Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 231 of 378
Found at i:68377278 original size:46 final size:46
Alignment explanation
Indices: 68377105--68377278 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 46
68377095 TAACCCGCCT
* * *
68377105 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
*
68377151 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCC
* *
68377200 -TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
68377244 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68377279 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
Found at i:68391379 original size:47 final size:49
Alignment explanation
Indices: 68391266--68391444 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 49
68391256 TGTAACCCAG
* *
68391266 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGG--G-C-GTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACAT
* *
68391312 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * *
68391362 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
*
68391405 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
68391445 TCAACCATCC
Statistics
Matches: 111, Mismatches: 11, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 2 0.02
46 61 0.55
47 28 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:68391406 original size:93 final size:93
Alignment explanation
Indices: 68391273--68391444 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
68391263 CAGCCATAAG
* * *
68391273 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
68391338 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* ** *
68391366 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
68391431 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
68391445 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68394872 original size:27 final size:27
Alignment explanation
Indices: 68394842--68395107 Score: 156
Period size: 27 Copynumber: 10.0 Consensus size: 27
68394832 ACATGCTAGA
* *
68394842 AAATGTAAGCCTTTGTAGAAATCTATG
1 AAATGGAAGCCTTTGTGGAAATCTATG
* * **
68394869 AAATGAAAGTCTTTGTGGCGTATC--TG
1 AAATGGAAGCCTTTGTGG-AAATCTATG
*
68394895 AAATGGAAGCCTTTGTGGAAATATATG
1 AAATGGAAGCCTTTGTGGAAATCTATG
*
68394922 AAATGGAAGCCTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGAAATCTATG
***
68394949 AAATGGAAAG-CTTT-ACAACATATCTA--
1 AAATGG-AAGCCTTTGTGGA-A-ATCTATG
** *
68394975 AAATGGAAGTATTTGTGGCATATC--TG
1 AAATGGAAGCCTTTGTGG-AAATCTATG
* *
68395001 AAATGGAAGCCTTTGTGGCAATCTGTG
1 AAATGGAAGCCTTTGTGGAAATCTATG
* *
68395028 AAATAGAAGCCTTTGTGGCATATCTA--
1 AAATGGAAGCCTTTGTGG-AAATCTATG
*** * **
68395054 AAATGGAAAAATTTTTGTCAATCTATG
1 AAATGGAAGCCTTTGTGGAAATCTATG
* * **
68395081 AAATTGAGGCCTTTGTGGTGATCTATG
1 AAATGGAAGCCTTTGTGGAAATCTATG
68395108 GAAAGGATTG
Statistics
Matches: 177, Mismatches: 46, Indels: 32
0.69 0.18 0.13
Matches are distributed among these distances:
25 13 0.07
26 58 0.33
27 90 0.51
28 16 0.09
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGAAATCTATG
Found at i:68394922 original size:53 final size:53
Alignment explanation
Indices: 68394842--68395061 Score: 207
Period size: 53 Copynumber: 4.2 Consensus size: 53
68394832 ACATGCTAGA
* * * *
68394842 AAATGTAAGCCTTTGTAGAAATCTATGAAATGAAAGTCTTTGTGGCGTATCTG
1 AAATGGAAGCCTTTGTAGAAATATATGAAATGAAAGCCTTTGTGGCATATCTG
* *
68394895 AAATGGAAGCCTTTGTGGAAATATATGAAATGGAAGCCTTTGTGGCA-ATCTATG
1 AAATGGAAGCCTTTGTAGAAATATATGAAATGAAAGCCTTTGTGGCATATC--TG
* * * * **
68394949 AAATGGAAAG-C-TT-TACAACATATCTAAAATGGAAGTATTTGTGGCATATCTG
1 AAATGG-AAGCCTTTGTAGAA-ATATATGAAATGAAAGCCTTTGTGGCATATCTG
* * * * *
68395001 AAATGGAAGCCTTTGTGGCAATCTGTGAAAT-AGAAGCCTTTGTGGCATATCTA
1 AAATGGAAGCCTTTGTAGAAATATATGAAATGA-AAGCCTTTGTGGCATATCTG
68395054 AAATGGAA
1 AAATGGAA
68395062 AAATTTTTGT
Statistics
Matches: 136, Mismatches: 22, Indels: 18
0.77 0.12 0.10
Matches are distributed among these distances:
51 3 0.02
52 15 0.11
53 101 0.74
54 14 0.10
55 3 0.02
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (53 bp):
AAATGGAAGCCTTTGTAGAAATATATGAAATGAAAGCCTTTGTGGCATATCTG
Found at i:68395076 original size:53 final size:53
Alignment explanation
Indices: 68394861--68395098 Score: 169
Period size: 53 Copynumber: 4.5 Consensus size: 53
68394851 CCTTTGTAGA
* * * *** *
68394861 AATCTATGAAAT-GAAAGTCTTTGTGGCGTATCTGAAATGGAAGCCTTTGTGGA
1 AATCTATGAAATAG-AAGCCTTTGTGGCATATCTAAAATGGAAAAATTTGTGGC
* * ** ****
68394914 AATATATGAAATGGAAGCCTTTGTGGCA-ATCTATGAAATGGAAAGCTTTACAAC
1 AATCTATGAAATAGAAGCCTTTGTGGCATATCTA--AAATGGAAAAATTTGTGGC
* ** * ***
68394968 ATATCTA--AAATGGAAGTATTTGTGGCATATCTGAAATGGAAGCCTTTGTGGC
1 A-ATCTATGAAATAGAAGCCTTTGTGGCATATCTAAAATGGAAAAATTTGTGGC
* * *
68395020 AATCTGTGAAATAGAAGCCTTTGTGGCATATCTAAAATGGAAAAATTTTTGTC
1 AATCTATGAAATAGAAGCCTTTGTGGCATATCTAAAATGGAAAAATTTGTGGC
* *
68395073 AATCTATGAAATTGAGGCCTTTGTGG
1 AATCTATGAAATAGAAGCCTTTGTGG
68395099 TGATCTATGG
Statistics
Matches: 144, Mismatches: 34, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
51 4 0.03
52 18 0.12
53 100 0.69
54 18 0.12
55 4 0.03
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (53 bp):
AATCTATGAAATAGAAGCCTTTGTGGCATATCTAAAATGGAAAAATTTGTGGC
Found at i:68395096 original size:106 final size:106
Alignment explanation
Indices: 68394861--68395098 Score: 277
Period size: 106 Copynumber: 2.2 Consensus size: 106
68394851 CCTTTGTAGA
*
68394861 AATCTATGAAA-TGAAAGTCTTTGTGGCGTATCTGAAATGGAAGCCTTTGTGGAAATATATGAAA
1 AATCTATGAAATTG-AAGTCTTTGTGGCATATCTGAAATGGAAGCCTTTGTGGAAATATATGAAA
* **
68394925 TGGAAGCCTTTGTGGCAATCTATGAAATGGAAAGCTTTACAAC
65 TAGAAGCCTTTGTGGCAATCTA-GAAATGGAAAAATTTACAAC
* * * * *
68394968 ATATCTA--AAATGGAAGTATTTGTGGCATATCTGAAATGGAAGCCTTTGTGGCAATCTGTGAAA
1 A-ATCTATGAAATTGAAGTCTTTGTGGCATATCTGAAATGGAAGCCTTTGTGGAAATATATGAAA
****
68395031 TAGAAGCCTTTGTGGCATATCTA-AAATGGAAAAATTTTTGTC
65 TAGAAGCCTTTGTGGCA-ATCTAGAAATGGAAAAATTTACAAC
* *
68395073 AATCTATGAAATTGAGGCCTTTGTGG
1 AATCTATGAAATTGAAGTCTTTGTGG
68395099 TGATCTATGG
Statistics
Matches: 109, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
104 5 0.05
105 14 0.13
106 78 0.72
107 7 0.06
108 5 0.05
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (106 bp):
AATCTATGAAATTGAAGTCTTTGTGGCATATCTGAAATGGAAGCCTTTGTGGAAATATATGAAAT
AGAAGCCTTTGTGGCAATCTAGAAATGGAAAAATTTACAAC
Found at i:68401356 original size:41 final size:41
Alignment explanation
Indices: 68401311--68401406 Score: 138
Period size: 41 Copynumber: 2.3 Consensus size: 41
68401301 ATCAATAGGT
68401311 CTGCTCACACAAGCCGACAGTCATGACGAAGCCACATGGTG
1 CTGCTCACACAAGCCGACAGTCATGACGAAGCCACATGGTG
** ** *
68401352 CTGCTCACACAAGTTGATGGTCATGACGAAGCTACATGGTG
1 CTGCTCACACAAGCCGACAGTCATGACGAAGCCACATGGTG
*
68401393 CTACTCACACAAGC
1 CTGCTCACACAAGC
68401407 TAACAAGTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (41 bp):
CTGCTCACACAAGCCGACAGTCATGACGAAGCCACATGGTG
Found at i:68404859 original size:34 final size:35
Alignment explanation
Indices: 68404745--68404861 Score: 155
Period size: 35 Copynumber: 3.3 Consensus size: 35
68404735 TAATCCAATT
68404745 GAAACACACCAGATGCTCATAAGAGCTAATCCATCC
1 GAAACACACCA-ATGCTCATAAGAGCTAATCCATCC
* * *
68404781 GGAACACATCAATGCTCATAAGAGCTAATCCATCT
1 GAAACACACCAATGCTCATAAGAGCTAATCCATCC
* * *
68404816 GAAATACACCAATACACATAAGAGCT-ATCCATCC
1 GAAACACACCAATGCTCATAAGAGCTAATCCATCC
*
68404850 AAAACACACCAA
1 GAAACACACCAA
68404862 AATAGAGAGC
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
34 17 0.24
35 44 0.63
36 9 0.13
ACGTcount: A:0.43, C:0.29, G:0.11, T:0.17
Consensus pattern (35 bp):
GAAACACACCAATGCTCATAAGAGCTAATCCATCC
Found at i:68406107 original size:76 final size:75
Alignment explanation
Indices: 68405995--68406162 Score: 191
Period size: 76 Copynumber: 2.2 Consensus size: 75
68405985 TAAATATGAA
* * * *
68405995 AAAACACATAATGCAAGTCTTAAATGATGCTAATGTATTAATTCAAAGCA-TTAACTAAAGATAC
1 AAAATACATAATGCAAGTCTTAAAAGATGCTAATGTATTAATGCAAAACATTTAA-TAAAGATAC
*
68406059 ATTCAATAAAC
65 ATTCAACAAAC
* *
68406070 AAGAA-ACATAATGCACATTTTTAAAAGATG-TAGATGTATTAATGCAAAACATTTAATAAAGAT
1 AA-AATACATAATGCA-AGTCTTAAAAGATGCTA-ATGTATTAATGCAAAACATTTAATAAAGAT
* *
68406133 GCATTTAACAAAC
63 ACATTCAACAAAC
68406146 AAAATACATAATG-AAGT
1 AAAATACATAATGCAAGT
68406163 AGATCACTAA
Statistics
Matches: 79, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
74 2 0.03
75 17 0.22
76 56 0.71
77 4 0.05
ACGTcount: A:0.49, C:0.12, G:0.11, T:0.28
Consensus pattern (75 bp):
AAAATACATAATGCAAGTCTTAAAAGATGCTAATGTATTAATGCAAAACATTTAATAAAGATACA
TTCAACAAAC
Found at i:68408590 original size:68 final size:70
Alignment explanation
Indices: 68408518--68408715 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
68408508 ACACCCTGTA
* * * *
68408518 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
68408580 ATAAAT
65 ATAAAT
*
68408586 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
68408651 ATAAAT
65 ATAAAT
*
68408657 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
68408716 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:68408629 original size:41 final size:41
Alignment explanation
Indices: 68408584--68408701 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
68408574 TGAAAGATAA
68408584 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
68408625 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
68408655 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
68408696 ATGTAG
1 ATGTAG
68408702 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:68408641 original size:71 final size:71
Alignment explanation
Indices: 68408552--68408715 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
68408542 GAGATGTATC
68408552 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
68408617 AGGACA
66 AGGACA
68408623 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
68408688 AGGACA
66 AGGACA
68408694 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
68408716 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:68416159 original size:68 final size:70
Alignment explanation
Indices: 68416087--68416284 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
68416077 ACACCCTGTA
* * * *
68416087 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
68416149 ATAAAT
65 ATAAAT
*
68416155 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
68416220 ATAAAT
65 ATAAAT
*
68416226 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
68416285 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:68416198 original size:41 final size:41
Alignment explanation
Indices: 68416153--68416270 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
68416143 TGAAAGATAA
68416153 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
68416194 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
68416224 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
68416265 ATGTAG
1 ATGTAG
68416271 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:68416210 original size:71 final size:71
Alignment explanation
Indices: 68416121--68416284 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
68416111 GAGATGTATC
68416121 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
68416186 AGGACA
66 AGGACA
68416192 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
68416257 AGGACA
66 AGGACA
68416263 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
68416285 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:68422475 original size:50 final size:49
Alignment explanation
Indices: 68422354--68422540 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
68422344 GTGAGTTGCA
* * * *
68422354 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
**
68422405 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * * *
68422455 TGTGTAGTACTAAGTTCAGGCTACTACGTGTACCAGACTGTTGGTCTCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
* *
68422504 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
68422541 TAGCTTCGGC
Statistics
Matches: 117, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 39 0.33
50 42 0.36
51 31 0.26
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:68426540 original size:21 final size:21
Alignment explanation
Indices: 68426516--68426582 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
68426506 TGATCTCGAG
68426516 GTGGAGGTGAACGACCTCGTT
1 GTGGAGGTGAACGACCTCGTT
** ** *
68426537 GTGGTTGT-AAATAGGCTCGTT
1 GTGGAGGTGAACGA-CCTCGTT
68426558 GTGGAGGTGAACGACCTCGTT
1 GTGGAGGTGAACGACCTCGTT
68426579 GTGG
1 GTGG
68426583 TCTCCCCTCT
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
20 3 0.09
21 28 0.82
22 3 0.09
ACGTcount: A:0.18, C:0.15, G:0.39, T:0.28
Consensus pattern (21 bp):
GTGGAGGTGAACGACCTCGTT
Found at i:68427146 original size:20 final size:19
Alignment explanation
Indices: 68427112--68427152 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
68427102 TACTATTATT
*
68427112 TTTTCAACTTCAATTTTTG
1 TTTTCAACTTCAATTGTTG
68427131 TTTTCAACTTCAAATTGTTG
1 TTTTCAACTTC-AATTGTTG
68427151 TT
1 TT
68427153 GTTGTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (19 bp):
TTTTCAACTTCAATTGTTG
Found at i:68427867 original size:76 final size:75
Alignment explanation
Indices: 68427703--68427874 Score: 197
Period size: 76 Copynumber: 2.3 Consensus size: 75
68427693 ATTAAATATG
* * *
68427703 AAAAAAAACACATAATGCAAGTCTTAAAAGATGCTAATGTATTAATGCAAAGCATTAACTAAAGA
1 AAAAAAAACACATAATGCAAGTCTTAAAAGATGCTAATGTATTAATACAAAACATTAAATAAAGA
*
68427768 CACATTCAAT
66 CACATTCAAC
* * * *
68427778 AAACAAGAA-ACATAATGCACATTTTTAAAAGATG-TAGATGTATTAATATAAAACATTAAATAA
1 AAA-AAAAACACATAATGCA-AGTCTTAAAAGATGCTA-ATGTATTAATACAAAACATTAAATAA
** *
68427841 AGATGCATTTAAC
63 AGACACATTCAAC
68427854 AAAAAAAACACATAATG-AAGT
1 AAAAAAAACACATAATGCAAGT
68427875 AGATCATTAA
Statistics
Matches: 80, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
74 2 0.03
75 20 0.25
76 58 0.73
ACGTcount: A:0.53, C:0.12, G:0.10, T:0.25
Consensus pattern (75 bp):
AAAAAAAACACATAATGCAAGTCTTAAAAGATGCTAATGTATTAATACAAAACATTAAATAAAGA
CACATTCAAC
Found at i:68432527 original size:53 final size:54
Alignment explanation
Indices: 68432443--68432646 Score: 214
Period size: 53 Copynumber: 3.8 Consensus size: 54
68432433 TTTCCTTTTT
* * * *
68432443 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
68432496 AACTCACCAATGCCATGCCTTGGCATTGTCTTACATGGGA-CCTTTGCCTTATCG
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG
* * * * *
68432550 TAACTCATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAG
1 -AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
68432605 AACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATC
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
68432647 ATTATCTTGC
Statistics
Matches: 127, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.02
53 42 0.33
54 39 0.31
55 42 0.33
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:68432634 original size:54 final size:53
Alignment explanation
Indices: 68432456--68432646 Score: 222
Period size: 55 Copynumber: 3.5 Consensus size: 53
68432446 TTACCATTGC
* * * * *
68432456 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGC
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCATCAATGT
* * **
68432509 CATGCCTTGGCATTGTCTTACATGGGA-CCTTTGCCTTATCGTAACTCATCAATGT
1 CATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTAT-G-AACTCATCAATGT
* * *
68432564 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGT
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCATCAATGT
*
68432618 CATGCCTTGGCATGGTCTTACATGATATC
1 CATGCCTTGACATGGTCTTACATGATATC
68432647 ATTATCTTGC
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.02
53 31 0.27
54 39 0.34
55 42 0.36
56 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCATCAATGT
Found at i:68438273 original size:67 final size:68
Alignment explanation
Indices: 68438199--68438377 Score: 171
Period size: 67 Copynumber: 2.7 Consensus size: 68
68438189 CATCATGTGT
* * * *
68438199 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGT-G-ACACA-TG-CGTACACC
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCACATGCGTGGTAC-CAGTGAAGGACACC
68438260 ATGTAG
63 ATGTAG
* *
68438266 ACAAGAGAGCTACG-G-GATATATGTAGCTAGGTCACATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCACATGCGTGGTACCA-GTGAAGGACACCAT
68438329 GTAG
65 GTAG
* *
68438333 ACAAGAGAGCTACGAG--ATAAACTG--GCTAGGTCACATGGGTGGTAC
1 ACAAGAGAGCTACGAGACATATA-TGTAGCTAGGTCACATGCGTGGTAC
68438378 TAAGTGTTCA
Statistics
Matches: 96, Mismatches: 9, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
63 19 0.20
64 6 0.06
65 2 0.02
66 22 0.23
67 44 0.46
68 3 0.03
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.20
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCACATGCGTGGTACCAGTGAAGGACACCATG
TAG
Found at i:68441939 original size:53 final size:54
Alignment explanation
Indices: 68441871--68442074 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 54
68441861 TTTCCTTGTT
* * * * *
68441871 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* *
68441924 GAACTCACCAATGCCATGCCTT-AGCATCGTCTTACATGGGATCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGA-CATGGTCTTACATGGTATCTTTGCCTTATA
* * * * * *
68441978 GTAACTCATCAATGCCATGTCTTAACA-GGTCTTACATGATTTCTTTGCCATATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* * ** * *
68442032 GAACTTATCAATGCCATGCCTTGGTATAGTCTTACATGATATC
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
68442075 ATTATCTTAC
Statistics
Matches: 125, Mismatches: 21, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
52 1 0.01
53 64 0.51
54 38 0.30
55 21 0.17
56 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
Found at i:68442024 original size:54 final size:54
Alignment explanation
Indices: 68441882--68442049 Score: 205
Period size: 53 Copynumber: 3.1 Consensus size: 54
68441872 AACTTACCAT
* * * *
68441882 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGTCTTAACATGGTCTTACATGGTATCTTTGCCTTATAGAACTCATCAA
* * * *
68441935 TGCCATGCCTTAGCATCGTCTTACATGGGATCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTAACATGGTCTTACATGGTATCTTTGCCTTATAG-AACTCATCAA
* * * *
68441990 TGCCATGTCTTAACA-GGTCTTACATGATTTCTTTGCCATATAGAACTTATCAA
1 TGCCATGTCTTAACATGGTCTTACATGGTATCTTTGCCTTATAGAACTCATCAA
68442043 TGCCATG
1 TGCCATG
68442050 CCTTGGTATA
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 51 0.53
54 24 0.25
55 22 0.23
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
TGCCATGTCTTAACATGGTCTTACATGGTATCTTTGCCTTATAGAACTCATCAA
Found at i:68446175 original size:20 final size:20
Alignment explanation
Indices: 68446138--68446177 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
68446128 TAATTAAAAT
*
68446138 AATAATAACATATAATGAAA
1 AATAATAACAGATAATGAAA
68446158 AATAATAATCAGAT-ATGAAA
1 AATAATAA-CAGATAATGAAA
68446178 TATCAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.25
Consensus pattern (20 bp):
AATAATAACAGATAATGAAA
Found at i:68451116 original size:40 final size:40
Alignment explanation
Indices: 68450972--68451139 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
68450962 CGGAATATAA
*** * *
68450972 CCGGATATAATCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCATAATTGCCTTCGGGTCTTAGC
* *
68451012 CCGGATAGAATGACTC-GCATGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAT-AATTGCCTTCGGGTCTTAGC
** * * * *
68451052 CCGGATATAGCCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCATAATTGCCTTCGGGTCTTAGC
** * *
68451092 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCATAATTGCCTTCGGGTCTTAGC
68451132 CCGGATAT
1 CCGGATAT
68451140 CATTCAATTT
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
39 2 0.02
40 98 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACCAGCATAATTGCCTTCGGGTCTTAGC
Found at i:68451122 original size:80 final size:80
Alignment explanation
Indices: 68450988--68451139 Score: 209
Period size: 80 Copynumber: 1.9 Consensus size: 80
68450978 ATAATCATGT
* *
68450988 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCATGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCATGAATGCCTTCGGGGCTTAGCC
68451053 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** *
68451068 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCAT-AATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCATGAA-TGCCTTCGGGGCTTAG
68451131 CCCGGATAT
64 CCCGGATAT
68451140 CATTCAATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
79 3 0.05
80 60 0.95
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCATGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:68453710 original size:29 final size:29
Alignment explanation
Indices: 68453678--68453809 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
68453668 ATAGTGAATC
68453678 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
68453707 CGCACACTTAGCGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
68453737 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
68453766 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
68453795 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68453810 GTACAATTTT
Statistics
Matches: 99, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
29 71 0.72
30 28 0.28
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.36
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:68453819 original size:59 final size:59
Alignment explanation
Indices: 68453678--68453809 Score: 239
Period size: 59 Copynumber: 2.3 Consensus size: 59
68453668 ATAGTGAATC
*
68453678 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGCGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
68453737 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
68453795 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68453810 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 24 0.34
59 47 0.66
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.36
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:68458535 original size:27 final size:26
Alignment explanation
Indices: 68458505--68458584 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 26
68458495 CTCATATCTG
* *
68458505 TAGGCTAGTATTACTGAAATACCCTTA
1 TAGG-TAGAATTACTAAAATACCCTTA
*
68458532 TAGGGTAGAATTACTAAAATGCCCCTGTA
1 TA-GGTAGAATTACTAAAAT-ACCCT-TA
68458561 -AGGTAGAATTACTAAAATACCCTT
1 TAGGTAGAATTACTAAAATACCCTT
68458585 GGTTTACAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 32 0.70
28 7 0.15
29 2 0.04
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.30
Consensus pattern (26 bp):
TAGGTAGAATTACTAAAATACCCTTA
Found at i:68458625 original size:54 final size:53
Alignment explanation
Indices: 68458567--68458958 Score: 312
Period size: 54 Copynumber: 7.3 Consensus size: 53
68458557 TGTAAGGTAG
* * * * * * *
68458567 AATTACTAAAATACCCTTGGTTTACAAAGTTACCAAAATACCCTCGATTAGCAA
1 AATTACCAAAATACCCCTGATTTGCAAA-TTACCGAAATACCCTCGATTTGTAA
* *
68458621 AATTACCAAAATACCCCT-AGTTTGTGAAATTACCGAAATACCCTTGATTTGTAA
1 AATTACCAAAATACCCCTGA-TTTG-CAAATTACCGAAATACCCTCGATTTGTAA
* * * *
68458675 AATTA-CAGAAATACCCCTAATTTGTAAAATTACTGAAATACCCTCGACTTGTAA
1 AATTACCA-AAATACCCCTGATTTG-CAAATTACCGAAATACCCTCGATTTGTAA
** * *
68458729 AATTACTGAAA-ACCCCT-ATTT-CTAAAATTACCAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCCTGATTTGC--AAATTACCGAAATACCCTCGATTTGTAA
* * * * *
68458781 ATTTACCGAAATA-CTCTCGACTTGTAAAATTACCGAAATACCCTCGATTTGTAA
1 AATTACCAAAATACCCCT-GATTTG-CAAATTACCGAAATACCCTCGATTTGTAA
* * *
68458835 AATTACCAAAATACCCCTGATTTGGAAAGTTACCGAAATACCCTTGATTTGGAA
1 AATTACCAAAATACCCCTGATTTGCAAA-TTACCGAAATACCCTCGATTTGTAA
** * ** * * *
68458889 AATTA-CAGAAATACCATTGGTTTGCAAAATTAAAGAAATACCCTTGGTTTGTAG
1 AATTACCA-AAATACCCCTGATTTGC-AAATTACCGAAATACCCTCGATTTGTAA
* *
68458943 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
68458959 TTGTAGGGTG
Statistics
Matches: 277, Mismatches: 44, Indels: 34
0.78 0.12 0.10
Matches are distributed among these distances:
52 42 0.15
53 14 0.05
54 209 0.75
55 12 0.04
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (53 bp):
AATTACCAAAATACCCCTGATTTGCAAATTACCGAAATACCCTCGATTTGTAA
Found at i:68458813 original size:160 final size:160
Alignment explanation
Indices: 68458596--68458899 Score: 416
Period size: 160 Copynumber: 1.9 Consensus size: 160
68458586 GTTTACAAAG
* * *
68458596 TTACCAAAATACCCTCGATTAGCAAAATTACCAAAATACCCCTAGTTTGTGAAATTACCGAAATA
1 TTACCAAAATACCCTCGATTAGCAAAATTACCAAAATACCCCGAGCTTGTAAAATTACCGAAATA
* * *
68458661 CCCTTGATTTGTAAAATTA-CAGAAATACCCCTAATTTGTAAAATTACTGAAATACCCTCGACTT
66 CCCTCGATTTGTAAAATTACCA-AAATACCCCTAATTTGGAAAATTACCGAAATACCCTCGACTT
* *
68458725 GTAAAATTACTGAAAACCCCTATTTCTAAAA
130 GGAAAATTACAGAAAACCCCTATTTCTAAAA
* * * *
68458756 TTACCAAAATACCCTCGACTT-GTAAATTTACCGAAATACTCTCGA-CTTGTAAAATTACCGAAA
1 TTACCAAAATACCCTCGA-TTAGCAAAATTACCAAAATAC-CCCGAGCTTGTAAAATTACCGAAA
* * * *
68458819 TACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTGGAAAGTTACCGAAATACCCTTGATT
64 TACCCTCGATTTGTAAAATTACCAAAATACCCCTAATTTGGAAAATTACCGAAATACCCTCGACT
68458884 TGGAAAATTACAGAAA
129 TGGAAAATTACAGAAA
68458900 TACCATTGGT
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
160 118 0.94
161 7 0.06
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (160 bp):
TTACCAAAATACCCTCGATTAGCAAAATTACCAAAATACCCCGAGCTTGTAAAATTACCGAAATA
CCCTCGATTTGTAAAATTACCAAAATACCCCTAATTTGGAAAATTACCGAAATACCCTCGACTTG
GAAAATTACAGAAAACCCCTATTTCTAAAA
Found at i:68458912 original size:27 final size:27
Alignment explanation
Indices: 68458567--68458939 Score: 251
Period size: 27 Copynumber: 13.9 Consensus size: 27
68458557 TGTAAGGTAG
* **
68458567 AATTACTA-AAATACCCTTGGTTTACAA
1 AATTAC-AGAAATACCCTTGATTTGGAA
* * * *
68458594 AGTTACCA-AAATACCCTCGATTAGCAA
1 AATTA-CAGAAATACCCTTGATTTGGAA
*
68458621 AATTACCA-AAATACCCCT-AGTTTGTG-A
1 AATTA-CAGAAATACCCTTGA-TTTG-GAA
* *
68458648 AATTACCGAAATACCCTTGATTTGTAA
1 AATTACAGAAATACCCTTGATTTGGAA
* * *
68458675 AATTACAGAAATACCCCTAATTTGTAA
1 AATTACAGAAATACCCTTGATTTGGAA
* * * *
68458702 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACAGAAATACCCTTGATTTGGAA
* * **
68458729 AATTACTGAAA-ACCCCT-ATTTCTAA
1 AATTACAGAAATACCCTTGATTTGGAA
* * *
68458754 AATTACCA-AAATACCCTCGACTTGTAA
1 AATTA-CAGAAATACCCTTGATTTGGAA
* * * * * *
68458781 ATTTACCGAAATACTCTCGACTTGTAA
1 AATTACAGAAATACCCTTGATTTGGAA
* * *
68458808 AATTACCGAAATACCCTCGATTTGTAA
1 AATTACAGAAATACCCTTGATTTGGAA
*
68458835 AATTACCA-AAATACCCCTGATTTGGAA
1 AATTA-CAGAAATACCCTTGATTTGGAA
* *
68458862 AGTTACCGAAATACCCTTGATTTGGAA
1 AATTACAGAAATACCCTTGATTTGGAA
* * *
68458889 AATTACAGAAATACCATTGGTTTGCAA
1 AATTACAGAAATACCCTTGATTTGGAA
* *
68458916 AATTAAAGAAATACCCTTGGTTTG
1 AATTACAGAAATACCCTTGATTTG
68458940 TAGATTTACC
Statistics
Matches: 284, Mismatches: 50, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
25 14 0.05
26 13 0.05
27 254 0.89
28 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
AATTACAGAAATACCCTTGATTTGGAA
Found at i:68458931 original size:81 final size:81
Alignment explanation
Indices: 68458575--68458920 Score: 355
Period size: 81 Copynumber: 4.3 Consensus size: 81
68458565 AGAATTACTA
* * * * * *
68458575 AAATACCCTTGGTTTACAAAGTTACCAAAATA-CCCTCGATTAGCAAAATTACCAAAATACCC-C
1 AAATACCCTTGATTTGCAAAATTACCAAAATACCCCT-GATTTGTAAAATTACCGAAATACCCTC
* * *
68458638 TAGTTTGTGAAATTACCG
65 GA-CTTGTAAAATTACCG
* * *
68458656 AAATACCCTTGATTTGTAAAATTA-CAGAAATACCCCTAATTTGTAAAATTACTGAAATACCCTC
1 AAATACCCTTGATTTGCAAAATTACCA-AAATACCCCTGATTTGTAAAATTACCGAAATACCCTC
*
68458720 GACTTGTAAAATTACTG
65 GACTTGTAAAATTACCG
* * * *
68458737 AAA-ACCCCT-ATTT-CTAAAATTACCAAAATA-CCCTCGACTTGTAAATTTACCGAAATACTCT
1 AAATACCCTTGATTTGC-AAAATTACCAAAATACCCCT-GATTTGTAAAATTACCGAAATACCCT
68458798 CGACTTGTAAAATTACCG
64 CGACTTGTAAAATTACCG
* * * * *
68458816 AAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTGGAAAGTTACCGAAATACCCTTG
1 AAATACCCTTGATTTGCAAAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTCG
* * *
68458881 ATTTGGAAAATTACAG
66 ACTTGTAAAATTACCG
* *
68458897 AAATACCATTGGTTTGCAAAATTA
1 AAATACCCTTGATTTGCAAAATTA
68458921 AAGAAATACC
Statistics
Matches: 219, Mismatches: 36, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
78 4 0.02
79 57 0.26
80 13 0.06
81 135 0.62
82 10 0.05
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (81 bp):
AAATACCCTTGATTTGCAAAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTCG
ACTTGTAAAATTACCG
Found at i:68458949 original size:81 final size:81
Alignment explanation
Indices: 68458575--68458959 Score: 354
Period size: 81 Copynumber: 4.8 Consensus size: 81
68458565 AGAATTACTA
* * * * * * *
68458575 AAATACCCTTGGTTTACAAAGTTACCAAAATA-CCCTCGATTAGCAAAATTACCAAAATACCC-C
1 AAATACCCTTGATTTGCAAAATTACCAAAATACCCCT-GATTTGTAAATTTACCGAAATACCCTC
* * *
68458638 TAGTTTGTGAAATTACCG
65 GA-CTTGTAAAATTACCG
* * * *
68458656 AAATACCCTTGATTTGTAAAATTA-CAGAAATACCCCTAATTTGTAAAATTACTGAAATACCCTC
1 AAATACCCTTGATTTGCAAAATTACCA-AAATACCCCTGATTTGTAAATTTACCGAAATACCCTC
*
68458720 GACTTGTAAAATTACTG
65 GACTTGTAAAATTACCG
* * *
68458737 AAA-ACCCCT-ATTT-CTAAAATTACCAAAATA-CCCTCGACTTGTAAATTTACCGAAATACTCT
1 AAATACCCTTGATTTGC-AAAATTACCAAAATACCCCT-GATTTGTAAATTTACCGAAATACCCT
68458798 CGACTTGTAAAATTACCG
64 CGACTTGTAAAATTACCG
* * * * *
68458816 AAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTGGAAAGTTACCGAAATACCCTTG
1 AAATACCCTTGATTTGCAAAATTACCAAAATACCCCTGATTTGTAAATTTACCGAAATACCCTCG
* * *
68458881 ATTTGGAAAATTACAG
66 ACTTGTAAAATTACCG
* * * * * * * *
68458897 AAATACCATTGGTTTGCAAAATTA-AAGAAATACCCTTGGTTTGTAGATTTACCAAAACACCCT
1 AAATACCCTTGATTTGCAAAATTACCA-AAATACCCCTGATTTGTAAATTTACCGAAATACCCT
68458960 TGTAGGGTGA
Statistics
Matches: 249, Mismatches: 44, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
78 4 0.02
79 57 0.23
80 14 0.06
81 164 0.66
82 10 0.04
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.29
Consensus pattern (81 bp):
AAATACCCTTGATTTGCAAAATTACCAAAATACCCCTGATTTGTAAATTTACCGAAATACCCTCG
ACTTGTAAAATTACCG
Found at i:68459244 original size:41 final size:41
Alignment explanation
Indices: 68459199--68459323 Score: 135
Period size: 41 Copynumber: 3.0 Consensus size: 41
68459189 GAAGGAAGAA
68459199 ATTGAGGATCGCATGGTTGCCTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCCTGACGACCGTGGATCCACCG
* * **
68459240 ATTGAGGATCGCAAGGTT-CCTTGACAACTATGGATCCACCG
1 ATTGAGGATCGCATGGTTGCC-TGACGACCGTGGATCCACCG
* * * * * * *
68459281 ATTAAGGATTGCATAGTTGCTTGATGACCGTGAATCTACCG
1 ATTGAGGATCGCATGGTTGCCTGACGACCGTGGATCCACCG
68459322 AT
1 AT
68459324 GGCTTTTAAA
Statistics
Matches: 67, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
40 2 0.03
41 64 0.96
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCCTGACGACCGTGGATCCACCG
Found at i:68463001 original size:46 final size:46
Alignment explanation
Indices: 68462951--68463123 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
68462941 TGGTTGAGCA
68462951 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
68462997 TCCGAACTCGTTGAGTTGAGTCTGAGTTCA-TGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
68463042 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68463090 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68463124 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68463107 original size:93 final size:93
Alignment explanation
Indices: 68462948--68463119 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
68462938 GGATGGTTGA
* * *
68462948 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
68463013 TGAGTCTGAGTTCATGAAATGTAACTAG
66 TGAGTCCGAGTTCATGAAATGTAACTAG
*
68463041 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
68463106 TGAGTCCGAGTTCA
66 TGAGTCCGAGTTCA
68463120 CTTAGGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCATGAAATGTAACTAG
Found at i:68466540 original size:13 final size:13
Alignment explanation
Indices: 68466522--68466563 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
68466512 ACAGATAATA
68466522 AAATCAATTAGTC
1 AAATCAATTAGTC
*
68466535 AAATCAATTAAT-
1 AAATCAATTAGTC
*
68466547 AGAATCAATTGGTC
1 A-AATCAATTAGTC
68466561 AAA
1 AAA
68466564 CCAGCAATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 1 0.04
13 22 0.92
14 1 0.04
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.29
Consensus pattern (13 bp):
AAATCAATTAGTC
Found at i:68467584 original size:39 final size:40
Alignment explanation
Indices: 68467536--68467613 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 40
68467526 ATTTTGAAAT
* *
68467536 TTTAATTAAATTATTATAGATTAAAAT-AATTTAAAATTA
1 TTTAATTAAATAATTATAAATTAAAATCAATTTAAAATTA
* * *
68467575 TTTATTTAAATAATTCTAAATTAAAATCAATTTTAAATT
1 TTTAATTAAATAATTATAAATTAAAATCAATTTAAAATT
68467614 GAGATAATCT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 23 0.70
40 10 0.30
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (40 bp):
TTTAATTAAATAATTATAAATTAAAATCAATTTAAAATTA
Found at i:68467611 original size:17 final size:16
Alignment explanation
Indices: 68467582--68467628 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
68467572 TTATTTATTT
68467582 AAATAATTCTAAATTA
1 AAATAATTCTAAATTA
* *
68467598 AAATCAATTTTAAATTG
1 AAAT-AATTCTAAATTA
*
68467615 AGATAA-TCTAAATT
1 AAATAATTCTAAATT
68467629 TGAATCAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 7 0.27
16 6 0.23
17 13 0.50
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.38
Consensus pattern (16 bp):
AAATAATTCTAAATTA
Found at i:68469242 original size:2 final size:2
Alignment explanation
Indices: 68469235--68469268 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
68469225 GAATCATACT
68469235 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68469269 ATTTTTAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:68470065 original size:18 final size:18
Alignment explanation
Indices: 68470042--68470076 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68470032 TACCGTAACT
*
68470042 CTTTTTATTGTGCAAATC
1 CTTTTTAATGTGCAAATC
*
68470060 CTTTTTAATGTTCAAAT
1 CTTTTTAATGTGCAAAT
68470077 TTAAAATTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.14, G:0.09, T:0.51
Consensus pattern (18 bp):
CTTTTTAATGTGCAAATC
Found at i:68470476 original size:25 final size:25
Alignment explanation
Indices: 68470448--68470497 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
68470438 ATTATAAATC
68470448 AATAATAAAATTATTATTTTATTTA
1 AATAATAAAATTATTATTTTATTTA
* *
68470473 AATATTTAAATTATTATTTTATTTA
1 AATAATAAAATTATTATTTTATTTA
68470498 TATATTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
AATAATAAAATTATTATTTTATTTA
Found at i:68470502 original size:25 final size:25
Alignment explanation
Indices: 68470455--68470503 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
68470445 ATCAATAATA
68470455 AAATTATTATTTTATTTAAATATTT
1 AAATTATTATTTTATTTAAATATTT
*
68470480 AAATTATTATTTTATTTATATATT
1 AAATTATTATTTTATTTAAATATT
68470504 AATATAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
AAATTATTATTTTATTTAAATATTT
Found at i:68472243 original size:39 final size:39
Alignment explanation
Indices: 68472159--68472311 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
68472149 TATGGTAACC
** * *
68472159 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
68472199 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
68472238 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
68472277 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
68472312 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:68472284 original size:78 final size:79
Alignment explanation
Indices: 68472128--68472310 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
68472118 TCGTTCAAAC
* * **
68472128 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
68472193 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
68472208 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
68472272 CAATTTGCACAATT
66 CAATTTGCACAATT
68472286 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
68472311 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:68480301 original size:39 final size:39
Alignment explanation
Indices: 68480217--68480369 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
68480207 TATGGTAACC
** * *
68480217 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
68480257 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
68480296 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
68480335 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
68480370 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:68480342 original size:78 final size:79
Alignment explanation
Indices: 68480186--68480368 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
68480176 TCGTTCAAAC
* * **
68480186 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
68480251 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
68480266 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
68480330 CAATTTGCACAATT
66 CAATTTGCACAATT
68480344 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
68480369 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:68483540 original size:39 final size:39
Alignment explanation
Indices: 68483456--68483608 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
68483446 TATGGTAACC
** * *
68483456 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
68483496 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
68483535 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
68483574 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
68483609 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:68483581 original size:78 final size:79
Alignment explanation
Indices: 68483425--68483607 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
68483415 TCGTTCAAAC
* * **
68483425 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
68483490 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
68483505 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
68483569 CAATTTGCACAATT
66 CAATTTGCACAATT
68483583 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
68483608 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:68491593 original size:39 final size:39
Alignment explanation
Indices: 68491509--68491661 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
68491499 TATGGTAACC
** * *
68491509 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
68491549 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
68491588 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
68491627 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
68491662 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:68491634 original size:78 final size:79
Alignment explanation
Indices: 68491478--68491660 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
68491468 TCGTTCAAAC
* * **
68491478 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
68491543 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
68491558 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
68491622 CAATTTGCACAATT
66 CAATTTGCACAATT
68491636 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
68491661 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:68494858 original size:20 final size:20
Alignment explanation
Indices: 68494833--68494877 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
68494823 AGGGACTAAA
* *
68494833 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
68494853 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
68494873 ATGAA
1 ATGAA
68494878 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:68501709 original size:46 final size:46
Alignment explanation
Indices: 68501659--68501831 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
68501649 TGGTTGAGCA
*
68501659 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
68501705 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
68501752 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
68501798 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68501832 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:68501815 original size:93 final size:93
Alignment explanation
Indices: 68501656--68501826 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
68501646 GGATGGTTGA
* *
68501656 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68501721 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
68501749 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68501814 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68501827 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68502092 original size:19 final size:20
Alignment explanation
Indices: 68502055--68502092 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68502045 ATAAGGTGGT
68502055 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
68502075 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
68502093 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:68509280 original size:46 final size:46
Alignment explanation
Indices: 68509230--68509402 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
68509220 TGGTTGAGCA
*
68509230 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
68509276 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
68509323 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
68509369 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68509403 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:68509386 original size:93 final size:93
Alignment explanation
Indices: 68509227--68509397 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
68509217 GGATGGTTGA
* *
68509227 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68509292 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
68509320 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68509385 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68509398 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68509664 original size:19 final size:20
Alignment explanation
Indices: 68509627--68509664 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68509617 ATAAGGTGGT
68509627 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
68509647 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
68509665 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:68510885 original size:27 final size:27
Alignment explanation
Indices: 68510846--68510926 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
68510836 AGCTTGGCTG
* *
68510846 CCAGAACT-GATATTGTGACAGAGTCA
1 CCAGAATTAGATATTGTGACAGAGCCA
*
68510872 CCAG-ATATAGATATTGTGGCAGAGCCA
1 CCAGAAT-TAGATATTGTGACAGAGCCA
* * *
68510899 CCAGAATTAGATAATGTGGCAAAGCCA
1 CCAGAATTAGATATTGTGACAGAGCCA
68510926 C
1 C
68510927 ATAACAGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.02
26 5 0.11
27 39 0.83
28 2 0.04
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (27 bp):
CCAGAATTAGATATTGTGACAGAGCCA
Found at i:68511224 original size:27 final size:26
Alignment explanation
Indices: 68511159--68511241 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
68511149 TTGATCGGTC
* * *
68511159 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
* *
68511185 ATACAGATATTGTGGTAGAGCCACTAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
68511212 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
68511239 AAC
1 AAC
68511242 GCTTCCTCCA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 8 0.17
27 39 0.83
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:68511496 original size:27 final size:28
Alignment explanation
Indices: 68511466--68511823 Score: 138
Period size: 27 Copynumber: 13.2 Consensus size: 28
68511456 GGGTAAAATG
68511466 GTAATTTC-ACCCCACAAGGGTATCTCA
1 GTAATTTCTACCCCACAAGGGTATCTCA
* * *
68511493 GTAA-TTCTACCCTACAGGGGTATTTCA
1 GTAATTTCTACCCCACAAGGGTATCTCA
* * ** * * *
68511520 ATAA-TTCTACCCTACTGGGGTGTTTCG
1 GTAATTTCTACCCCACAAGGGTATCTCA
** *
68511547 GTAA-TTCTACCTTACAAGGGTATTTCA
1 GTAATTTCTACCCCACAAGGGTATCTCA
* * ** * * *
68511574 ATAA-TTCTATCTTACAGGGGTATTTTA
1 GTAATTTCTACCCCACAAGGGTATCTCA
* ** *
68511601 ATAA-TTCTACCTTAC-AGGCGTATTTCA
1 GTAATTTCTACCCCACAAGG-GTATCTCA
* * * *
68511628 GTAA-TTCTACCCTACAGGGGTATTTCG
1 GTAATTTCTACCCCACAAGGGTATCTCA
* * * *
68511655 GT-ATTTTTACCCTACAGGGGTATTTC-
1 GTAATTTCTACCCCACAAGGGTATCTCA
* * *
68511681 G-ATATTTCTACCCTACAAGGGTATTTCG
1 GTA-ATTTCTACCCCACAAGGGTATCTCA
* * *
68511709 GTAA-TTCTACCCTACAAGGGTATTTCG
1 GTAATTTCTACCCCACAAGGGTATCTCA
* * * *
68511736 GTAA-TTCTACCCTA-TAGTGGTATTTTA
1 GTAATTTCTACCCCACAAG-GGTATCTCA
* *
68511763 GTAA-TTCTACCCTACAAGGGTATTTCA
1 GTAATTTCTACCCCACAAGGGTATCTCA
** *
68511790 GTAATTT-TA-CAAATCAAGGGTATTTCA
1 GTAATTTCTACCCCA-CAAGGGTATCTCA
68511817 GTAATTT
1 GTAATTT
68511824 TGCCAACTGA
Statistics
Matches: 285, Mismatches: 34, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
26 11 0.04
27 265 0.93
28 8 0.03
29 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (28 bp):
GTAATTTCTACCCCACAAGGGTATCTCA
Found at i:68511525 original size:54 final size:54
Alignment explanation
Indices: 68511474--68511822 Score: 371
Period size: 54 Copynumber: 6.5 Consensus size: 54
68511464 TGGTAATTTC
* * *
68511474 ACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCT
1 ACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAATAATTCT
** * * *
68511528 ACCCTACTGGGGTGTTTCGGTAATTCTACCTTACAAGGGTATTTCAATAATTCT
1 ACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAATAATTCT
* * * * * * *
68511582 ATCTTACAGGGGTATTTTAATAATTCTACCTTAC-AGGCGTATTTCAGTAATTCT
1 ACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGG-GTATTTCAATAATTCT
* * * * * * *
68511636 ACCCTACAGGGGTATTTCGGTATTTTTACCCTACAGGGGTATTTCGATATTTCT
1 ACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAATAATTCT
* **
68511690 ACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCT
1 ACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAATAATTCT
* * * *
68511744 ACCCTA-TAGTGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGTAATTTT
1 ACCCTACAAG-GGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAATAATTCT
**
68511798 A-CAAATCAAGGGTATTTCAGTAATT
1 ACCCTA-CAAGGGTATTTCAGTAATT
68511823 TTGCCAACTG
Statistics
Matches: 247, Mismatches: 43, Indels: 10
0.82 0.14 0.03
Matches are distributed among these distances:
53 7 0.03
54 236 0.96
55 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (54 bp):
ACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAATAATTCT
Found at i:68511565 original size:81 final size:81
Alignment explanation
Indices: 68511466--68511822 Score: 423
Period size: 81 Copynumber: 4.4 Consensus size: 81
68511456 GGGTAAAATG
* *
68511466 GTAATT-TCACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
1 GTAATTCT-ACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
** * *
68511530 CCTACTGGGGTGTTTCG
65 CCTACAAGGGTATTTCA
* * * * *
68511547 GTAATTCTACCTTACAAGGGTATTTCAATAATTCTATCTTACAGGGGTATTTTAATAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
*
68511612 TTAC-AGGCGTATTTCA
66 CTACAAGG-GTATTTCA
* * * * * *
68511628 GTAATTCTACCCTACAGGGGTATTTCGGTATTTTTACCCTACAGGGGTATTTCGATATTTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
*
68511693 CTACAAGGGTATTTCG
66 CTACAAGGGTATTTCA
* * * * *
68511709 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGTGGTATTTTAGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
68511774 CTACAAGGGTATTTCA
66 CTACAAGGGTATTTCA
* **
68511790 GTAATTTTA-CAAATCAAGGGTATTTCAGTAATT
1 GTAATTCTACCCTA-CAAGGGTATTTCAGTAATT
68511823 TTGCCAACTG
Statistics
Matches: 234, Mismatches: 38, Indels: 8
0.84 0.14 0.03
Matches are distributed among these distances:
80 4 0.02
81 226 0.97
82 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
CTACAAGGGTATTTCA
Found at i:68511824 original size:27 final size:27
Alignment explanation
Indices: 68511779--68512038 Score: 205
Period size: 27 Copynumber: 9.7 Consensus size: 27
68511769 CTACCCTACA
*
68511779 AGGGTATTTCAGTAATTTTACAAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
68511806 AGGGTATTTCAGTAATTTTGCCAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* *
68511833 AGGGTATTTCGGTAATTTTAC-AAGCTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
68511860 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
68511886 ACGGTATTTCGGTAATTTTATAAACCTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* *
68511914 -GGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
68511940 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
** ** * * *
68511966 ACAGTATTTTGGTAAATTTATAGATC-
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
68511992 AGGGGTACTTT-GGTAATTTTACAACTAG
1 A-GGGTA-TTTCAGTAATTTTACAAATCG
*
68512020 -GGGTATTTTAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
68512039 GTAAATTAAA
Statistics
Matches: 189, Mismatches: 32, Indels: 25
0.77 0.13 0.10
Matches are distributed among these distances:
25 3 0.02
26 60 0.32
27 119 0.63
28 7 0.04
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:68511839 original size:81 final size:80
Alignment explanation
Indices: 68511479--68511963 Score: 302
Period size: 81 Copynumber: 6.0 Consensus size: 80
68511469 ATTTCACCCC
* * * * * * * ** *
68511479 ACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACTGGGGTGTT
1 ACAAGGGTATTTCGGTAATTTTA-CCAACTGGGGTATTTTAGTAATTCTACCCTACAAGGGTATT
* * **
68511544 TCGGTAATTCTACCTT
65 TCAGTAATTTTACAAT
** * ** * * *
68511560 ACAAGGGTATTTCAATAATTCTATCTTACAGGGGTATTTTAATAATTCTACCTTAC-AGGCGTAT
1 ACAAGGGTATTTCGGTAATTTTA-CCAACTGGGGTATTTTAGTAATTCTACCCTACAAGG-GTAT
* **
68511624 TTCAGTAATTCTACCCT
64 TTCAGTAATTTTACAAT
* * * * * *
68511641 ACAGGGGTATTTCGGTATTTTTACCCTACAGGGGTA-TTTCGATATTTCTACCCTACAAGGGTAT
1 ACAAGGGTATTTCGGTAATTTTA-CCAACTGGGGTATTTTAG-TAATTCTACCCTACAAGGGTAT
* * **
68511705 TTCGGTAATTCTACCCT
64 TTCAGTAATTTTACAAT
* * *
68511722 ACAAGGGTATTTCGGTAATTCTACCCTA-TAGTGGTATTTTAGTAATTCTACCCTACAAGGGTAT
1 ACAAGGGTATTTCGGTAATTTTA-CCAACT-GGGGTATTTTAGTAATTCTACCCTACAAGGGTAT
68511786 TTCAGTAATTTTACAA-
64 TTCAGTAATTTTACAAT
* * ** * * *
68511802 ATCAAGGGTATTTCAGTAATTTTGCCAACTGAGGGTATTTCGGTAATTTTA--CAAGCTGAGGGT
1 A-CAAGGGTATTTCGGTAATTTTACCAACTG-GGGTATTTTAGTAATTCTACCCTA-C-AAGGGT
68511865 ATTTCAGTAATTTTACAAT
62 ATTTCAGTAATTTTACAAT
* * ** * * * ** *
68511884 -CGACGGTATTTCGGTAATTTTATAAACCTGGGGTACTTTGGTAATTTTACAAGT-CGAGGGTAT
1 ACAAGGGTATTTCGGTAATTTTACCAA-CTGGGGTATTTTAGTAATTCTAC-CCTACAAGGGTAT
68511947 TTCAGTAATTTTACAAT
64 TTCAGTAATTTTACAAT
68511964 CGACAGTATT
Statistics
Matches: 336, Mismatches: 53, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
79 2 0.01
80 73 0.22
81 254 0.76
82 7 0.02
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.37
Consensus pattern (80 bp):
ACAAGGGTATTTCGGTAATTTTACCAACTGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTT
CAGTAATTTTACAAT
Found at i:68511930 original size:80 final size:79
Alignment explanation
Indices: 68511779--68512038 Score: 321
Period size: 80 Copynumber: 3.3 Consensus size: 79
68511769 CTACCCTACA
* * * ***
68511779 AGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCCAACTGAGGGTA-TTTC
1 AGGGTATTTCAGTAATTTTAC-AATCGACGGTATTTCGGTAATTTTATAAACTG-GGGTACTTT-
68511843 GGTAATTTTACAAGCTG
63 GGTAATTTTACAAGCTG
68511860 AGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAACCTGGGGTACTTTGG
1 AGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAA-CTGGGGTACTTTGG
68511925 TAATTTTACAAG-TCG
65 TAATTTTACAAGCT-G
* * * * *
68511940 AGGGTATTTCAGTAATTTTACAATCGACAGTATTTTGGTAAATTTATAGATCAGGGGTACTTTGG
1 AGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATA-AACTGGGGTACTTTGG
68512005 TAATTTTACAA-CT-
65 TAATTTTACAAGCTG
*
68512018 AGGGGTATTTTAGTAATTTTA
1 A-GGGTATTTCAGTAATTTTA
68512039 GTAAATTAAA
Statistics
Matches: 161, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
78 1 0.01
79 19 0.12
80 113 0.70
81 28 0.17
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (79 bp):
AGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAACTGGGGTACTTTGGT
AATTTTACAAGCTG
Found at i:68511984 original size:54 final size:53
Alignment explanation
Indices: 68511779--68512038 Score: 214
Period size: 53 Copynumber: 4.9 Consensus size: 53
68511769 CTACCCTACA
* *
68511779 AGGGTATTTCAGTAATTTTACAAATC-AAGGGTATTTCAGTAATTTTGCCAA-CTG
1 AGGGTATTTCAGTAATTTTAC-AATCTGAGGGTATTTCAGTAATTTT-ACAATC-G
* *
68511833 AGGGTATTTCGGTAATTTTACAAGCTGAGGGTATTTCAGTAATTTTACAATCG
1 AGGGTATTTCAGTAATTTTACAATCTGAGGGTATTTCAGTAATTTTACAATCG
* * * * *
68511886 ACGGTATTTCGGTAATTTTATAAACCTG-GGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTATTTCAGTAATTTTA-CAATCTGAGGGTA-TTTCAGTAATTTTACAA-TCG
** ** * *
68511940 AGGGTATTTCAGTAATTTTACAATC-GACAGTATTTTGGTAAATTTATAGATC-
1 AGGGTATTTCAGTAATTTTACAATCTGAGGGTATTTCAGTAATTTTACA-ATCG
* *
68511992 AGGGGTACTTT-GGTAATTTTACAA-CT-AGGGGTATTTTAGTAATTTTA
1 A-GGGTA-TTTCAGTAATTTTACAATCTGA-GGGTATTTCAGTAATTTTA
68512039 GTAAATTAAA
Statistics
Matches: 173, Mismatches: 21, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
52 7 0.04
53 93 0.54
54 73 0.42
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (53 bp):
AGGGTATTTCAGTAATTTTACAATCTGAGGGTATTTCAGTAATTTTACAATCG
Found at i:68514270 original size:27 final size:27
Alignment explanation
Indices: 68514231--68514311 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
68514221 AGCATGACTG
* *
68514231 CCAGAACT-GATATTGTGACAGAGTCA
1 CCAGAATTAGATATTGTGACAGAGCCA
**
68514257 CCAG-ATATAGATATTGTGGTAGAGCCA
1 CCAGAAT-TAGATATTGTGACAGAGCCA
* * *
68514284 CCAGAATTAGATAATGTGGCAAAGCCA
1 CCAGAATTAGATATTGTGACAGAGCCA
68514311 C
1 C
68514312 TTAACAGAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.02
26 5 0.11
27 37 0.82
28 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (27 bp):
CCAGAATTAGATATTGTGACAGAGCCA
Found at i:68514495 original size:98 final size:98
Alignment explanation
Indices: 68514333--68514538 Score: 349
Period size: 98 Copynumber: 2.1 Consensus size: 98
68514323 CGTGGCACAA
*
68514333 AGCCATCGATAACGGGTCTATAATCAGCACGAAGCCCACAATATCGATACGAAGCCCACAATAAC
1 AGCCATCGATAACGGGTCTATAATCAGCACGAAGCCCACAATATCGATACAAAGCCCACAATAAC
* * *
68514398 GGCATACAGCCTTCGGTAACATGATCGGCACTC
66 GGCACACAACCTTCGGTAACATGATCGACACTC
* * *
68514431 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACAAAGCCCACAATAAC
1 AGCCATCGATAACGGGTCTATAATCAGCACGAAGCCCACAATATCGATACAAAGCCCACAATAAC
68514496 GGCACACAACCTTCGGTAACATGATCGACACTC
66 GGCACACAACCTTCGGTAACATGATCGACACTC
68514529 AGCCATCGAT
1 AGCCATCGAT
68514539 CGGTCAACAG
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 100 1.00
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.18
Consensus pattern (98 bp):
AGCCATCGATAACGGGTCTATAATCAGCACGAAGCCCACAATATCGATACAAAGCCCACAATAAC
GGCACACAACCTTCGGTAACATGATCGACACTC
Found at i:68514626 original size:27 final size:26
Alignment explanation
Indices: 68514544--68514626 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
68514534 TCGATCGGTC
* *
68514544 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGGCAAAGCCACCAG
* * **
68514570 ATACAGATATTGTGGTAGAGCCACTGG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
68514597 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAAAGCCACCAG
68514624 AAC
1 AAC
68514627 GCTTCCTCCA
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
26 8 0.18
27 37 0.82
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:68514882 original size:27 final size:26
Alignment explanation
Indices: 68514852--68515227 Score: 309
Period size: 27 Copynumber: 14.2 Consensus size: 26
68514842 GGTAAAATGG
* * *
68514852 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTC-A
*
68514879 TAATTCTACCTTACAAGGGTATTTCA
1 TAATTCTACCCTACAAGGGTATTTCA
* *
68514905 GTAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTC-A
*
68514933 TAATTCTACCTTACAAGGGTATTTCA
1 TAATTCTACCCTACAAGGGTATTTCA
* *
68514959 GTAATTCTACCCTATAGGGGTATTTCA
1 -TAATTCTACCCTACAAGGGTATTTCA
68514986 GTAATTCTACCCTAC-AGGCGTATTTCAA
1 -TAATTCTACCCTACAAGG-GTATTTC-A
* * *
68515014 TAAATCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTC-A
*
68515041 TATTTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTC-A
* * *
68515068 TAATT-T----TAC-GGGGGATTTTA
1 TAATTCTACCCTACAAGGGTATTTCA
** *
68515088 GTAATTCTACCCTACTGGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTC-A
* *
68515116 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTC-A
* * *
68515143 TAATTCTACCTTATAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTC-A
* * *
68515170 TAATTCTATCCTA-TAGTGGTATTTTA
1 TAATTCTACCCTACAAG-GGTATTTCA
68515196 GTAATTCTACCCTACAAGGGTATTTCA
1 -TAATTCTACCCTACAAGGGTATTTCA
68515223 GTAAT
1 -TAAT
68515228 GTTACAAATC
Statistics
Matches: 287, Mismatches: 45, Indels: 34
0.78 0.12 0.09
Matches are distributed among these distances:
20 1 0.00
21 12 0.04
22 4 0.01
26 9 0.03
27 256 0.89
28 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (26 bp):
TAATTCTACCCTACAAGGGTATTTCA
Found at i:68514909 original size:54 final size:54
Alignment explanation
Indices: 68514851--68515227 Score: 396
Period size: 54 Copynumber: 7.1 Consensus size: 54
68514841 GGGTAAAATG
* * * * *
68514851 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
* *
68514905 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
*
68514959 GTAATTCTACCCTATAGGGGTATTTC-AGTAATTCTACCCTAC-AGGCGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTACAAGG-GTATTTCA
* * * *
68515013 ATAAATCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
* * * ** *
68515067 ATAATT-T----TAC-GGGGGATTT-TAGTAATTCTACCCTACTGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTACAAGGGTATTTCA
* * * * * *
68515115 GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
* * * *
68515169 GTAATTCTATCCTATAGTGGTATTT-TAGTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTACAAGGGTATTTCA
68515223 GTAAT
1 GTAAT
68515228 GTTACAAATC
Statistics
Matches: 269, Mismatches: 41, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
48 34 0.13
49 4 0.01
53 7 0.03
54 221 0.82
55 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
Found at i:68515242 original size:27 final size:27
Alignment explanation
Indices: 68515212--68515412 Score: 187
Period size: 27 Copynumber: 7.5 Consensus size: 27
68515202 CTACCCTACA
*
68515212 AGGGTATTTCAGTAATGTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
68515239 AGGGTATTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* *
68515266 AGGGTATTTC-GTTAATTTTATAAGTCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
*
68515293 AGGGTATTTCAATAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* ** * *
68515319 ACGGTATTTTGGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
68515346 GGGGTACTTT-GGTAATTTTACAAGTCA
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
68515373 AGGGTATTTCAATAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
68515399 ATGGTATTTAAGTA
1 AGGGTATTTCAGTA
68515413 TCCATTTCAC
Statistics
Matches: 139, Mismatches: 28, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
26 39 0.28
27 96 0.69
28 4 0.03
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:68515243 original size:81 final size:80
Alignment explanation
Indices: 68514879--68515255 Score: 376
Period size: 81 Copynumber: 4.7 Consensus size: 80
68514869 GGTATCTCGA
* * * *
68514879 TAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCT
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAT-CA-GGGTATTTCAGTAATTCTACCC
*
68514944 TAC-AAGGGTATTTCAG
64 TACTAGGGGTATTTCAG
* * * * *
68514960 TAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGCGTATTTCAATAAATCTACCC
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAT-CAGG-GTATTTCAGTAATTCTACCC
*
68515025 TAC-AGGGGTATTTCGG
64 TACTAGGGGTATTTCAG
* * * * * *
68515041 TATTTCTACCCTACAAGGGTATTTCAATAATT-T--TA-CGGGGGATTTTAGTAATTCTACCCTA
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCATCAGGGTATTTCAGTAATTCTACCCTA
*
68515102 CT-GGGGTATTTCGG
66 CTAGGGGTATTTCAG
* * * * *
68515116 TATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAAGGGTATTTCGGTAATTCTATCC
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACC--ATCAGGGTATTTCAGTAATTCTACCC
* *
68515181 TA-TAGTGGTATTTTAG
64 TACTAGGGGTATTTCAG
*
68515197 TAATTCTACCCTACAAGGGTATTTCAGTAATGT-TACAAATCGAGGGTATTTCAGTAATT
1 TAATTCTACCCTACAAGGGTATTTCAGTAAT-TCTAC-CATC-AGGGTATTTCAGTAATT
68515256 TTGCAAACTG
Statistics
Matches: 247, Mismatches: 37, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
75 61 0.25
76 4 0.02
80 7 0.03
81 174 0.70
82 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (80 bp):
TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCATCAGGGTATTTCAGTAATTCTACCCTA
CTAGGGGTATTTCAG
Found at i:68515282 original size:81 final size:79
Alignment explanation
Indices: 68514867--68515412 Score: 244
Period size: 81 Copynumber: 6.8 Consensus size: 79
68514857 TTACCCCACA
* * * * **
68514867 AGGGTATCTCGATAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTAC-AGGGGTATTTC
1 AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATT-TACAAT-CGA-GGGTATTTC
* * ** *
68514931 GGTAATTCTACCTTAC-A
63 AGTAATTCT-TCAAACTG
* * * * **
68514948 AGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTAC-AGGCGTATTTC
1 AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATT-TACAAT-CGAGG-GTATTTC
* * * ** *
68515012 AATAAATCTACCCTACAG
63 AGTAATTCT-TCAAACTG
* * * *
68515030 -GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAATAATTT--TA-CG-GGGGATTTTAGT
1 AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTTACAATCGAGGGTATTTCAGT
* **
68515090 AATTCTACCCTACTG
66 AATTCT-TCAAACTG
* ** * *
68515105 -GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTAT-AAGGGTATTTC
1 AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATT-TA-C-AATCGAGGGTATTTC
* **
68515168 GGTAATTCTATCCTA-T-
63 AGTAATTCT-TCAAACTG
** *
68515184 AGTGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGTAATGTTACAAATCGAGGGTATTTC
1 AG-GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAAT-TTAC-AATCGAGGGTATTTC
68515249 AGTAATT-TTGCAAACTG
63 AGTAATTCTT-CAAACTG
* * *** * * **
68515266 AGGGTATTTCGTTAATTTTATAAGT-CGAGGGTATTTCAATAATTTTACAATCGACGGTATTTTG
1 AGGGTATTTCGGTAATTCTA-CCCTACAAGGGTATTTCAATAA-TTTACAATCGAGGGTATTTCA
* *
68515330 GTAATT-TTATAAACCG
64 GTAATTCTT-CAAACTG
* * ** * *
68515346 GGGGTACTTT-GGTAATTTTACAAGT-CAAGGGTATTTCAATAATTTTACAATCGATGGTATTTA
1 AGGGTA-TTTCGGTAATTCTAC-CCTACAAGGGTATTTCAATAA-TTTACAATCGAGGGTATTTC
68515409 AGTA
63 AGTA
68515413 TCCATTTCAC
Statistics
Matches: 382, Mismatches: 62, Indels: 43
0.78 0.13 0.09
Matches are distributed among these distances:
75 61 0.16
76 4 0.01
79 1 0.00
80 94 0.25
81 217 0.57
82 5 0.01
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (79 bp):
AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTTACAATCGAGGGTATTTCAGT
AATTCTTCAAACTG
Found at i:68515362 original size:80 final size:80
Alignment explanation
Indices: 68515210--68515412 Score: 255
Period size: 80 Copynumber: 2.5 Consensus size: 80
68515200 TTCTACCCTA
* * * * *
68515210 CAAGGGTATTTCAGTAATGTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTT
1 CAAGGGTATTTCAATAATTTTAC-AATCGACGGTATTTCAGTAATTTTACAAACCGAGGGTATTT
* *
68515275 CGTTAATTTTATAAGT
65 CGGTAATTTTACAAGT
* ** * *
68515291 CGAGGGTATTTCAATAATTTTACAATCGACGGTATTTTGGTAATTTTATAAACCGGGGGTACTTT
1 CAAGGGTATTTCAATAATTTTACAATCGACGGTATTTCAGTAATTTTACAAACCGAGGGTA-TTT
68515356 -GGTAATTTTACAAGT
65 CGGTAATTTTACAAGT
* *
68515371 CAAGGGTATTTCAATAATTTTACAATCGATGGTATTTAAGTA
1 CAAGGGTATTTCAATAATTTTACAATCGACGGTATTTCAGTA
68515413 TCCATTTCAC
Statistics
Matches: 105, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
80 82 0.78
81 23 0.22
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.38
Consensus pattern (80 bp):
CAAGGGTATTTCAATAATTTTACAATCGACGGTATTTCAGTAATTTTACAAACCGAGGGTATTTC
GGTAATTTTACAAGT
Found at i:68515734 original size:46 final size:46
Alignment explanation
Indices: 68515607--68515740 Score: 148
Period size: 46 Copynumber: 2.9 Consensus size: 46
68515597 ATCTAGGGCG
*
68515607 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACAAGCTC-GA-A
1 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGACA
* * *** *
68515651 TGC-CTAGTTACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACA
1 TTCGC-A--TCCATAAGT-GAACTCGGACTCAACTCAACAAGTTCGGACA
68515700 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACAAGTTC
1 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACAAGTTC
68515741 AGATGCTCAA
Statistics
Matches: 70, Mismatches: 13, Indels: 12
0.74 0.14 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.04
46 30 0.43
47 29 0.41
48 2 0.03
49 4 0.06
50 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (46 bp):
TTCGCATCCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGACA
Found at i:68519493 original size:66 final size:68
Alignment explanation
Indices: 68519417--68519603 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
68519407 TAGTACCACT
*
68519417 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
68519479 CACG
65 CACG
68519483 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
68519548 ATCACG
63 ATCACG
68519554 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
68519604 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:68519528 original size:71 final size:71
Alignment explanation
Indices: 68519440--68519603 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
68519430 CGATTTGTCT
68519440 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
68519505 CTTTCA
66 CTTTCA
68519511 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
68519576 CTTTCA
66 CTTTCA
68519582 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
68519604 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:68519641 original size:71 final size:70
Alignment explanation
Indices: 68519440--68519637 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
68519430 CGATTTGTCT
* * *
68519440 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
68519505 CTTTCA
65 CTTTCA
* * *
68519511 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
68519576 CTTTCA
65 CTTTCA
* *
68519582 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
68519638 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:68527063 original size:66 final size:68
Alignment explanation
Indices: 68526987--68527173 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
68526977 TAGTACCACT
*
68526987 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
68527049 CACG
65 CACG
68527053 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
68527118 ATCACG
63 ATCACG
68527124 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
68527174 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:68527098 original size:71 final size:71
Alignment explanation
Indices: 68527010--68527173 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
68527000 CGATTTGTCT
68527010 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
68527075 CTTTCA
66 CTTTCA
68527081 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
68527146 CTTTCA
66 CTTTCA
68527152 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
68527174 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:68527211 original size:71 final size:70
Alignment explanation
Indices: 68527010--68527207 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
68527000 CGATTTGTCT
* * *
68527010 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
68527075 CTTTCA
65 CTTTCA
* * *
68527081 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
68527146 CTTTCA
65 CTTTCA
* *
68527152 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
68527208 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:68528491 original size:15 final size:15
Alignment explanation
Indices: 68528471--68528511 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
68528461 CACAAAAACT
68528471 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
68528486 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
68528501 GGATAAAGAAA
1 GAATAAAGAAA
68528512 CCAAAGATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.10, G:0.20, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:68531605 original size:46 final size:46
Alignment explanation
Indices: 68531436--68531611 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
68531426 TGTAACCTGC
** * * *
68531436 CCATAAGTGAACTCCAACTCAACTCAACGA-TCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGT-TCGGACATTCGCAT
* * *
68531482 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
68531528 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
68531575 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68531612 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
46 65 0.62
47 31 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:68531630 original size:46 final size:45
Alignment explanation
Indices: 68531487--68531630 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 45
68531477 TGCATCCATA
* *
68531487 AGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* *
68531536 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
68531579 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
68531626 AGTGA
1 AGTGA
68531631 CATGTCACTT
Statistics
Matches: 79, Mismatches: 6, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 34 0.43
47 28 0.35
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:68534724 original size:48 final size:48
Alignment explanation
Indices: 68534611--68534776 Score: 239
Period size: 48 Copynumber: 3.5 Consensus size: 48
68534601 TATGTGTGCT
* * *
68534611 AGTGTAAGACATGTTTGGGACATGCATCGGCCAC-A-TTATGA-GAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATAT-ACAAGCC
68534657 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATACAAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATACAAGCC
* **
68534705 AGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATACAAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATACAAGCC
*
68534753 AGTGTAAGACCTGTTTGGGACATG
1 AGTGTAAGACATGTTTGGGACATG
68534777 GCGTCAGCTT
Statistics
Matches: 109, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
46 33 0.30
47 2 0.02
48 74 0.68
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATACAAGCC
Found at i:68538254 original size:39 final size:39
Alignment explanation
Indices: 68538206--68538584 Score: 616
Period size: 39 Copynumber: 9.7 Consensus size: 39
68538196 GTGTGAGATA
68538206 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
68538245 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
68538284 TATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
68538323 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
68538362 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
68538401 TATATCCGGGCTAAGTCCCGAAGGTATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
68538440 TATATCCGGGCTAAGTCCCGAAGGTATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
68538479 TATATCCAGGCTAAGTCCCGAAGGTATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
68538518 TATATCTGGGCTAAGTCCTGAAGGTATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
68538557 TATATCTGGGCTAAG-CCTCAAAGGCATT
1 TATATCCGGGCTAAGTCC-CGAAGGCATT
68538585 TGTGTTGGAA
Statistics
Matches: 321, Mismatches: 18, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
38 2 0.01
39 319 0.99
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:68539128 original size:24 final size:24
Alignment explanation
Indices: 68539098--68539146 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
68539088 CATTGCTTAA
68539098 AACTTACTAAGCATAGAAATGCTT
1 AACTTACTAAGCATAGAAATGCTT
68539122 AACTTACTAAGCATAGAAATGCTT
1 AACTTACTAAGCATAGAAATGCTT
68539146 A
1 A
68539147 CTTTGTTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.16, G:0.12, T:0.29
Consensus pattern (24 bp):
AACTTACTAAGCATAGAAATGCTT
Found at i:68558651 original size:31 final size:30
Alignment explanation
Indices: 68558579--68558686 Score: 130
Period size: 31 Copynumber: 3.6 Consensus size: 30
68558569 CTTGACATAT
* * *
68558579 ACTGGGCCGAAGCCTTTCATTAAA-C-GGTT
1 ACTGGGCCGAAGCTTTTCA-TAAATCAGATC
* *
68558608 ACTGGGCTGAAGCGTTTTCATAAATCATATC
1 ACTGGGCCGAAGC-TTTTCATAAATCAGATC
68558639 ACTGGGCCGAAGCCTTTTCATAAATCAGATC
1 ACTGGGCCGAAG-CTTTTCATAAATCAGATC
68558670 ACTGGGCCGAAGCTTTT
1 ACTGGGCCGAAGCTTTT
68558687 ACTTTAAACG
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
29 16 0.24
30 11 0.16
31 40 0.59
32 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (30 bp):
ACTGGGCCGAAGCTTTTCATAAATCAGATC
Found at i:68558769 original size:42 final size:42
Alignment explanation
Indices: 68558710--68558801 Score: 184
Period size: 42 Copynumber: 2.2 Consensus size: 42
68558700 TGGCCCTTAG
68558710 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
68558752 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
68558794 GCCCATTT
1 GCCCATTT
68558802 GGGGAGACTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:68558977 original size:25 final size:25
Alignment explanation
Indices: 68558949--68559018 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
68558939 CTCTTTTAAT
68558949 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
68558974 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
68558999 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
68559019 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:68559976 original size:27 final size:27
Alignment explanation
Indices: 68559923--68560163 Score: 126
Period size: 27 Copynumber: 8.8 Consensus size: 27
68559913 TTTCATCCTA
* * *
68559923 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTCTACAAAC
**
68559950 CAAGGGTATTTTAGTAATTCTGTAAAC
1 CAAGGGTATTTTAGTAATTCTACAAAC
* * * *
68559977 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTCTACAAA-C
* * * * ** *
68560006 CAATGGTATTTTTGTACTTTTGTAAAT
1 CAAGGGTATTTTAGTAATTCTACAAAC
* * * *
68560033 CAGGGGTATTTTGGTAATTTTACAAATT
1 CAAGGGTATTTTAGTAATTCTACAAA-C
** * *
68560061 TGAGGGTATTTCAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTCTACAAAC
* *
68560088 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTAGTAATTCTACAAAC
* * * *
68560115 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTCTACAAAC
* * *
68560142 TAGGGGTATTTTGGTAATTCTA
1 CAAGGGTATTTTAGTAATTCTA
68560164 TCCTATAGGG
Statistics
Matches: 175, Mismatches: 32, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
26 2 0.01
27 121 0.69
28 39 0.22
29 13 0.07
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTCTACAAAC
Found at i:68560141 original size:54 final size:55
Alignment explanation
Indices: 68559926--68560160 Score: 199
Period size: 55 Copynumber: 4.3 Consensus size: 55
68559916 CATCCTACAA
* * * * * ** *
68559926 GGGTGTTTTGGTAAATCTACAAACCA-AGGGTATTTTAGTAATTCTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGAGGGTATTTTAGTAATTTTACAAACCAG
* * * * * * * ** *
68559980 TGGTATTTCT-ATAATTTTTAGAAAGTCA-ATGGTATTTTTGTACTTTTGTAAATCAG
1 GGGTATTT-TGGTAA-TTTTACAAACT-AGAGGGTATTTTAGTAATTTTACAAACCAG
* * *
68560036 GGGTATTTTGGTAATTTTACAAATTTGAGGGTATTTCAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAGAGGGTATTTTAGTAATTTTACAAACCAG
* * *
68560091 TGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAGAGGGTATTTTAGTAATTTTACAAACCAG
68560145 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
68560161 CTATCCTATA
Statistics
Matches: 143, Mismatches: 33, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
54 48 0.34
55 62 0.43
56 33 0.23
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.42
Consensus pattern (55 bp):
GGGTATTTTGGTAATTTTACAAACTAGAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:68560173 original size:54 final size:54
Alignment explanation
Indices: 68560033--68560193 Score: 198
Period size: 54 Copynumber: 3.0 Consensus size: 54
68560023 TTTTGTAAAT
* * *
68560033 CAGGGGTATTTTGGTAATTTTACAAATTTGAGGGTATTTCAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTCTACAAACTAG-GGGTATTTCAGTAATTTTACAAAC
* * **
68560088 CAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTCTACAAACTAGGGGTATTTCAGTAATTTTACAAAC
* ** *
68560142 TAGGGGTATTTTGGTAATTCTATCCTA-TAGGGGTATTTCAGTAATTTCACAA
1 CAGGGGTATTTTGGTAATTCTA-CAAACTAGGGGTATTTCAGTAATTTTACAA
68560194 TCGAGGGTAA
Statistics
Matches: 92, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
54 63 0.68
55 29 0.32
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTCTACAAACTAGGGGTATTTCAGTAATTTTACAAAC
Found at i:68560179 original size:27 final size:27
Alignment explanation
Indices: 68560034--68560160 Score: 191
Period size: 27 Copynumber: 4.7 Consensus size: 27
68560024 TTTGTAAATC
*
68560034 AGGGGTATTTTGGTAATTTTACAAATT
1 AGGGGTATTTTGGTAATTTTACAAACT
* ** *
68560061 TGAGGGTATTTCAGTAATTTTACAAACC
1 AG-GGGTATTTTGGTAATTTTACAAACT
*
68560089 AGTGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
68560116 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
68560143 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
68560161 CTATCCTATA
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 66 0.75
28 22 0.25
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:68560186 original size:81 final size:82
Alignment explanation
Indices: 68560034--68560193 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 82
68560024 TTTGTAAATC
* * * *
68560034 AGGGGTATTTTGGTAATTTTACAAATTTGAGGGTATTTCAGTAATTTTACAAACCAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAACTAGAGGGTATTTCAGTAATTCTACAAACCAGGGGTATTT
** *
68560099 TGGTAATTTTACAAACT
66 CAGTAATTTCACAAACT
** ** *
68560116 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTCTATCCTA-TAGGGGTATT
1 AGGGGTATTTTGGTAATTTTACAAACTAGAGGGTATTTCAGTAATTCTA-CAAACCAGGGGTATT
68560179 TCAGTAATTTCACAA
65 TCAGTAATTTCACAA
68560194 TCGAGGGTAA
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
81 36 0.55
82 29 0.45
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (82 bp):
AGGGGTATTTTGGTAATTTTACAAACTAGAGGGTATTTCAGTAATTCTACAAACCAGGGGTATTT
CAGTAATTTCACAAACT
Found at i:68560200 original size:27 final size:26
Alignment explanation
Indices: 68560030--68560200 Score: 146
Period size: 27 Copynumber: 6.3 Consensus size: 26
68560020 TACTTTTGTA
68560030 AATCAGGGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTTGGTAATTTTAC
** **
68560056 AAATTTGAGGGTATTTCAGTAATTTTAC
1 -AATCAG-GGGTATTTTGGTAATTTTAC
* *
68560084 AAACCAGTGGTATTTTGGTAATTTTAC
1 -AATCAGGGGTATTTTGGTAATTTTAC
*
68560111 AAACTAGGGGTATTTTGGTAATTTTAC
1 AATC-AGGGGTATTTTGGTAATTTTAC
* *
68560138 AAACTAGGGGTATTTTGGTAATTCTATCC
1 AATC-AGGGGTATTTTGGTAATT-T-TAC
* ** *
68560167 TAT-AGGGGTATTTCAGTAATTTCAC
1 AATCAGGGGTATTTTGGTAATTTTAC
68560192 AATCGAGGG
1 AATC-AGGG
68560201 TAAAACGTTA
Statistics
Matches: 118, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
25 3 0.03
26 4 0.03
27 85 0.72
28 23 0.19
29 3 0.03
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (26 bp):
AATCAGGGGTATTTTGGTAATTTTAC
Found at i:68560226 original size:27 final size:27
Alignment explanation
Indices: 68560192--68560384 Score: 235
Period size: 27 Copynumber: 7.1 Consensus size: 27
68560182 GTAATTTCAC
*
68560192 AATCGAGGGTAAAACGTTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
68560219 AA-CTGAGGGTAAAATGGTAATTTTTTA
1 AATC-GAGGGTAAAACGGTAATTTTATA
* *
68560246 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
68560273 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
68560300 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * * *
68560327 AATCGCGGGTGAAACAGTAATTTTAGA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
68560354 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTATA
68560381 AATC
1 AATC
68560385 AAAGGCATTT
Statistics
Matches: 142, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 140 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTATA
Found at i:68560308 original size:81 final size:82
Alignment explanation
Indices: 68560192--68560384 Score: 266
Period size: 81 Copynumber: 2.4 Consensus size: 82
68560182 GTAATTTCAC
* * * * *
68560192 AATCGAGGGTAAAACGTTAATTTTATAAA-CTGAGGGTAAAATGGTAATTTTTTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATCTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
*
68560256 AAAACGGTAATTCT-GTA
66 AAAACAGTAATTCTAG-A
*
68560273 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGCGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATCTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
* *
68560337 GAAACAGTAATTTTAGA
66 AAAACAGTAATTCTAGA
*
68560354 AATCGAGGGTAAAATGGTAATTCTACAAATC
1 AATCGAGGGTAAAATGGTAATTCTATAAATC
68560385 AAAGGCATTT
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
81 98 0.98
82 2 0.02
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (82 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
AAAACAGTAATTCTAGA
Found at i:68560401 original size:81 final size:81
Alignment explanation
Indices: 68560235--68560409 Score: 208
Period size: 81 Copynumber: 2.2 Consensus size: 81
68560225 GGGTAAAATG
* * *
68560235 GTAATTTTTTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
* * * *
68560300 AATCGAGGGTAAAACG
66 AATCAAAGGCAAAACA
* * *
68560316 GTAATTTTGTAAATCGCGGGTGAAACAGTAATTTTAG-AAATCGAGGGTAAAATGGTAATTCTAC
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCT-GTAAATCGAGGGTAAAATGGTAATTCTAC
***
68560380 AAATCAAAGGCATTTCA
65 AAATCAAAGGCAAAACA
*
68560397 GTAATTTGGTAAA
1 GTAATTTTGTAAA
68560410 CTAAAGTATT
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 78 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
AATCAAAGGCAAAACA
Found at i:68564330 original size:40 final size:40
Alignment explanation
Indices: 68564246--68564430 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
68564236 TCGAATGATG
* *
68564246 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
68564285 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
68564326 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
68564365 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
68564404 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
68564431 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:68564382 original size:79 final size:81
Alignment explanation
Indices: 68564246--68564428 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
68564236 TCGAATGATG
* *
68564246 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
68564310 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
68564325 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
68564387 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
68564405 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68564429 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:68564452 original size:79 final size:78
Alignment explanation
Indices: 68564247--68564463 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
68564237 CGAATGATGT
* *
68564247 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
68564310 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
68564327 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
68564390 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
68564406 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
68564464 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:68572541 original size:39 final size:40
Alignment explanation
Indices: 68572440--68572642 Score: 238
Period size: 39 Copynumber: 5.1 Consensus size: 40
68572430 TCGAATGATG
* *
68572440 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
68572480 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
68572519 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
68572559 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
68572598 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
68572638 TCCGG
1 TCCGG
68572643 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 14, Indels: 16
0.82 0.08 0.09
Matches are distributed among these distances:
39 71 0.50
40 62 0.44
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:68572641 original size:79 final size:79
Alignment explanation
Indices: 68572441--68572656 Score: 246
Period size: 79 Copynumber: 2.7 Consensus size: 79
68572431 CGAATGATGT
* **
68572441 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGGGTTAAG-TCCGAAGGCATT
*
68572504 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* *
68572521 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCCGGGTTAAGTCCGAAGGCATTTG
68572584 TGCGAGTTACT-ATAA
65 TGCGAGTTACTAAT-A
* ** *
68572599 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGGTT-AAGTCCGAAGG
68572657 TACGTGATTC
Statistics
Matches: 117, Mismatches: 12, Indels: 15
0.81 0.08 0.10
Matches are distributed among these distances:
77 2 0.02
78 40 0.34
79 58 0.50
80 17 0.15
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGGTTAAGTCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:68574878 original size:46 final size:46
Alignment explanation
Indices: 68574828--68575000 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
68574818 TGGTTGAGCA
68574828 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
68574874 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
68574919 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68574967 CCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68575001 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68574984 original size:93 final size:93
Alignment explanation
Indices: 68574825--68574995 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
68574815 GGATGGTTGA
*
68574825 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
*
68574890 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGCCCGAGTTCGTGAAATGTAACTAG
*
68574918 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
68574983 TGAGCCCGAGTTC
66 TGAGCCCGAGTTC
68574996 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGCCCGAGTTCGTGAAATGTAACTAG
Found at i:68577177 original size:31 final size:31
Alignment explanation
Indices: 68577134--68577274 Score: 255
Period size: 31 Copynumber: 4.5 Consensus size: 31
68577124 TTTAACGGTT
* *
68577134 ACTGGGCTGAAGCGTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
68577165 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
68577196 ACTGGGCCGAAGCCTTTTCATAAATTATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
68577227 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
68577258 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
68577275 ACTGTAAACG
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:68578309 original size:27 final size:27
Alignment explanation
Indices: 68578279--68578370 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
68578269 ATTACCAAAG
* * **
68578279 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTAAAAAATTACCGTTT
*
68578306 TACCCTCGATTTAAAAAATTACCATTT
1 TACCCTCGATTTAAAAAATTACCGTTT
* *
68578333 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTAAAAAATTACCGTTT
68578360 TACCCTCGATT
1 TACCCTCGATT
68578371 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTAAAAAATTACCGTTT
Found at i:68578312 original size:54 final size:53
Alignment explanation
Indices: 68578254--68578380 Score: 139
Period size: 54 Copynumber: 2.4 Consensus size: 53
68578244 TATTGAAATG
* * * **
68578254 CCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTATTGTTTTA
1 CCCTCGA-TTGTAAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTA
***
68578308 CCCTCGATT-TAAAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTA
1 CCCTCGATTGT--AAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTA
*
68578362 CCCTCGATTGTGAAATTAC
1 CCCTCGATTGTAAAATTAC
68578381 TGAAATACCC
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
52 1 0.02
53 9 0.15
54 50 0.82
55 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (53 bp):
CCCTCGATTGTAAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTA
Found at i:68578432 original size:27 final size:27
Alignment explanation
Indices: 68578402--68578525 Score: 167
Period size: 27 Copynumber: 4.6 Consensus size: 27
68578392 TGTAGGATAG
68578402 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
68578429 AATTACCAAAATACCCCTACTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
68578456 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *** *
68578483 AATTACCGAAATACTTTTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
68578510 AATTACCAAAATACCC
1 AATTACCAAAATACCC
68578526 TGATTTACAA
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:68578444 original size:54 final size:53
Alignment explanation
Indices: 68578369--68578524 Score: 150
Period size: 54 Copynumber: 2.9 Consensus size: 53
68578359 TTACCCTCGA
* ** * *
68578369 TTGTGAAATTACTGAAATACCCTTGTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCTACTAGG-TAAAATTACCAAAATACCACTAGT
* * ** *
68578423 TTGTAAAATTACCAAAATACCCCTACTTTGTAAAATTACCAAAATACCACTGGT
1 TTGTGAAATTACCGAAATA-CCCTACTAGGTAAAATTACCAAAATACCACTAGT
** * **
68578477 TTGTGAAATTACCGAAATACTTTTAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCGAAATAC-CCTACTAGGTAAAATTACCAAAATACC
68578525 CTGATTTACA
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 78 0.92
55 6 0.07
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (53 bp):
TTGTGAAATTACCGAAATACCCTACTAGGTAAAATTACCAAAATACCACTAGT
Found at i:68578564 original size:53 final size:54
Alignment explanation
Indices: 68578402--68578628 Score: 151
Period size: 54 Copynumber: 4.2 Consensus size: 54
68578392 TGTAGGATAG
* ** *
68578402 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCA-AAATACCCCT-ACTTTGTAA
1 AATTACCAAAATACCACTGA-TTTACAAAATTA-CAGAAATA-CCTTGACTTTGTAA
* *** * * * *
68578456 AATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACTTTTAATTTGTAA
1 AATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCTTGACTTTGTAA
* * *
68578510 AATTACCAAAATACC-CTGATTTACAAAATTATAGAAATCCCTTGACTTTCTAAA
1 AATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCTTGACTTTGT-AA
* * * * * * *
68578564 AATTA-TAGAAATACCATTGGTTTAAAAAATTACTGAAATACCCTTG-GTTTGTAG
1 AATTACCA-AAATACCACTGATTTACAAAATTACAGAAATA-CCTTGACTTTGTAA
*
68578618 ATTTACCAAAA
1 AATTACCAAAA
68578629 CACCCTTGTA
Statistics
Matches: 135, Mismatches: 30, Indels: 16
0.75 0.17 0.09
Matches are distributed among these distances:
53 29 0.21
54 78 0.58
55 23 0.17
56 5 0.04
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.33
Consensus pattern (54 bp):
AATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCTTGACTTTGTAA
Found at i:68578592 original size:28 final size:27
Alignment explanation
Indices: 68578518--68578613 Score: 99
Period size: 27 Copynumber: 3.6 Consensus size: 27
68578508 AAAATTACCA
* *
68578518 AAATACCC-TGATTTACAAAATTATAG
1 AAATACCCTTGGTTTAAAAAATTATAG
* *
68578544 AAAT-CCCTTGACTTTCTAAAAATTATAG
1 AAATACCCTTG-GTTT-AAAAAATTATAG
*
68578572 AAATACCATTGGTTTAAAAAATTACT-G
1 AAATACCCTTGGTTTAAAAAATTA-TAG
68578599 AAATACCCTTGGTTT
1 AAATACCCTTGGTTT
68578614 GTAGATTTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
25 3 0.05
26 6 0.10
27 26 0.45
28 18 0.31
29 5 0.09
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATACCCTTGGTTTAAAAAATTATAG
Found at i:68578690 original size:27 final size:27
Alignment explanation
Indices: 68578658--68578709 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
68578648 AACTAAAATA
68578658 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
68578685 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
68578710 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:68579574 original size:25 final size:26
Alignment explanation
Indices: 68579541--68579610 Score: 108
Period size: 25 Copynumber: 2.8 Consensus size: 26
68579531 AGGAAGTGCT
*
68579541 AAAAGGGCTCTGCCCCAGTTTACCA-
1 AAAAGGGCTTTGCCCCAGTTTACCAG
*
68579566 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTTTGCCCCAGTTTACCAG
68579592 AAAA-GGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
68579611 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (26 bp):
AAAAGGGCTTTGCCCCAGTTTACCAG
Done.