Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 237 of 378
Found at i:70169863 original size:29 final size:28
Alignment explanation
Indices: 70169793--70169855 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
70169783 TGACGAGATT
*
70169793 GGCACTAAGTGTGCATGCTGGAATATAT
1 GGCACTAAGTGTGCATGCTGGAATATAC
70169821 GGCACTAAGTGTGCATGCTGGAAATATAC
1 GGCACTAAGTGTGCATGCTGG-AATATAC
70169850 GGCACT
1 GGCACT
70169856 GGGTGTGCGA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 21 0.64
29 12 0.36
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (28 bp):
GGCACTAAGTGTGCATGCTGGAATATAC
Found at i:70175380 original size:40 final size:40
Alignment explanation
Indices: 70175314--70175480 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
70175304 AAATTGAATG
* * *
70175314 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
70175353 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
70175393 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
70175433 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
70175473 ATATCCGG
1 ATATCCGG
70175481 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:70183421 original size:40 final size:40
Alignment explanation
Indices: 70183321--70183486 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 40
70183311 ATTGAATGAC
* * * * *
70183321 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATTAT
* ***
70183361 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATTAT
* ** *
70183401 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTTTTCT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATTAT
* *
70183441 ATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATTAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATTAT
70183481 ATCCGG
1 ATCCGG
70183487 TTATATTCCG
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
39 4 0.04
40 98 0.94
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATTAT
Found at i:70196154 original size:29 final size:29
Alignment explanation
Indices: 70196120--70196251 Score: 212
Period size: 29 Copynumber: 4.6 Consensus size: 29
70196110 TAATCAGCCG
** *
70196120 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
70196149 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
70196178 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
70196207 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
70196236 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
70196252 ATCTCTCAAC
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
28 3 0.03
29 95 0.97
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:70201877 original size:16 final size:18
Alignment explanation
Indices: 70201846--70201878 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
70201836 AACTCGTCAC
70201846 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
70201864 ACTA-CTAT-GTTTTGG
1 ACTATCTATCGTTTTGG
70201879 AATTTGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.18, C:0.15, G:0.18, T:0.48
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:70202641 original size:21 final size:21
Alignment explanation
Indices: 70202612--70202651 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
70202602 TCAATATTGA
*
70202612 ACCTTATGTCGCAACATAGGG
1 ACCTGATGTCGCAACATAGGG
*
70202633 ACCTGATGTTGCAACATAG
1 ACCTGATGTCGCAACATAG
70202652 AGAGCAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (21 bp):
ACCTGATGTCGCAACATAGGG
Found at i:70205570 original size:57 final size:57
Alignment explanation
Indices: 70205482--70205592 Score: 204
Period size: 57 Copynumber: 1.9 Consensus size: 57
70205472 AAATACGTAG
*
70205482 TGTAATATCCTGATTTTCGGCCTAGTCGGAATAGTGGTTTCGTGACCTCAAAATAGT
1 TGTAATATCCTGATTTTCGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAATAGT
*
70205539 TGTAATATCCTGATTTTGGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAAT
1 TGTAATATCCTGATTTTCGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAAT
70205593 CCAAGATAGA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.34
Consensus pattern (57 bp):
TGTAATATCCTGATTTTCGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAATAGT
Found at i:70206167 original size:20 final size:20
Alignment explanation
Indices: 70206142--70206209 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
70206132 GTATTTTGGT
70206142 GTTTTATGATGGAATATGAG
1 GTTTTATGATGGAATATGAG
* * * *
70206162 GTTTTAAATTATGTATTTTG-G
1 GTTTT--ATGATGGAATATGAG
70206183 TGTTTTATGATGGAATATGAG
1 -GTTTTATGATGGAATATGAG
70206204 GTTTTA
1 GTTTTA
70206210 AATTATGTTA
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
20 20 0.56
21 2 0.06
22 14 0.39
ACGTcount: A:0.26, C:0.00, G:0.25, T:0.49
Consensus pattern (20 bp):
GTTTTATGATGGAATATGAG
Found at i:70206184 original size:42 final size:42
Alignment explanation
Indices: 70206131--70206217 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
70206121 GTGAAATTTG
70206131 TGTATTTTGGTGTTTTATGATGGAATATGAGGTTTTAAATTA
1 TGTATTTTGGTGTTTTATGATGGAATATGAGGTTTTAAATTA
70206173 TGTATTTTGGTGTTTTATGATGGAATATGAGGTTTTAAATTA
1 TGTATTTTGGTGTTTTATGATGGAATATGAGGTTTTAAATTA
70206215 TGT
1 TGT
70206218 TAGACAACTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (42 bp):
TGTATTTTGGTGTTTTATGATGGAATATGAGGTTTTAAATTA
Found at i:70206926 original size:46 final size:46
Alignment explanation
Indices: 70206876--70207048 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
70206866 TTGGGCATCT
*
70206876 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACGTCC
*** * * * *
70206922 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCTA-ACGTCC
* * * *
70206969 GAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACGTCC
* *
70207015 GAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70207049 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 69 0.67
47 34 0.33
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACGTCC
Found at i:70207028 original size:93 final size:93
Alignment explanation
Indices: 70206869--70207040 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
70206859 AGGATGTTTG
* * * * * *
70206869 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
70206934 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
70206962 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
70207027 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
70207041 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:70210204 original size:30 final size:30
Alignment explanation
Indices: 70210170--70210226 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
70210160 TAACTCAAAA
70210170 TTTTGCAAAATTACAATTTTGCCCCTAAAC
1 TTTTGCAAAATTACAATTTTGCCCCTAAAC
* * * *
70210200 TTTTGCATATTTACACTTTTTCCCCTA
1 TTTTGCAAAATTACAATTTTGCCCCTA
70210227 GGCTCGGGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.05, T:0.44
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCTAAAC
Found at i:70212927 original size:101 final size:100
Alignment explanation
Indices: 70212706--70213294 Score: 641
Period size: 101 Copynumber: 5.9 Consensus size: 100
70212696 TAAAATGGTT
* * *
70212706 TTAGGTCACTTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATTGTTAGGTCGCATGT-T
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCACATGTGT
** *
70212770 CTTACTAAGTGCATGCTACT--ATGCATACCCGATAG
66 AGTACTAAGTGCAGGCTACTACATG--TACCCGATAG
* * * *
70212805 CTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTGTTAGGTCGCATGTG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCACATGTG
* *
70212870 TAGTACTAAGTGCAGGCTACTATAAGTACCCGATAG
65 TAGTACTAAGTGCAGGCTACTACATGTACCCGATAG
* * * * * *
70212906 CTTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCCA-ATGGTTAGGTCACGTGT
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-CCAGATTGTTAGGTCACATGT
* *
70212970 GTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
64 GTAGTACTAAGTGCAGGCTACTACATGTACCCGATAG
* * * * * * * *
70213007 TTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACT--ATGCATACCCGATAGCTTCGATCACGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATG--TACCAGATTG-TTAGGTCACATG
** *
70213070 TGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTG
63 TGTAGTACTAAGTGCAGGCTACTACATGTACCCGATAG
* * * * * * * * *
70213108 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATAAGTACCCGATAGCTTCGATCACGTGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG-TTAGGTCACATGTG
* * * * *
70213173 TAGTACTAAGTGCAAGCTACTACGTGTATCCAATGG
65 TAGTACTAAGTGCAGGCTACTACATGTACCCGATAG
*
70213209 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCACATGTGT
70213274 AGTACTAAGTGCAGGCTACTA
66 AGTACTAAGTGCAGGCTACTA
70213295 TGCATACCAG
Statistics
Matches: 431, Mismatches: 48, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
98 2 0.00
99 2 0.00
100 123 0.29
101 297 0.69
102 3 0.01
103 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (100 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCACATGTGT
AGTACTAAGTGCAGGCTACTACATGTACCCGATAG
Found at i:70212998 original size:151 final size:150
Alignment explanation
Indices: 70212811--70213294 Score: 666
Period size: 151 Copynumber: 3.2 Consensus size: 150
70212801 ATAGCTTCGA
* *
70212811 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTGTTAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTAC
*
70212876 TAAGTGCAGGCTACTATAAGTACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAAGCTAC
66 TAAGTGCAGGCTACTATAAGTACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTAC
* *
70212941 TACGTGTATCCAATGGTTAGG
131 TACATGTA-CCAATTGTTAGG
*
70212962 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTAC
* *
70213027 TAAGTGTAGGCTACTATGCA-TACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
66 TAAGTGCAGGCTACTAT-AAGTACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
70213091 CTACATGTACCAAATTGTTAGG
130 CTACATGTACC-AATTGTTAGG
* * * * * * * * *
70213113 TCGCATGTGTAGTACTAAGTGCAGGCTACTATAAGTACCCGATAGCTTCGATCACGTGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG-TTAGGTCGCATGTGTAGTA
* *** * * * * *
70213178 CTAAGTGCAAGCTACTACGTGTATCCAAT-GGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTA
65 CTAAGTGCAGGCTACTATAAGTACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
70213242 CTACATGTACCAGATTGTTAGG
130 CTACATGTACCA-ATTGTTAGG
*
70213264 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
70213295 TGCATACCAG
Statistics
Matches: 302, Mismatches: 26, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
150 3 0.01
151 262 0.87
152 37 0.12
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (150 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACTATAAGTACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTAC
TACATGTACCAATTGTTAGG
Found at i:70213106 original size:252 final size:252
Alignment explanation
Indices: 70212706--70213313 Score: 1137
Period size: 252 Copynumber: 2.4 Consensus size: 252
70212696 TAAAATGGTT
* *
70212706 TTAGGTCACTTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATTGTTAGGTCGCATGT-T
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGT
** *
70212770 CTTACTAAGTGCATGCTACTATGCATACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCATACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
70212835 GCTACTACATGTACCAAATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATAAGTACC
131 GCTACTACATGTACCAAATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATAAGTACC
70212900 CGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCCAATGG
196 CGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCCAATGG
70212957 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGT
*
70213022 AGTACTAAGTGTAGGCTACTATGCATACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCATACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
70213087 GCTACTACATGTACCAAATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATAAGTACC
131 GCTACTACATGTACCAAATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATAAGTACC
70213152 CGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCCAATGG
196 CGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCCAATGG
70213209 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGT
* *
70213274 AGTACTAAGTGCAGGCTACTATGCATACCAGAGAGCTTCG
66 AGTACTAAGTGCAGGCTACTATGCATACCCGATAGCTTCG
70213314 GTTACAAGGG
Statistics
Matches: 347, Mismatches: 9, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
251 61 0.18
252 286 0.82
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (252 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCATACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
GCTACTACATGTACCAAATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATAAGTACC
CGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCCAATGG
Found at i:70213295 original size:151 final size:151
Alignment explanation
Indices: 70212706--70213294 Score: 656
Period size: 151 Copynumber: 3.9 Consensus size: 151
70212696 TAAAATGGTT
* * * * *
70212706 TTAGGTCACTTGTGTAGTACTAAGTGCAAGCTACTACATGTA-CCAGATTG-TTAGGTCGCATGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCCA-ATAGCTTAGATCACGTGT
** * * * * * *
70212769 -TCTTACTAAGTGCATGCTACT--ATGCATACCCGATAGCTTCGATCACGTGTGTAGTACTAAGT
65 GTAGTACTAAGTGCAGGCTACTACATG--TACCAGATTG-TTAGGTCACATGTGTAGTACTAAGT
*
70212831 GCAGGCTACTACATGTACCAAATTG
127 GCAGGCTACTACATGTACCAGATTG
* * * * * *
70212856 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATAAGTACCCGATAGCTTCGATCACGTGTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCCAATAGCTTAGATCACGTGTG
* * * *
70212921 TAGTACTAAGTGCAAGCTACTACGTGTATCCA-ATGGTTAGGTCACGTGTGTAGTACTAAGTGCA
66 TAGTACTAAGTGCAGGCTACTACATGTA-CCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCA
70212985 GGCTACTACATGTACCAGATTG
130 GGCTACTACATGTACCAGATTG
* * * * *
70213007 TTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACT--ATGCATACCCGATAGCTTCGATCACGTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAAGCTACTACATG--TACCCAATAGCTTAGATCACGTG
* *
70213070 TGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTGTTAGGTCGCATGTGTAGTACTAAGTGC
64 TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGC
* * * *
70213135 AGGCTACTATAAGTACCCGATAG
129 AGGCTACTACATGTACCAGATTG
* * * * * * *
70213158 CTTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCCAAT-GGTTAGGTCACGTGT
1 -TTAGGTCACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCCAATAGCTTAGATCACGTGT
*
70213222 GTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCA
65 GTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCA
70213287 GGCTACTA
130 GGCTACTA
70213295 TGCATACCAG
Statistics
Matches: 383, Mismatches: 44, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
149 2 0.01
150 43 0.11
151 274 0.72
152 58 0.15
153 2 0.01
154 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (151 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCCAATAGCTTAGATCACGTGTG
TAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAG
GCTACTACATGTACCAGATTG
Found at i:70216489 original size:30 final size:30
Alignment explanation
Indices: 70216453--70216512 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
70216443 TTCCCGAACC
*
70216453 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
70216483 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
70216513 CATATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:70218401 original size:41 final size:41
Alignment explanation
Indices: 70218363--70218515 Score: 148
Period size: 41 Copynumber: 3.7 Consensus size: 41
70218353 AGAGGTACTA
* *
70218363 AAGTACAAATAGGGGCACATATTTGCAATTATGGGGTACCG
1 AAGTACAAACAGGGGCACATATGTGCAATTATGGGGTACCG
* ***
70218404 AAGTAAAAACAGGGGCATGCATGTGCAATT-TAGGGGTACCG
1 AAGTACAAACAGGGGCACATATGTGCAATTAT-GGGGTACCG
* * * * *
70218445 GAGTACAAATAGGGGCACATAGGTGCAATTCA-AGGGTACTG
1 AAGTACAAACAGGGGCACATATGTGCAATT-ATGGGGTACCG
* * *
70218486 AAGCACAAACAGTGGCACATATGTGTAATT
1 AAGTACAAACAGGGGCACATATGTGCAATT
70218516 CATCATTGTT
Statistics
Matches: 88, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
40 1 0.01
41 87 0.99
ACGTcount: A:0.35, C:0.15, G:0.28, T:0.22
Consensus pattern (41 bp):
AAGTACAAACAGGGGCACATATGTGCAATTATGGGGTACCG
Found at i:70218510 original size:82 final size:82
Alignment explanation
Indices: 70218364--70218515 Score: 189
Period size: 82 Copynumber: 1.9 Consensus size: 82
70218354 GAGGTACTAA
** * * **
70218364 AGTACAAATAGGGGCACATATTTGCAATTATGGGGTACCGAAGTAAAAACAGGGGCATGCATGTG
1 AGTACAAATAGGGGCACATAGGTGCAATTATAGGGTACCGAAGCAAAAACAGGGGCACACATGTG
70218429 CAATTTAGGGGTACCGG
66 CAATTTAGGGGTACCGG
* * * *
70218446 AGTACAAATAGGGGCACATAGGTGCAATTCA-AGGGTACTGAAGCACAAACAGTGGCACATATGT
1 AGTACAAATAGGGGCACATAGGTGCAATT-ATAGGGTACCGAAGCAAAAACAGGGGCACACATGT
*
70218510 GTAATT
65 GCAATT
70218516 CATCATTGTT
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
82 57 0.98
83 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.28, T:0.22
Consensus pattern (82 bp):
AGTACAAATAGGGGCACATAGGTGCAATTATAGGGTACCGAAGCAAAAACAGGGGCACACATGTG
CAATTTAGGGGTACCGG
Found at i:70227108 original size:71 final size:71
Alignment explanation
Indices: 70227024--70227187 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
70227014 CGATTTGTCT
70227024 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
70227089 CTTTCA
66 CTTTCA
* *
70227095 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
70227160 CTTTCA
66 CTTTCA
70227166 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70227188 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:70227225 original size:71 final size:70
Alignment explanation
Indices: 70227024--70227221 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
70227014 CGATTTGTCT
* * * * *
70227024 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70227089 CTTTCA
65 CTTTCA
* * * *
70227095 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70227160 CTTTCA
65 CTTTCA
* *
70227166 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
70227222 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:70234494 original size:70 final size:71
Alignment explanation
Indices: 70234411--70234573 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
70234401 CGATTTGTCT
70234411 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70234475 CTTTCA
66 CTTTCA
*
70234481 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70234546 CTTTCA
66 CTTTCA
70234552 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70234574 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:70234611 original size:71 final size:70
Alignment explanation
Indices: 70234411--70234607 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
70234401 CGATTTGTCT
* * * *
70234411 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70234475 CTTTCA
65 CTTTCA
* * * *
70234481 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70234546 CTTTCA
65 CTTTCA
* *
70234552 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
70234608 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:70241814 original size:42 final size:42
Alignment explanation
Indices: 70241700--70241848 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 42
70241690 TAAAATATCA
* *
70241700 TGTAAGACCGTGTCTGGGACACAGGCTTCGAT-TTGAGATTTACG
1 TGTAAGACCATGTCTGGGACACAGGCATCGATATT--GATTT-CG
*
70241744 TGTAAGACCATGTCTTGGACATCA-GCATC-ATATCTGATTTCG
1 TGTAAGACCATGTCTGGGACA-CAGGCATCGATAT-TGATTTCG
* * *
70241786 TGTAAGACTC-TGTCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGAC-CATGTCTGGGACACAGGCATCGATATTG-ATTTCG
*
70241829 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
70241849 GTTGGCATTG
Statistics
Matches: 89, Mismatches: 8, Indels: 17
0.78 0.07 0.15
Matches are distributed among these distances:
41 1 0.01
42 28 0.31
43 33 0.37
44 24 0.27
45 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACACAGGCATCGATATTGATTTCG
Found at i:70241844 original size:43 final size:43
Alignment explanation
Indices: 70241698--70241848 Score: 150
Period size: 42 Copynumber: 3.5 Consensus size: 43
70241688 TCTAAAATAT
* *
70241698 CATGTAAGACCGTGTCTGGGACACAGGCTTCGAT-TTGAGATTTA
1 CATGTAAGACCATGTCTGGGACACAGGCATCGATATTGA-A-TTA
* * *
70241742 CGTGTAAGACCATGTCTTGGACATCA-GCATC-ATATCTG-ATTT
1 CATGTAAGACCATGTCTGGGACA-CAGGCATCGATAT-TGAATTA
* *
70241784 CGTGTAAGACTC-TGTCTGGGACAGAGGCATCGATATTGAATTA
1 CATGTAAGAC-CATGTCTGGGACACAGGCATCGATATTGAATTA
*
70241827 CATGTAAGACCACGTCTGGGAC
1 CATGTAAGACCATGTCTGGGAC
70241849 GTTGGCATTG
Statistics
Matches: 89, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
41 1 0.01
42 30 0.34
43 29 0.33
44 25 0.28
45 4 0.04
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACACAGGCATCGATATTGAATTA
Found at i:70250139 original size:41 final size:41
Alignment explanation
Indices: 70250094--70250276 Score: 237
Period size: 41 Copynumber: 4.5 Consensus size: 41
70250084 TCAGAGATAT
*
70250094 TCAGGCTT-TATGCCTAGCAGGCTTTATGCCGGTGAATTATA
1 TCAGGCTTAT-TGCCTAGCAGGCTTTATGCCGGTGTATTATA
* *
70250135 TCAGGCTTATTGCCTAACAGGCTTTATGCCGGTGTATTATT
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
* * *
70250176 TCAGGCTTATTTCCTTGCAGGCTTTATGCCGGTGTATTATT
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
* * *
70250217 TCAGGCATATTGCCTAGCAGGCTCTGTGCCGGTGTATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
70250258 -CTAGGCTT-TATGCCTAGCA
1 TC-AGGCTTAT-TGCCTAGCA
70250277 AATTTTATGT
Statistics
Matches: 126, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
40 2 0.02
41 123 0.98
42 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (41 bp):
TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
Found at i:70250666 original size:2 final size:2
Alignment explanation
Indices: 70250659--70250693 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
70250649 TGGAAATGTC
70250659 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70250694 GAAATTGATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:70251053 original size:2 final size:2
Alignment explanation
Indices: 70251046--70251083 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
70251036 GATGTGGTTG
70251046 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70251084 GTTGGTCGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70253276 original size:68 final size:67
Alignment explanation
Indices: 70253204--70253353 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
70253194 CATCATGTGT
* * * *
70253204 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
70253266 ATGTAG
62 ATGTAG
** * *
70253272 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
70253337 AG
66 AG
70253339 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
70253354 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:70253309 original size:64 final size:64
Alignment explanation
Indices: 70253228--70253411 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
70253218 AGACATTATG
* *
70253228 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
70253292 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70253357 AA
63 AA
* * * *
70253359 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
70253412 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70256412 original size:18 final size:18
Alignment explanation
Indices: 70256389--70256424 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
70256379 TGCTCAGAAT
70256389 TGGGCATACAGGCAAAGA
1 TGGGCATACAGGCAAAGA
70256407 TGGGCATACAGGCAAAGA
1 TGGGCATACAGGCAAAGA
70256425 CACGGGCGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.33, T:0.11
Consensus pattern (18 bp):
TGGGCATACAGGCAAAGA
Found at i:70259387 original size:15 final size:15
Alignment explanation
Indices: 70259367--70259401 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
70259357 CTTGAAGCCA
70259367 AAACTCACTTTTACT
1 AAACTCACTTTTACT
70259382 AAACTCACTTTTACT
1 AAACTCACTTTTACT
70259397 AAACT
1 AAACT
70259402 TAGCATACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (15 bp):
AAACTCACTTTTACT
Found at i:70280806 original size:25 final size:25
Alignment explanation
Indices: 70280772--70280827 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
70280762 AGTATGGGGA
70280772 AACATATAGAGAGTATGGTAATGCG
1 AACATATAGAGAGTATGGTAATGCG
70280797 AACATATAGAGAGTATGGTAATGCG
1 AACATATAGAGAGTATGGTAATGCG
70280822 AA-ATAT
1 AACATAT
70280828 GACTCATCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 4 0.13
25 27 0.87
ACGTcount: A:0.43, C:0.07, G:0.25, T:0.25
Consensus pattern (25 bp):
AACATATAGAGAGTATGGTAATGCG
Found at i:70288119 original size:30 final size:30
Alignment explanation
Indices: 70288078--70288135 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
70288068 AAAATCATAT
70288078 TTTGGCAAAATTACAATTTTGCCCCTAAAC
1 TTTGGCAAAATTACAATTTTGCCCCTAAAC
* *
70288108 TTTGTCAAAATTACATTTTTGCCCCTAA
1 TTTGGCAAAATTACAATTTTGCCCCTAA
70288136 GCTCGTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (30 bp):
TTTGGCAAAATTACAATTTTGCCCCTAAAC
Found at i:70305568 original size:27 final size:27
Alignment explanation
Indices: 70305535--70305706 Score: 229
Period size: 27 Copynumber: 6.4 Consensus size: 27
70305525 CGGATAAGTT
* *
70305535 GTAGAATTACCGAAATACCCTTATAAG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
70305562 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
** *
70305589 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
70305616 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
70305643 ATAGAATTACCAAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * *
70305670 GTAAAATTATCGAGATACCCTTGT-GG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
70305696 GTAAAATTACC
1 GTAGAATTACC
70305707 ATTTTGCCCC
Statistics
Matches: 129, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 12 0.09
27 117 0.91
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:70306392 original size:2 final size:2
Alignment explanation
Indices: 70306385--70306434 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
70306375 GCTTCGCCAC
70306385 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70306427 AT AT AT AT
1 AT AT AT AT
70306435 CTGTTTTGGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70310582 original size:29 final size:29
Alignment explanation
Indices: 70310476--70310637 Score: 150
Period size: 29 Copynumber: 5.6 Consensus size: 29
70310466 GTGACGAGAT
*
70310476 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
70310505 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
70310534 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* ** ***
70310563 CGGCACTGGGTGTGCGAGCTCGG-AGGGTA
1 TGGCACTAAGTGTGCGAGCT-GGAAATATA
** *
70310592 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
70310619 CGTGGCACTAAGTGTGCGA
1 --TGGCACTAAGTGTGCGA
70310638 AATCGAGTAG
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 2 0.02
28 1 0.01
29 105 0.95
30 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:70318615 original size:29 final size:29
Alignment explanation
Indices: 70318509--70318670 Score: 150
Period size: 29 Copynumber: 5.6 Consensus size: 29
70318499 GTGACGAGAT
*
70318509 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
70318538 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
70318567 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* ** ***
70318596 CGGCACTGGGTGTGCGAGCTCGG-AGGGTA
1 TGGCACTAAGTGTGCGAGCT-GGAAATATA
** *
70318625 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
70318652 CGTGGCACTAAGTGTGCGA
1 --TGGCACTAAGTGTGCGA
70318671 AATCGAGTAG
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 2 0.02
28 1 0.01
29 105 0.95
30 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:70326552 original size:29 final size:28
Alignment explanation
Indices: 70326519--70326619 Score: 132
Period size: 29 Copynumber: 3.6 Consensus size: 28
70326509 GTGACGAGAT
70326519 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAA-ATA
70326548 TGGCACTAAGTGTGCGTGCTGG-AAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAATA
**
70326575 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGG-AAAATA
* **
70326604 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
70326620 AGTTCGGAGG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
27 23 0.36
28 2 0.03
29 39 0.61
ACGTcount: A:0.27, C:0.16, G:0.34, T:0.24
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGTGCTGGAAAATA
Found at i:70326583 original size:27 final size:27
Alignment explanation
Indices: 70326519--70326599 Score: 126
Period size: 27 Copynumber: 2.9 Consensus size: 27
70326509 GTGACGAGAT
70326519 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGG-AA-ATA
70326548 TGGCACTAAGTGTGCGTGCTGGAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATA
**
70326575 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
70326600 AATACGGCAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
27 26 0.52
28 2 0.04
29 22 0.44
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (27 bp):
TGGCACTAAGTGTGCGTGCTGGAAATA
Found at i:70334573 original size:29 final size:29
Alignment explanation
Indices: 70334540--70334642 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
70334530 GTGACGAGAT
70334540 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
70334569 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
70334598 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
70334627 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
70334643 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:70342682 original size:29 final size:29
Alignment explanation
Indices: 70342576--70342737 Score: 150
Period size: 29 Copynumber: 5.6 Consensus size: 29
70342566 GTGACGAGAT
*
70342576 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
70342605 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
70342634 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* ** ***
70342663 CGGCACTGGGTGTGCGAGCTCGG-AGGGTA
1 TGGCACTAAGTGTGCGAGCT-GGAAATATA
** *
70342692 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
70342719 CGTGGCACTAAGTGTGCGA
1 --TGGCACTAAGTGTGCGA
70342738 AATCGAGTAG
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 2 0.02
28 1 0.01
29 105 0.95
30 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:70355749 original size:53 final size:53
Alignment explanation
Indices: 70355663--70355769 Score: 135
Period size: 53 Copynumber: 2.0 Consensus size: 53
70355653 CTTTGCTTTT
* * * *
70355663 TGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTACCTTA
1 TGAACTCACCATTGCCATGTCTTGACATAGTCTTACATGGGATCCTTACCTTA
* * *
70355716 TGAACTCACCATTGCCATG-CATTGGCATAGTCTTACATGGGATCTTTGCCTTA
1 TGAACTCACCATTGCCATGTC-TTGACATAGTCTTACATGGGATCCTTACCTTA
70355769 T
1 T
70355770 CGTAGTTTAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
52 1 0.02
53 45 0.98
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.36
Consensus pattern (53 bp):
TGAACTCACCATTGCCATGTCTTGACATAGTCTTACATGGGATCCTTACCTTA
Found at i:70363182 original size:53 final size:53
Alignment explanation
Indices: 70363114--70363218 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 53
70363104 TTCCTTTTTA
* * *
70363114 AACTTACCATTTCCATGT-CTTGACATGCTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTTCCAT-TCCTTGACATGCTCTTACATGGGATCCTTGCCTTATG
* * * *
70363167 AACTCACCATTTCCATTCCTTGGCATGGTCTTACATGGGATCTTTGTCTTAT
1 AACTCACCATTTCCATTCCTTGACATGCTCTTACATGGGATCCTTGCCTTAT
70363219 CATAGTTTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.02
53 43 0.98
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (53 bp):
AACTCACCATTTCCATTCCTTGACATGCTCTTACATGGGATCCTTGCCTTATG
Found at i:70364973 original size:7 final size:6
Alignment explanation
Indices: 70364950--70365036 Score: 88
Period size: 7 Copynumber: 13.5 Consensus size: 6
70364940 GTTTTGTGTG
70364950 TTTTC- TTTTCT TTTTCT GTTTTCT GTTTTCT GTTTT-T TTTTCTT TTTTCT
1 TTTTCT TTTTCT TTTTCT -TTTTCT -TTTTCT -TTTTCT TTTTC-T TTTTCT
70365000 TTTTCAT TTTTCCT TTTTCCT TTTTCCT TTTTCT TTT
1 TTTTC-T TTTT-CT TTTT-CT TTTT-CT TTTTCT TTT
70365037 AATGTTATCT
Statistics
Matches: 76, Mismatches: 0, Indels: 11
0.87 0.00 0.13
Matches are distributed among these distances:
5 9 0.12
6 18 0.24
7 48 0.63
8 1 0.01
ACGTcount: A:0.01, C:0.17, G:0.03, T:0.78
Consensus pattern (6 bp):
TTTTCT
Found at i:70365011 original size:32 final size:32
Alignment explanation
Indices: 70364948--70365036 Score: 94
Period size: 32 Copynumber: 2.7 Consensus size: 32
70364938 TTGTTTTGTG
*
70364948 TGTTTTCTTTTCTTTTTCTGTTTTCTGTTTT-C
1 TGTTTTTTTTTCTTTTTCT-TTTTCTGTTTTCC
70364980 TGTTTTTTTTTCTTTTTTCTTTTTCAT-TTTTCC
1 TGTTTTTTTTTC-TTTTTCTTTTTC-TGTTTTCC
70365013 T-TTTTCCTTTTTCCTTTTTCTTTT
1 TGTTTT--TTTTT-CTTTTTCTTTT
70365037 AATGTTATCT
Statistics
Matches: 50, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
32 24 0.48
33 10 0.20
34 15 0.30
35 1 0.02
ACGTcount: A:0.01, C:0.17, G:0.04, T:0.78
Consensus pattern (32 bp):
TGTTTTTTTTTCTTTTTCTTTTTCTGTTTTCC
Found at i:70367557 original size:43 final size:42
Alignment explanation
Indices: 70367509--70367665 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
70367499 AGCTCGTACA
*
70367509 ATGCCAACGTCCCAGACGTGGTCTTACATGTAACCAAATATAG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAACCAAATAT-G
* * * *
70367552 ATGCC-ACTGTCCCAGACAAGGTCTTACATGAAATCAAATATC
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAACCAAATATG
* * ** *
70367594 ATGCCGATGTCCCAGACATGGTCTTACGCGTAAATCTCAAAT-CG
1 ATGCCAACGTCCCAGACATGGTCTTACATGT-AA-C-CAAATATG
* *
70367638 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
70367666 CGAAATCACA
Statistics
Matches: 93, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
42 26 0.28
43 37 0.40
44 25 0.27
45 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAACCAAATATG
Found at i:70374028 original size:33 final size:33
Alignment explanation
Indices: 70373986--70374051 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
70373976 TGGAAACCAC
70373986 TTAAAAATGTAACCAAGATTAGAAGCTTTTTGG
1 TTAAAAATGTAACCAAGATTAGAAGCTTTTTGG
*
70374019 TTAAAAATGTAACCGAGATTAGAAGCTTTTTGG
1 TTAAAAATGTAACCAAGATTAGAAGCTTTTTGG
70374052 GCTTAGCCGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (33 bp):
TTAAAAATGTAACCAAGATTAGAAGCTTTTTGG
Found at i:70376031 original size:46 final size:46
Alignment explanation
Indices: 70375974--70376149 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
70375964 TGTTTGGGCA
*
70375974 TCCGAATTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
70376020 TTCGAACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAAGTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* *
70376065 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70376113 CCCGAGCTCGCTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70376150 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.05
45 1 0.01
46 63 0.57
47 28 0.25
48 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70376129 original size:93 final size:93
Alignment explanation
Indices: 70375970--70376142 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
70375960 AGGATGTTTG
* * ** *
70375970 GGCATCCGAATTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGCTGAG
70376035 TTGAGTCCGAGTTCAAGAGATGTAAGTA
66 TTGAGTCCGAGTTCAAGAGATGTAAGTA
* *
70376063 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGCTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGCTGAG
70376128 TTGAGTCCGAGTTCA
66 TTGAGTCCGAGTTCA
70376143 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGCTGAG
TTGAGTCCGAGTTCAAGAGATGTAAGTA
Found at i:70378922 original size:15 final size:15
Alignment explanation
Indices: 70378902--70378970 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
70378892 GTATCTTGGG
70378902 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* * *
70378917 TCTCTTTATTCTTGA
1 TTTCTTTATCCTGGA
* *
70378932 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
70378947 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
70378962 TTTCTTTAT
1 TTTCTTTAT
70378971 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.12, C:0.17, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:70378971 original size:30 final size:30
Alignment explanation
Indices: 70378893--70378980 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
70378883 CATAATATCG
* * * *
70378893 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
70378923 TATTCTT-GATTTCTTTATTCTGGGTTTCTC
1 TA-TCTTGGATTTCTTTATTCTGGATTTCTC
*
70378953 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
70378981 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 11 0.22
30 35 0.70
31 4 0.08
ACGTcount: A:0.10, C:0.17, G:0.15, T:0.58
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:70378981 original size:14 final size:14
Alignment explanation
Indices: 70378902--70378981 Score: 61
Period size: 15 Copynumber: 5.4 Consensus size: 14
70378892 GTATCTTGGG
*
70378902 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
* *
70378917 TCTCTTTATTCTTGA
1 TTTCTTTATTC-GGA
*
70378932 TTTCTTTATTCTGGG
1 TTTCTTTATTC-GGA
* *
70378947 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
70378962 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
70378976 TTTCTT
1 TTTCTT
70378982 ATTATCTTTG
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
14 9 0.17
15 42 0.81
16 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.12, T:0.60
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:70384170 original size:15 final size:15
Alignment explanation
Indices: 70384131--70384210 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
70384121 GTATCTTGGG
* *
70384131 TTTCTTTATCCTAGA
1 TTTCTTTATTCTGGA
*
70384146 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
70384161 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
70384176 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
70384191 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
70384205 TTTCTT
1 TTTCTT
70384211 ATTATCTTTG
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
14 10 0.19
15 42 0.78
16 2 0.04
ACGTcount: A:0.11, C:0.17, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:70384191 original size:30 final size:30
Alignment explanation
Indices: 70384122--70384209 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
70384112 CATAATATCG
* * * * *
70384122 TATCTTGGGTTTCTTTATCCTAGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
70384152 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
70384182 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
70384210 TATTATCTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
29 8 0.16
30 40 0.82
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:70386560 original size:46 final size:46
Alignment explanation
Indices: 70386504--70386725 Score: 302
Period size: 46 Copynumber: 4.8 Consensus size: 46
70386494 TGTTTGGGCA
* *
70386504 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *** * * * * *
70386550 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTA-ACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-ACG
70386597 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
70386643 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
70386689 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70386726 GCGGGTTACA
Statistics
Matches: 154, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
46 119 0.77
47 35 0.23
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:70386659 original size:93 final size:93
Alignment explanation
Indices: 70386500--70386725 Score: 320
Period size: 93 Copynumber: 2.4 Consensus size: 93
70386490 AGGATGTTTG
* * *
70386500 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
70386565 TTGAGTCCGAGTTCA-A-GAGATG-TAAC
66 TTGAGTCCGAGTTCATATG-GATGCGAAC
*
70386591 TAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTG
1 --GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTG
70386656 AGTTGAGTCCGAGTTCACTTATGGATGCGAAC
64 AGTTGAGTCCGAGTTCA--TATGGATGCGAAC
70386688 -GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70386726 GCGGGTTACA
Statistics
Matches: 123, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
92 36 0.29
93 76 0.62
94 2 0.02
96 5 0.04
97 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCATATGGATGCGAAC
Found at i:70397124 original size:40 final size:40
Alignment explanation
Indices: 70397043--70397265 Score: 215
Period size: 40 Copynumber: 5.6 Consensus size: 40
70397033 GCTACTCGTT
* * *
70397043 CAAATGCCTTCAGGACATAGCCCG-GTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATT-TAGTAACTCGCA
* * *
70397083 CAAATGCCTTCGGGACTTAACCCGAATTTAGTGACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCA
* *
70397123 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCA
* * *
70397163 CCAATGCCTTTGAG-CTTAGCCCGGAA-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTTAGTAACTCGCA
* * * * *
70397202 CAAATGCGTTC-GGATCTTAGTCC-AGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGA-ATTTAGTAAC-TCGCA
70397243 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
70397266 GACATCATTC
Statistics
Matches: 150, Mismatches: 24, Indels: 17
0.79 0.13 0.09
Matches are distributed among these distances:
38 2 0.01
39 29 0.19
40 106 0.71
41 13 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCA
Found at i:70403938 original size:29 final size:29
Alignment explanation
Indices: 70403848--70404036 Score: 238
Period size: 29 Copynumber: 6.5 Consensus size: 29
70403838 ACTCGATTTC
* * **
70403848 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
70403877 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
70403905 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
70403935 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
70403964 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
70403993 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
70404022 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
70404037 ATCTCGTCAC
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
28 2 0.01
29 137 0.98
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:70411931 original size:29 final size:29
Alignment explanation
Indices: 70411841--70412000 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
70411831 ACTCGATTTC
* * **
70411841 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
70411870 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
70411898 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
70411928 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
70411957 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
70411986 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
70412001 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:70415826 original size:17 final size:18
Alignment explanation
Indices: 70415784--70415832 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
70415774 AGTTGAAAAG
70415784 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
70415803 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
70415820 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
70415833 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:70416716 original size:40 final size:38
Alignment explanation
Indices: 70416650--70416814 Score: 154
Period size: 39 Copynumber: 4.2 Consensus size: 38
70416640 AAATTGAATG
* * *
70416650 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCTGG-TATT
* * **
70416689 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCTGGTATT
70416728 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGCCCGAAGGCAATT-GTGCTG-G-TATT
* * **
70416767 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCTGGT-ATT
70416807 ATATCCGG
1 ATATCCGG
70416815 TTATATTCCG
Statistics
Matches: 103, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
37 3 0.03
38 14 0.14
39 43 0.42
40 41 0.40
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (38 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCTGGTATT
Found at i:70416781 original size:78 final size:78
Alignment explanation
Indices: 70416650--70416798 Score: 203
Period size: 78 Copynumber: 1.9 Consensus size: 78
70416640 AAATTGAATG
*
70416650 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
70416715 TTGTGCTAGTGGT
66 TTGTGCTAGTGGT
* * ** *
70416728 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
70416791 ATTTGTGC
64 AATTGTGC
70416799 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 4 0.06
78 58 0.94
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGT
Found at i:70423811 original size:17 final size:18
Alignment explanation
Indices: 70423769--70423817 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
70423759 AGTTGAAAAG
70423769 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
70423788 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
70423805 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
70423818 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:70424705 original size:40 final size:40
Alignment explanation
Indices: 70424639--70424805 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
70424629 AAATTGAATG
* * *
70424639 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
70424678 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
70424718 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
70424758 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
70424798 ATATCCGG
1 ATATCCGG
70424806 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:70429269 original size:15 final size:16
Alignment explanation
Indices: 70429233--70429262 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
70429223 ACATATCATT
70429233 TATTTCATTATACCAA
1 TATTTCATTATACCAA
70429249 TATTTCA-TATACCA
1 TATTTCATTATACCA
70429263 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (16 bp):
TATTTCATTATACCAA
Found at i:70431195 original size:30 final size:30
Alignment explanation
Indices: 70431161--70431221 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
70431151 TCCTTAACTC
70431161 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
70431191 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
70431221 A
1 A
70431222 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:70432895 original size:31 final size:31
Alignment explanation
Indices: 70432813--70432898 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
70432803 TCAATCTCAG
* *
70432813 CATAT-ACTGGGCCAAAGCCTATACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
70432843 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
70432874 CATATCATTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
70432899 TGTAACAATA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:70433161 original size:26 final size:25
Alignment explanation
Indices: 70433116--70433207 Score: 148
Period size: 25 Copynumber: 3.6 Consensus size: 25
70433106 CTCTTTTAAT
*
70433116 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
70433141 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGC-AAAGCCCTTTTCGGTA
*
70433167 AATTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
70433192 AACTGGGGCATAGCCC
1 AACTGGGGCAAAGCCC
70433208 ATTTGCACTT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
25 39 0.63
26 23 0.37
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:70433277 original size:18 final size:19
Alignment explanation
Indices: 70433254--70433290 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
70433244 GCATAAATGA
70433254 ATACAT-CATGTGCATATC
1 ATACATACATGTGCATATC
70433272 ATACATAACATGTGCATAT
1 ATACAT-ACATGTGCATAT
70433291 TGTATCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (19 bp):
ATACATACATGTGCATATC
Found at i:70433370 original size:25 final size:25
Alignment explanation
Indices: 70433342--70433389 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70433332 ATAATTAAAC
* **
70433342 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
70433367 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
70433390 CATGTTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:70435513 original size:3 final size:3
Alignment explanation
Indices: 70435505--70435538 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
70435495 ATTTAATCAC
70435505 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
70435539 TTCATAAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:70437672 original size:31 final size:31
Alignment explanation
Indices: 70437590--70437675 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
70437580 TCAATCTCAG
*
70437590 CATAT-ACTGGGCCGAAGCCTATACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
70437620 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
70437651 CATATCATTGGGCCAAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
70437676 TGTAACAATA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:70437938 original size:26 final size:25
Alignment explanation
Indices: 70437893--70437984 Score: 148
Period size: 25 Copynumber: 3.6 Consensus size: 25
70437883 CTCTTTTAAT
*
70437893 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
70437918 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGC-AAAGCCCTTTTCGGTA
*
70437944 AATTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
70437969 AACTGGGGCATAGCCC
1 AACTGGGGCAAAGCCC
70437985 ATTTGCACTT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
25 39 0.63
26 23 0.37
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:70438054 original size:18 final size:19
Alignment explanation
Indices: 70438031--70438067 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
70438021 GCATAAATGA
70438031 ATACAT-CATGTGCATATC
1 ATACATACATGTGCATATC
70438049 ATACATAACATGTGCATAT
1 ATACAT-ACATGTGCATAT
70438068 TGTATCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (19 bp):
ATACATACATGTGCATATC
Found at i:70438147 original size:25 final size:25
Alignment explanation
Indices: 70438119--70438166 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70438109 ATAATTAAAC
* **
70438119 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
70438144 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
70438167 CATGTTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:70440315 original size:3 final size:3
Alignment explanation
Indices: 70440307--70440355 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
70440297 ATTTAATCAC
70440307 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
70440355 T
1 T
70440356 TTCATAAACA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:70442964 original size:71 final size:71
Alignment explanation
Indices: 70442848--70443011 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
70442838 CGATTTGTCT
*
70442848 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGTGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
70442913 CTTTCA
66 CTTTCA
* *
70442919 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
70442984 CTTTCA
66 CTTTCA
70442990 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70443012 GATACATCTC
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:70443049 original size:71 final size:70
Alignment explanation
Indices: 70442848--70443045 Score: 240
Period size: 71 Copynumber: 2.8 Consensus size: 70
70442838 CGATTTGTCT
* * * * * *
70442848 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGTGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70442913 CTTTCA
65 CTTTCA
* * * *
70442919 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70442984 CTTTCA
65 CTTTCA
* *
70442990 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
70443046 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 93 0.79
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:70445128 original size:24 final size:22
Alignment explanation
Indices: 70445083--70445155 Score: 76
Period size: 23 Copynumber: 3.1 Consensus size: 22
70445073 TAAGTGAAAA
70445083 TATATGTTTATATTTTTCAAAAATTT
1 TATAT-TTT-TATTTTT-AAAAA-TT
70445109 TATATTTTTATTTTTAAAAATT
1 TATATTTTTATTTTTAAAAATT
*
70445131 TAAATTTTTTAATTTTT-AAAATT
1 TATA-TTTTT-ATTTTTAAAAATT
70445154 TA
1 TA
70445156 GGTCTAACTA
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
22 5 0.11
23 18 0.41
24 13 0.30
25 3 0.07
26 5 0.11
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (22 bp):
TATATTTTTATTTTTAAAAATT
Found at i:70446638 original size:23 final size:23
Alignment explanation
Indices: 70446594--70446638 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
70446584 TAAATTTTAA
*
70446594 ATTATTTAGTGATAATACTTAGG
1 ATTATTTAGTGATAACACTTAGG
*
70446617 ATTATTTAGTGATAACATTTAG
1 ATTATTTAGTGATAACACTTAG
70446639 CAAAAATCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.16, T:0.44
Consensus pattern (23 bp):
ATTATTTAGTGATAACACTTAGG
Found at i:70458961 original size:18 final size:18
Alignment explanation
Indices: 70458938--70458983 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
70458928 GGCAACCCAC
70458938 ATTTATTTTCATTTA-GTA
1 ATTTATTTTC-TTTATGTA
*
70458956 ATTTATTTTCTTTATTTA
1 ATTTATTTTCTTTATGTA
70458974 ATTTAATTTT
1 ATTT-ATTTT
70458984 GGATTCTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 4 0.16
18 16 0.64
19 5 0.20
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.67
Consensus pattern (18 bp):
ATTTATTTTCTTTATGTA
Found at i:70464596 original size:46 final size:45
Alignment explanation
Indices: 70464495--70464588 Score: 136
Period size: 46 Copynumber: 2.1 Consensus size: 45
70464485 TGTAACCCGC
* * *
70464495 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAA
*
70464541 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAA
70464585 CCAT
1 CCAT
70464589 CTTAGTGACA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 9 0.20
46 35 0.80
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAA
Found at i:70472343 original size:19 final size:19
Alignment explanation
Indices: 70472306--70472360 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
70472296 TTTTTAAAAA
*
70472306 TATAAAT-TTTGGAACTTTT
1 TATAAATATTTTGAA-TTTT
70472325 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
70472343 TA-AAATTTATTTTGAATT
1 TATAAA--TATTTTGAATT
70472361 ATTTTGTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 3 0.10
18 5 0.16
19 16 0.52
20 7 0.23
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:70472745 original size:18 final size:18
Alignment explanation
Indices: 70472726--70472761 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
70472716 TAGAGTTCTT
*
70472726 AAATTTTTTATAATTTTTA
1 AAATATTTT-TAATTTTTA
70472745 AAATATTTTTAATTTTT
1 AAATATTTTTAATTTTT
70472762 CATTCATCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
AAATATTTTTAATTTTTA
Found at i:70474963 original size:42 final size:42
Alignment explanation
Indices: 70474818--70475005 Score: 171
Period size: 42 Copynumber: 4.5 Consensus size: 42
70474808 GTAAATATCA
* * * *
70474818 CTATAGAACATGACTTTTAGCGGCATTTTTCCCACTAACACTG
1 CTATAGAACAAGACCTTTAGCGGCA-TTTTCCCACAAACGCTG
* * * * * * *
70474861 CTA-AAAACATGACCTTTAACGGCATTTTTCTACAAATGCTT
1 CTATAGAACAAGACCTTTAGCGGCATTTTCCCACAAACGCTG
70474902 CTATAGAACAAGACCTTTAGCGGCATTTTCCCACAAACGCTG
1 CTATAGAACAAGACCTTTAGCGGCATTTTCCCACAAACGCTG
* ** * * * *
70474944 CTATAGAACAAGACATTTAGCAACACTTTTCTCATAAACACCG
1 CTATAGAACAAGACCTTTAGCGGCA-TTTTCCCACAAACGCTG
* *
70474987 TTATAGAACATGACCTTTA
1 CTATAGAACAAGACCTTTA
70475006 ATGTGCTCTC
Statistics
Matches: 117, Mismatches: 26, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
41 14 0.12
42 71 0.61
43 32 0.27
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.30
Consensus pattern (42 bp):
CTATAGAACAAGACCTTTAGCGGCATTTTCCCACAAACGCTG
Found at i:70474974 original size:84 final size:84
Alignment explanation
Indices: 70474818--70474975 Score: 201
Period size: 84 Copynumber: 1.9 Consensus size: 84
70474808 GTAAATATCA
* * * * * **
70474818 CTATAGAACATGACTTTTAGCGGCATTTTTCCCACTAACACTGCTAAAAACATGACCTTTAACGG
1 CTATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACACTGCTAAAAACAAGACATTTAACAA
*
70474883 CATTTTTCTACAAATGCTT
66 CACTTTTCTACAAATGCTT
* * *
70474902 CTATAGAACAAGACCTTTAGCGGCA-TTTTCCCACAAACGCTGCTATAGAACAAGACATTTAGCA
1 CTATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACACTGCTA-AAAACAAGACATTTAACA
70474966 ACACTTTTCT
65 ACACTTTTCT
70474976 CATAAACACC
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
83 18 0.29
84 44 0.71
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (84 bp):
CTATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACACTGCTAAAAACAAGACATTTAACAA
CACTTTTCTACAAATGCTT
Found at i:70474993 original size:43 final size:42
Alignment explanation
Indices: 70474902--70475005 Score: 118
Period size: 43 Copynumber: 2.5 Consensus size: 42
70474892 ACAAATGCTT
** * *
70474902 CTATAGAACAAGACCTTTAGCGGCATTTTCCCACAAACGCTG
1 CTATAGAACAAGACCTTTAGCAACATTTTCCCACAAACACCG
* * *
70474944 CTATAGAACAAGACATTTAGCAACACTTTTCTCATAAACACCG
1 CTATAGAACAAGACCTTTAGCAACA-TTTTCCCACAAACACCG
* *
70474987 TTATAGAACATGACCTTTA
1 CTATAGAACAAGACCTTTA
70475006 ATGTGCTCTC
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 22 0.43
43 29 0.57
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (42 bp):
CTATAGAACAAGACCTTTAGCAACATTTTCCCACAAACACCG
Found at i:70478793 original size:35 final size:35
Alignment explanation
Indices: 70478742--70478811 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
70478732 GACGAGCTTG
70478742 CTGCTTGCGAGCTGCGCAACTGACTACCGATTGCA
1 CTGCTTGCGAGCTGCGCAACTGACTACCGATTGCA
* *
70478777 CTGCTTGCGAGTTGCGCCACTGACTACCGATTGCA
1 CTGCTTGCGAGCTGCGCAACTGACTACCGATTGCA
70478812 AGGGCTGAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.19, C:0.31, G:0.26, T:0.24
Consensus pattern (35 bp):
CTGCTTGCGAGCTGCGCAACTGACTACCGATTGCA
Found at i:70478810 original size:19 final size:19
Alignment explanation
Indices: 70478754--70478810 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
70478744 GCTTGCGAGC
*
70478754 TGCGCAACTGACTACCGAT
1 TGCGCCACTGACTACCGAT
**
70478773 T--G-CACTG-CTTGCGAGT
1 TGCGCCACTGACTACCGA-T
70478789 TGCGCCACTGACTACCGAT
1 TGCGCCACTGACTACCGAT
70478808 TGC
1 TGC
70478811 AAGGGCTGAG
Statistics
Matches: 28, Mismatches: 5, Indels: 10
0.65 0.12 0.23
Matches are distributed among these distances:
15 5 0.18
16 6 0.21
17 1 0.04
18 1 0.04
19 10 0.36
20 5 0.18
ACGTcount: A:0.19, C:0.32, G:0.25, T:0.25
Consensus pattern (19 bp):
TGCGCCACTGACTACCGAT
Found at i:70480580 original size:21 final size:21
Alignment explanation
Indices: 70480554--70480593 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
70480544 TATTTAAATT
70480554 TTTTGT-TAGATTTTATTAAAA
1 TTTTGTATAGATTTT-TTAAAA
*
70480575 TTTTGTATTGATTTTTTAA
1 TTTTGTATAGATTTTTTAA
70480594 TGGTTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (21 bp):
TTTTGTATAGATTTTTTAAAA
Found at i:70485722 original size:40 final size:40
Alignment explanation
Indices: 70485663--70485870 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
70485653 CAATTGAATG
* * * *
70485663 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
70485703 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
70485743 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
70485783 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
70485823 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
70485863 ATATCCGG
1 ATATCCGG
70485871 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:70485801 original size:80 final size:80
Alignment explanation
Indices: 70485665--70485870 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
70485655 ATTGAATGAT
* * ** * * *
70485665 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
70485729 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
70485745 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
70485810 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
70485825 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
70485871 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:70488442 original size:51 final size:46
Alignment explanation
Indices: 70488346--70488613 Score: 188
Period size: 46 Copynumber: 5.6 Consensus size: 46
70488336 TATCTAAAGT
*
70488346 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATTTCATAGC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTGACTATCATTTCATAGC
70488394 CGATGCATGTCCCAAACATGTCTTACACTGGCGTAACTATCATTTCATAGC
1 CGATGCATGTCCCAAACATGTCTTACACT---G--ACTATCATTTCATAGC
*** *
70488445 CGATGCATGTCCCAAACATGTCTTACACT-AGCT-TACGCCTCGA-GGC
1 CGATGCATGTCCCAAACATGTCTTACACTGA-CTAT-CATTTC-ATAGC
* ** * *
70488491 CGATGCATGTCCCAAGCATGTCTTACACT-AGCCCTCGTCTCA-ATGC
1 CGATGCATGTCCCAAACATGTCTTACACTGA-CTATCATTTCATA-GC
* * * * * * *
70488537 CGATGCCATGTTCCAGACATGATCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAAACATG-TCTTACACTGACTATCAT-TTCATAGC
* *
70488585 CAATGCATGTCCCACACATGTCTTACACT
1 CGATGCATGTCCCAAACATGTCTTACACT
70488614 AGCTCACACA
Statistics
Matches: 184, Mismatches: 21, Indels: 32
0.78 0.09 0.14
Matches are distributed among these distances:
45 3 0.02
46 69 0.38
47 40 0.22
48 25 0.14
49 2 0.01
51 45 0.24
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAAACATGTCTTACACTGACTATCATTTCATAGC
Found at i:70503438 original size:20 final size:19
Alignment explanation
Indices: 70503415--70503473 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
70503405 TTAAATTCTA
70503415 AAAGGTAAATACAAATAAAT
1 AAAGGTAAATA-AAATAAAT
* *
70503435 AAAGATAATTAAAGATAAAT
1 AAAGGTAAATAAA-ATAAAT
*
70503455 AAGGGTAAATAAAAATAAA
1 AAAGGTAAAT-AAAATAAA
70503474 AGCTAAAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
19 2 0.06
20 27 0.84
21 3 0.09
ACGTcount: A:0.66, C:0.02, G:0.12, T:0.20
Consensus pattern (19 bp):
AAAGGTAAATAAAATAAAT
Found at i:70503442 original size:10 final size:10
Alignment explanation
Indices: 70503415--70503473 Score: 57
Period size: 10 Copynumber: 5.9 Consensus size: 10
70503405 TTAAATTCTA
*
70503415 AAAGGTAAAT
1 AAAGATAAAT
70503425 ACAA-ATAAAT
1 A-AAGATAAAT
*
70503435 AAAGATAATT
1 AAAGATAAAT
70503445 AAAGATAAAT
1 AAAGATAAAT
* *
70503455 AAGGGTAAAT
1 AAAGATAAAT
*
70503465 AAAAATAAA
1 AAAGATAAA
70503474 AGCTAAAATT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
9 2 0.05
10 35 0.90
11 2 0.05
ACGTcount: A:0.66, C:0.02, G:0.12, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:70504002 original size:101 final size:101
Alignment explanation
Indices: 70503817--70504056 Score: 345
Period size: 101 Copynumber: 2.4 Consensus size: 101
70503807 AATTCATCCT
* * * * * ** * * *
70503817 TTACATTCGTAGTGCCATAACCCAGTAATGGTCTTATCGTCAGAATGTCATAGCCTAGCTATGGT
1 TTACGTTCATAGTGTCATAACCCAGTTATGGTCTTATCATCAGAATACCATAACCCAACTATGGT
*
70503882 CTTACATATAAACACTGCCATGGTCCAACCATGGTC
66 CTTACATAAAAACACTGCCATGGTCCAACCATGGTC
* *
70503918 TTACGTTCATAGTGTCATAACCCAGTTATGGTCTTATCATTAGAATACCATAACCCAACTTTGGT
1 TTACGTTCATAGTGTCATAACCCAGTTATGGTCTTATCATCAGAATACCATAACCCAACTATGGT
* *
70503983 CTTACATAAAAACATTGCCATGGTCTAACCATGGTC
66 CTTACATAAAAACACTGCCATGGTCCAACCATGGTC
70504019 TTACGTTCATAGTGTCATAACCCAGTTATGGTCTTATC
1 TTACGTTCATAGTGTCATAACCCAGTTATGGTCTTATC
70504057 CGTCAATTCA
Statistics
Matches: 124, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 124 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (101 bp):
TTACGTTCATAGTGTCATAACCCAGTTATGGTCTTATCATCAGAATACCATAACCCAACTATGGT
CTTACATAAAAACACTGCCATGGTCCAACCATGGTC
Found at i:70506018 original size:16 final size:19
Alignment explanation
Indices: 70506007--70506042 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70505997 AAATAAAATA
70506007 CTAATAAAATAATATATAT
1 CTAATAAAATAATATATAT
*
70506026 CTAATTAAATAAT-TATA
1 CTAATAAAATAATATATA
70506043 AAATATCATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (19 bp):
CTAATAAAATAATATATAT
Found at i:70506024 original size:30 final size:30
Alignment explanation
Indices: 70505989--70506047 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
70505979 TTTCTTTCCT
*
70505989 TATATA-CTAAATAAAATACTAATAAAATAA
1 TATATATCT-AATAAAATAATAATAAAATAA
* *
70506019 TATATATCTAATTAAATAATTATAAAATA
1 TATATATCTAATAAAATAATAATAAAATA
70506048 TCATCAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (30 bp):
TATATATCTAATAAAATAATAATAAAATAA
Found at i:70510804 original size:2 final size:2
Alignment explanation
Indices: 70510797--70510839 Score: 77
Period size: 2 Copynumber: 21.0 Consensus size: 2
70510787 GAGTTTTCAA
70510797 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
70510840 TTATGTTCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 38 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:70510844 original size:9 final size:9
Alignment explanation
Indices: 70510797--70510844 Score: 59
Period size: 8 Copynumber: 5.8 Consensus size: 9
70510787 GAGTTTTCAA
70510797 ATATAT-AT
1 ATATATGAT
70510805 ATATAT-AT
1 ATATATGAT
70510813 ATATAT-AT
1 ATATATGAT
70510821 ATATAT-AT
1 ATATATGAT
70510829 ATATATGAT
1 ATATATGAT
*
70510838 ATTTATG
1 ATATATG
70510845 TTCTTTAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
8 30 0.79
9 8 0.21
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (9 bp):
ATATATGAT
Found at i:70514254 original size:30 final size:29
Alignment explanation
Indices: 70514220--70514308 Score: 112
Period size: 26 Copynumber: 3.1 Consensus size: 29
70514210 ATAAATTTGG
70514220 ATAATTTTTTAATTATTTAAATAATGAAAA
1 ATAATTTTTT-ATTATTTAAATAATGAAAA
*
70514250 ATAATGTTATTTATTATTTAAATTAT-AAAA
1 ATAAT-TT-TTTATTATTTAAATAATGAAAA
*
70514280 AT-A-TATTTATTATTTAAATAATGAAAA
1 ATAATTTTTTATTATTTAAATAATGAAAA
70514307 AT
1 AT
70514309 TTTAGAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
26 16 0.30
27 7 0.13
29 1 0.02
30 11 0.21
31 15 0.28
32 3 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.47
Consensus pattern (29 bp):
ATAATTTTTTATTATTTAAATAATGAAAA
Found at i:70523636 original size:27 final size:27
Alignment explanation
Indices: 70523602--70523668 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
70523592 TGGATAAGTT
*
70523602 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAACACCCCTGTAAG
*
70523629 GTAGAATTATCGAAACACCCCTGTAAG
1 GTAGAATTACCGAAACACCCCTGTAAG
70523656 GTAGAATTACCGA
1 GTAGAATTACCGA
70523669 GATATCCTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.22
Consensus pattern (27 bp):
GTAGAATTACCGAAACACCCCTGTAAG
Found at i:70526871 original size:122 final size:120
Alignment explanation
Indices: 70526656--70526879 Score: 360
Period size: 122 Copynumber: 1.9 Consensus size: 120
70526646 CCAAAATAAC
* * * *
70526656 CATGAGAATGAGAATAGTAATGTAATGGGTATGAGGTTTTCCTAATCTCTATTTAACACGGAATG
1 CATGAGAATGAAAATAGTAATGTAATGGGTATGAGGTTTCCCTAATCTCAATTTAACACGAAATG
70526721 TATGATAACTAACCTAAGAATGAAAATTAAATGATAGGCATTGGCATGGTAATAG
66 TATGATAACTAACCTAAGAATGAAAATTAAATGATAGGCATTGGCATGGTAATAG
*
70526776 CATGAGAAT-AAACATAGTAATGTCATGGGTATGAGGTTTCCCTAATAACTCAATTTAACACGAA
1 CATGAGAATGAAA-ATAGTAATGTAATGGGTATGAGGTTTCCCTAAT--CTCAATTTAACACGAA
*
70526840 ATGTATGATAACTAACCTAAGAATGCAAATTAAATGATAG
63 ATGTATGATAACTAACCTAAGAATGAAAATTAAATGATAG
70526880 AATAATGAGG
Statistics
Matches: 95, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
119 2 0.02
120 40 0.42
122 53 0.56
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (120 bp):
CATGAGAATGAAAATAGTAATGTAATGGGTATGAGGTTTCCCTAATCTCAATTTAACACGAAATG
TATGATAACTAACCTAAGAATGAAAATTAAATGATAGGCATTGGCATGGTAATAG
Found at i:70527272 original size:15 final size:13
Alignment explanation
Indices: 70527244--70527268 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70527234 TGTGGGTGCA
70527244 CACGGCCGTGTCG
1 CACGGCCGTGTCG
70527257 CACGGCCGTGTC
1 CACGGCCGTGTC
70527269 TCGCTTGCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.36, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTCG
Found at i:70538074 original size:5 final size:5
Alignment explanation
Indices: 70538064--70538088 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
70538054 TTTTTCTTGC
70538064 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
70538089 TACTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:70542908 original size:28 final size:27
Alignment explanation
Indices: 70542845--70542914 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
70542835 ATAGTGAGTC
*
70542845 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
70542872 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
70542900 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70542915 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:70550850 original size:28 final size:27
Alignment explanation
Indices: 70550787--70550856 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
70550777 ATAGTGAGTC
*
70550787 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
70550814 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
70550842 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70550857 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:70565330 original size:40 final size:39
Alignment explanation
Indices: 70565221--70565354 Score: 207
Period size: 41 Copynumber: 3.4 Consensus size: 39
70565211 GCTAATGATG
70565221 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAAGTTACTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTAA
70565260 TCCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
70565300 TCCGGGTTAAGTCCCGAAGGCATTTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTT-GTGCGAGTTACT-AA
*
70565341 TCCGGGTTAAGTCC
1 TCCGGGCTAAGTCC
70565355 GGGCTATGTC
Statistics
Matches: 90, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
39 25 0.28
40 32 0.36
41 33 0.37
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:70574387 original size:40 final size:40
Alignment explanation
Indices: 70574342--70574508 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
70574332 CGGAATATAA
70574342 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
70574382 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
70574422 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
70574462 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70574501 CCGGATAT
1 CCGGATAT
70574509 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70574492 original size:80 final size:79
Alignment explanation
Indices: 70574342--70574508 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
70574332 CGGAATATAA
* *
70574342 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
70574407 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
70574422 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
70574484 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
70574501 CCGGATAT
1 CCGGATAT
70574509 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:70575356 original size:17 final size:19
Alignment explanation
Indices: 70575333--70575378 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
70575323 AAGAAGCATG
70575333 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
70575351 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
70575369 AATCATGCTC
1 AATCATGCTC
70575379 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:70579458 original size:42 final size:41
Alignment explanation
Indices: 70579368--70579513 Score: 150
Period size: 43 Copynumber: 3.4 Consensus size: 41
70579358 GTCCCAGGCG
* * * *
70579368 TGGTCTTACATGTAATCAAATATCGATGCCACTGTACCAGATA
1 TGGTCTTACACGAAATCAAATA-CGATGCCAATGT-CCAGACA
* *
70579411 GGGTCTTAGACGAAATCAAATACGATGCCAATGTCCTAGACA
1 TGGTCTTACACGAAATCAAATACGATGCCAATGTCC-AGACA
* *
70579453 TGGTCTTACACGTAATCTCAAAT-CGATGCCAATGTCCCAGACG
1 TGGTCTTACACG-AA-ATCAAATACGATGCCAATGT-CCAGACA
*
70579496 TGGTCTTACACAAAATCA
1 TGGTCTTACACGAAATCA
70579514 CATATTGAAA
Statistics
Matches: 87, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
41 5 0.06
42 27 0.31
43 47 0.54
44 8 0.09
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (41 bp):
TGGTCTTACACGAAATCAAATACGATGCCAATGTCCAGACA
Found at i:70587390 original size:40 final size:40
Alignment explanation
Indices: 70587306--70587490 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
70587296 TCGAATGATG
* *
70587306 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
70587345 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
70587386 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
70587425 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
70587464 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
70587491 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:70587445 original size:79 final size:81
Alignment explanation
Indices: 70587306--70587488 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
70587296 TCGAATGATG
* *
70587306 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
70587370 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
70587385 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
70587447 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
70587465 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70587489 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:70587512 original size:79 final size:79
Alignment explanation
Indices: 70587307--70587513 Score: 228
Period size: 79 Copynumber: 2.6 Consensus size: 79
70587297 CGAATGATGT
* *
70587307 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
70587370 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* * *
70587387 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCTGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATC-CGGTTAAGAT-CCGAAGGCATT
70587449 TGTGCGAGTTACT-ATAA
63 TGTGCGAGTTACTAAT-A
* **
70587466 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAA
70587514 ATTCCAAAGG
Statistics
Matches: 107, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
78 3 0.03
79 62 0.58
80 42 0.39
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:70589404 original size:10 final size:10
Alignment explanation
Indices: 70589389--70589432 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
70589379 TTATATCCAA
70589389 ACCAAAACAT
1 ACCAAAACAT
*
70589399 ACCAAATCAT
1 ACCAAAACAT
70589409 AAGCCAAAATCAT
1 -A-CCAAAA-CAT
70589422 ACCAAAACAT
1 ACCAAAACAT
70589432 A
1 A
70589433 TGATTCATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
10 13 0.45
11 7 0.24
12 6 0.21
13 3 0.10
ACGTcount: A:0.57, C:0.27, G:0.02, T:0.14
Consensus pattern (10 bp):
ACCAAAACAT
Found at i:70589424 original size:23 final size:22
Alignment explanation
Indices: 70589390--70589432 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
70589380 TATATCCAAA
*
70589390 CCAAAACATACCAAATCATAAG
1 CCAAAACATACCAAAACATAAG
70589412 CCAAAATCATACCAAAACATA
1 CCAAAA-CATACCAAAACATA
70589433 TGATTCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.56, C:0.28, G:0.02, T:0.14
Consensus pattern (22 bp):
CCAAAACATACCAAAACATAAG
Found at i:70590217 original size:43 final size:44
Alignment explanation
Indices: 70590151--70590307 Score: 184
Period size: 43 Copynumber: 3.7 Consensus size: 44
70590141 AGCTTGTACA
* * *
70590151 ATGCCAAC-GTCCCCGACGTGGTCTTACATGTACTCAAATATCG
1 ATGCCAACTGTCCCAGACATGGTCTTACACGTACTCAAATATCG
* * *
70590194 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCAAATA-CG
1 ATGCCAACTGTCCCAGACATGGTCTTACACGTACTCAAATATCG
*
70590236 ATGCCGA-TGTCCCAGACATGGTCTTACACGTAATCTC-AA-ATCG
1 ATGCCAACTGTCCCAGACATGGTCTTACACGT-A-CTCAAATATCG
70590279 ATGCCAAC-GTCCCAGACATGGTCTTACAC
1 ATGCCAACTGTCCCAGACATGGTCTTACAC
70590308 AAAATCATAT
Statistics
Matches: 98, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
42 32 0.33
43 64 0.65
44 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (44 bp):
ATGCCAACTGTCCCAGACATGGTCTTACACGTACTCAAATATCG
Found at i:70590294 original size:85 final size:85
Alignment explanation
Indices: 70590159--70590314 Score: 219
Period size: 85 Copynumber: 1.8 Consensus size: 85
70590149 CAATGCCAAC
* * * *
70590159 GTCCCCGACGTGGTCTTACATGTACTCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACG
1 GTCCCAGACATGGTCTTACACGTACTCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACA
70590224 AAATCAAATACGATGCCGAT
66 AAATCAAATACGATGCCGAT
*
70590244 GTCCCAGACATGGTCTTACACGTAATCTC-AA-ATCGATGCCAAC-GTCCCAGACATGGTCTTAC
1 GTCCCAGACATGGTCTTACACGT-A-CTCAAATATCGATGCC-ACTGTCCCAGACAGGGTCTTAC
70590306 ACAAAATCA
63 ACAAAATCA
70590315 TATATCAAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
85 55 0.87
86 5 0.08
87 3 0.05
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACACGTACTCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACA
AAATCAAATACGATGCCGAT
Done.