG-CACTA
* *
67912188 GCA-ATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAATGCCTTCGGGTCTTAGCCCGGATA
67912217 TAATTTCCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
36 30 0.49
38 25 0.41
40 6 0.10
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.24
Consensus pattern (36 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGCACTA
Found at i:67919324 original size:40 final size:40
Alignment explanation
Indices: 67919279--67919445 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 40
67919269 CGGAATATAA
67919279 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
67919319 CCGGATA-GATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
67919358 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
67919398 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
67919438 CCGGATAT
1 CCGGATAT
67919446 CATTCAATTT
Statistics
Matches: 99, Mismatches: 25, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
38 1 0.01
39 32 0.32
40 65 0.66
41 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67921936 original size:13 final size:13
Alignment explanation
Indices: 67921918--67921944 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67921908 CCCAAACAAT
67921918 AAAATTTTCACAC
1 AAAATTTTCACAC
67921931 AAAATTTTCACAC
1 AAAATTTTCACAC
67921944 A
1 A
67921945 TATAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:67931975 original size:21 final size:21
Alignment explanation
Indices: 67931951--67931992 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
67931941 ATGATGAATC
67931951 CGGCTTCTAAAATGGACCAAT
1 CGGCTTCTAAAATGGACCAAT
*
67931972 CGGCTTCTGAAATGGACCAAT
1 CGGCTTCTAAAATGGACCAAT
67931993 TGAAGGGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (21 bp):
CGGCTTCTAAAATGGACCAAT
Found at i:67933044 original size:27 final size:29
Alignment explanation
Indices: 67933014--67933068 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
67933004 TTGATAAATT
* *
67933014 TGAGTAATTT-GGG-CTAAATTGTGAAAA
1 TGAGAAATTTAGGGACTAAAATGTGAAAA
67933041 TGAGAAATTTAGGGACTAAAATGTGAAA
1 TGAGAAATTTAGGGACTAAAATGTGAAA
67933069 TAAATGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 9 0.38
28 3 0.12
29 12 0.50
ACGTcount: A:0.42, C:0.04, G:0.25, T:0.29
Consensus pattern (29 bp):
TGAGAAATTTAGGGACTAAAATGTGAAAA
Found at i:67933620 original size:44 final size:42
Alignment explanation
Indices: 67933568--67933726 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 42
67933558 TATCTTTTTT
67933568 CATGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGA-TT-TGATTTA
* * * * *
67933612 CGTGTAAGACCATGTCTAGGACATCGACATCGTATTTGATTT-
1 CATGTAAGACCACGTCTGGGACATTGGCATCG-ATTTGATTTA
*
67933654 CATGTAAGACC-CTGTCTGGGACAATGGCATCGATATTTGA-TTA
1 CATGTAAGACCAC-GTCTGGGACATTGGCATCG--ATTTGATTTA
* ** *
67933697 CATGTAAAATTACGTCTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACATTGGCAT
67933727 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 27 0.29
43 36 0.38
44 30 0.32
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (42 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGATTTGATTTA
Found at i:67936988 original size:58 final size:58
Alignment explanation
Indices: 67936919--67937035 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
67936909 CTTTAGTAAG
*
67936919 ATAGATTCGGGTACACAAAACTCCACTTAAGACATACGAAAGATAATTCACCCGAGGT
1 ATAGATTCGGGTACACAAAACTCCACTTAAGACATACGAAAGATAATGCACCCGAGGT
67936977 ATAGATTCGGGTACACAAAACTCCACTTAAGACATACGAAAGATAATGCACCCGAGGT
1 ATAGATTCGGGTACACAAAACTCCACTTAAGACATACGAAAGATAATGCACCCGAGGT
67937035 A
1 A
67937036 CCCCAACCAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (58 bp):
ATAGATTCGGGTACACAAAACTCCACTTAAGACATACGAAAGATAATGCACCCGAGGT
Found at i:67938257 original size:39 final size:39
Alignment explanation
Indices: 67938201--67938494 Score: 311
Period size: 39 Copynumber: 7.4 Consensus size: 39
67938191 AATGAAATAT
* *
67938201 TGATTATACTAAATGCTTGCTTAAACGAGCATTATCCAC
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
* * *
67938240 TAATTATACTGAATGCTTGCTCAGACGAGCATTATCCAT
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
* ** * *
67938279 TGATTATATTGAATGCTT-CTTTAACGAGCACTATCCAT
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
*
67938317 TGATTATACTGAATGTTTGAATGTTTTCTCAAACGAGCATTATCCAC
1 TGATTATACTGAATG-CT---TG----CTCAAACGAGCATTATCCAC
* * * *
67938364 TAATTATATTGACTGCTTTCTCAAACGAGCATTATCCAC
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
* *
67938403 TGATTATACTGAATACTTGCTCAAATGAGCATTATCCAC
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
* * * * *
67938442 TGATTATACTTAATGCTTACTCAAACAAGCATTACCCAT
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
67938481 TGATTATACTGAAT
1 TGATTATACTGAAT
67938495 AAGATTTTTT
Statistics
Matches: 210, Mismatches: 36, Indels: 18
0.80 0.14 0.07
Matches are distributed among these distances:
38 30 0.14
39 149 0.71
42 1 0.00
43 1 0.00
46 1 0.00
47 28 0.13
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.36
Consensus pattern (39 bp):
TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
Found at i:67940174 original size:32 final size:32
Alignment explanation
Indices: 67940133--67940198 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
67940123 TTGAGTCCTC
67940133 TTTTCACAAGCTTGGAAGTGCACTTTCCACAT
1 TTTTCACAAGCTTGGAAGTGCACTTTCCACAT
* *
67940165 TTTTCACAAGCTTGGGAGTGTACTTTCCACAT
1 TTTTCACAAGCTTGGAAGTGCACTTTCCACAT
67940197 TT
1 TT
67940199 CTTCTTTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (32 bp):
TTTTCACAAGCTTGGAAGTGCACTTTCCACAT
Found at i:67946285 original size:20 final size:20
Alignment explanation
Indices: 67946260--67946301 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
67946250 AAGTTAATTT
67946260 TTACGGATTAGTCCTTGATG
1 TTACGGATTAGTCCTTGATG
*
67946280 TTACGGATTAGTGCTTGATG
1 TTACGGATTAGTCCTTGATG
67946300 TT
1 TT
67946302 TTGTGTGCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.19, C:0.12, G:0.26, T:0.43
Consensus pattern (20 bp):
TTACGGATTAGTCCTTGATG
Found at i:67947531 original size:25 final size:25
Alignment explanation
Indices: 67947465--67947521 Score: 114
Period size: 25 Copynumber: 2.3 Consensus size: 25
67947455 AAGGGCACAC
67947465 GGCCATGGTACATGCCCGTGTACTA
1 GGCCATGGTACATGCCCGTGTACTA
67947490 GGCCATGGTACATGCCCGTGTACTA
1 GGCCATGGTACATGCCCGTGTACTA
67947515 GGCCATG
1 GGCCATG
67947522 TGTAACGCCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (25 bp):
GGCCATGGTACATGCCCGTGTACTA
Found at i:67948945 original size:93 final size:93
Alignment explanation
Indices: 67948833--67949004 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
67948823 GCCCATAAGT
* *
67948833 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67948898 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
67948926 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67948991 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
67949005 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:67949000 original size:46 final size:46
Alignment explanation
Indices: 67948825--67949000 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
67948815 TGTAACCCGC
* *
67948825 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
67948871 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
67948917 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
67948964 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
67949001 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:67953324 original size:39 final size:40
Alignment explanation
Indices: 67953216--67953400 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
67953206 TCGAATGGTG
* *
67953216 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
67953255 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
67953296 TCCGGGCTAAG-CCCTAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
67953335 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
67953374 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
67953401 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:67953353 original size:79 final size:81
Alignment explanation
Indices: 67953216--67953398 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
67953206 TCGAATGGTG
* *
67953216 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
67953280 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
67953295 TTCCGGGCTAAG-CCCTAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
67953357 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
67953375 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
67953399 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:67953422 original size:79 final size:79
Alignment explanation
Indices: 67953269--67953433 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
67953259 GGACTAAGAT
* * **
67953269 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCTAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
67953334 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
67953348 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
67953411 TATAT-CTGGTTAAATT
63 TAAATCCGGGTTAAATC
67953427 CCGAAGG
1 CCGAAGG
67953434 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 50 0.68
80 21 0.29
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:67954805 original size:15 final size:15
Alignment explanation
Indices: 67954781--67954830 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
67954771 GGGGTGTTAC
*
67954781 AGAAACCCAGAATAA
1 AGAAATCCAGAATAA
67954796 AGAAATCCAGAATAA
1 AGAAATCCAGAATAA
* *
67954811 AGAGATCCAGGATAA
1 AGAAATCCAGAATAA
67954826 AGAAA
1 AGAAA
67954831 CCCAAGATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AGAAATCCAGAATAA
Found at i:67957840 original size:46 final size:47
Alignment explanation
Indices: 67957773--67957900 Score: 224
Period size: 46 Copynumber: 2.8 Consensus size: 47
67957763 TGTAACCTGC
* *
67957773 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
67957819 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG-GACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
67957865 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGA
67957901 ATGCCCAAAT
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
45 1 0.01
46 77 0.99
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
Found at i:67963528 original size:48 final size:48
Alignment explanation
Indices: 67963457--67963585 Score: 181
Period size: 48 Copynumber: 2.7 Consensus size: 48
67963447 GTAACTTGCT
* * *
67963457 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCATATGT-T-GAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC-T-CGTCTCAAGGCC
* *
67963505 GATGCCATGTCCCAGACATGGTCTTACACTAGGTCTCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAAGGCC
67963553 GATGCCATGTCCCAGACATGGTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
67963586 GCACATATCA
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
46 2 0.03
47 2 0.03
48 69 0.95
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAAGGCC
Found at i:67963726 original size:31 final size:31
Alignment explanation
Indices: 67963688--67963750 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
67963678 TTGTTCAAAG
*
67963688 GATGTTTTAAATGAATAATGGCGGAAGCTAT
1 GATGTTTTAAATGAATAATGGCAGAAGCTAT
67963719 GATGTTTTAAATGAATAATGGCAGAAGCTAT
1 GATGTTTTAAATGAATAATGGCAGAAGCTAT
67963750 G
1 G
67963751 TAAAAAGGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (31 bp):
GATGTTTTAAATGAATAATGGCAGAAGCTAT
Found at i:67968174 original size:11 final size:11
Alignment explanation
Indices: 67968103--67968188 Score: 56
Period size: 11 Copynumber: 7.8 Consensus size: 11
67968093 ACAATGTTCA
*
67968103 AATTTTTTTTC
1 AATTTTTTTTG
67968114 AA--TTTTTT-
1 AATTTTTTTTG
67968122 AACTTTTTTTTG
1 AA-TTTTTTTTG
67968134 AA-TTTTTTT-
1 AATTTTTTTTG
* *
67968143 CATATTTTTTGG
1 AAT-TTTTTTTG
67968155 AACTTTTTTTTTTG
1 AA---TTTTTTTTG
*
67968169 AATTTTTTTCG
1 AATTTTTTTTG
67968180 AATTTTTTT
1 AATTTTTTT
67968189 AAAACTTACT
Statistics
Matches: 60, Mismatches: 5, Indels: 20
0.71 0.06 0.24
Matches are distributed among these distances:
8 2 0.03
9 7 0.12
10 7 0.12
11 31 0.52
12 3 0.05
14 9 0.15
15 1 0.02
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.70
Consensus pattern (11 bp):
AATTTTTTTTG
Found at i:67968394 original size:31 final size:31
Alignment explanation
Indices: 67968356--67968418 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
67968346 TTGTTCAAAG
67968356 GATGTTTTAAATGAATAATGGCAGAAGCTAT
1 GATGTTTTAAATGAATAATGGCAGAAGCTAT
*
67968387 GATGTTTTAAATGAATAATGGCGGAAGCTAT
1 GATGTTTTAAATGAATAATGGCAGAAGCTAT
67968418 G
1 G
67968419 TAAAAAGGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (31 bp):
GATGTTTTAAATGAATAATGGCAGAAGCTAT
Found at i:67971620 original size:76 final size:75
Alignment explanation
Indices: 67971464--67971627 Score: 177
Period size: 76 Copynumber: 2.2 Consensus size: 75
67971454 TCTTCATCAG
* * ** * * *
67971464 GCAATCCAGGGTGACAAGAATGAATTGATAAACCATCATTTTCGGGCAATCCAGTGTGGCATGTC
1 GCAATCTAGGGTAACAAGAATGAATTGATAAACCAT-ATTCACGGGCAATCCAGGGTGGCAAGCC
* *
67971529 ATCGTCCTCGG
65 ATCATCCTCGA
* * *
67971540 GCAATCTGGGGTAACAAGAATGAATTGATAAACCAT-TGTCACTGGGTAATCCAGGGTGGTAAGC
1 GCAATCTAGGGTAACAAGAATGAATTGATAAACCATAT-TCAC-GGGCAATCCAGGGTGGCAAGC
*
67971604 CATCATCGTCGA
64 CATCATCCTCGA
67971616 GCAATCTAGGGT
1 GCAATCTAGGGT
67971628 GGCATGTCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
74 1 0.01
75 2 0.03
76 69 0.96
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.24
Consensus pattern (75 bp):
GCAATCTAGGGTAACAAGAATGAATTGATAAACCATATTCACGGGCAATCCAGGGTGGCAAGCCA
TCATCCTCGA
Found at i:67979232 original size:53 final size:53
Alignment explanation
Indices: 67979163--67979366 Score: 203
Period size: 53 Copynumber: 3.8 Consensus size: 53
67979153 TTCCTTTTTA
* * * *
67979163 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * *
67979216 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
** * * * *
67979270 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTCGTA-G
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCT--TATG
* * *
67979325 AACTTACCAATGTCATGCCTTGGCATGGTCTTACTTGGTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
67979367 TTTAAACCCT
Statistics
Matches: 120, Mismatches: 27, Indels: 7
0.78 0.18 0.05
Matches are distributed among these distances:
53 45 0.38
54 34 0.28
55 39 0.32
57 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:67979318 original size:55 final size:53
Alignment explanation
Indices: 67979175--67979366 Score: 188
Period size: 55 Copynumber: 3.6 Consensus size: 53
67979165 CTTACCATTT
* *
67979175 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
* * * * ** * *
67979228 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AACTCACCAATG
* * *
67979283 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTCGTA-GAACTTACCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCT--TATGAACTCACCAATG
* * * *
67979337 TCATGCCTTGGCATGGTCTTACTTGGTATC
1 CCATGTCTTGACATGGTCTTACATGGTATC
67979367 TTTAAACCCT
Statistics
Matches: 110, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
53 35 0.32
54 34 0.31
55 39 0.35
57 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
Found at i:67986648 original size:24 final size:24
Alignment explanation
Indices: 67986621--67986670 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
67986611 CATGCATCGA
*
67986621 CATTCAAATCTACACACATAGTGC
1 CATTCAAATCCACACACATAGTGC
* * *
67986645 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCACACACATAGTGC
67986669 CA
1 CA
67986671 ATGTTAACTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.30, G:0.10, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCACACACATAGTGC
Found at i:67999932 original size:40 final size:40
Alignment explanation
Indices: 67999865--68000009 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 40
67999855 AAATTGAATG
* * * * *
67999865 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
67999905 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ** *
67999945 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
* *
67999985 CTACCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
68000010 TTTGTGCACG
Statistics
Matches: 86, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:68000010 original size:40 final size:39
Alignment explanation
Indices: 67999904--68000016 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 39
67999894 TGCTGGAAAT
* * * *
67999904 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATACCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* * *
67999944 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATACCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
*
67999984 TCTACCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATACCCGGGCTAAGACCCGAAGGCA-TTGTGC
68000017 ACGTGATTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
39 3 0.05
40 59 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TATACCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:68005226 original size:14 final size:14
Alignment explanation
Indices: 68005207--68005238 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
68005197 CTCTTATTTC
68005207 ATTCCAGAATATGA
1 ATTCCAGAATATGA
68005221 ATTCCAGAATATGA
1 ATTCCAGAATATGA
68005235 ATTC
1 ATTC
68005239 TATTCTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (14 bp):
ATTCCAGAATATGA
Done.