Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 234 of 378
Found at i:69220950 original size:70 final size:71
Alignment explanation
Indices: 69220800--69220962 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
69220790 GAGATGTATC
69220800 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
69220865 AGGACA
66 AGGACA
69220871 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
69220935 AGGACA
66 AGGACA
69220941 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
69220963 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:69227941 original size:68 final size:70
Alignment explanation
Indices: 69227869--69228066 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
69227859 ACACCCTGTA
* * * *
69227869 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
69227931 ATAAAT
65 ATAAAT
*
69227937 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
69228002 ATAAAT
65 ATAAAT
* * *
69228008 GTAGCTGGGTCGCATGCGTGATTCCAAGTGACGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGA-AGACACCATGTAGACAAGAGAGCTACG
69228067 AGACAAATCG
Statistics
Matches: 118, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 90 0.76
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:69227992 original size:71 final size:71
Alignment explanation
Indices: 69227903--69228066 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
69227893 GAGATGTATC
69227903 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
69227968 AGGACA
66 AGGACA
*
69227974 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
69228039 CGGACA
66 AGGACA
69228045 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
69228067 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:69243464 original size:40 final size:39
Alignment explanation
Indices: 69243299--69243482 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
69243289 AAATTGAATG
* * *
69243299 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
69243339 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
69243379 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
69243419 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
69243458 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
69243483 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:69243507 original size:80 final size:81
Alignment explanation
Indices: 69243339--69243527 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
69243329 GCTGGAAATT
* * * *
69243339 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
69243404 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
69243420 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
69243483 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
69243499 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
69243528 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:69253673 original size:30 final size:30
Alignment explanation
Indices: 69253639--69253695 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
69253629 TCTCATGCAC
*
69253639 TACTACATAACAAGAAATACTTTTAAACTA
1 TACTAAATAACAAGAAATACTTTTAAACTA
* *
69253669 TACTAAATAGCAGGAAATACTTTTAAA
1 TACTAAATAACAAGAAATACTTTTAAA
69253696 GTATCGTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.30
Consensus pattern (30 bp):
TACTAAATAACAAGAAATACTTTTAAACTA
Found at i:69259833 original size:10 final size:10
Alignment explanation
Indices: 69259820--69259854 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
69259810 ATATATGTAT
69259820 ATATCATGGC
1 ATATCATGGC
69259830 ATATCATGTGC
1 ATATCATG-GC
69259841 ATATCATGGC
1 ATATCATGGC
69259851 ATAT
1 ATAT
69259855 TATGTACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (10 bp):
ATATCATGGC
Found at i:69259867 original size:21 final size:21
Alignment explanation
Indices: 69259808--69259867 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
69259798 CCCAACCCAT
*
69259808 GCATA-TATGTATATATCATG
1 GCATATTATGTACATATCATG
* *
69259828 GCATATCATGTGCATATCATG
1 GCATATTATGTACATATCATG
*
69259849 GCATATTATGTACAAATCA
1 GCATATTATGTACATATCA
69259868 GTATCACATG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 5 0.15
21 28 0.85
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (21 bp):
GCATATTATGTACATATCATG
Found at i:69263111 original size:24 final size:24
Alignment explanation
Indices: 69263079--69263145 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 24
69263069 TCATTAGGGA
* *
69263079 TTACTAATTGCAGCTCGTGA-GAGC
1 TTACCAATTGCAACTCGT-ATGAGC
*
69263103 TTACCAATTCTCAACTCGTATGAGC
1 TTACCAATT-GCAACTCGTATGAGC
*
69263128 TTACCGATTG-AACTCGTA
1 TTACCAATTGCAACTCGTA
69263146 AAAGCTTATC
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
23 8 0.22
24 9 0.25
25 19 0.53
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (24 bp):
TTACCAATTGCAACTCGTATGAGC
Found at i:69263127 original size:25 final size:25
Alignment explanation
Indices: 69263099--69263175 Score: 86
Period size: 25 Copynumber: 3.2 Consensus size: 25
69263089 CAGCTCGTGA
*
69263099 GAGCTTACCAATTCTCAACTCGTAT
1 GAGCTTACCGATTCTCAACTCGTAT
* *
69263124 GAGCTTACCGA-T-TGAACTCGTAA
1 GAGCTTACCGATTCTCAACTCGTAT
* * *
69263147 AAGCTTATCGATTCTCAACTTGTAT
1 GAGCTTACCGATTCTCAACTCGTAT
69263172 GAGC
1 GAGC
69263176 ATACATATAT
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
23 18 0.44
24 2 0.05
25 21 0.51
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (25 bp):
GAGCTTACCGATTCTCAACTCGTAT
Found at i:69263145 original size:23 final size:23
Alignment explanation
Indices: 69263115--69263159 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
69263105 ACCAATTCTC
**
69263115 AACTCGTATGAGCTTACCGATTG
1 AACTCGTAAAAGCTTACCGATTG
*
69263138 AACTCGTAAAAGCTTATCGATT
1 AACTCGTAAAAGCTTACCGATT
69263160 CTCAACTTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (23 bp):
AACTCGTAAAAGCTTACCGATTG
Found at i:69264533 original size:56 final size:56
Alignment explanation
Indices: 69264445--69264599 Score: 238
Period size: 56 Copynumber: 2.8 Consensus size: 56
69264435 AGTAAGACCA
* *
69264445 TGGCATCGATATGTGACTCCGATATATGTGTGCGACTAAGACCACGTTTAATACGT
1 TGGCATCGATATGTGACTCCGATATATGTGTGCGAGTAAGACCACATTTAATACGT
* * * *
69264501 TTGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGATCACATTTAGTACGT
1 TGGCATCGATATGTGACTCCGATATATGTGTGCGAGTAAGACCACATTTAATACGT
* *
69264557 TGGCATCGATATGTGACTCTGATATATGTGTGTGAGTAAGACC
1 TGGCATCGATATGTGACTCCGATATATGTGTGCGAGTAAGACC
69264600 CTGTCTAGGA
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 88 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCCGATATATGTGTGCGAGTAAGACCACATTTAATACGT
Found at i:69264617 original size:56 final size:55
Alignment explanation
Indices: 69264445--69264628 Score: 221
Period size: 56 Copynumber: 3.3 Consensus size: 55
69264435 AGTAAGACCA
* *
69264445 TGGCATCGATATGTGACTCCGATATATGTGTGCGACTAAGACCAC-GTTTAATACGT
1 TGGCATCGATATGTGACTCCGATATATGTGTGCGAGTAAGACC-CTG-TTAGTACGT
* * *
69264501 TTGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGATCACAT-TTAGTACGT
1 TGGCATCGATATGTGACTCCGATATATGTGTGCGAGTAAGA-C-CCTGTTAGTACGT
* * *
69264557 TGGCATCGATATGTGACTCTGATATATGTGTGTGAGTAAGACCCTGTCTAGGACAG-
1 TGGCATCGATATGTGACTCCGATATATGTGTGCGAGTAAGACCCTGT-TAGTAC-GT
69264613 TGGCATCGATATGTGA
1 TGGCATCGATATGTGA
69264629 TTTGGAAGAC
Statistics
Matches: 111, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
54 2 0.02
55 2 0.02
56 104 0.94
57 2 0.02
58 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (55 bp):
TGGCATCGATATGTGACTCCGATATATGTGTGCGAGTAAGACCCTGTTAGTACGT
Found at i:69266638 original size:27 final size:27
Alignment explanation
Indices: 69266592--69266683 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
69266582 ATTACCAAAG
* * ***
69266592 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
69266619 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
*
69266646 TATCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGA-TTTACAAAATTACCATTT
69266673 TACCCTCGATT
1 TACCCTCGATT
69266684 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:69266754 original size:54 final size:54
Alignment explanation
Indices: 69266682--69266946 Score: 202
Period size: 54 Copynumber: 4.9 Consensus size: 54
69266672 TTACCCTCGA
* * *
69266682 TTGTGAAATTACTAAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGTATGATAGAATTACCAAAATACCCCTAGT
* * *
69266736 TTGTAAAATTACCAAAATACCCCTAGTTTG-TAAAATTACAAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCT-GTATGATAGAATTACCAAAATACCCCTAGT
* * * *
69266790 TTGTAAAATTACCAAAATACCACTGGCT-TG-T-GAAATTATCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-G-TATGATAG-AATTACCAAAATACCCCT-AGT
* * * ** * *
69266844 TTGTAAAATTACCAAAATACCCTTG-ATTTACAGAATTACTGAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGTA-TGATAGAATTACCAAAATACCCCTAGT
* * * * * * *
69266898 TTGTAGATTTACCAAAACACCCTTGTAGGAT-GAAATGACTAAAATACCC
1 TTGTAAAATTACCAAAATACCCCTGTATGATAG-AATTACCAAAATACCC
69266947 TAATAGGTAA
Statistics
Matches: 170, Mismatches: 30, Indels: 22
0.77 0.14 0.10
Matches are distributed among these distances:
53 7 0.04
54 154 0.91
55 9 0.05
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.29
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCTGTATGATAGAATTACCAAAATACCCCTAGT
Found at i:69266866 original size:27 final size:27
Alignment explanation
Indices: 69266682--69266865 Score: 219
Period size: 27 Copynumber: 6.8 Consensus size: 27
69266672 TTACCCTCGA
* *
69266682 TTGTGAAATTACTAAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTAGT
** *
69266708 AGGATAGAATTACCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTAGT
69266736 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
*
69266763 TTGTAAAATTACAAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * *
69266790 TTGTAAAATTACCAAAATACCACTGGC
1 TTGTAAAATTACCAAAATACCCCTAGT
* * * *
69266817 TTGTGAAATTATCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
69266844 TTGTAAAATTACCAAAATACCC
1 TTGTAAAATTACCAAAATACCC
69266866 TTGATTTACA
Statistics
Matches: 131, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
26 4 0.03
27 122 0.93
28 5 0.04
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:69266872 original size:27 final size:27
Alignment explanation
Indices: 69266715--69266922 Score: 172
Period size: 27 Copynumber: 7.7 Consensus size: 27
69266705 TGTAGGATAG
*
69266715 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
*
69266742 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
69266769 AATTACAAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
** *
69266796 AATTACCAAAATACCAC-TGGCTTGTGA
1 AATTACCAAAATACC-CTTGATTTGTAA
* * **
69266823 AATTATCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
** *
69266850 AATTACCAAAATACCCTTGATTTACAG
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
69266877 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGATTTGTAA
* *
69266904 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
69266923 TAGGATGAAA
Statistics
Matches: 150, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 148 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:69266920 original size:81 final size:82
Alignment explanation
Indices: 69266682--69266920 Score: 215
Period size: 81 Copynumber: 2.9 Consensus size: 82
69266672 TTACCCTCGA
* * * * * *
69266682 TTGTGAAATTACTAAAATACCCCT-G-TAGGATAGAATTACCAAAATACCCCTAGTTTGTAAAAT
1 TTGTAAAATTACAAAAATACCCCTAGATTGTA-AGAATTACCAAAATA-CCCTGGTTTGTAGAAT
*
69266745 TACCAAAATACCC-CTAGT
64 TACCAAAATACCCTCTAAT
* *
69266763 TTGTAAAATTACAAAAATACCCCTAGTTTGTAA-AATTACCAAAATACCACTGGCTTGT-GAAAT
1 TTGTAAAATTACAAAAATACCCCTAGATTGTAAGAATTACCAAAATACC-CTGGTTTGTAG-AAT
* *
69266826 TATCGAAATACCCTC-AAT
64 TACCAAAATACCCTCTAAT
* * ** *
69266844 TTGTAAAATTACCAAAATA-CCCTTGATT-TACAGAATTACTGAAATACCCTTGGTTTGTAGATT
1 TTGTAAAATTACAAAAATACCCCTAGATTGTA-AGAATTACCAAAATACCC-TGGTTTGTAGAAT
*
69266907 TACCAAAACACCCT
64 TACCAAAATACCCT
69266921 TGTAGGATGA
Statistics
Matches: 129, Mismatches: 20, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
79 2 0.02
80 11 0.09
81 109 0.84
82 4 0.03
83 3 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (82 bp):
TTGTAAAATTACAAAAATACCCCTAGATTGTAAGAATTACCAAAATACCCTGGTTTGTAGAATTA
CCAAAATACCCTCTAAT
Found at i:69268921 original size:40 final size:39
Alignment explanation
Indices: 69268761--69268923 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
69268751 TGTGTATGAA
*
69268761 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
69268800 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
69268839 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
69268878 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
69268918 TGTGCG
1 TGTGCG
69268924 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:69268939 original size:40 final size:39
Alignment explanation
Indices: 69268761--69268954 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
69268751 TGTGTATGAA
* *
69268761 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
69268800 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
69268839 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
69268878 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
69268918 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
69268955 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:69276736 original size:39 final size:40
Alignment explanation
Indices: 69276682--69276766 Score: 136
Period size: 39 Copynumber: 2.1 Consensus size: 40
69276672 TGTGTATGAA
69276682 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
* * *
69276721 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
69276761 TGTGCG
1 TGTGCG
69276767 GGTTACCATA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 25 0.60
40 17 0.40
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.27
Consensus pattern (40 bp):
TGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:69276764 original size:40 final size:40
Alignment explanation
Indices: 69276682--69276802 Score: 145
Period size: 40 Copynumber: 3.0 Consensus size: 40
69276672 TGTGTATGAA
* *
69276682 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
*
69276721 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
* *** * * *
69276761 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGCGTT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
69276801 TG
1 TG
69276803 AACGAGTAGC
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
39 25 0.36
40 45 0.64
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (40 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
Found at i:69281705 original size:80 final size:80
Alignment explanation
Indices: 69281621--69281769 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
69281611 TATGGTAACC
* * * *
69281621 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
69281685 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
69281701 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
69281766 CCGG
66 CCGG
69281770 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:69281711 original size:40 final size:38
Alignment explanation
Indices: 69281662--69281769 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
69281652 ATCACGATTT
*
69281662 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
69281702 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
69281742 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
69281770 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:69284478 original size:40 final size:40
Alignment explanation
Indices: 69284433--69284598 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
69284423 CGGAATATAA
69284433 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
69284473 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
69284513 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
69284552 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
69284591 CCGGATAT
1 CCGGATAT
69284599 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69284555 original size:39 final size:38
Alignment explanation
Indices: 69284449--69284560 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
69284439 ATAATCACGT
* * *
69284449 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
69284489 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
69284528 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
69284561 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:69284582 original size:79 final size:78
Alignment explanation
Indices: 69284449--69284598 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
69284439 ATAATCACGT
*
69284449 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
69284514 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
69284528 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
69284591 CCGGATAT
64 CCGGATAT
69284599 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:69285444 original size:17 final size:19
Alignment explanation
Indices: 69285421--69285466 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
69285411 AAGAAGCATG
69285421 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
69285439 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
69285457 AATCATGCTC
1 AATCATGCTC
69285467 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:69291839 original size:40 final size:40
Alignment explanation
Indices: 69291794--69291960 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
69291784 CGGAATATAA
69291794 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
69291834 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
69291874 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
69291914 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
69291953 CCGGATAT
1 CCGGATAT
69291961 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69294987 original size:13 final size:13
Alignment explanation
Indices: 69294969--69294995 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
69294959 TGAATTTACA
69294969 TGTGTGAAAATTT
1 TGTGTGAAAATTT
69294982 TGTGTGAAAATTT
1 TGTGTGAAAATTT
69294995 T
1 T
69294996 ATTATTTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:69296193 original size:42 final size:43
Alignment explanation
Indices: 69296132--69296237 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 43
69296122 AACTTATGAT
* *
69296132 TTACATCTAAGACCATGTCTGGGACA-TCGCCATC-ATATTTGA
1 TTACATGTAAGACCATGTCTAGGACAGT-GCCATCGATATTTGA
* * * *
69296174 TTTCGTGTAAGACCCTGTCTAGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTAGGACAGTGCCATCGATATTTGA
*
69296217 TTACATGTAAGACCACGTCTA
1 TTACATGTAAGACCATGTCTA
69296238 TAACGTTGGC
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTAGGACAGTGCCATCGATATTTGA
Found at i:69299422 original size:40 final size:40
Alignment explanation
Indices: 69299332--69299551 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
69299322 ACCCAAGTAT
* ** * *
69299332 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
69299370 CTTTGGGTCTTAGCCCAGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
69299410 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
69299450 CTTCGGGTCTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
69299490 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
69299530 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
69299552 CATTCGAATA
Statistics
Matches: 151, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
38 10 0.07
39 16 0.11
40 122 0.81
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:69307468 original size:40 final size:40
Alignment explanation
Indices: 69307378--69307596 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
69307368 ACCCAAGTAT
* ** * *
69307378 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
69307416 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
69307456 CTTCAGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
69307496 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
69307536 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
69307576 CTTCGGGACTTAGCCC-GATAT
1 CTTCGGGACTTAGCCCGGATAT
69307597 CATTCGAATA
Statistics
Matches: 152, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
38 11 0.07
39 23 0.15
40 114 0.75
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:69307554 original size:120 final size:117
Alignment explanation
Indices: 69307378--69307596 Score: 323
Period size: 120 Copynumber: 1.8 Consensus size: 117
69307368 ACCCAAGTAT
* * *
69307378 CTTCGGGATTTAGCCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTCA
1 CTTCGGGATTTAGCCGGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTCA
*
69307443 CTAGCATAAATGCCTTCAGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
66 CTAGCATAAAAGCCTTCAGGACTTAGCCC-GATATAGTCGCTAGCACAAATGC
* * *
69307496 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAG
1 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCAC-AAGGCCTTCGGATCTTAGCCCGGATATAG
*
69307560 TCACTAGCATAAAAGCCTTCGGGACTTAGCCCGATAT
63 TCACTAGCATAAAAGCCTTCAGGACTTAGCCCGATAT
69307597 CATTCGAATA
Statistics
Matches: 90, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
117 1 0.01
118 11 0.12
119 23 0.26
120 55 0.61
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (117 bp):
CTTCGGGATTTAGCCGGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTCA
CTAGCATAAAAGCCTTCAGGACTTAGCCCGATATAGTCGCTAGCACAAATGC
Found at i:69319641 original size:91 final size:94
Alignment explanation
Indices: 69319481--69319682 Score: 232
Period size: 91 Copynumber: 2.2 Consensus size: 94
69319471 TATGTACGAG
** * ** **
69319481 CCCATGTAAGACCATGTCTAGGACATGGTTTTGGCATCGATATGTAATTTCGTGTAAGACCATAG
1 CCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATATAATCCCACGTAAGACCATAG
*
69319546 CTGGG-C-T-ATCGGCATCAATATGTGAT
66 CTGGGACATGATCAGCATCAATATGTGAT
* *
69319572 CCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATCTATGATCCCACGTAAGACCAT-G
1 CCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATATAATCCCACGTAAGACCATAG
* *
69319636 TCTGGGACATGGCATTAGCATCGATATGTGAT
66 -CTGGGACAT-G-ATCAGCATCAATATGTGAT
*
69319668 CCAATGTAAGACCAT
1 CCCATGTAAGACCAT
69319683 ATCCGGGTTA
Statistics
Matches: 92, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
90 1 0.01
91 59 0.64
92 1 0.01
93 1 0.01
96 30 0.33
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (94 bp):
CCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATATAATCCCACGTAAGACCATAG
CTGGGACATGATCAGCATCAATATGTGAT
Found at i:69319699 original size:48 final size:48
Alignment explanation
Indices: 69319481--69319705 Score: 219
Period size: 48 Copynumber: 4.8 Consensus size: 48
69319471 TATGTACGAG
* ** *
69319481 CCCATGTAAGACCATGTCTAGGACATGGTTTTGGCATCGATATGTAAT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGAT
** * * *
69319529 TTCGTGTAAGACCATAG-CTGGG-C-T---ATCGGCATCAATATGTGAT
1 CCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATGTGAT
* * *
69319572 CCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATCTATGAT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGAT
* *
69319620 CCCACGTAAGACCATGTCTGGGACATGGCATTAGCATCGATATGTGAT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGAT
* * * ** *
69319668 CCAATGTAAGACCATATCCGGGTTATAGCATTGGCATC
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
69319706 CTACCATGTG
Statistics
Matches: 141, Mismatches: 29, Indels: 14
0.77 0.16 0.08
Matches are distributed among these distances:
42 1 0.01
43 31 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 104 0.74
49 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (48 bp):
CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGAT
Found at i:69323493 original size:26 final size:24
Alignment explanation
Indices: 69323411--69323503 Score: 91
Period size: 24 Copynumber: 3.8 Consensus size: 24
69323401 GAGCTGATGG
* *
69323411 ACAGTAAGCTCTAATGAGCT-AAA
1 ACAGTAAGCTCTTACGAGCTGAAA
*
69323434 AC-GATAAGCTCTGACGAGCTGAAA
1 ACAG-TAAGCTCTTACGAGCTGAAA
69323458 ACAGTAAGCTCTTACGAGCTGATATA
1 ACAGTAAGCTCTTACGAGCTGA-A-A
* * *
69323484 TCAGTAAGCTCATACAAGCT
1 ACAGTAAGCTCTTACGAGCT
69323504 TCGGTGAGTC
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
22 1 0.02
23 16 0.27
24 22 0.37
25 2 0.03
26 18 0.31
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (24 bp):
ACAGTAAGCTCTTACGAGCTGAAA
Found at i:69327491 original size:30 final size:30
Alignment explanation
Indices: 69327457--69327517 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
69327447 TCCTTAACTC
*
69327457 AAACTTTTTCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
69327487 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
69327517 A
1 A
69327518 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:69330048 original size:34 final size:34
Alignment explanation
Indices: 69330010--69330080 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
69330000 TTTGTTCTTT
*
69330010 ACAGTCACCTTATTCAGTTGTCTGTAATCAATAC
1 ACAGTCACCTTATTCAGCTGTCTGTAATCAATAC
* *
69330044 ACAGTCACCTTATTTAGCTGTCTGTAATTAATAC
1 ACAGTCACCTTATTCAGCTGTCTGTAATCAATAC
69330078 ACA
1 ACA
69330081 ATCTCATCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (34 bp):
ACAGTCACCTTATTCAGCTGTCTGTAATCAATAC
Found at i:69331344 original size:17 final size:17
Alignment explanation
Indices: 69331313--69331347 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
69331303 GGCTTTTCTT
69331313 TTCTCTTTGCTAAGCTC
1 TTCTCTTTGCTAAGCTC
69331330 TTCTACTTTGC-AAGCTC
1 TTCT-CTTTGCTAAGCTC
69331347 T
1 T
69331348 GTCAACTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.14, C:0.29, G:0.11, T:0.46
Consensus pattern (17 bp):
TTCTCTTTGCTAAGCTC
Found at i:69332606 original size:13 final size:13
Alignment explanation
Indices: 69332588--69332625 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
69332578 CCAACCACAC
69332588 GCCCGTGTGTCTA
1 GCCCGTGTGTCTA
69332601 GCCCGTGTGT-TA
1 GCCCGTGTGTCTA
*
69332613 GGCCGTGTG-CTA
1 GCCCGTGTGTCTA
69332625 G
1 G
69332626 GTCGTGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.08, C:0.26, G:0.37, T:0.29
Consensus pattern (13 bp):
GCCCGTGTGTCTA
Found at i:69333625 original size:19 final size:19
Alignment explanation
Indices: 69333581--69333635 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
69333571 AATTCATTCG
*
69333581 ATAACAGTAACTT-ATCTAT
1 ATAACAGT-ACTTCATCCAT
*
69333600 TTAAACAGTACTTCATCCAT
1 AT-AACAGTACTTCATCCAT
*
69333620 ATAACAGTAATTCATC
1 ATAACAGTACTTCATC
69333636 TGTGTAACAC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 18 0.60
20 12 0.40
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.35
Consensus pattern (19 bp):
ATAACAGTACTTCATCCAT
Found at i:69333845 original size:23 final size:24
Alignment explanation
Indices: 69333816--69333869 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
69333806 GATAGACACC
*
69333816 AAGCTCT-ACTGAGCT-AAAACGGT
1 AAGCTCTGA-TGAGCTGAAAACAGT
*
69333839 AAGCTCTGATGAGCTGAAAATAGT
1 AAGCTCTGATGAGCTGAAAACAGT
69333863 AAGCTCT
1 AAGCTCT
69333870 TACGACTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (24 bp):
AAGCTCTGATGAGCTGAAAACAGT
Found at i:69345175 original size:28 final size:28
Alignment explanation
Indices: 69345134--69345203 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
69345124 GGCTACTTCA
*
69345134 GGCCGCGATGGGCCGAAAAGGGCC-TTGTG
1 GGCC-CGATGGGCCGAAAAAGGCCATT-TG
69345163 GGCCCGATGGGCCGAAAAAGGCCATTTG
1 GGCCCGATGGGCCGAAAAAGGCCATTTG
*
69345191 GGCCCAATGGGCC
1 GGCCCGATGGGCC
69345204 TACGGGCCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 32 0.84
29 6 0.16
ACGTcount: A:0.20, C:0.27, G:0.40, T:0.13
Consensus pattern (28 bp):
GGCCCGATGGGCCGAAAAAGGCCATTTG
Found at i:69345457 original size:27 final size:28
Alignment explanation
Indices: 69345427--69345556 Score: 171
Period size: 27 Copynumber: 4.8 Consensus size: 28
69345417 ATTACCAAAG
*
69345427 TACCCTCGATTTACGA-AATTACCGTTT
1 TACCCTCGATTTACTAGAATTACCGTTT
* *
69345454 TACCCTCAATTTA-TAGAATTACCATTT
1 TACCCTCGATTTACTAGAATTACCGTTT
69345481 TACCCTCGATTTA-TAGAATTACCGTTT
1 TACCCTCGATTTACTAGAATTACCGTTT
*
69345508 TACCCTTGATTTAC-AGAATTACCGTTT
1 TACCCTCGATTTACTAGAATTACCGTTT
* *
69345535 TACTCTCGATTTAC-AAAATTAC
1 TACCCTCGATTTACTAGAATTAC
69345557 TAAAATACCC
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 91 0.99
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.39
Consensus pattern (28 bp):
TACCCTCGATTTACTAGAATTACCGTTT
Found at i:69345464 original size:54 final size:54
Alignment explanation
Indices: 69345403--69345513 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
69345393 ACTAAAATGT
*
69345403 CCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACGA-AATTACCGTTTTAC
1 CCTCAATTTATAAAATTACCAAAGTACCCTCGATTTA-GAGAATTACCGTTTTAC
* *** *
69345457 CCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTAC
1 CCTCAATTTATAAAATTACCAAAGTACCCTCGATTTAGAGAATTACCGTTTTAC
69345511 CCT
1 CCT
69345514 TGATTTACAG
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
53 1 0.02
54 49 0.98
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (54 bp):
CCTCAATTTATAAAATTACCAAAGTACCCTCGATTTAGAGAATTACCGTTTTAC
Found at i:69345566 original size:54 final size:54
Alignment explanation
Indices: 69345427--69345585 Score: 147
Period size: 54 Copynumber: 2.9 Consensus size: 54
69345417 ATTACCAAAG
* **** ** *
69345427 TACCCTCGATTTACGAAATTACCGTTTTACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCATTT
* * **** *
69345481 TACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCATTT
* * * *
69345535 TACTCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCA
69345586 AAATACCCCT
Statistics
Matches: 87, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCATTT
Found at i:69345566 original size:81 final size:81
Alignment explanation
Indices: 69345382--69345593 Score: 192
Period size: 81 Copynumber: 2.6 Consensus size: 81
69345372 AATACTTTAG
* ** *
69345382 TTTACCAAATTACTAAAATGTCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACGAAATT
1 TTTACAAAATTACTAAAATACCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACGAAATT
69345447 ACCGTTTTACCCTCAA
66 ACCGTTTTACCCTCAA
* * * *** * * **** *
69345463 TTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTAC-AGAAT
1 TTTACAAAATTACTAAAATACCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACGA-AAT
* *
69345527 TACCGTTTTACTCTCGA
65 TACCGTTTTACCCTCAA
*** * *
69345544 TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCC
1 TTTACAAAATTACTAAAATACCCTCAATTTATAAAATTACCAAAGTACCC
69345594 CTGGCTTGTA
Statistics
Matches: 97, Mismatches: 33, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
80 1 0.01
81 96 0.99
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (81 bp):
TTTACAAAATTACTAAAATACCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACGAAATT
ACCGTTTTACCCTCAA
Found at i:69345656 original size:27 final size:27
Alignment explanation
Indices: 69345549--69345702 Score: 168
Period size: 27 Copynumber: 5.7 Consensus size: 27
69345539 CTCGATTTAC
* * **
69345549 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
*
69345576 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
69345603 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
69345630 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * * *
69345657 GAAATTATCAAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
* *
69345684 AAAA-TATCGAAATACCCCT
1 AAAATTACCAAAATACCCCT
69345703 ATAGGGTAGA
Statistics
Matches: 112, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 12 0.11
27 100 0.89
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:69345717 original size:18 final size:18
Alignment explanation
Indices: 69345694--69345795 Score: 107
Period size: 18 Copynumber: 6.2 Consensus size: 18
69345684 AAAATATCGA
*
69345694 AATACCCCTATAGGGTAG
1 AATACCCCTGTAGGGTAG
69345712 AATACCCCTGTAGGGTAG
1 AATACCCCTGTAGGGTAG
69345730 AATTA--CC------G-A-
1 AA-TACCCCTGTAGGGTAG
69345739 AATACCCCTGTAGGGTAG
1 AATACCCCTGTAGGGTAG
*
69345757 AATACCCTTGTAGGGTAG
1 AATACCCCTGTAGGGTAG
69345775 AATACCCCTGTAGGGTAG
1 AATACCCCTGTAGGGTAG
69345793 AAT
1 AAT
69345796 TACTGAAATA
Statistics
Matches: 70, Mismatches: 3, Indels: 22
0.74 0.03 0.23
Matches are distributed among these distances:
8 2 0.03
9 2 0.03
10 3 0.04
11 1 0.01
16 1 0.01
17 3 0.04
18 56 0.80
19 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (18 bp):
AATACCCCTGTAGGGTAG
Found at i:69345742 original size:45 final size:45
Alignment explanation
Indices: 69345691--69345777 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
69345681 TGTAAAATAT
69345691 CGAAATACCCCTATAGGGTAGAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTATAGGGTAGAATACCCCTGTAGGGTAGAATTAC
* *
69345736 CGAAATACCCCTGTAGGGTAGAATACCCTTGTAGGGTAGAAT
1 CGAAATACCCCTATAGGGTAGAATACCCCTGTAGGGTAGAAT
69345778 ACCCCTGTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (45 bp):
CGAAATACCCCTATAGGGTAGAATACCCCTGTAGGGTAGAATTAC
Found at i:69345793 original size:63 final size:64
Alignment explanation
Indices: 69345694--69345825 Score: 221
Period size: 63 Copynumber: 2.1 Consensus size: 64
69345684 AAAATATCGA
69345694 AATACCCCTATAGGGTAGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTA-G
1 AATACCCCTATAGGGTAGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGG
* * * *
69345757 AATACCCTTGTAGGGTAGAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGG
1 AATACCCCTATAGGGTAGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGG
69345821 AATAC
1 AATAC
69345826 TAAAATATCC
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
63 58 0.91
64 6 0.09
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (64 bp):
AATACCCCTATAGGGTAGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGG
Found at i:69345813 original size:27 final size:27
Alignment explanation
Indices: 69345775--69345879 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
69345765 TGTAGGGTAG
*
69345775 AATACCCCTGTAGGGTAGAATTACTGA
1 AATACCCTTGTAGGGTAGAATTACTGA
*
69345802 AATACCCTTGTAGGGTAGGAA-TACTAA
1 AATACCCTTGTAGGGTA-GAATTACTGA
* * *
69345829 AATATCCTTGTAGGGTAGGATTACCGA
1 AATACCCTTGTAGGGTAGAATTACTGA
* * *
69345856 GATACCCTTGTGGGGTAAAATTAC
1 AATACCCTTGTAGGGTAGAATTAC
69345880 CATTTTGCCC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.03
27 60 0.92
28 3 0.05
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (27 bp):
AATACCCTTGTAGGGTAGAATTACTGA
Found at i:69346121 original size:25 final size:25
Alignment explanation
Indices: 69346083--69346152 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
69346073 AGGAAGTGCT
*
69346083 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
69346108 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
69346133 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69346153 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:69346176 original size:50 final size:50
Alignment explanation
Indices: 69346083--69346177 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
69346073 AGGAAGTGCT
**
69346083 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTACCG
* **
69346133 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
69346178 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.23
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTACCG
Found at i:69348909 original size:93 final size:93
Alignment explanation
Indices: 69348778--69348948 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
69348768 GCCCATAAGT
* * * *
69348778 GAACTTGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69348843 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
69348871 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
69348936 CGAGTTCGGATGC
66 CGAGCTCGGATGC
69348949 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:69348945 original size:46 final size:46
Alignment explanation
Indices: 69348770--69348945 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
69348760 TGTAACCCGC
* * * *
69348770 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
69348816 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
69348862 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
69348909 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
69348946 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
46 69 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:69348964 original size:46 final size:45
Alignment explanation
Indices: 69348821--69348964 Score: 129
Period size: 46 Copynumber: 3.1 Consensus size: 45
69348811 TGCATCCATA
*
69348821 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* *
69348870 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
69348913 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
69348960 AGTGA
1 AGTGA
69348965 CAATTCACTT
Statistics
Matches: 80, Mismatches: 5, Indels: 23
0.74 0.05 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 34 0.43
47 29 0.36
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:69352641 original size:13 final size:13
Alignment explanation
Indices: 69352623--69352648 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69352613 GATTTAACAT
69352623 TTACCATGCAATA
1 TTACCATGCAATA
69352636 TTACCATGCAATA
1 TTACCATGCAATA
69352649 AACTACATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
TTACCATGCAATA
Found at i:69352949 original size:49 final size:49
Alignment explanation
Indices: 69352853--69353009 Score: 199
Period size: 49 Copynumber: 3.2 Consensus size: 49
69352843 GGTTAACAAT
* * * * * * *
69352853 TAACATGCCCTACTAGT-GCCCAGCATATCCGCCATTCTAGTTAGCAAC
1 TAACATGCCCTACTAGTGGCCAATCATATCTGTCAATCTGGATAGCAAC
*
69352901 TAACGTGCCCTACTAGTGGCCAATCATATCTGTCAATCTGGATAGCAAC
1 TAACATGCCCTACTAGTGGCCAATCATATCTGTCAATCTGGATAGCAAC
* * * *
69352950 TAACATGCCCTACCAGTGGCCTATCTTATTTGTCAATCTGGATAGCAAC
1 TAACATGCCCTACTAGTGGCCAATCATATCTGTCAATCTGGATAGCAAC
69352999 TAACATGCCCT
1 TAACATGCCCT
69353010 GCCAATGGCC
Statistics
Matches: 95, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
48 16 0.17
49 79 0.83
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (49 bp):
TAACATGCCCTACTAGTGGCCAATCATATCTGTCAATCTGGATAGCAAC
Found at i:69353019 original size:49 final size:49
Alignment explanation
Indices: 69352894--69353024 Score: 190
Period size: 49 Copynumber: 2.7 Consensus size: 49
69352884 CCATTCTAGT
* * *
69352894 TAGCAACTAACGTGCCCTACTAGTGGCCAATCATATCTGTCAATCTGGA
1 TAGCAACTAACATGCCCTACCAGTGGCCAATCTTATCTGTCAATCTGGA
* *
69352943 TAGCAACTAACATGCCCTACCAGTGGCCTATCTTATTTGTCAATCTGGA
1 TAGCAACTAACATGCCCTACCAGTGGCCAATCTTATCTGTCAATCTGGA
* * *
69352992 TAGCAACTAACATGCCCTGCCAATGGCCCATCT
1 TAGCAACTAACATGCCCTACCAGTGGCCAATCT
69353025 CACTTTTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (49 bp):
TAGCAACTAACATGCCCTACCAGTGGCCAATCTTATCTGTCAATCTGGA
Found at i:69359425 original size:25 final size:24
Alignment explanation
Indices: 69359389--69359441 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
69359379 ACAAATGAAA
69359389 CATTAAAACATACATT-TCATACA-T
1 CATTAAAACAT--ATTATCATACATT
*
69359413 CATTGAAATCATATTATCATACATT
1 CATT-AAAACATATTATCATACATT
69359438 CATT
1 CATT
69359442 CACATACATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 3 0.12
24 11 0.44
25 11 0.44
ACGTcount: A:0.42, C:0.19, G:0.02, T:0.38
Consensus pattern (24 bp):
CATTAAAACATATTATCATACATT
Found at i:69362465 original size:46 final size:48
Alignment explanation
Indices: 69362414--69362546 Score: 170
Period size: 46 Copynumber: 2.8 Consensus size: 48
69362404 ATGGTTGAGC
69362414 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACTAG
* * *
69362461 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTA-G
69362506 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT
69362547 TCCTTATTGA
Statistics
Matches: 73, Mismatches: 5, Indels: 13
0.80 0.05 0.14
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.40
47 29 0.40
48 2 0.03
50 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTAG
Found at i:69364602 original size:15 final size:15
Alignment explanation
Indices: 69364582--69364650 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
69364572 GTATCTTGGG
69364582 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
69364597 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
69364612 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
69364627 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
69364642 TTTCTTTAT
1 TTTCTTTAT
69364651 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:69364651 original size:30 final size:30
Alignment explanation
Indices: 69364573--69364660 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
69364563 CATAGTATCG
* * * *
69364573 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
69364603 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
69364633 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
69364661 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:69367092 original size:46 final size:46
Alignment explanation
Indices: 69367042--69367170 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
69367032 ATGGTTGGCA
*
69367042 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
69367088 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
69367134 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69367171 GCGGGTTACA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:69368567 original size:47 final size:46
Alignment explanation
Indices: 69368496--69368651 Score: 131
Period size: 46 Copynumber: 3.4 Consensus size: 46
69368486 TATTTGTGTA
* * *
69368496 CTAGTGTAAAACATGTCTGGGACATGGCATCGGCATTGAGATG-AGAG
1 CTAGTGTAAGACATGTCTGAGACAT-GCATCGGCATCGAGATGTA-AG
* * *
69368543 CTAGTGCAAGACATGTCTGAGACATGCATTGGCCTCGAGATGTAAG
1 CTAGTGTAAGACATGTCTGAGACATGCATCGGCATCGAGATGTAAG
* * ** * *
69368589 CCAGTGTAAGACATGTTTGCCACATCCATCAGCTAT-GAGATGT--G
1 CTAGTGTAAGACATGTCTGAGACATGCATCGGC-ATCGAGATGTAAG
*
69368633 TTAGTGTAAGACCATGTCT
1 CTAGTGTAAGA-CATGTCT
69368652 TATAGAGGTG
Statistics
Matches: 88, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
44 10 0.11
45 6 0.07
46 48 0.55
47 24 0.27
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGAGACATGCATCGGCATCGAGATGTAAG
Found at i:69368779 original size:47 final size:49
Alignment explanation
Indices: 69368663--69368789 Score: 161
Period size: 47 Copynumber: 2.6 Consensus size: 49
69368653 ATAGAGGTGT
* * * *
69368663 CAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCGATTGCGATAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGACTCGATTGCGATAGC
* *
69368712 CAGTGTAAGACCATGCCTGGGACATGGCATC-GACTTGA-TG-GATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGACTCGATTGCGAT-AGC
*
69368759 CAGTGAAAGACCATGTCTGGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
69368790 AGCATCATAC
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 3 0.04
47 33 0.48
48 5 0.07
49 28 0.41
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGACTCGATTGCGATAGC
Found at i:69377549 original size:48 final size:48
Alignment explanation
Indices: 69377448--69377816 Score: 261
Period size: 46 Copynumber: 7.8 Consensus size: 48
69377438 TTATTTGTGT
*
69377448 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT---ATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAG---CATTGAGATGAGA
* *
69377494 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGAGA
* * *
69377542 GCTAGTGTAAGACC-TGTCTAGGACAT-GCATCAGCCTCGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATG-AGA
* * ** *
69377588 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATTTGC-TATGAGATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT-TGAGATGAGA
* * * *
69377633 TC-AGTGTAAGACCTTGTCTGGGACATGGCATCGGCACGTAT-AGA-G-GT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCA--T-TGAGATGAGA
* * *
69377680 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGAATATCTGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTG-AGA--TGAGA
* * * * ** *
69377730 GCTAGTGTCAGACCATGTTTGGGACATGGCATCAACCTTGATTTTGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGA-GATGAGA
*
69377779 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT
69377817 CATACCCTAT
Statistics
Matches: 261, Mismatches: 36, Indels: 49
0.75 0.10 0.14
Matches are distributed among these distances:
44 9 0.03
45 19 0.07
46 70 0.27
47 27 0.10
48 60 0.23
49 41 0.16
50 32 0.12
51 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGAGA
Found at i:69377595 original size:46 final size:46
Alignment explanation
Indices: 69377451--69377814 Score: 213
Period size: 48 Copynumber: 7.7 Consensus size: 46
69377441 TTTGTGTGCT
* * * *
69377451 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGCATCAGCCTCGA-GATGAGAGCC
* * * *
69377497 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGAGCT
1 AGTGTAAGACC-TGTCTGGGACAT-GCATCAGCCTCGAGATGAGAGCC
*
69377545 AGTGTAAGACCTGTCTAGGACATGCATCAGCCTCGAGATGTA-AGCC
1 AGTGTAAGACCTGTCTGGGACATGCATCAGCCTCGAGATG-AGAGCC
* * ** * * *
69377591 AGTGTAAGACATGTCTAGGACATGCATTTG-CTATGAGAT--GTGTC
1 AGTGTAAGACCTGTCTGGGACATGCATCAGCCT-CGAGATGAGAGCC
* * * * *
69377635 AGTGTAAGACCTTGTCTGGGACATGGCATC-GGCACG-TATAGAGGTGTC
1 AGTGTAAGACC-TGTCTGGGACAT-GCATCAGCCTCGAGAT-GA-GAGCC
* * * *
69377683 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCACGAATATCTGAGAGCT
1 AGTGTAAGACC-TGTCTGGGACAT-GCATCAGCCTCG-AGA--TGAGAGCC
* * * * ** *
69377733 AGTGTCAGACCATGTTTGGGACATGGCATCAACCTTGATTTTGATAGCC
1 AGTGTAAGACC-TGTCTGGGACAT-GCATCAGCCTCGA-GATGAGAGCC
69377782 AGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 AGTGTAAGACC-TGTCTGGGACAT-GCATCAGC
69377815 ATCATACCCT
Statistics
Matches: 258, Mismatches: 41, Indels: 35
0.77 0.12 0.10
Matches are distributed among these distances:
44 14 0.05
45 15 0.06
46 64 0.25
47 24 0.09
48 65 0.25
49 37 0.14
50 33 0.13
51 5 0.02
52 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCTGTCTGGGACATGCATCAGCCTCGAGATGAGAGCC
Found at i:69379160 original size:41 final size:41
Alignment explanation
Indices: 69379113--69379318 Score: 234
Period size: 41 Copynumber: 5.0 Consensus size: 41
69379103 AAGTGCATTT
* *
69379113 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGAAATTC
1 AGGGGTATCGAAGTACAAACAGGAGCACGTATGTGAAATTC
* * * * *
69379154 AAGGGTACCAAAGTACAAACAAGAGCATGTATGT-ACAATTC
1 AGGGGTATCGAAGTACAAACAGGAGCACGTATGTGA-AATTC
* * * * ** *
69379195 AGGGGTATCGAAGTACAAATAGGGGCACATATTTTTAATTT
1 AGGGGTATCGAAGTACAAACAGGAGCACGTATGTGAAATTC
* * *
69379236 AGGGGTATCGAAGTACAAATAGGAGCATGTATGTGCAATTC
1 AGGGGTATCGAAGTACAAACAGGAGCACGTATGTGAAATTC
*
69379277 AGGGGTATCGAAGTACAAACAGGAGCACGTATGTGCAATTC
1 AGGGGTATCGAAGTACAAACAGGAGCACGTATGTGAAATTC
69379318 A
1 A
69379319 ACAATAATCT
Statistics
Matches: 138, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
40 1 0.01
41 137 0.99
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.22
Consensus pattern (41 bp):
AGGGGTATCGAAGTACAAACAGGAGCACGTATGTGAAATTC
Found at i:69379212 original size:21 final size:20
Alignment explanation
Indices: 69379186--69379294 Score: 53
Period size: 21 Copynumber: 5.3 Consensus size: 20
69379176 GAGCATGTAT
69379186 GTACAATTCAGGGGTATCGAA
1 GTACAATT-AGGGGTATCGAA
* *
69379207 GTACAAATAGGGGCA-C-ATA
1 GTACAATTAGGGGTATCGA-A
* **
69379226 TTTTTAATTTAGGGGTATCGAA
1 -GTACAA-TTAGGGGTATCGAA
* * * *
69379248 GTACAAATAGGAGCAT-GTAT
1 GTACAATTAGGGGTATCG-AA
*
69379268 GTGCAATTCAGGGGTATCGAA
1 GTACAATT-AGGGGTATCGAA
69379289 GTACAA
1 GTACAA
69379295 ACAGGAGCAC
Statistics
Matches: 60, Mismatches: 20, Indels: 16
0.62 0.21 0.17
Matches are distributed among these distances:
18 1 0.02
19 3 0.05
20 23 0.38
21 29 0.48
22 3 0.05
23 1 0.02
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.27
Consensus pattern (20 bp):
GTACAATTAGGGGTATCGAA
Found at i:69379250 original size:82 final size:82
Alignment explanation
Indices: 69379113--69379319 Score: 270
Period size: 82 Copynumber: 2.5 Consensus size: 82
69379103 AAGTGCATTT
* *
69379113 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGAAATTCAAGGGTACCAAAGTACAAACAAGA
1 AGGGGTATCGAAGTACAAACAGGGGCACATATGTGAAATTCAAGGGTACCAAAGTACAAACAAGA
69379178 GCATGTATGTACAATTC
66 GCATGTATGTACAATTC
* * ** * * * * * *
69379195 AGGGGTATCGAAGTACAAATAGGGGCACATATTTTTAATTTAGGGGTATCGAAGTACAAATAGGA
1 AGGGGTATCGAAGTACAAACAGGGGCACATATGTGAAATTCAAGGGTACCAAAGTACAAACAAGA
*
69379260 GCATGTATGTGCAATTC
66 GCATGTATGTACAATTC
* * *
69379277 AGGGGTATCGAAGTACAAACAGGAGCACGTATGTGCAATTCAA
1 AGGGGTATCGAAGTACAAACAGGGGCACATATGTGAAATTCAA
69379320 CAATAATCTT
Statistics
Matches: 104, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
82 104 1.00
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (82 bp):
AGGGGTATCGAAGTACAAACAGGGGCACATATGTGAAATTCAAGGGTACCAAAGTACAAACAAGA
GCATGTATGTACAATTC
Found at i:69388839 original size:28 final size:27
Alignment explanation
Indices: 69388776--69388845 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
69388766 ATAGTGAGTC
69388776 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
69388803 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
69388831 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69388846 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:69396822 original size:28 final size:27
Alignment explanation
Indices: 69396759--69396828 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
69396749 ATAGTGAGTC
69396759 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
69396786 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
69396814 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69396829 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:69401029 original size:24 final size:24
Alignment explanation
Indices: 69400999--69401169 Score: 288
Period size: 24 Copynumber: 7.1 Consensus size: 24
69400989 GAATGTGACT
* *
69400999 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
69401023 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
69401047 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
**
69401071 ATAGTGTATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
69401095 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
69401119 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
69401143 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
69401167 ATA
1 ATA
69401170 TGGTCTTTGC
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 140 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:69408958 original size:24 final size:24
Alignment explanation
Indices: 69408928--69409098 Score: 288
Period size: 24 Copynumber: 7.1 Consensus size: 24
69408918 GAATGTGACT
* *
69408928 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
69408952 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
69408976 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
**
69409000 ATAGTGTATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
69409024 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
69409048 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
69409072 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
69409096 ATA
1 ATA
69409099 TGGTCTTTGC
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 140 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:69419657 original size:23 final size:24
Alignment explanation
Indices: 69419612--69419657 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
69419602 TAACAGGTAG
69419612 CTCACAAAGAGCCATATCAAGAAC
1 CTCACAAAGAGCCATATCAAGAAC
*
69419636 CTCACAAAGAGCC-TATCGAGAA
1 CTCACAAAGAGCCATATCAAGAA
69419658 GCTTATCTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.43, C:0.28, G:0.15, T:0.13
Consensus pattern (24 bp):
CTCACAAAGAGCCATATCAAGAAC
Found at i:69419785 original size:50 final size:48
Alignment explanation
Indices: 69419674--69419818 Score: 130
Period size: 50 Copynumber: 2.9 Consensus size: 48
69419664 CTGGACTATA
* * * * * *
69419674 TAACGGGAAGCTCATGAGAGCCGTAATTGAGAAGTTCAAAAAGAACTTT
1 TAACAGGAAGCTCATGAGAGCC-TAATCGGGAAGCTCACAAAGAACATT
*
69419723 TAATCAGAAAGCTCATGATGAGCCT-ATCGGGAAGCTCACAAAGAGACAATT
1 TAA-CAGGAAGCTCATGA-GAGCCTAATCGGGAAGCTCACAAAGA-AC-ATT
* * *
69419774 TAACAGGAAGCTCACGAAAAGCCTAATTCGGGAAGCTCACGAAGA
1 TAACAGGAAGCTCATG-AGAGCCTAA-TCGGGAAGCTCACAAAGA
69419819 TCAATATAAT
Statistics
Matches: 78, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
49 18 0.23
50 31 0.40
51 12 0.15
52 17 0.22
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (48 bp):
TAACAGGAAGCTCATGAGAGCCTAATCGGGAAGCTCACAAAGAACATT
Found at i:69429020 original size:93 final size:93
Alignment explanation
Indices: 69428908--69429078 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
69428898 GCCCATAAGT
*
69428908 GAACTCGGACTCAACTCAACGAGCTCTGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69428972 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
69429001 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69429066 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69429079 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69429073 original size:46 final size:46
Alignment explanation
Indices: 69428900--69429075 Score: 218
Period size: 46 Copynumber: 3.8 Consensus size: 46
69428890 TGTAACCCGC
* *
69428900 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCTGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
*
69428946 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
69428996 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
69429039 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69429076 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 62 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69432052 original size:40 final size:40
Alignment explanation
Indices: 69432015--69432200 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
69432005 GCTACTCGTT
*
69432015 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
69432055 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
69432095 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
69432135 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69432176 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69432201 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69440198 original size:40 final size:40
Alignment explanation
Indices: 69440161--69440346 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
69440151 GCTACTCGTT
*
69440161 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
69440201 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
69440241 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
69440281 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69440322 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69440347 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69444875 original size:19 final size:19
Alignment explanation
Indices: 69444851--69444903 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
69444841 AAAAGCTATA
*
69444851 TGTTATACT-GATGAATTAC
1 TGTTATA-TGGATGAAGTAC
69444870 TGTTATATGGATGAAGTAC
1 TGTTATATGGATGAAGTAC
* *
69444889 TATTTAAATGGATGA
1 T-GTTATATGGATGA
69444904 GTTAATGATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 1 0.03
19 17 0.59
20 11 0.38
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.40
Consensus pattern (19 bp):
TGTTATATGGATGAAGTAC
Found at i:69449687 original size:29 final size:29
Alignment explanation
Indices: 69449655--69449711 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
69449645 GTTCATATTC
*
69449655 ATATGGCCCATTAGGCCCAAATCACCTTT
1 ATATGGCCCACTAGGCCCAAATCACCTTT
* *
69449684 ATATGGCTCGCTAGGCCCAAATCACCTT
1 ATATGGCCCACTAGGCCCAAATCACCTT
69449712 GTATTCATGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAAATCACCTTT
Found at i:69451231 original size:16 final size:16
Alignment explanation
Indices: 69451206--69451237 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69451196 AAGTTCAGGA
*
69451206 TTTCAGGATTTTTGGG
1 TTTCAAGATTTTTGGG
69451222 TTTCAAGATTTTTGGG
1 TTTCAAGATTTTTGGG
69451238 GCGTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (16 bp):
TTTCAAGATTTTTGGG
Found at i:69454216 original size:29 final size:28
Alignment explanation
Indices: 69454144--69454216 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
69454134 GCCCAATCTC
*
69454144 ATTCATGTGGCCCATCGGGCCCAATTCAT
1 ATTCAT-TGGCCCATCAGGCCCAATTCAT
*
69454173 ATTCATTCTGCCCATCAGGCCCAATTCAT
1 ATTCATT-GGCCCATCAGGCCCAATTCAT
*
69454202 ATTCATATGGTCCAT
1 ATTCAT-TGGCCCAT
69454217 TATGCCAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 36 0.95
30 1 0.03
ACGTcount: A:0.23, C:0.30, G:0.15, T:0.32
Consensus pattern (28 bp):
ATTCATTGGCCCATCAGGCCCAATTCAT
Found at i:69454238 original size:29 final size:29
Alignment explanation
Indices: 69454206--69454262 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
69454196 ATTCATATTC
* * *
69454206 ATATGGTCCATTATGCCAAAATCACCTTT
1 ATATGGCCCACTAGGCCAAAATCACCTTT
*
69454235 ATATGGCCCACTAGGCCCAAATCACCTT
1 ATATGGCCCACTAGGCCAAAATCACCTT
69454263 GTATTCATGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.28
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCAAAATCACCTTT
Found at i:69464259 original size:49 final size:51
Alignment explanation
Indices: 69464182--69464302 Score: 147
Period size: 49 Copynumber: 2.4 Consensus size: 51
69464172 TATTGTGAGG
* * * * *
69464182 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAA-TT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGA
* * *
69464231 TCGCATGTGTAGTAGTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGA
*
69464282 TCACGTGTGTAGTACTAAGTG
1 TCACATGTGTAGTACTAAGTG
69464303 AAGGACTATG
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 38 0.64
50 2 0.03
51 19 0.32
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (51 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGA
Found at i:69464459 original size:215 final size:215
Alignment explanation
Indices: 69464088--69464517 Score: 745
Period size: 215 Copynumber: 2.0 Consensus size: 215
69464078 CAAATTGAAA
69464088 AAGGACTATGAATAAATTTGTAACATGTTGGAAAGTGAGGAATTTCCCGGTTGAGCCTTCGGAAT
1 AAGGACTATGAATAAATTTGTAACATGTTGGAAAGTGAGGAATTTCCCGGTTGAGCCTTCGGAAT
* * * *
69464153 AGAAACGATACGAATGATCTATTGTGAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGT
66 AGAAACAATACGAATGATCTATTGTAAGGTCACGTGTATAGTACTAAGTGTAGGCTACTACGTAT
* * *
69464218 ACCGGATAATTGGTCGCATGTGTAGTAGTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGAT
131 ACCAGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTTCGAT
69464283 CACGTGTGTAGTACTAAGTG
196 CACGTGTGTAGTACTAAGTG
*
69464303 AAGGACTATGAATAAATTTGTAACATGTTGGAAAGTGAGGAATTTCTCGGTTGAGCCTTCGGAAT
1 AAGGACTATGAATAAATTTGTAACATGTTGGAAAGTGAGGAATTTCCCGGTTGAGCCTTCGGAAT
*
69464368 AGAAACAATATGAATGATCTATTGTAAGGTCACGTGTATAGTACTAAGTGCTA-GCTACTACGTA
66 AGAAACAATACGAATGATCTATTGTAAGGTCACGTGTATAGTACTAAGTG-TAGGCTACTACGTA
* *
69464432 TACCAGATAATTGGTCGTATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCAATAACTTCGA
130 TACCAGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTTCGA
69464497 TCACGTGTGTAGTACTAAGTG
195 TCACGTGTGTAGTACTAAGTG
69464518 CAGGCTAATA
Statistics
Matches: 203, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
215 201 0.99
216 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (215 bp):
AAGGACTATGAATAAATTTGTAACATGTTGGAAAGTGAGGAATTTCCCGGTTGAGCCTTCGGAAT
AGAAACAATACGAATGATCTATTGTAAGGTCACGTGTATAGTACTAAGTGTAGGCTACTACGTAT
ACCAGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTTCGAT
CACGTGTGTAGTACTAAGTG
Found at i:69464585 original size:101 final size:98
Alignment explanation
Indices: 69464397--69464619 Score: 241
Period size: 100 Copynumber: 2.2 Consensus size: 98
69464387 TATTGTAAGG
* * * **
69464397 TCACGTGTATAGTACTAAGTGCTA-GCTACTACGTATACCAGATAATTGGTCGTATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGC-AGGCTAATACATATACCAGATAATTGGTCACATGTGTAGTAC
* *
69464461 TAAGTGTAGGCTACTATGCGTACCCAATAACTTCGA
65 TAAGTGCAGGCTACTACGCGTACCCAATAA-TT-GA
* * **
69464497 TCACGTGTGTAGTACTAAGTGCAGGCTAATACATGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTAATACATATACCAGATAATT-GGTCACATGTGTAGTAC
* ** *
69464562 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCCAATAATTGA
* * *
69464596 CCGCATGTGTAGTACTAAGTGCAG
1 TCACGTGTGTAGTACTAAGTGCAG
69464620 TCTAGTATGT
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
99 23 0.22
100 40 0.39
101 40 0.39
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTAATACATATACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCCAATAATTGA
Found at i:69464632 original size:49 final size:50
Alignment explanation
Indices: 69464394--69464633 Score: 227
Period size: 49 Copynumber: 4.8 Consensus size: 50
69464384 ATCTATTGTA
* * *
69464394 AGGTCACGTGTATAGTACTAAGTGCTA-GCTACTACGTATACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGC-AGGCTACTACGTGTACCAGATAATT
** * * *
69464444 -GGTCGTATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCA-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-TT
* * * * * * **
69464494 CGATCACGTGTGTAGTACTAAGTGCAGGCTAATACATGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
69464544 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
69464594 -GGCCGCATGTGTAGTACTAAGTGCAGTCTAGTATGTGTAC
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
69464634 TAAATAGCCT
Statistics
Matches: 151, Mismatches: 34, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
48 1 0.01
49 68 0.45
50 50 0.33
51 32 0.21
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:69470540 original size:52 final size:49
Alignment explanation
Indices: 69470425--69470596 Score: 188
Period size: 52 Copynumber: 3.4 Consensus size: 49
69470415 ACTAGTGACT
* * *
69470425 CAAGTGTGGTACTATGTGAAGGCTACTTTGAGTAG-AGATAGCTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGC-ACTTTGTGAAGAAGATAGTTTGGTCA
69470474 CAAGTG-GAGTACTATGTGAAGGACACTTTGTGAAGAAAGATAGTTTTGGTCA
1 CAAGTGTG-GTACTATGTGAAGG-CACTTTGTGAAG-AAGATAG-TTTGGTCA
* * *
69470526 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGG-CACTTTGTGAAGAAGATAG-TTTGGTC-A
*
69470577 CAAGGGTGGTACTATGTGAA
1 CAAGTGTGGTACTATGTGAA
69470597 TAAGTGCAGG
Statistics
Matches: 107, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
48 1 0.01
49 29 0.27
50 3 0.03
51 35 0.33
52 38 0.36
53 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.30, T:0.30
Consensus pattern (49 bp):
CAAGTGTGGTACTATGTGAAGGCACTTTGTGAAGAAGATAGTTTGGTCA
Found at i:69482039 original size:46 final size:46
Alignment explanation
Indices: 69481986--69482161 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
69481976 TATTTGGGCA
69481986 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
69482032 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
69482079 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
69482125 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69482162 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:69482141 original size:93 final size:93
Alignment explanation
Indices: 69481982--69482153 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69481972 GGGATATTTG
* *
69481982 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69482047 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
69482075 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69482140 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
69482154 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:69489794 original size:27 final size:27
Alignment explanation
Indices: 69489764--69489828 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
69489754 GATCACTGAA
* *
69489764 CACTTTGCTATGTTTGGCACACTATAT
1 CACTTTGCCATGATTGGCACACTATAT
*
69489791 CACTTTGCCATGATTGGCACACTTTAT
1 CACTTTGCCATGATTGGCACACTATAT
69489818 CACTTTGCCAT
1 CACTTTGCCAT
69489829 AGTTCAACTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (27 bp):
CACTTTGCCATGATTGGCACACTATAT
Found at i:69489964 original size:31 final size:31
Alignment explanation
Indices: 69489919--69490065 Score: 215
Period size: 31 Copynumber: 4.7 Consensus size: 31
69489909 TTGTCACTTT
* *
69489919 TAGCCAAAGCTACCACTATTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
* *
69489950 TAGCTGGAGCTACCACTTTTCACT-AGTCAGG
1 TAGCCGAAGCTACCACTTTTCACTGA-TCAGG
* *
69489981 TAGCCGAAGCTACTACTTTTCACTGATCAAG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
69490012 TAGCCGAAGCTACCACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
*
69490043 TATCCGAAGCTACCACTTTTCAC
1 TAGCCGAAGCTACCACTTTTCAC
69490066 ATTGTACACA
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
30 1 0.01
31 101 0.98
32 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (31 bp):
TAGCCGAAGCTACCACTTTTCACTGATCAGG
Found at i:69490142 original size:33 final size:33
Alignment explanation
Indices: 69490058--69490170 Score: 149
Period size: 33 Copynumber: 3.5 Consensus size: 33
69490048 GAAGCTACCA
* *
69490058 CTTTTCACA-TTGTACACACAAGGCGTACATTTC
1 CTTTTCA-AGTTGTACACACAAAGTGTACATTTC
*
69490091 CTTTTCAAG-TGTACACACAAAGTGTACGTTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
* *
69490123 CTTTTTAAGTTGTACACACACAGTGTACATTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
*
69490156 CTTTTCCAGTTGTAC
1 CTTTTCAAGTTGTAC
69490171 CTTTTAGGTA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
32 29 0.41
33 41 0.59
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (33 bp):
CTTTTCAAGTTGTACACACAAAGTGTACATTTC
Found at i:69491827 original size:11 final size:11
Alignment explanation
Indices: 69491807--69491856 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
69491797 TATACTAAAT
*
69491807 AAATAATAATA
1 AAATATTAATA
69491818 AAATATTAAT-
1 AAATATTAATA
*
69491828 AAATATCTCATTA
1 AAATAT-T-AATA
69491841 AAATATTAATA
1 AAATATTAATA
69491852 AAATA
1 AAATA
69491857 ATATTTATCT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
10 6 0.18
11 18 0.55
12 3 0.09
13 6 0.18
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (11 bp):
AAATATTAATA
Found at i:69494991 original size:18 final size:18
Alignment explanation
Indices: 69494968--69495003 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
69494958 AATTTTTCTC
*
69494968 CCCTTTCCTCTTCCCCTT
1 CCCTTTCCCCTTCCCCTT
69494986 CCCTTTCCCCTTCCCCTT
1 CCCTTTCCCCTTCCCCTT
69495004 AGGTTGCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (18 bp):
CCCTTTCCCCTTCCCCTT
Found at i:69494993 original size:12 final size:13
Alignment explanation
Indices: 69494966--69495000 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
69494956 AAAATTTTTC
*
69494966 TCCCCTTTCCTCT
1 TCCCCTTCCCTCT
69494979 TCCCCTTCCCT-T
1 TCCCCTTCCCTCT
69494991 TCCCCTTCCC
1 TCCCCTTCCC
69495001 CTTAGGTTGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (13 bp):
TCCCCTTCCCTCT
Found at i:69497230 original size:28 final size:28
Alignment explanation
Indices: 69497198--69497267 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
69497188 AATAAGATTG
*
69497198 GCACTAAGTGTGTGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTCAATAT-TA-A
*
69497226 GCACTAAGTGTGCGAGTTTCACTATTAA
1 GCACTAAGTGTGCGAGTTTCAATATTAA
69497254 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69497268 GACTTACTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
28 33 0.87
29 4 0.11
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTCAATATTAA
Found at i:69501909 original size:15 final size:16
Alignment explanation
Indices: 69501884--69501913 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
69501874 CTTCTTCACT
69501884 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
69501900 TACT-ACTTACTTAA
1 TACTCACTTACTTAA
69501914 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.37, C:0.23, G:0.00, T:0.40
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:69502293 original size:55 final size:53
Alignment explanation
Indices: 69502163--69502302 Score: 174
Period size: 55 Copynumber: 2.6 Consensus size: 53
69502153 ATTACCATTG
* *
69502163 CATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
1 CATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGC
* * * * *
69502216 CATGCCTTGTCATGGTCTTACATGGGA-CCTTTGCCTTATAGTGACTTATCAATGC
1 CATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATGC
*
69502271 CATGTCTTGACATGGTCTTACATGGTATCCTT
1 CATGTCTTGACATGGTCTTACATGGGATCCTT
69502303 AAACCCTAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.03
53 32 0.44
54 1 0.01
55 36 0.49
56 2 0.03
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGC
Found at i:69502670 original size:31 final size:31
Alignment explanation
Indices: 69502635--69502694 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
69502625 TCCTTAACTC
69502635 AAAC-TTTAGCAAAATTACACTTTTGCCCCTT
1 AAACTTTTA-CAAAATTACACTTTTGCCCCTT
* * *
69502666 AAACTTTTACATATTTACATTTTTGCCCC
1 AAACTTTTACAAAATTACACTTTTGCCCC
69502695 AAGCTCGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 21 0.84
32 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (31 bp):
AAACTTTTACAAAATTACACTTTTGCCCCTT
Found at i:69505215 original size:26 final size:27
Alignment explanation
Indices: 69505164--69505217 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
69505154 TTGCCTCAAG
*
69505164 TTCAAATCTTTTTGAGTCATTAAATAT
1 TTCAAATCTTTTTGAGTCAGTAAATAT
*
69505191 TTCAAA-CTTTTGTGA-TCAGTGAATAT
1 TTCAAATCTTTT-TGAGTCAGTAAATAT
69505217 T
1 T
69505218 CAGCACTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.46
Consensus pattern (27 bp):
TTCAAATCTTTTTGAGTCAGTAAATAT
Found at i:69509411 original size:16 final size:16
Alignment explanation
Indices: 69509392--69509422 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69509382 CTTCTTCACT
69509392 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
69509408 TACTTACTTACTTAA
1 TACTCACTTACTTAA
69509423 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:69509428 original size:20 final size:20
Alignment explanation
Indices: 69509389--69509428 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
69509379 AAACTTCTTC
* *
69509389 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
69509409 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
69509429 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:69509804 original size:55 final size:53
Alignment explanation
Indices: 69509682--69509819 Score: 179
Period size: 55 Copynumber: 2.6 Consensus size: 53
69509672 GCCATGTCTC
** **
69509682 GACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACTAATGCCATGCCTT
1 GACATGGTCTTACATGGTATCCTTGCCTTATGAACTCAAAAATGCCATGAATT
* * *
69509735 GGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTAAAAATGCCATGAATT
1 GACATGGTCTTACATGGTATCC-TTGCCTTAT-G-AACTCAAAAATGCCATGAATT
69509790 GACATGGTCTTACATGGTATCCTTGCCTTA
1 GACATGGTCTTACATGGTATCCTTGCCTTA
69509820 GAAGCCTTAC
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
52 2 0.03
53 26 0.36
54 1 0.01
55 41 0.57
56 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (53 bp):
GACATGGTCTTACATGGTATCCTTGCCTTATGAACTCAAAAATGCCATGAATT
Found at i:69509861 original size:54 final size:52
Alignment explanation
Indices: 69509614--69509867 Score: 239
Period size: 53 Copynumber: 4.8 Consensus size: 52
69509604 ACACGGGTAC
* * *
69509614 CTTACCATTGCCATGACTTGTCATGGTCTTACGTAGTATCCTT---TT-GAAA
1 CTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTGCCTTAG-AA
* *
69509663 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAA
* * * * * *
69509716 CTCACTAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAG-AA
** * *
69509771 CTTAAAAATGCCATGAATTGACATGGTCTTACATGGTATCCTTGCCTTAGAA
1 CTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTGCCTTAGAA
* * *
69509823 GCCTTACCATTGCGATGCCTTGGCATGGTCTTACATGGTATCCTT
1 --CTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTT
69509868 AAACTTTAAT
Statistics
Matches: 167, Mismatches: 26, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
52 6 0.04
53 41 0.25
54 40 0.24
55 40 0.24
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (52 bp):
CTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTGCCTTAGAA
Found at i:69510237 original size:30 final size:30
Alignment explanation
Indices: 69510203--69510261 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
69510193 TCATTGACTC
*
69510203 AAACTTTGGCAAAATTACACTTTTTCCCCT
1 AAACTTTGACAAAATTACACTTTTTCCCCT
* * *
69510233 AAACTTTTACATACTTACACTTTTTCCCC
1 AAACTTTGACAAAATTACACTTTTTCCCC
69510262 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.03, T:0.39
Consensus pattern (30 bp):
AAACTTTGACAAAATTACACTTTTTCCCCT
Found at i:69518657 original size:16 final size:16
Alignment explanation
Indices: 69518627--69518660 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
69518617 CTACTTTATA
69518627 TTTTGTTGAAGTTTTT
1 TTTTGTTGAAGTTTTT
69518643 TTTTAGTTGAA-TTTTT
1 TTTT-GTTGAAGTTTTT
69518659 TT
1 TT
69518661 AAAGTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.71
Consensus pattern (16 bp):
TTTTGTTGAAGTTTTT
Found at i:69521714 original size:43 final size:43
Alignment explanation
Indices: 69521667--69521818 Score: 179
Period size: 43 Copynumber: 3.6 Consensus size: 43
69521657 TCTTAGATGT
69521667 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAG
* * * *
69521710 GGTCTTACACG-AATCAAATA-CGATGTCGA-TGTCCCAGACAT
1 GGTCTTACATGTAATCACATATCGATG-CCACTGTCCCAGACAG
*
69521751 GGTCTTACATGTAATCACATGTCGATGCCAAC-GTCCCAGAC-G
1 GGTCTTACATGTAATCACATATCGATGCC-ACTGTCCCAGACAG
* *
69521793 TGGTCTTACATGAAAACACATATCGA
1 -GGTCTTACATGTAATCACATATCGA
69521819 AAATCCTATG
Statistics
Matches: 91, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
41 26 0.29
42 18 0.20
43 47 0.52
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAG
Found at i:69524567 original size:48 final size:49
Alignment explanation
Indices: 69524483--69524615 Score: 141
Period size: 48 Copynumber: 2.8 Consensus size: 49
69524473 AGGGGATATA
* *
69524483 TTGATTTGGCTTCGGGCCATGATATCGGCACTTTGGGTCCG-AGTT-AC
1 TTGATTTGGCTTCGGGCCATGATATAGGCACTTTGGGTCCGAACTTCAC
* * * *
69524530 TTTGATTTGGCTTCGGGTCATGATATATGTA-TCTTGGGTGCGAACTTCAC
1 -TTGATTTGGCTTCGGGCCATGATATAGGCACT-TTGGGTCCGAACTTCAC
*
69524580 -TGATTTGGCTACGGGCCATGATATTA-GCACTTTGGG
1 TTGATTTGGCTTCGGGCCATGATA-TAGGCACTTTGGG
69524616 CGCGAGATAT
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
47 1 0.01
48 62 0.87
49 6 0.08
50 2 0.03
ACGTcount: A:0.17, C:0.18, G:0.29, T:0.36
Consensus pattern (49 bp):
TTGATTTGGCTTCGGGCCATGATATAGGCACTTTGGGTCCGAACTTCAC
Found at i:69534288 original size:8 final size:8
Alignment explanation
Indices: 69534275--69534325 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
69534265 ACAAAAGCTA
69534275 AAATGCCG
1 AAATGCCG
69534283 AAATGCCG
1 AAATGCCG
69534291 AAATGCCG
1 AAATGCCG
* *
69534299 AAAAGCCA
1 AAATGCCG
**
69534307 AAATGTTG
1 AAATGCCG
*
69534315 AAAAGCCG
1 AAATGCCG
69534323 AAA
1 AAA
69534326 GTTTGGCTAC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.47, C:0.20, G:0.22, T:0.12
Consensus pattern (8 bp):
AAATGCCG
Found at i:69534296 original size:16 final size:16
Alignment explanation
Indices: 69534275--69534325 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
69534265 ACAAAAGCTA
*
69534275 AAATGCCGAAATGCCG
1 AAATGCCGAAAAGCCG
*
69534291 AAATGCCGAAAAGCCA
1 AAATGCCGAAAAGCCG
**
69534307 AAATGTTGAAAAGCCG
1 AAATGCCGAAAAGCCG
69534323 AAA
1 AAA
69534326 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.47, C:0.20, G:0.22, T:0.12
Consensus pattern (16 bp):
AAATGCCGAAAAGCCG
Found at i:69534590 original size:29 final size:29
Alignment explanation
Indices: 69534548--69534616 Score: 102
Period size: 29 Copynumber: 2.4 Consensus size: 29
69534538 TGAATGTGGC
* *
69534548 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
**
69534577 TGGGCCTAATGGGCCATATTCAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
69534606 TGGGCCTAATG
1 TGGGCCTAATG
69534617 CCTATATGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:69538808 original size:16 final size:16
Alignment explanation
Indices: 69538750--69538804 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
69538740 ATGAATCGAC
**
69538750 AAAAGCCAAAATGCCG
1 AAAAGCCAAAATGATG
*
69538766 AAATGCCAAAATGATG
1 AAAAGCCAAAATGATG
* *
69538782 AAAAGCCGAAATGTTG
1 AAAAGCCAAAATGATG
69538798 AAAAGCC
1 AAAAGCC
69538805 GAAAGTTTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.49, C:0.18, G:0.20, T:0.13
Consensus pattern (16 bp):
AAAAGCCAAAATGATG
Found at i:69539078 original size:29 final size:29
Alignment explanation
Indices: 69539032--69539133 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
69539022 TGAATGTGGC
*
69539032 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* **
69539061 TGGGCCTAATGGGACATATTCA-GCTGATT
1 TGGGCCTAATGGGCCATATAAATG-TGATT
* **
69539090 TGGGCCTAATGGGCCATATGAATAAGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
69539118 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
69539134 GATACAGGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
28 17 0.28
29 44 0.72
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:69542045 original size:16 final size:17
Alignment explanation
Indices: 69542024--69542060 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
69542014 TGTAACGCCT
*
69542024 CAAAAATCTCGAAA-CC
1 CAAAAATCTCAAAATCC
69542040 CAAAAATCTCAAAATCC
1 CAAAAATCTCAAAATCC
69542057 CAAA
1 CAAA
69542061 CTTTTCTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.54, C:0.30, G:0.03, T:0.14
Consensus pattern (17 bp):
CAAAAATCTCAAAATCC
Done.