Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 236 of 378
Found at i:69940011 original size:12 final size:13
Alignment explanation
Indices: 69939992--69940024 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
69939982 GGGTTCAGCT
69939992 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
69940005 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
69940017 ATGGAGAA
1 ATGGAGAA
69940025 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:69946257 original size:11 final size:10
Alignment explanation
Indices: 69946231--69946269 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
69946221 TGCTTTTGTA
*
69946231 CATGATGTGC
1 CATGATATGC
69946241 CATGATATGC
1 CATGATATGC
69946251 ACATGATATGC
1 -CATGATATGC
69946262 CATGATAT
1 CATGATAT
69946270 ATTCACATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 17 0.63
11 10 0.37
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:69946277 original size:23 final size:21
Alignment explanation
Indices: 69946230--69946269 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
69946220 CTGCTTTTGT
*
69946230 ACATGATGTGCCATGATATGC
1 ACATGATATGCCATGATATGC
69946251 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
69946270 ATTCACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:69946350 original size:25 final size:25
Alignment explanation
Indices: 69946316--69946385 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
69946306 AGGAAGTGCT
*
69946316 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
69946341 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
69946366 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69946386 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:69946398 original size:24 final size:24
Alignment explanation
Indices: 69946315--69946403 Score: 117
Period size: 25 Copynumber: 3.6 Consensus size: 24
69946305 GAGGAAGTGC
69946315 TAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
69946339 CGAAAAGGGCTTTGCCCCAGTTTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
*
69946364 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
*
69946388 TAAAAGAGGCTATGCC
1 TAAAAG-GGCTTTGCC
69946404 TCCAATTATA
Statistics
Matches: 59, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
23 5 0.08
24 12 0.20
25 42 0.71
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:69948704 original size:27 final size:27
Alignment explanation
Indices: 69948673--69949131 Score: 351
Period size: 27 Copynumber: 17.0 Consensus size: 27
69948663 AATGCCCTCA
*
69948673 ATTTGTAAAATTACTAAAATACCCCTG
1 ATTTGTAAAATTACCAAAATACCCCTG
*
69948700 GTTTGTAAAATTACCAAAATACCCCT-
1 ATTTGTAAAATTACCAAAATACCCCTG
*
69948726 AGTTTGTGAAATTACCAAAATACCCCTG
1 A-TTTGTAAAATTACCAAAATACCCCTG
* * *
69948754 ATTTGTGAAATTACTAAAATACCCTTG
1 ATTTGTAAAATTACCAAAATACCCCTG
*
69948781 ACTTGTAAAATTACCAAAATACCCCTG
1 ATTTGTAAAATTACCAAAATACCCCTG
* **
69948808 ATTTGTGAAATTACTGAAATA-CCCTCG
1 ATTTGTAAAATTACCAAAATACCCCT-G
* *
69948835 ACTTGTAAAATTACCAAAATACCCTTG
1 ATTTGTAAAATTACCAAAATACCCCTG
* ** *
69948862 GTTTCCAAAATTACCAAAATA-CCCTT
1 ATTTGTAAAATTACCAAAATACCCCTG
* *
69948888 AGTTTGTAAAATTACCAAAATACCCATA
1 A-TTTGTAAAATTACCAAAATACCCCTG
* *** *
69948916 ATTTGTGAAATTATTGAAATA-CCCTC
1 ATTTGTAAAATTACCAAAATACCCCTG
* *** *
69948942 AGTTTGCAAAATTATTGAAATACCCTTG
1 A-TTTGTAAAATTACCAAAATACCCCTG
*
69948970 ATTTGTAAAATTACTAAAATA-CCCTCG
1 ATTTGTAAAATTACCAAAATACCCCT-G
* *
69948997 ACTTGTAAAAATTACCAAAGTACCCC-G
1 ATTTGT-AAAATTACCAAAATACCCCTG
* ***
69949024 ATTTATAAAATTACCATTTTA-CCCTCG
1 ATTTGTAAAATTACCAAAATACCCCT-G
** **
69949051 ATTTACAAAATTATTAAAATACCCCTG
1 ATTTGTAAAATTACCAAAATACCCCTG
** * *
69949078 -TAGGGTAGAATTACCGAAATACCCCTG
1 AT-TTGTAAAATTACCAAAATACCCCTG
** * *
69949105 -TAGGGTAGAATTACTAAAATACCCCTG
1 AT-TTGTAAAATTACCAAAATACCCCTG
69949132 TAGGGTAGAA
Statistics
Matches: 349, Mismatches: 68, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
25 3 0.01
26 27 0.08
27 287 0.82
28 29 0.08
29 3 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
ATTTGTAAAATTACCAAAATACCCCTG
Found at i:69948738 original size:54 final size:53
Alignment explanation
Indices: 69948656--69949037 Score: 397
Period size: 54 Copynumber: 7.1 Consensus size: 53
69948646 GTTTACCAAC
* * * *
69948656 TTACTAAAATGCCCTCAATTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAA
1 TTACTAAAATACCCT-AGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAA
* * *
69948710 TTACCAAAATACCCCTAGTTTGTGAAATTACCAAAATACCCCTGATTTGTGAAA
1 TTACTAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAA
* * *
69948764 TTACTAAAATACCCTTGACTTGTAAAATTACCAAAATACCCCTGATTTGTGAAA
1 TTACTAAAATACCCTAG-TTTGTAAAATTACCAAAATACCCCTGATTTGTAAAA
* * * * * **
69948818 TTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCTTGGTTTCCAAAA
1 TTACTAAAATACCCTAG-TTTGTAAAATTACCAAAATACCCCTGATTTGTAAAA
* * * *
69948872 TTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCATAATTTGTGAAA
1 TTACTAAAATACCC-TAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAA
* * * *** *
69948926 TTATTGAAATACCCTCAGTTTGCAAAATTATTGAAATACCCTTGATTTGTAAAA
1 TTACTAAAATACCCT-AGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAA
* * * *
69948980 TTACTAAAATACCCTCGACTTGTAAAAATTACCAAAGTACCCC-GATTTATAAAA
1 TTACTAAAATACCCTAG-TTTGT-AAAATTACCAAAATACCCCTGATTTGTAAAA
69949034 TTAC
1 TTAC
69949038 CATTTTACCC
Statistics
Matches: 273, Mismatches: 49, Indels: 12
0.82 0.15 0.04
Matches are distributed among these distances:
53 7 0.03
54 246 0.90
55 20 0.07
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (53 bp):
TTACTAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAA
Found at i:69949132 original size:27 final size:27
Alignment explanation
Indices: 69949059--69949151 Score: 150
Period size: 27 Copynumber: 3.4 Consensus size: 27
69949049 CGATTTACAA
*
69949059 AATTATTAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
**
69949086 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
69949113 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
*
69949140 AATTACTGAAAT
1 AATTACTAAAAT
69949152 TTTCTTTTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACTAAAATACCCCTGTAGGGTAG
Found at i:69949335 original size:27 final size:27
Alignment explanation
Indices: 69949300--69949369 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
69949290 TTCAAATCCT
* *
69949300 TGTAAGGTAGAATTATTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
* *
69949327 TGTAGGGTAGAATTACTGAGATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCC
* *
69949354 TGTGGGGTAAAATTAC
1 TGTAGGGTAGAATTAC
69949370 CATTTTGCCC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCC
Found at i:69949609 original size:25 final size:25
Alignment explanation
Indices: 69949575--69949644 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
69949565 AGGAAGTGCT
*
69949575 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
69949600 AAAAGGGCTTTGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
69949625 AAAAGGGATTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69949645 ACTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:69952376 original size:43 final size:42
Alignment explanation
Indices: 69952308--69952403 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 42
69952298 TTTAGGACGT
* *
69952308 TGGCATCGTATTTGATTTCGTGTAAGAACC-TGTCTGGGACAG
1 TGGCATCGTATTTGATTTCATGTAAG-ACCATGTCTGGAACAG
*
69952350 TGGCATCGATATTTG-TTTACATGTAAGACCATGTCTGGAACAT
1 TGGCATCG-TATTTGATTT-CATGTAAGACCATGTCTGGAACAG
*
69952393 TGGCATTGTAT
1 TGGCATCGTAT
69952404 GAGCTTTCCG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
42 17 0.36
43 30 0.64
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (42 bp):
TGGCATCGTATTTGATTTCATGTAAGACCATGTCTGGAACAG
Found at i:69956076 original size:27 final size:26
Alignment explanation
Indices: 69956045--69956139 Score: 84
Period size: 27 Copynumber: 3.5 Consensus size: 26
69956035 TTAGTTTACC
* *
69956045 AAATTACTGAAATACCTTCGACTTGTA
1 AAATTACTCAAATACC-TCGATTTGTA
* *
69956072 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TA-CCTCGATTTGTA
*
69956099 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATA-CCTCGATTTGTA
* *
69956126 AAATCACTGAAATA
1 AAATTACTCAAATA
69956140 AGATAGAATT
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
26 3 0.05
27 46 0.84
28 6 0.11
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (26 bp):
AAATTACTCAAATACCTCGATTTGTA
Found at i:69956185 original size:27 final size:27
Alignment explanation
Indices: 69956155--69956339 Score: 264
Period size: 27 Copynumber: 6.9 Consensus size: 27
69956145 GAATTACCAA
69956155 TTTACCCTCGATTTACAGAATTACTGT
1 TTTACCCTCGATTTACAGAATTACTGT
* * *
69956182 TTTACCCTCAATTTATAGAATTACTAT
1 TTTACCCTCGATTTACAGAATTACTGT
*
69956209 TTTACCCTCGATTTACAGAATTACCGT
1 TTTACCCTCGATTTACAGAATTACTGT
* *
69956236 TTTACCCTCGATTTATAGAATTA-TCAT
1 TTTACCCTCGATTTACAGAATTACT-GT
* *
69956263 TTTACCCTCGATTTATAGAATTACCGT
1 TTTACCCTCGATTTACAGAATTACTGT
69956290 TTTACCCTCGATTTACAGAATTACTGT
1 TTTACCCTCGATTTACAGAATTACTGT
* *
69956317 TTTATCCTCGATTTACAAAATTA
1 TTTACCCTCGATTTACAGAATTA
69956340 TTGAAATACC
Statistics
Matches: 140, Mismatches: 16, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
TTTACCCTCGATTTACAGAATTACTGT
Found at i:69956351 original size:54 final size:54
Alignment explanation
Indices: 69956142--69956339 Score: 299
Period size: 54 Copynumber: 3.7 Consensus size: 54
69956132 CTGAAATAAG
* * * *
69956142 ATAGAATTACCAATTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
69956196 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
*
69956250 ATAGAATTA-TCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACT-ATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
* * * *
69956304 ACAGAATTACTGTTTTATCCTCGATTTACAAAATTA
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTA
69956340 TTGAAATACC
Statistics
Matches: 132, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
53 1 0.01
54 130 0.98
55 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (54 bp):
ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
Found at i:69956366 original size:81 final size:81
Alignment explanation
Indices: 69956144--69956368 Score: 206
Period size: 81 Copynumber: 2.8 Consensus size: 81
69956134 GAAATAAGAT
** * * ** * * *
69956144 AGAATTACCAATTTACCCTCGATTTACAGAATTA-CTGTTTTACCCTCA-ATTTATAGAATTACT
1 AGAATTACCGTTTTACCCTCGATTTACAAAATTATC-ATAATACCCT-AGATTTACAAAATTACC
*
69956207 ATTTTACCCTCGATTTAC
64 GTTTTACCCTCGATTTAC
* * ** * * *
69956225 AGAATTACCGTTTTACCCTCGATTTATAGAATTATCATTTTACCCTCGATTTATAGAATTACCGT
1 AGAATTACCGTTTTACCCTCGATTTACAAAATTATCATAATACCCTAGATTTACAAAATTACCGT
69956290 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* * *
69956306 AGAATTACTGTTTTATCCTCGATTTACAAAATTATTGA-AATACCCTTAG-TTTACAAAATTACC
1 AGAATTACCGTTTTACCCTCGATTTACAAAATTA-TCATAATACCC-TAGATTTACAAAATTACC
69956369 AAAATACCCT
Statistics
Matches: 123, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
81 118 0.96
82 5 0.04
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (81 bp):
AGAATTACCGTTTTACCCTCGATTTACAAAATTATCATAATACCCTAGATTTACAAAATTACCGT
TTTACCCTCGATTTAC
Found at i:69956415 original size:27 final size:27
Alignment explanation
Indices: 69956360--69956541 Score: 163
Period size: 27 Copynumber: 6.8 Consensus size: 27
69956350 CTTAGTTTAC
**
69956360 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* * *
69956387 AAAATTACCATAATGCCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*** * *
69956414 AAAATTGTTAAATTACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
69956441 AAAATTACTAAAATACCCCTGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
69956468 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
69956495 GAAATTATCAAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* * *
69956522 ATAA-TATCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
69956542 TAGGGTAGAA
Statistics
Matches: 127, Mismatches: 25, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
26 13 0.10
27 110 0.87
28 4 0.03
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:69956418 original size:81 final size:81
Alignment explanation
Indices: 69956333--69956502 Score: 193
Period size: 81 Copynumber: 2.1 Consensus size: 81
69956323 CTCGATTTAC
*
69956333 AAAATTATTGAAA-TACCCTTAGTTTACAAAATTACCAAAATA-CCCTCGA-TCAGTAAAATTAC
1 AAAATTATT-AAATTACCCCTAGTTTACAAAATTACCAAAATACCCCT-GACT-AGTAAAATTAC
* * *
69956395 CATAATGCCCCTGGTTTGT
63 CAAAATACCCCTGATTTGT
* * ** * *
69956414 AAAATTGTTAAATTACCCCTGGTTTGTAAAATTACTAAAATACCCCTGACTTGTAAAATTACCAA
1 AAAATTATTAAATTACCCCTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
69956479 AATACCCCTGATTTGT
66 AATACCCCTGATTTGT
*
69956495 GAAATTAT
1 AAAATTAT
69956503 CAAAATACTC
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
80 3 0.04
81 66 0.89
82 5 0.07
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
AAAATTATTAAATTACCCCTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
AATACCCCTGATTTGT
Found at i:69956570 original size:27 final size:27
Alignment explanation
Indices: 69956529--69956779 Score: 387
Period size: 27 Copynumber: 9.3 Consensus size: 27
69956519 TGTATAATAT
69956529 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
69956556 TGGAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
69956583 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
69956610 CGAAATACCCCTATAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
69956637 CGCAATA-CCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
69956663 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
69956690 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
69956717 CGAAATACCAATGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
69956744 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
69956771 CGAGATACC
1 CGAAATACC
69956780 TTGTGAGGTA
Statistics
Matches: 201, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 22 0.11
27 179 0.89
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:69956581 original size:107 final size:107
Alignment explanation
Indices: 69956526--69956779 Score: 359
Period size: 107 Copynumber: 2.4 Consensus size: 107
69956516 ATTTGTATAA
*
69956526 TATCGAAATACCCCTGTAGGGTAGAATTACTGGAATACCCCTGTAGGGTAGAATTACCGAAATAC
1 TATCGAAATA-CCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATAC
* *
69956591 CCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAT
65 CCCTGTAGGGTAGAATTACCAAAATACCCCGATAGGGTAGAAT
*
69956634 TATCGCAATACCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACC
1 TATCGAAATACCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACC
* * * **
69956699 CTTGTAGGGTAGAAATACCGAAATACCAATG-TAGGGTAGAAT
66 CCTGTAGGGTAGAATTACCAAAATACC-CCGATAGGGTAGAAT
* *
69956741 TA-CTGAAATACCCCTGTAGGGTAGAATTACCGAGATACC
1 TATC-GAAATA-CCCTGTAGGGTAGAATTACTGAAATACC
69956780 TTGTGAGGTA
Statistics
Matches: 133, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
106 1 0.01
107 97 0.73
108 35 0.26
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (107 bp):
TATCGAAATACCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACC
CCTGTAGGGTAGAATTACCAAAATACCCCGATAGGGTAGAAT
Found at i:69956779 original size:134 final size:134
Alignment explanation
Indices: 69956530--69956796 Score: 403
Period size: 134 Copynumber: 2.0 Consensus size: 134
69956520 GTATAATATC
* * * **
69956530 GAAATACCCCTGTAGGGTAGAATTACTGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCAAT
* *
69956595 GTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGCAATACCCTGT-AGGGTAGAA
66 GTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCGCAATACCCTGTGA-GGTAAAA
69956659 TTACT
130 TTACT
*
69956664 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCAAT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCAAT
* * *
69956729 GTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCG-AGATACCTTGTGAGGTAAAA
66 GTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCGCA-ATACCCTGTGAGGTAAAA
69956793 TTAC
130 TTAC
69956797 CATTTTGCCC
Statistics
Matches: 120, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
133 1 0.01
134 118 0.98
135 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.24
Consensus pattern (134 bp):
GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCAAT
GTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCGCAATACCCTGTGAGGTAAAAT
TACT
Found at i:69957230 original size:6 final size:6
Alignment explanation
Indices: 69957199--69957286 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
69957189 TTGCATTCAC
* *
69957199 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
69957247 ATCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
69957287 AATGTTTCTT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
5 5 0.07
6 53 0.79
7 6 0.09
8 3 0.04
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:69957237 original size:31 final size:31
Alignment explanation
Indices: 69957199--69957278 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
69957189 TTGCATTCAC
* * * *
69957199 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTATCACCTAATACTG
*
69957230 ATTCTGATTCTGATTCTATCACCTAATTCTG
1 ATTCTGATTCTGATTCTATCACCTAATACTG
69957261 ATTCTGATTCTGATTCTA
1 ATTCTGATTCTGATTCTA
69957279 GTTCTGATAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATCACCTAATACTG
Found at i:69960841 original size:20 final size:20
Alignment explanation
Indices: 69960816--69960875 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
69960806 GATTCGAGAT
* *
69960816 AGTCTGAAAGCAGCTTTCGA
1 AGTCTGAAAGCAGCTTCCAA
69960836 AGTCTGAAAGCAGCTTCCAA
1 AGTCTGAAAGCAGCTTCCAA
**
69960856 AGTCTGAAAATAGCTTCCAA
1 AGTCTGAAAGCAGCTTCCAA
69960876 TCGTTAGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (20 bp):
AGTCTGAAAGCAGCTTCCAA
Found at i:69965010 original size:21 final size:21
Alignment explanation
Indices: 69964985--69965024 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
69964975 TGAAATTATA
* *
69964985 AGTTTATTGAAGTTTGATGAT
1 AGTTTATGGAAGCTTGATGAT
69965006 AGTTTATGGAAGCTTGATG
1 AGTTTATGGAAGCTTGATG
69965025 TTGGGTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.28, T:0.42
Consensus pattern (21 bp):
AGTTTATGGAAGCTTGATGAT
Found at i:69966187 original size:10 final size:10
Alignment explanation
Indices: 69966172--69966217 Score: 65
Period size: 10 Copynumber: 4.6 Consensus size: 10
69966162 AGCTCTGGGG
*
69966172 TCGTCAGGGA
1 TCGTCAAGGA
69966182 TCGTCAAGGA
1 TCGTCAAGGA
*
69966192 TCGTCAGGGA
1 TCGTCAAGGA
*
69966202 TCATCAAGGA
1 TCGTCAAGGA
69966212 TCGTCA
1 TCGTCA
69966218 CCACACACTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (10 bp):
TCGTCAAGGA
Found at i:69966197 original size:20 final size:20
Alignment explanation
Indices: 69966172--69966217 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
69966162 AGCTCTGGGG
*
69966172 TCGTCAGGGATCGTCAAGGA
1 TCGTCAGGGATCATCAAGGA
69966192 TCGTCAGGGATCATCAAGGA
1 TCGTCAGGGATCATCAAGGA
69966212 TCGTCA
1 TCGTCA
69966218 CCACACACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (20 bp):
TCGTCAGGGATCATCAAGGA
Found at i:69968193 original size:46 final size:46
Alignment explanation
Indices: 69968143--69968318 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
69968133 TGGTTGAGCA
69968143 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69968189 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
69968234 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69968282 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69968319 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69968299 original size:93 final size:93
Alignment explanation
Indices: 69968140--69968311 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69968130 GGATGGTTGA
* *
69968140 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69968205 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
69968233 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69968298 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69968312 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69975773 original size:46 final size:46
Alignment explanation
Indices: 69975723--69975898 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
69975713 TGGTTGAGCA
69975723 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69975769 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
69975814 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69975862 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69975899 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69975879 original size:93 final size:93
Alignment explanation
Indices: 69975720--69975891 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69975710 GGATGGTTGA
* *
69975720 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69975785 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
69975813 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69975878 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69975892 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69978890 original size:22 final size:22
Alignment explanation
Indices: 69978865--69978908 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
69978855 ATGATCTTGG
* *
69978865 ATATTTGTAATGTCTTGTAAAT
1 ATATATGTAATGGCTTGTAAAT
**
69978887 ATATATGTTTTGGCTTGTAAAT
1 ATATATGTAATGGCTTGTAAAT
69978909 CTAGCCATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.50
Consensus pattern (22 bp):
ATATATGTAATGGCTTGTAAAT
Found at i:69986788 original size:40 final size:40
Alignment explanation
Indices: 69986759--69986872 Score: 138
Period size: 40 Copynumber: 2.9 Consensus size: 40
69986749 ATAACCATGT
* ** *
69986759 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * * *
69986799 GCACGAATGCCTTCGGGTCTTAGCCCGAATGTAGCAACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
69986839 GCACAATTGCCTTCGGGTCTTAACCCGGATATAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
69986873 TTTCCAGCAT
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:69990267 original size:12 final size:13
Alignment explanation
Indices: 69990239--69990271 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
69990229 TTATTTCTTT
69990239 TTCTCCATCTACC
1 TTCTCCATCTACC
*
69990252 TTCTCC-TCTTCC
1 TTCTCCATCTACC
69990264 TTCTCCAT
1 TTCTCCAT
69990272 AGCTGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:69991383 original size:28 final size:28
Alignment explanation
Indices: 69991340--69991432 Score: 152
Period size: 28 Copynumber: 3.3 Consensus size: 28
69991330 ATGTACTAGA
*
69991340 ATACCCCTATGCATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
69991368 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
69991396 ATACCCCTATGTATGCAAAATAACC-TCT
1 ATACCCCTATGTATGCAAAATTACCAT-T
69991424 ATACCCCTA
1 ATACCCCTA
69991433 GGGTTAATTT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 1 0.02
28 61 0.98
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:69991608 original size:27 final size:28
Alignment explanation
Indices: 69991537--69991616 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 28
69991527 AGGAAGCGTC
69991537 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGG-TACTGCCACAAATTATCTGTT
* ** * *
69991565 CTGGTCGCCCTGGCACATA-TATCTGTT
1 CTGGTGGTACTGCCACAAATTATCTGTT
*
69991592 CTGGTGGTACTGCCACAAAATATCT
1 CTGGTGGTACTGCCACAAATTATCT
69991617 ATATCTAGTG
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (28 bp):
CTGGTGGTACTGCCACAAATTATCTGTT
Found at i:69993041 original size:40 final size:39
Alignment explanation
Indices: 69992997--69993154 Score: 128
Period size: 41 Copynumber: 3.9 Consensus size: 39
69992987 CGATTCTTAA
*
69992997 CACTGGCTC-AAAGCCCTTTGAGACCAAGCTCGGATTAGG
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTA-G
* * *
69993036 CCACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-TTATG
1 -CACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTA-G
* * * *
69993076 ACACTGGCTCAAAAGCCCTTCGAAACTAAGTTCAGTTATTAG
1 -CACTGGCTCAAAAGCCCTTCGAGACCAAGCTC-G-GATTAG
69993118 CACTGGCTCAAAAGCCCTTCGA-ACCCAAGCTCGGATT
1 CACTGGCTCAAAAGCCCTTCGAGA-CCAAGCTCGGATT
69993155 TACACCCCGA
Statistics
Matches: 97, Mismatches: 12, Indels: 19
0.76 0.09 0.15
Matches are distributed among these distances:
39 3 0.03
40 43 0.44
41 47 0.48
42 1 0.01
43 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (39 bp):
CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAG
Found at i:69993134 original size:41 final size:40
Alignment explanation
Indices: 69993037--69993140 Score: 145
Period size: 40 Copynumber: 2.6 Consensus size: 40
69993027 CGGATTAGGC
* * * *
69993037 CACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTATGA
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTCCAGTTATGA
* *
69993077 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCAGTTATTA
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTCCAGTTATGA
69993117 GCACTGGCTCAAAAGCCCTTCGAA
1 -CACTGGCTCAAAAGCCCTTCGAA
69993141 CCCAAGCTCG
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 34 0.60
41 23 0.40
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTCCAGTTATGA
Found at i:69997907 original size:40 final size:40
Alignment explanation
Indices: 69997863--69997952 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
69997853 GTGCTAAGTG
* * * *
69997863 ACTAAATCCGGACTAAGATCCGACGGCATACGTGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATACGAGCAAGCT
* *
69997903 ACTAAATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCT
1 ACTAAATCCGGACTAAGATCCGAAGGCATACGAGCAAGCT
69997943 ACTAAATCCG
1 ACTAAATCCG
69997953 AGTTGAGTCC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (40 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATACGAGCAAGCT
Found at i:69998006 original size:80 final size:80
Alignment explanation
Indices: 69997828--69998015 Score: 199
Period size: 80 Copynumber: 2.3 Consensus size: 80
69997818 TTCGAATGAT
* *
69997828 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
69997893 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* * *
69997908 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCC-GAGT-TGAGTCCCGAAG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGA-T-CCGAAG
* *
69997968 GCATTCGTGCGAGTTACTGTA
61 GCATACGTGCGAGTTACT-AA
*
69997989 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
69998016 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 9, Indels: 16
0.78 0.08 0.14
Matches are distributed among these distances:
78 2 0.02
79 5 0.05
80 74 0.81
81 10 0.11
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:69998093 original size:14 final size:14
Alignment explanation
Indices: 69998074--69998104 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
69998064 GAATGAACCT
69998074 GCTGTAAAATTTCA
1 GCTGTAAAATTTCA
69998088 GCTGTAAAATTTCA
1 GCTGTAAAATTTCA
69998102 GCT
1 GCT
69998105 AATACGCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (14 bp):
GCTGTAAAATTTCA
Found at i:69998387 original size:8 final size:8
Alignment explanation
Indices: 69998374--69998399 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
69998364 TGCTTACTCC
69998374 GTTTCTCT
1 GTTTCTCT
69998382 GTTTCTCT
1 GTTTCTCT
69998390 GTTTCTCT
1 GTTTCTCT
69998398 GT
1 GT
69998400 CTATAGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.23, G:0.15, T:0.62
Consensus pattern (8 bp):
GTTTCTCT
Found at i:70001778 original size:37 final size:37
Alignment explanation
Indices: 70001728--70001813 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
70001718 TTATTACGAA
*
70001728 GTCTTACCCGGACATAATCTCTACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
70001765 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
70001802 GTCTTACCCGGA
1 GTCTTACCCGGA
70001814 ATATATTTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:70001929 original size:48 final size:48
Alignment explanation
Indices: 70001858--70002127 Score: 513
Period size: 48 Copynumber: 5.6 Consensus size: 48
70001848 TGTTACAACA
* *
70001858 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
70001906 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
70001954 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
70002002 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
70002050 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
70002098 TTCACATTAGCCATTCGGCTTTACCACATA
1 TTCACATTAGCCATTCGGCTTTACCACATA
70002128 ATTACACTTT
Statistics
Matches: 218, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 218 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
Found at i:70003654 original size:13 final size:13
Alignment explanation
Indices: 70003636--70003660 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70003626 CACTAAATTT
70003636 TCATGGATTCAAA
1 TCATGGATTCAAA
70003649 TCATGGATTCAA
1 TCATGGATTCAA
70003661 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:70010142 original size:40 final size:40
Alignment explanation
Indices: 70010063--70010220 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
70010053 TTCGAATGAT
* * * *
70010063 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
70010103 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
70010143 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
70010183 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
70010221 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:70010241 original size:80 final size:80
Alignment explanation
Indices: 70010063--70010250 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
70010053 TTCGAATGAT
* *
70010063 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
70010128 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
70010143 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
70010204 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
70010224 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
70010251 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:70010608 original size:8 final size:8
Alignment explanation
Indices: 70010595--70010620 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
70010585 TGCTTACTCC
70010595 GTTTCTCT
1 GTTTCTCT
70010603 GTTTCTCT
1 GTTTCTCT
70010611 GTTTCTCT
1 GTTTCTCT
70010619 GT
1 GT
70010621 CTATAGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.23, G:0.15, T:0.62
Consensus pattern (8 bp):
GTTTCTCT
Found at i:70017126 original size:40 final size:39
Alignment explanation
Indices: 70017082--70017239 Score: 137
Period size: 41 Copynumber: 3.9 Consensus size: 39
70017072 CGATTCTTAA
70017082 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGGATTAGG
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTA-G
* * *
70017121 CCACTGGCTCGAAGGCCCTTC-AGAACTAAG-TCCGG-TTATG
1 -CACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTA-G
* * *
70017161 ACACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 -CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGG--ATTAG
*
70017203 CACTGGCTAAAAAGCCCTTCGA-ACCCAAGCTCGGATT
1 CACTGGCTCAAAAGCCCTTCGAGA-CCAAGCTCGGATT
70017240 TACACCCCGA
Statistics
Matches: 99, Mismatches: 10, Indels: 19
0.77 0.08 0.15
Matches are distributed among these distances:
39 3 0.03
40 44 0.44
41 48 0.48
42 1 0.01
43 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (39 bp):
CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAG
Found at i:70017219 original size:41 final size:41
Alignment explanation
Indices: 70017082--70017225 Score: 154
Period size: 40 Copynumber: 3.6 Consensus size: 41
70017072 CGATTCTTAA
* * *
70017082 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGG--ATTAGG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G
* * * *
70017121 CCACTGGCTCGAAGGCCCTTC-AGAACTAAGTCCGGTTATGA-
1 -CACTGGCTCAAAAGCCCTTCGA-AACTAAGTTCGGTTATTAG
70017162 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
*
70017203 CACTGGCTAAAAAGCCCTTCGAA
1 CACTGGCTCAAAAGCCCTTCGAA
70017226 CCCAAGCTCG
Statistics
Matches: 87, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
40 44 0.51
41 40 0.46
43 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
Found at i:70020496 original size:35 final size:35
Alignment explanation
Indices: 70020450--70020524 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
70020440 AGATTTTTCT
*
70020450 GAAGATTATTCTTAATATGTAATGTTACCATTAAG
1 GAAGATTATTCTTAATATGTAATGATACCATTAAG
*
70020485 GAAGATTATTCTTAATATGTAATGATACCGTTAAG
1 GAAGATTATTCTTAATATGTAATGATACCATTAAG
70020520 GAAGA
1 GAAGA
70020525 AATTATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.36
Consensus pattern (35 bp):
GAAGATTATTCTTAATATGTAATGATACCATTAAG
Found at i:70023503 original size:31 final size:31
Alignment explanation
Indices: 70023466--70023527 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
70023456 AGTCCTGAAA
70023466 GAAAAATTATTTTAATACTATTTTATGATTT
1 GAAAAATTATTTTAATACTATTTTATGATTT
70023497 GAAAAATTATTTTAATACTATTTTATGATTT
1 GAAAAATTATTTTAATACTATTTTATGATTT
70023528 ACAGTATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (31 bp):
GAAAAATTATTTTAATACTATTTTATGATTT
Found at i:70023544 original size:31 final size:31
Alignment explanation
Indices: 70023478--70023544 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
70023468 AAAATTATTT
* **
70023478 TAATACTATTTTATGATTTGAAAAATTATTT
1 TAATACTATTTTATGATTTGAAAAATGATAA
**
70023509 TAATACTATTTTATGATTT-ACAGTATGATAA
1 TAATACTATTTTATGATTTGA-AAAATGATAA
70023540 TAATA
1 TAATA
70023545 TTGTGTGAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
30 1 0.03
31 29 0.97
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.48
Consensus pattern (31 bp):
TAATACTATTTTATGATTTGAAAAATGATAA
Found at i:70025833 original size:39 final size:39
Alignment explanation
Indices: 70025769--70026264 Score: 674
Period size: 39 Copynumber: 12.7 Consensus size: 39
70025759 TTCCAACACA
*
70025769 AATGCCTTCTGGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
70025808 AATACCTTTGGGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
70025847 AATACCTTCGGGACTTAGCCCGGATATAACACCAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* ** * *
70025886 AATACCTTCGGGACTTAGCCCAAATATAACACCAGTATG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
70025925 AATGCCTTCAGGACTTAGCTCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
70025964 AATGCCTTCGGGACTTAGCCCGGACATAACACCAGAACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
70026003 AATGCCTTCGGGACTTAACCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* * * *
70026042 AATGCCTTCGGGACTTATCCCGGACATAACACTAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* * *
70026081 AATGCCTTCGGCACTTAGCCCGGATATAACACTAGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
70026120 AATGCCTTCGGGACTTATCCCGGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
70026159 AATACCTTCGGGACTTAGCCCGGATATAGCACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
70026198 AATGCCTTCAGGACTTAGCCCGGATATAA-ATCTCA-CAC-
1 AATGCCTTCGGGACTTAGCCCGGATATAACA-C-CAGCACG
* * * *
70026236 AAGGCCTGCGGGTCTTAGCCCGGTTATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
70026265 TCCTCAATTA
Statistics
Matches: 406, Mismatches: 49, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
38 25 0.06
39 379 0.93
40 2 0.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
Found at i:70029118 original size:12 final size:12
Alignment explanation
Indices: 70029101--70029125 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70029091 TTTGAAGTTT
70029101 TGTAACTCGAGA
1 TGTAACTCGAGA
70029113 TGTAACTCGAGA
1 TGTAACTCGAGA
70029125 T
1 T
70029126 ATGAATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (12 bp):
TGTAACTCGAGA
Found at i:70032321 original size:27 final size:27
Alignment explanation
Indices: 70032271--70032322 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
70032261 TTTTATATTA
*
70032271 ATTAATAATGGTTATATATGTAAAATG
1 ATTAATAATGGTTATATATATAAAATG
70032298 ATTAATAAT-GTTATATAATATAAAA
1 ATTAATAATGGTTATAT-ATATAAAA
70032323 CATAAAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (27 bp):
ATTAATAATGGTTATATATATAAAATG
Found at i:70033227 original size:43 final size:42
Alignment explanation
Indices: 70033164--70033334 Score: 188
Period size: 43 Copynumber: 4.0 Consensus size: 42
70033154 CATAGGATTT
* *
70033164 TCGATATGTGTTCTCATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGAT-TCGTGTAAGACCACGTCTGGGACGTTGGCA
* * * *
70033207 TCGATATGTGATTACGTGTAAGACCAAGTTTGGGACATTTGCA
1 TCGATATGTGATT-CGTGTAAGACCACGTCTGGGACGTTGGCA
*
70033250 TCG-TAT-TAGATTCGTGTAAGACC-CTGTCTAGGACAG-TGGCA
1 TCGATATGT-GATTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCA
*
70033291 TCGATATGTGATTGCATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGATT-CGTGTAAGACCACGTCTGGGACGTTGGCA
70033334 T
1 T
70033335 TGTACGATAT
Statistics
Matches: 106, Mismatches: 13, Indels: 18
0.77 0.09 0.13
Matches are distributed among these distances:
41 26 0.25
42 16 0.15
43 63 0.59
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
TCGATATGTGATTCGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:70039621 original size:4 final size:4
Alignment explanation
Indices: 70039612--70039642 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
70039602 CTTTATTGCT
70039612 TTAG TTAG TTAG TTAG TTAG TTAG TTAG TTA
1 TTAG TTAG TTAG TTAG TTAG TTAG TTAG TTA
70039643 TAAGTCGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.52
Consensus pattern (4 bp):
TTAG
Found at i:70057638 original size:28 final size:29
Alignment explanation
Indices: 70057607--70057666 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
70057597 GATTTTTAAC
*
70057607 AAAAATGTCAATT-AGGGATTAAATTGAG
1 AAAAATGTAAATTGAGGGATTAAATTGAG
* * *
70057635 AAAAGTGTAAATTGAGGGGTTAAATTGTG
1 AAAAATGTAAATTGAGGGATTAAATTGAG
70057664 AAA
1 AAA
70057667 TAAATGGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.45, C:0.02, G:0.25, T:0.28
Consensus pattern (29 bp):
AAAAATGTAAATTGAGGGATTAAATTGAG
Found at i:70058238 original size:43 final size:43
Alignment explanation
Indices: 70058145--70058311 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 43
70058135 GGTTATCGAG
*** *
70058145 ATGTGATTACATGTAAGACCATGTCTGGGACATCAACATTGTA
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA
* * *
70058188 TTGTGATTACGTGTAAGACCATGTCTGGGATATTGGCATCGTTA
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TA
* * * *
70058232 AT-TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-A
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA
* * * *
70058273 TATGTGATAACATGTAAGACTATATCTGGGATA-TGGCAT
1 -ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
70058312 TGTACAAGCT
Statistics
Matches: 102, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 8 0.08
43 90 0.88
44 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA
Found at i:70062103 original size:22 final size:22
Alignment explanation
Indices: 70062075--70062131 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
70062065 GTTTAAGCCT
70062075 CACACGCCCGTGTGGAGCAATG
1 CACACGCCCGTGTGGAGCAATG
*
70062097 CACACGCCCATGTGGAGCAATG
1 CACACGCCCGTGTGGAGCAATG
*
70062119 CACACGCCTGTGT
1 CACACGCCCGTGT
70062132 CCCTTACCCG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.16
Consensus pattern (22 bp):
CACACGCCCGTGTGGAGCAATG
Found at i:70070381 original size:89 final size:89
Alignment explanation
Indices: 70070271--70070474 Score: 222
Period size: 90 Copynumber: 2.3 Consensus size: 89
70070261 TTTTATCAAA
* * * *
70070271 TCACCGACATT-TAGCCTGCTAGGTTTAAAAAAAACCTGAAT-TCA-TTCACTGGCATT-T-CAC
1 TCACCGGCATTATAGCCTGCTAGG-CT--AAAAAACCCGAATGT-ATTTCACCGGCATTATAC-C
70070331 CTGCTAGGCTCAAA-GCCCGAATAGTATC
61 CTGCTAGGCTCAAAGGCCCGAATAGTATC
* ** *
70070359 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAGTGGTATTTCACCGGCATTATACCCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTAAAAAACCCGAAT-GTATTTCACCGGCATTATACCCTGC
70070424 TAGGCTCAAAGGCCCGAATAGTATC
65 TAGGCTCAAAGGCCCGAATAGTATC
* *
70070449 TCATCGGCATTATAGCCAGCTAGGCT
1 TCACCGGCATTATAGCCTGCTAGGCT
70070475 CAAAGGCCCG
Statistics
Matches: 99, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
86 8 0.08
87 1 0.01
88 23 0.23
89 28 0.28
90 39 0.39
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (89 bp):
TCACCGGCATTATAGCCTGCTAGGCTAAAAAACCCGAATGTATTTCACCGGCATTATACCCTGCT
AGGCTCAAAGGCCCGAATAGTATC
Found at i:70070409 original size:45 final size:45
Alignment explanation
Indices: 70070330--70070488 Score: 257
Period size: 45 Copynumber: 3.6 Consensus size: 45
70070320 TGGCATTTCA
70070330 CCTGCTAGGCTCAAA-GCCCGAATAGTATCTCACCGGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAG
* * * *
70070374 CCTGCTAGGCTCAAAGGCCCGAGTGGTATTTCACCGGCATTATAC
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAG
*
70070419 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCATCGGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAG
*
70070464 CCAGCTAGGCTCAAAGGCCCGAATA
1 CCTGCTAGGCTCAAAGGCCCGAATA
70070489 ATACTGTGCG
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
44 15 0.14
45 89 0.86
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (45 bp):
CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAG
Found at i:70077621 original size:45 final size:45
Alignment explanation
Indices: 70077565--70077655 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
70077555 GAATTATATG
* * *
70077565 ATCTGAACTCATTGAGTTGTGGTCTGAGTTTATGATATATGTGAC
1 ATCTGAACTCATTCAATTGTGGTCTGAGTTCATGATATATGTGAC
* *
70077610 ATCTGAGCTCATTCAATTGTGGTCTGAGTTCATGATGTATGTGAC
1 ATCTGAACTCATTCAATTGTGGTCTGAGTTCATGATATATGTGAC
70077655 A
1 A
70077656 CATGTTCAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTCAATTGTGGTCTGAGTTCATGATATATGTGAC
Found at i:70081625 original size:32 final size:32
Alignment explanation
Indices: 70081589--70081654 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
70081579 AATTAAAAGA
70081589 ATTAAAAAGGGAAATAAGCCAAATTAGCTATC
1 ATTAAAAAGGGAAATAAGCCAAATTAGCTATC
*
70081621 ATTAAAAAGGTAAATAAGCCAAATTAGCTATC
1 ATTAAAAAGGGAAATAAGCCAAATTAGCTATC
70081653 AT
1 AT
70081655 CTTCTTCATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.50, C:0.12, G:0.14, T:0.24
Consensus pattern (32 bp):
ATTAAAAAGGGAAATAAGCCAAATTAGCTATC
Found at i:70091022 original size:40 final size:39
Alignment explanation
Indices: 70090978--70091103 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
70090968 GGGACTCAAC
*
70090978 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
70091018 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
70091058 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
70091098 CCGGAT
1 CCGGAT
70091104 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:70091062 original size:80 final size:80
Alignment explanation
Indices: 70090917--70091103 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
70090907 GCTACACATT
* * *
70090917 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
70090981 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
70090997 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
70091060 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
70091078 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
70091104 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:70093609 original size:19 final size:19
Alignment explanation
Indices: 70093585--70093622 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
70093575 TGGGCCACGT
70093585 TGGGCCGAAAT-GGCTCGTG
1 TGGGCC-AAATGGGCTCGTG
*
70093604 TGGGCCCAATGGGCTCGTG
1 TGGGCCAAATGGGCTCGTG
70093623 GGTCCCACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.13, C:0.24, G:0.42, T:0.21
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCGTG
Found at i:70093891 original size:27 final size:27
Alignment explanation
Indices: 70093857--70094056 Score: 226
Period size: 27 Copynumber: 7.4 Consensus size: 27
70093847 CCTCAAAATA
* *
70093857 GGTAAAATGACTGTAATACCCCTATAG
1 GGTAAAATGACTGTAATGCCCCTGTAG
* *
70093884 GGTAAAATGA-TCGTAATGTCCCTATAG
1 GGTAAAATGACT-GTAATGCCCCTGTAG
*
70093911 GGTAAAATAACTGTAATGCCCCTGTAG
1 GGTAAAATGACTGTAATGCCCCTGTAG
* *
70093938 GGTAAAATGACCGTAATGCCCCTTTAG
1 GGTAAAATGACTGTAATGCCCCTGTAG
* *
70093965 GTTAAAATGACCGTAATAG-CCCTGTAG
1 GGTAAAATGACTGTAAT-GCCCCTGTAG
* *
70093992 GATAAAATG-GTCGTAATGCCCCTGTAG
1 GGTAAAATGACT-GTAATGCCCCTGTAG
* * *
70094019 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACTGTAATGCCCCTGTAG
70094046 GGTAAAATGAC
1 GGTAAAATGAC
70094057 GATTATGCCC
Statistics
Matches: 149, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.01
27 145 0.97
28 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACTGTAATGCCCCTGTAG
Found at i:70093918 original size:54 final size:54
Alignment explanation
Indices: 70093857--70094055 Score: 272
Period size: 54 Copynumber: 3.7 Consensus size: 54
70093847 CCTCAAAATA
* * *
70093857 GGTAAAATGACTGTAATACCCCTATAGGGTAAAATGATCGTAATGTCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGTAATGCCCCTATAG
* * * * *
70093911 GGTAAAATAACTGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTTTAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGTAATGCCCCTATAG
* * * * *
70093965 GTTAAAATGACCGTAATAGCCCTGTAGGATAAAATGGTCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGTAATGCCCCTATAG
*
70094019 GGTAAAATGACCGTAATACCCCTGTATGGTAAAATGA
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGA
70094056 CGATTATGCC
Statistics
Matches: 125, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 125 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (54 bp):
GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGTAATGCCCCTATAG
Found at i:70093998 original size:81 final size:80
Alignment explanation
Indices: 70093857--70094056 Score: 260
Period size: 81 Copynumber: 2.5 Consensus size: 80
70093847 CCTCAAAATA
* * *
70093857 GGTAAAATGACTGTAATACCCCTATAGGGTAAAATGATCGTAATGTCCCTATAGGGTAAAATAAC
1 GGTAAAATGACCGTAATACCCCTATA-GGTAAAATGACCGTAATGTCCCTATAGGATAAAAT-AC
70093922 T-GTAATGCCCCTGTAG
64 TCGTAATGCCCCTGTAG
* * * **
70093938 GGTAAAATGACCGTAATGCCCCTTTAGGTTAAAATGACCGTAATAG-CCCTGTAGGATAAAATGG
1 GGTAAAATGACCGTAATACCCCTATAGG-TAAAATGACCGTAAT-GTCCCTATAGGATAAAATAC
70094002 TCGTAATGCCCCTGTAG
64 TCGTAATGCCCCTGTAG
*
70094019 GGTAAAATGACCGTAATACCCCTGTATGGTAAAATGAC
1 GGTAAAATGACCGTAATACCCCTATA-GGTAAAATGAC
70094057 GATTATGCCC
Statistics
Matches: 105, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
80 3 0.03
81 99 0.94
82 3 0.03
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (80 bp):
GGTAAAATGACCGTAATACCCCTATAGGTAAAATGACCGTAATGTCCCTATAGGATAAAATACTC
GTAATGCCCCTGTAG
Found at i:70097529 original size:40 final size:39
Alignment explanation
Indices: 70097484--70097691 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
70097474 CGGAATACAA
*
70097484 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
70097524 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
70097564 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
70097604 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
70097644 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
70097684 CCGGATAT
1 CCGGATAT
70097692 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:70097624 original size:80 final size:80
Alignment explanation
Indices: 70097484--70097690 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
70097474 CGGAATACAA
* * *
70097484 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
70097548 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
70097564 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
70097628 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
70097644 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
70097691 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:70100482 original size:32 final size:32
Alignment explanation
Indices: 70100446--70100549 Score: 100
Period size: 32 Copynumber: 3.0 Consensus size: 32
70100436 CCTTTTCATA
70100446 TTTCATATTGCATAACACTAGGCCAAAGCCTTTTTCAT
1 TTTCATATTGCATAACACTAGGCCAAAGCC----T--T
* *
70100484 ATTTCATATTGCATAACACTGGGCCGAAGCCTT
1 -TTTCATATTGCATAACACTAGGCCAAAGCCTT
* **
70100517 TTTCATATTTCATATTACTAGGCCAAAGCCTT
1 TTTCATATTGCATAACACTAGGCCAAAGCCTT
70100549 T
1 T
70100550 ACTGTAAACG
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
32 28 0.48
33 1 0.02
35 1 0.02
39 28 0.48
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (32 bp):
TTTCATATTGCATAACACTAGGCCAAAGCCTT
Found at i:70100490 original size:39 final size:39
Alignment explanation
Indices: 70100428--70100532 Score: 185
Period size: 39 Copynumber: 2.7 Consensus size: 39
70100418 ACATATACTG
70100428 GGCCAAAGCC-TTTTCATATTTCATATTGCATAACACTA
1 GGCCAAAGCCTTTTTCATATTTCATATTGCATAACACTA
*
70100466 GGCCAAAGCCTTTTTCATATTTCATATTGCATAACACTG
1 GGCCAAAGCCTTTTTCATATTTCATATTGCATAACACTA
*
70100505 GGCCGAAGCCTTTTTCATATTTCATATT
1 GGCCAAAGCCTTTTTCATATTTCATATT
70100533 ACTAGGCCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
38 10 0.16
39 54 0.84
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (39 bp):
GGCCAAAGCCTTTTTCATATTTCATATTGCATAACACTA
Found at i:70102224 original size:40 final size:40
Alignment explanation
Indices: 70102147--70102330 Score: 318
Period size: 40 Copynumber: 4.6 Consensus size: 40
70102137 AAACCAAGTA
* *
70102147 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
70102186 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70102226 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70102266 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70102306 CCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG
70102331 CAACACCAAT
Statistics
Matches: 139, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 14 0.10
40 125 0.90
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70104956 original size:40 final size:40
Alignment explanation
Indices: 70104879--70105062 Score: 318
Period size: 40 Copynumber: 4.6 Consensus size: 40
70104869 AAACCAAGTA
* *
70104879 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
70104918 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70104958 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70104998 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70105038 CCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG
70105063 CAACACCAAT
Statistics
Matches: 139, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 14 0.10
40 125 0.90
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70107674 original size:40 final size:40
Alignment explanation
Indices: 70107597--70107814 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
70107587 AAACCAAGTA
* *
70107597 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
70107636 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70107676 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70107716 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
70107756 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
70107796 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70107815 TTATCATCCG
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 15 0.09
40 153 0.91
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70109730 original size:11 final size:11
Alignment explanation
Indices: 70109714--70109791 Score: 78
Period size: 11 Copynumber: 7.6 Consensus size: 11
70109704 TTATGAATAC
70109714 ATCATATGCAT
1 ATCATATGCAT
70109725 ATCATA--CAT
1 ATCATATGCAT
*
70109734 ATCATGTGCAT
1 ATCATATGCAT
*
70109745 ATCGTA--CAT
1 ATCATATGCAT
*
70109754 ATCATGTGCAT
1 ATCATATGCAT
70109765 ATCATA--CAT
1 ATCATATGCAT
*
70109774 ATCATGTGCAT
1 ATCATATGCAT
70109785 ATCATAT
1 ATCATAT
70109792 CAATATTGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 23 0.43
11 30 0.57
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:70109736 original size:9 final size:9
Alignment explanation
Indices: 70109722--70109778 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
70109712 ACATCATATG
70109722 CATATCATA
1 CATATCATA
*
70109731 CATATCATGTG
1 CATATCA--TA
*
70109742 CATATCGTA
1 CATATCATA
*
70109751 CATATCATGTG
1 CATATCA--TA
70109762 CATATCATA
1 CATATCATA
70109771 CATATCAT
1 CATATCAT
70109779 GTGCATATCA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:70109743 original size:20 final size:20
Alignment explanation
Indices: 70109714--70109790 Score: 136
Period size: 20 Copynumber: 3.9 Consensus size: 20
70109704 TTATGAATAC
*
70109714 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
70109734 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
70109754 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
70109774 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
70109791 TCAATATTGT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:70113159 original size:40 final size:40
Alignment explanation
Indices: 70113034--70113177 Score: 136
Period size: 40 Copynumber: 3.6 Consensus size: 40
70113024 TCGAATGATG
* * *
70113034 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTAAA
* * *
70113074 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
* *
70113114 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AA
*
70113155 -CCGGGCTATGTCCCGAAGG-ATTT
1 TCCGGGCTAAGTCCCGAAGGCATTT
70113178 CAAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
39 5 0.06
40 71 0.82
41 11 0.13
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAA
Found at i:70121168 original size:40 final size:40
Alignment explanation
Indices: 70121043--70121183 Score: 137
Period size: 40 Copynumber: 3.5 Consensus size: 40
70121033 CCGAATGATG
* * *
70121043 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTAAA
* * *
70121083 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
* *
70121123 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AA
*
70121164 -CCGGGCTATGTCCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
70121184 TTTCGAGCGA
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
39 1 0.01
40 72 0.86
41 11 0.13
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAA
Found at i:70121624 original size:42 final size:43
Alignment explanation
Indices: 70121578--70121668 Score: 116
Period size: 43 Copynumber: 2.1 Consensus size: 43
70121568 TTTAGGACGT
*
70121578 TGGCATC-ATATTTGATTT-CATGTAAGAACC-TGTCTGGGACAG
1 TGGCATCGATATTTG-TTTACATGTAAG-ACCATGTCTGGAACAG
* *
70121620 TGGCATCGATATTTGTTTACTTGTAAGACCATGTCTGGAACAT
1 TGGCATCGATATTTGTTTACATGTAAGACCATGTCTGGAACAG
70121663 TGGCAT
1 TGGCAT
70121669 TGTATGAGCT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
42 13 0.30
43 30 0.70
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (43 bp):
TGGCATCGATATTTGTTTACATGTAAGACCATGTCTGGAACAG
Found at i:70125347 original size:27 final size:26
Alignment explanation
Indices: 70125316--70125410 Score: 84
Period size: 27 Copynumber: 3.5 Consensus size: 26
70125306 TTAGTTTACC
* *
70125316 AAATTACTGAAATACCTTCGACTTGTA
1 AAATTACTCAAATACC-TCGATTTGTA
* *
70125343 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TA-CCTCGATTTGTA
*
70125370 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATA-CCTCGATTTGTA
* *
70125397 AAATCACTGAAATA
1 AAATTACTCAAATA
70125411 AGATAGAATT
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
26 3 0.05
27 46 0.84
28 6 0.11
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (26 bp):
AAATTACTCAAATACCTCGATTTGTA
Found at i:70125455 original size:27 final size:27
Alignment explanation
Indices: 70125415--70125610 Score: 243
Period size: 27 Copynumber: 7.3 Consensus size: 27
70125405 GAAATAAGAT
**
70125415 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACTGTTTTACCCTCGATTTAC
* *
70125442 AGAATTACTGTTTTACCCTCAATTTAT
1 AGAATTACTGTTTTACCCTCGATTTAC
*
70125469 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACTGTTTTACCCTCGATTTAC
*
70125496 AGAATTA-TCGTTTTACCCTCGATTTAT
1 AGAATTACT-GTTTTACCCTCGATTTAC
* *
70125523 AGAATTA-TCATTTTACCCTCGATTTAT
1 AGAATTACT-GTTTTACCCTCGATTTAC
*
70125550 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACTGTTTTACCCTCGATTTAC
* * *
70125577 AAAATTACTGTTTTATCCTCGAATTAC
1 AGAATTACTGTTTTACCCTCGATTTAC
*
70125604 AAAATTA
1 AGAATTA
70125611 TTGAAATACC
Statistics
Matches: 150, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (27 bp):
AGAATTACTGTTTTACCCTCGATTTAC
Found at i:70125476 original size:54 final size:54
Alignment explanation
Indices: 70125413--70125610 Score: 272
Period size: 54 Copynumber: 3.7 Consensus size: 54
70125403 CTGAAATAAG
*
70125413 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTT
*
70125467 ATAGAATTACTATTTTACCCTCGATTTACAGAATTA-TCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTT
* * *
70125521 ATAGAATTATCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTT
* * ** * * *
70125575 ACAAAATTACTGTTTTATCCTCGAATTACAAAATTA
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTA
70125611 TTGAAATACC
Statistics
Matches: 127, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 126 0.99
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTT
Found at i:70125644 original size:27 final size:26
Alignment explanation
Indices: 70125599--70125675 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 26
70125589 TTATCCTCGA
***
70125599 ATTACAAAATTATTGAAATACCCTTAG
1 ATTACAAAATTACCAAAATACCC-TAG
* *
70125626 TTTACAAAATTACCAAAATACCCTCG
1 ATTACAAAATTACCAAAATACCCTAG
* *
70125652 ATCAGTAAAATTACCAAAATACCC
1 ATTA-CAAAATTACCAAAATACCC
70125676 CTGGTTTGTA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 4 0.10
27 37 0.90
ACGTcount: A:0.45, C:0.22, G:0.05, T:0.27
Consensus pattern (26 bp):
ATTACAAAATTACCAAAATACCCTAG
Found at i:70125686 original size:27 final size:27
Alignment explanation
Indices: 70125631--70125812 Score: 181
Period size: 27 Copynumber: 6.8 Consensus size: 27
70125621 CTTAGTTTAC
**
70125631 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
70125658 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*** * *
70125685 AAAATTGTTAAATTACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
70125712 AAAATTACTAAAATACCCCTGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
70125739 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
70125766 GAAATTATCAAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* * *
70125793 ATAA-TATCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
70125813 TAGGGTAGAA
Statistics
Matches: 131, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
26 13 0.10
27 114 0.87
28 4 0.03
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:70125689 original size:81 final size:81
Alignment explanation
Indices: 70125604--70125773 Score: 211
Period size: 81 Copynumber: 2.1 Consensus size: 81
70125594 CTCGAATTAC
*
70125604 AAAATTATTGAAA-TACCCTTAGTTTACAAAATTACCAAAATA-CCCTCGA-TCAGTAAAATTAC
1 AAAATTATT-AAATTACCCCTAGTTTACAAAATTACCAAAATACCCCT-GACT-AGTAAAATTAC
*
70125666 CAAAATACCCCTGGTTTGT
63 CAAAATACCCCTGATTTGT
* * ** * *
70125685 AAAATTGTTAAATTACCCCTGGTTTGTAAAATTACTAAAATACCCCTGACTTGTAAAATTACCAA
1 AAAATTATTAAATTACCCCTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
70125750 AATACCCCTGATTTGT
66 AATACCCCTGATTTGT
*
70125766 GAAATTAT
1 AAAATTAT
70125774 CAAAATACTC
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
80 3 0.04
81 68 0.89
82 5 0.07
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (81 bp):
AAAATTATTAAATTACCCCTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
AATACCCCTGATTTGT
Found at i:70125841 original size:27 final size:27
Alignment explanation
Indices: 70125800--70126076 Score: 423
Period size: 27 Copynumber: 10.3 Consensus size: 27
70125790 TGTATAATAT
70125800 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
70125827 CGGAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
70125854 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
70125881 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
70125908 CGAAATACCCCTATAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
70125935 CGCAATA-CCCTGTAGGGTAGAATTA-
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
70125960 CTAAATATCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
70125987 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
70126014 CGAAATACCCATGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
70126041 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
70126068 CGAGATACC
1 CGAAATACC
70126077 TTGTGAGGTA
Statistics
Matches: 226, Mismatches: 22, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
25 5 0.02
26 35 0.15
27 186 0.82
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:70126076 original size:133 final size:133
Alignment explanation
Indices: 70125803--70126069 Score: 417
Period size: 133 Copynumber: 2.0 Consensus size: 133
70125793 ATAATATCGA
* *
70125803 AATACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGT
1 AATA-CCCTGTAGGGTAGAATTA-CGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
* * *
70125868 AGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATT
64 AGGGTAGAAATACCGAAATACCCATGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATT
*
70125933 ATCGC
129 ACCGC
* * *
70125938 AATACCCTGTAGGGTAGAATTACTAAATATCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAG
1 AATACCCTGTAGGGTAGAATTACGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAG
* *
70126003 GGTAGAAATACCGAAATACCCATGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTAC
66 GGTAGAAATACCGAAATACCCATGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATTAC
70126068 CG
131 CG
70126070 AGATACCTTG
Statistics
Matches: 121, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
133 99 0.82
134 18 0.15
135 4 0.03
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (133 bp):
AATACCCTGTAGGGTAGAATTACGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAG
GGTAGAAATACCGAAATACCCATGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATTAC
CGC
Found at i:70126527 original size:6 final size:6
Alignment explanation
Indices: 70126496--70126583 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
70126486 TTGCATTCAC
* *
70126496 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
70126544 ATCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
70126584 AATGTTTCTT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
5 5 0.07
6 53 0.79
7 6 0.09
8 3 0.04
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:70126534 original size:31 final size:31
Alignment explanation
Indices: 70126496--70126575 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
70126486 TTGCATTCAC
* * * *
70126496 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTATCACCTAATACTG
*
70126527 ATTCTGATTCTGATTCTATCACCTAATTCTG
1 ATTCTGATTCTGATTCTATCACCTAATACTG
70126558 ATTCTGATTCTGATTCTA
1 ATTCTGATTCTGATTCTA
70126576 GTTCTGATAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATCACCTAATACTG
Found at i:70129096 original size:10 final size:10
Alignment explanation
Indices: 70129081--70129126 Score: 74
Period size: 10 Copynumber: 4.6 Consensus size: 10
70129071 AGCTCTGGGG
*
70129081 TCGTCAGGGA
1 TCGTCAAGGA
70129091 TCGTCAAGGA
1 TCGTCAAGGA
*
70129101 TCGTCAGGGA
1 TCGTCAAGGA
70129111 TCGTCAAGGA
1 TCGTCAAGGA
70129121 TCGTCA
1 TCGTCA
70129127 CCACACTATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.24, C:0.22, G:0.33, T:0.22
Consensus pattern (10 bp):
TCGTCAAGGA
Found at i:70129106 original size:20 final size:20
Alignment explanation
Indices: 70129081--70129126 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
70129071 AGCTCTGGGG
70129081 TCGTCAGGGATCGTCAAGGA
1 TCGTCAGGGATCGTCAAGGA
70129101 TCGTCAGGGATCGTCAAGGA
1 TCGTCAGGGATCGTCAAGGA
70129121 TCGTCA
1 TCGTCA
70129127 CCACACTATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.22, G:0.33, T:0.22
Consensus pattern (20 bp):
TCGTCAGGGATCGTCAAGGA
Found at i:70131426 original size:22 final size:22
Alignment explanation
Indices: 70131401--70131444 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
70131391 ATGATCTTGG
* *
70131401 ATATTTGTAATGTCTTGTAAAT
1 ATATATGTAATGGCTTGTAAAT
**
70131423 ATATATGTTTTGGCTTGTAAAT
1 ATATATGTAATGGCTTGTAAAT
70131445 CTAGCCATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.50
Consensus pattern (22 bp):
ATATATGTAATGGCTTGTAAAT
Found at i:70133423 original size:8 final size:8
Alignment explanation
Indices: 70133406--70133444 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
70133396 ACAACCCACA
70133406 TTTCAGCT
1 TTTCAGCT
*
70133414 TTTCACCT
1 TTTCAGCT
70133422 TTTCAGCT
1 TTTCAGCT
*
70133430 TTTCGGCT
1 TTTCAGCT
70133438 TTTCAGC
1 TTTCAGC
70133445 CTTTGTCGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.10, C:0.28, G:0.13, T:0.49
Consensus pattern (8 bp):
TTTCAGCT
Found at i:70140362 original size:45 final size:45
Alignment explanation
Indices: 70140306--70140396 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
70140296 GAATTATATG
* * *
70140306 ATCTGAACTCATTGAGTTGTGGTCTGAGTTTATGATATATGTGAC
1 ATCTGAACTCATTCAATTGTGGTCTGAGTTCATGATATATGTGAC
* *
70140351 ATCTGAGCTCATTCAATTGTGGTCTGAGTTCATGATGTATGTGAC
1 ATCTGAACTCATTCAATTGTGGTCTGAGTTCATGATATATGTGAC
70140396 A
1 A
70140397 CATGTTCAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTCAATTGTGGTCTGAGTTCATGATATATGTGAC
Found at i:70144390 original size:32 final size:32
Alignment explanation
Indices: 70144354--70144419 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
70144344 AATTAAAAGA
70144354 ATTAAAAAGGGAAATAAGCCAAATTAGCTATC
1 ATTAAAAAGGGAAATAAGCCAAATTAGCTATC
*
70144386 ATTAAAAAGGTAAATAAGCCAAATTAGCTATC
1 ATTAAAAAGGGAAATAAGCCAAATTAGCTATC
70144418 AT
1 AT
70144420 CTTCTTCATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.50, C:0.12, G:0.14, T:0.24
Consensus pattern (32 bp):
ATTAAAAAGGGAAATAAGCCAAATTAGCTATC
Found at i:70149434 original size:19 final size:19
Alignment explanation
Indices: 70149410--70149447 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
70149400 TGGGCCACGT
70149410 TGGGCCAAAATGGG-TCGTG
1 TGGGCC-AAATGGGCTCGTG
*
70149429 TGGGCCCAATGGGCTCGTG
1 TGGGCCAAATGGGCTCGTG
70149448 GGTCCCACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.16, C:0.21, G:0.42, T:0.21
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCGTG
Found at i:70149716 original size:27 final size:27
Alignment explanation
Indices: 70149682--70149881 Score: 235
Period size: 27 Copynumber: 7.4 Consensus size: 27
70149672 CCTCAAAATA
* *
70149682 GGTAAAATGACTGTAATACCCCTATAG
1 GGTAAAATGACTGTAATGCCCCTGTAG
* *
70149709 GGTAAAATGA-TCGTAATGTCCCTATAG
1 GGTAAAATGACT-GTAATGCCCCTGTAG
*
70149736 GGTAAAATAACTGTAATGCCCCTGTAG
1 GGTAAAATGACTGTAATGCCCCTGTAG
* *
70149763 GGTAAAATGACCGTAATGCCCCTTTAG
1 GGTAAAATGACTGTAATGCCCCTGTAG
*
70149790 GGTAAAATGACCGTAATAG-CCCTGTAG
1 GGTAAAATGACTGTAAT-GCCCCTGTAG
* *
70149817 GATAAAATG-GTCGTAATGCCCCTGTAG
1 GGTAAAATGACT-GTAATGCCCCTGTAG
* * *
70149844 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACTGTAATGCCCCTGTAG
70149871 GGTAAAATGAC
1 GGTAAAATGAC
70149882 GATTATGCCC
Statistics
Matches: 150, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.01
27 146 0.97
28 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACTGTAATGCCCCTGTAG
Found at i:70149741 original size:54 final size:54
Alignment explanation
Indices: 70149682--70149880 Score: 281
Period size: 54 Copynumber: 3.7 Consensus size: 54
70149672 CCTCAAAATA
* * *
70149682 GGTAAAATGACTGTAATACCCCTATAGGGTAAAATGATCGTAATGTCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGTAATGCCCCTATAG
* * * * *
70149736 GGTAAAATAACTGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTTTAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGTAATGCCCCTATAG
* * * *
70149790 GGTAAAATGACCGTAATAGCCCTGTAGGATAAAATGGTCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGTAATGCCCCTATAG
*
70149844 GGTAAAATGACCGTAATACCCCTGTATGGTAAAATGA
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGA
70149881 CGATTATGCC
Statistics
Matches: 127, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 127 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26
Consensus pattern (54 bp):
GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGTAATGCCCCTATAG
Found at i:70149823 original size:81 final size:81
Alignment explanation
Indices: 70149682--70149881 Score: 278
Period size: 81 Copynumber: 2.5 Consensus size: 81
70149672 CCTCAAAATA
* * *
70149682 GGTAAAATGACTGTAATACCCCTATAGGGTAAAATGATCGTAATGTCCCTATAGGGTAAAATAAC
1 GGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGTAATGTCCCTATAGGATAAAAT-AC
70149747 T-GTAATGCCCCTGTAG
65 TCGTAATGCCCCTGTAG
* * * **
70149763 GGTAAAATGACCGTAATGCCCCTTTAGGGTAAAATGACCGTAATAG-CCCTGTAGGATAAAATGG
1 GGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGTAAT-GTCCCTATAGGATAAAATAC
70149827 TCGTAATGCCCCTGTAG
65 TCGTAATGCCCCTGTAG
* *
70149844 GGTAAAATGACCGTAATACCCCTGTATGGTAAAATGAC
1 GGTAAAATGACCGTAATACCCCTATAGGGTAAAATGAC
70149882 GATTATGCCC
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 1 0.01
81 104 0.98
82 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26
Consensus pattern (81 bp):
GGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGTAATGTCCCTATAGGATAAAATACT
CGTAATGCCCCTGTAG
Found at i:70150051 original size:27 final size:27
Alignment explanation
Indices: 70150021--70150082 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
70150011 AGGAAGTACT
* *
70150021 TTACTGGTGACTATGTCACATTCACTG
1 TTACTGGCGACTATGCCACATTCACTG
* * *
70150048 TTACTGCCGACTTTGCCACATTTACTG
1 TTACTGGCGACTATGCCACATTCACTG
*
70150075 TTTCTGGC
1 TTACTGGC
70150083 AGCTTTGCTG
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.39
Consensus pattern (27 bp):
TTACTGGCGACTATGCCACATTCACTG
Found at i:70150660 original size:15 final size:16
Alignment explanation
Indices: 70150628--70150660 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
70150618 CGGTTTTCTA
70150628 AATAACACAAGATTTC
1 AATAACACAAGATTTC
*
70150644 AATAACA-AAGTTTTC
1 AATAACACAAGATTTC
70150659 AA
1 AA
70150661 AATGCTTTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.52, C:0.15, G:0.06, T:0.27
Consensus pattern (16 bp):
AATAACACAAGATTTC
Found at i:70153067 original size:32 final size:32
Alignment explanation
Indices: 70153031--70153134 Score: 91
Period size: 39 Copynumber: 3.0 Consensus size: 32
70153021 CCTTTTCATA
70153031 TTTCATATTGCATAACACTAGGCCGAAGCCTT
1 TTTCATATTGCATAACACTAGGCCGAAGCCTT
* *
70153063 TTTCATATTTCATACTGCATAACACTGGGCTGAAGCCTT
1 TTTC--A--T-AT--TGCATAACACTAGGCCGAAGCCTT
* ** *
70153102 TTTCATATTTCATATTACTAGGCCAAAGCCTT
1 TTTCATATTGCATAACACTAGGCCGAAGCCTT
70153134 T
1 T
70153135 ACTGTAAACG
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
32 23 0.40
34 3 0.05
35 1 0.02
36 1 0.02
37 3 0.05
39 26 0.46
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (32 bp):
TTTCATATTGCATAACACTAGGCCGAAGCCTT
Found at i:70153071 original size:39 final size:39
Alignment explanation
Indices: 70153013--70153117 Score: 167
Period size: 39 Copynumber: 2.7 Consensus size: 39
70153003 ACATATACTG
*
70153013 GGCCAAAGCC-TTTTCATATTTCATATTGCATAACACTA
1 GGCCGAAGCCTTTTTCATATTTCATATTGCATAACACTA
* *
70153051 GGCCGAAGCCTTTTTCATATTTCATACTGCATAACACTG
1 GGCCGAAGCCTTTTTCATATTTCATATTGCATAACACTA
*
70153090 GGCTGAAGCCTTTTTCATATTTCATATT
1 GGCCGAAGCCTTTTTCATATTTCATATT
70153118 ACTAGGCCAA
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
38 9 0.15
39 52 0.85
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (39 bp):
GGCCGAAGCCTTTTTCATATTTCATATTGCATAACACTA
Found at i:70154809 original size:40 final size:40
Alignment explanation
Indices: 70154732--70154949 Score: 309
Period size: 40 Copynumber: 5.5 Consensus size: 40
70154722 AAACCAAGTA
* *
70154732 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
70154771 CCTTCGGGACTTAGCCCTGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70154811 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70154851 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
70154891 CCTTCAGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTC-GGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
70154931 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70154950 TTATCATCCG
Statistics
Matches: 162, Mismatches: 12, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
39 18 0.11
40 141 0.87
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70158088 original size:40 final size:40
Alignment explanation
Indices: 70157975--70158190 Score: 334
Period size: 39 Copynumber: 5.5 Consensus size: 40
70157965 AAACCAAGTA
* *
70157975 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
70158014 CCTTCGGGACTTAG-CCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70158053 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70158093 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
70158133 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
70158172 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70158191 TTATCATCCG
Statistics
Matches: 167, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
38 2 0.01
39 83 0.50
40 82 0.49
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70158105 original size:79 final size:79
Alignment explanation
Indices: 70157975--70158194 Score: 340
Period size: 79 Copynumber: 2.8 Consensus size: 79
70157965 AAACCAAGTA
* *
70157975 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAG-CCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
70158038 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
70158053 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
70158118 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
70158133 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
70158195 CATCCGAATA
Statistics
Matches: 132, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
78 15 0.11
79 85 0.64
80 32 0.24
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
AACTCGCACAAATG
Found at i:70160107 original size:11 final size:11
Alignment explanation
Indices: 70160091--70160168 Score: 78
Period size: 11 Copynumber: 7.6 Consensus size: 11
70160081 TTATGAATAC
70160091 ATCATATGCAT
1 ATCATATGCAT
70160102 ATCATA--CAT
1 ATCATATGCAT
*
70160111 ATCATGTGCAT
1 ATCATATGCAT
*
70160122 ATCGTA--CAT
1 ATCATATGCAT
*
70160131 ATCATGTGCAT
1 ATCATATGCAT
70160142 ATCATA--CAT
1 ATCATATGCAT
*
70160151 ATCATGTGCAT
1 ATCATATGCAT
70160162 ATCATAT
1 ATCATAT
70160169 CAATATTGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 23 0.43
11 30 0.57
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:70160113 original size:9 final size:9
Alignment explanation
Indices: 70160099--70160155 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
70160089 ACATCATATG
70160099 CATATCATA
1 CATATCATA
*
70160108 CATATCATGTG
1 CATATCA--TA
*
70160119 CATATCGTA
1 CATATCATA
*
70160128 CATATCATGTG
1 CATATCA--TA
70160139 CATATCATA
1 CATATCATA
70160148 CATATCAT
1 CATATCAT
70160156 GTGCATATCA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:70160120 original size:20 final size:20
Alignment explanation
Indices: 70160091--70160167 Score: 136
Period size: 20 Copynumber: 3.9 Consensus size: 20
70160081 TTATGAATAC
*
70160091 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
70160111 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
70160131 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
70160151 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
70160168 TCAATATTGT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:70166450 original size:27 final size:27
Alignment explanation
Indices: 70166392--70166637 Score: 237
Period size: 27 Copynumber: 9.2 Consensus size: 27
70166382 ACCCGAAATA
*
70166392 GGTAAAATGACTGTAATA-CCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
70166418 GCTAAAATGACCGTAATACCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
70166445 GGTAAAATGACCGTAAT-GCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
70166471 GGTAAAATGACCGTATTGCCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * ***
70166498 GGTAAAATGACCGTATTGCTGTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
70166525 GATAAAATGATCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
70166552 GATAAAATGACCGTAATA-CCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
70166578 GATAAAATGACCATAATGCCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * * * *
70166605 GGTAAAACGATCGGAATACCCTTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
70166632 GGTAAA
1 GGTAAA
70166638 TGATGATTAT
Statistics
Matches: 186, Mismatches: 31, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
26 61 0.33
27 125 0.67
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:70166604 original size:107 final size:107
Alignment explanation
Indices: 70166413--70166611 Score: 290
Period size: 107 Copynumber: 1.9 Consensus size: 107
70166403 TGTAATACCC
* * * * * *
70166413 TGTAGGCTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGTAATGCCTTGTAGGGTAAAA
1 TGTAGGATAAAATGACCGTAATACCCCTATAGGATAAAATGACCGTAATACCCTATAGGATAAAA
* * *
70166478 TGACCGTATTGCCCTTGTAGGGTAAAATGACCGTATTGCTGT
66 TGACCATAATGCCCCTGTAGGGTAAAATGACCGTATTGCTGT
* * *
70166520 TGTAGGATAAAATGATCGTAATGCCCCTGTAGGATAAAATGACCGTAATACCCTATAGGATAAAA
1 TGTAGGATAAAATGACCGTAATACCCCTATAGGATAAAATGACCGTAATACCCTATAGGATAAAA
70166585 TGACCATAATGCCCCTGTAGGGTAAAA
66 TGACCATAATGCCCCTGTAGGGTAAAA
70166612 CGATCGGAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
107 80 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26
Consensus pattern (107 bp):
TGTAGGATAAAATGACCGTAATACCCCTATAGGATAAAATGACCGTAATACCCTATAGGATAAAA
TGACCATAATGCCCCTGTAGGGTAAAATGACCGTATTGCTGT
Found at i:70166630 original size:107 final size:107
Alignment explanation
Indices: 70166392--70166630 Score: 273
Period size: 107 Copynumber: 2.2 Consensus size: 107
70166382 ACCCGAAATA
* * * * *
70166392 GGTAAAATGACTGTAATACCC-TGTAGGCTAAAATGACCGTAATACCCCTATAGGGTAAAATGAC
1 GGTAAAACGACCGGAATACCCTTGTAGGATAAAATGACCGTAATACCCCTATAGGATAAAATGAC
* * * * * * *
70166456 CGTAATGCCTTGTAGGGTAAAATGACCGTATTGCCCTTGTAG
66 CGTAATACCCTATAGGATAAAATGACCATAATGCCCCTGTAG
* * * * ** * * *
70166498 GGTAAAATGACCGTATTGCTGTTGTAGGATAAAATGATCGTAATGCCCCTGTAGGATAAAATGAC
1 GGTAAAACGACCGGAATACCCTTGTAGGATAAAATGACCGTAATACCCCTATAGGATAAAATGAC
70166563 CGTAATACCCTATAGGATAAAATGACCATAATGCCCCTGTAG
66 CGTAATACCCTATAGGATAAAATGACCATAATGCCCCTGTAG
*
70166605 GGTAAAACGATCGGAATACCCTTGTA
1 GGTAAAACGACCGGAATACCCTTGTA
70166631 TGGTAAATGA
Statistics
Matches: 108, Mismatches: 24, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
106 16 0.15
107 92 0.85
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26
Consensus pattern (107 bp):
GGTAAAACGACCGGAATACCCTTGTAGGATAAAATGACCGTAATACCCCTATAGGATAAAATGAC
CGTAATACCCTATAGGATAAAATGACCATAATGCCCCTGTAG
Found at i:70166640 original size:53 final size:54
Alignment explanation
Indices: 70166392--70166630 Score: 286
Period size: 53 Copynumber: 4.5 Consensus size: 54
70166382 ACCCGAAATA
* * * *
70166392 GGTAAAATGACTGTAATACCC-TGTAGGCTAAAATGACCGTAATACCCCTATAG
1 GGTAAAATGACCGTAATACCCTTGTAGGATAAAATGACCGTAATGCCCCTGTAG
* * * *
70166445 GGTAAAATGACCGTAAT-GCCTTGTAGGGTAAAATGACCGTATTGCCCTTGTAG
1 GGTAAAATGACCGTAATACCCTTGTAGGATAAAATGACCGTAATGCCCCTGTAG
* * ** *
70166498 GGTAAAATGACCGTATTGCTGTTGTAGGATAAAATGATCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATACCCTTGTAGGATAAAATGACCGTAATGCCCCTGTAG
* * *
70166552 GATAAAATGACCGTAATACCC-TATAGGATAAAATGACCATAATGCCCCTGTAG
1 GGTAAAATGACCGTAATACCCTTGTAGGATAAAATGACCGTAATGCCCCTGTAG
* * *
70166605 GGTAAAACGATCGGAATACCCTTGTA
1 GGTAAAATGACCGTAATACCCTTGTA
70166631 TGGTAAATGA
Statistics
Matches: 155, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
52 2 0.01
53 105 0.68
54 48 0.31
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26
Consensus pattern (54 bp):
GGTAAAATGACCGTAATACCCTTGTAGGATAAAATGACCGTAATGCCCCTGTAG
Found at i:70167045 original size:32 final size:32
Alignment explanation
Indices: 70167000--70167085 Score: 154
Period size: 32 Copynumber: 2.7 Consensus size: 32
70166990 CTGCTACTGT
**
70167000 ATAGGGCTAAGGCCCAGACTGTACTGATACTA
1 ATAGGGCCCAGGCCCAGACTGTACTGATACTA
70167032 ATAGGGCCCAGGCCCAGACTGTACTGATACTA
1 ATAGGGCCCAGGCCCAGACTGTACTGATACTA
70167064 ATAGGGCCCAGGCCCAGACTGT
1 ATAGGGCCCAGGCCCAGACTGT
70167086 TATTGATCTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.27, T:0.19
Consensus pattern (32 bp):
ATAGGGCCCAGGCCCAGACTGTACTGATACTA
Found at i:70168105 original size:48 final size:48
Alignment explanation
Indices: 70168034--70168175 Score: 194
Period size: 48 Copynumber: 3.0 Consensus size: 48
70168024 ATACTAGGGT
** * *
70168034 TATGTGAGCCAGTGTAAGACCATGCCTGGGACATGGCATCGACCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATCGA
* * * *
70168082 TATGTGAGCCAGTGTGAGGCCATGTTTGGAACATGGCATCGGCATTGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATCGA
* *
70168130 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATC
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATC
70168176 TTACCCTTTT
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 80 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATCGA
Found at i:70169823 original size:28 final size:29
Alignment explanation
Indices: 70169792--70169921 Score: 113
Period size: 29 Copynumber: 4.5 Consensus size: 29
70169782 GTGACGAGAT
70169792 TGGCACTAAGTGTGCATGCTGG-AATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
70169820 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
70169849 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
70169878 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
70169907 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
70169922 GAAATCGAGT
Statistics
Matches: 81, Mismatches: 17, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
28 24 0.30
29 56 0.69
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Done.