Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 238 of 378
Found at i:70593545 original size:18 final size:17
Alignment explanation
Indices: 70593524--70593563 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
70593514 AAATATAACG
* *
70593524 ATATATGAAAATAATACT
1 ATATAAGAAAAGAATA-T
70593542 ATATAAGAAAAGAATAT
1 ATATAAGAAAAGAATAT
70593559 ATATA
1 ATATA
70593564 CTCCTATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (17 bp):
ATATAAGAAAAGAATAT
Found at i:70593769 original size:11 final size:11
Alignment explanation
Indices: 70593753--70593782 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
70593743 TAACATTAAG
70593753 AATATATATAT
1 AATATATATAT
*
70593764 AATATAAATAT
1 AATATATATAT
70593775 AATATATA
1 AATATATA
70593783 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:70594228 original size:13 final size:13
Alignment explanation
Indices: 70594186--70594234 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
70594176 AAAAATGTAA
70594186 TTTT-TTATATTT
1 TTTTATTATATTT
* *
70594198 GTTTTGTATATATAT
1 -TTTTAT-TATATTT
70594213 TTTTATTATATTT
1 TTTTATTATATTT
70594226 TTTTATTAT
1 TTTTATTAT
70594235 GATGTATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 19 0.61
14 6 0.19
15 6 0.19
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (13 bp):
TTTTATTATATTT
Found at i:70594304 original size:18 final size:18
Alignment explanation
Indices: 70594282--70594322 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
70594272 AAAAAAAAAA
*
70594282 ATAAAAATAA-AAATAAG
1 ATAAAAATAATAAAGAAG
70594299 AGT-AAAATAATAAAGAAG
1 A-TAAAAATAATAAAGAAG
70594317 ATAAAA
1 ATAAAA
70594323 TCACCTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (18 bp):
ATAAAAATAATAAAGAAG
Found at i:70594305 original size:17 final size:17
Alignment explanation
Indices: 70594285--70594323 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
70594275 AAAAAAAATA
*
70594285 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
70594302 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
70594319 AAAAT
1 AAAAT
70594324 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:70594543 original size:26 final size:25
Alignment explanation
Indices: 70594514--70594576 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 25
70594504 GTTAGGTGGC
*
70594514 TAGGTTTTTTTATCTTTTTTTTTGGG-
1 TAGGTTTTTTT-T-TTCTTTTTTGGGT
70594540 TAGGTTTTTCTTTTTCTTTTTTGGGT
1 TAGGTTTTT-TTTTTCTTTTTTGGGT
70594566 TAGGTTTTTTT
1 TAGGTTTTTTT
70594577 GGGGGGCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
25 13 0.38
26 19 0.56
27 2 0.06
ACGTcount: A:0.06, C:0.05, G:0.19, T:0.70
Consensus pattern (25 bp):
TAGGTTTTTTTTTTCTTTTTTGGGT
Found at i:70607282 original size:40 final size:40
Alignment explanation
Indices: 70607238--70607349 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
70607228 GTTATAATAG
* *
70607238 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGAA
* **
70607278 CTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGAA
*
70607318 CTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 C-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
70607350 CATCATTCGA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
39 3 0.05
40 48 0.77
41 11 0.18
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGAA
Found at i:70613700 original size:38 final size:39
Alignment explanation
Indices: 70613587--70613729 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
70613577 CCGCACAAAG
*
70613587 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
70613627 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
70613666 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
70613704 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
70613730 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:70613708 original size:77 final size:79
Alignment explanation
Indices: 70613547--70613728 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
70613537 TCGTTCAAAC
* * **
70613547 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
70613612 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
70613627 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
70613690 CAATTTGCACAATT
66 CAATTTGCACAATT
70613704 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
70613729 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:70618182 original size:39 final size:39
Alignment explanation
Indices: 70618098--70618250 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
70618088 TATGGTAACC
** * *
70618098 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
70618138 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
70618177 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
70618216 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
70618251 TCGAACATTC
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 86 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:70618224 original size:78 final size:79
Alignment explanation
Indices: 70618067--70618249 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
70618057 TCGTTCAAAC
* * **
70618067 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
70618132 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** * *
70618147 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
70618211 CAATTTGCACAATT
66 CAATTTGCACAATT
70618225 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
70618250 CTCGAACATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:70620997 original size:18 final size:18
Alignment explanation
Indices: 70620974--70621009 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
70620964 AGGGGTCAGG
70620974 GCAAGTTCTTTCTCCCTT
1 GCAAGTTCTTTCTCCCTT
*
70620992 GCAAGTTTTTTCTCCCTT
1 GCAAGTTCTTTCTCCCTT
70621010 TCCATCATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.31, G:0.11, T:0.47
Consensus pattern (18 bp):
GCAAGTTCTTTCTCCCTT
Found at i:70630159 original size:24 final size:24
Alignment explanation
Indices: 70630114--70630159 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
70630104 TGCATTATGG
**
70630114 AAGGAAAATAAAGAAATGAAAAAA
1 AAGGAAAATAAAGAAAAAAAAAAA
* *
70630138 AAGGAAAATGATGAAAAAAAAA
1 AAGGAAAATAAAGAAAAAAAAA
70630160 GAGTGTGGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (24 bp):
AAGGAAAATAAAGAAAAAAAAAAA
Found at i:70631928 original size:40 final size:39
Alignment explanation
Indices: 70631884--70632065 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
70631874 GTTCAAAACA
* * ** * *
70631884 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
70631924 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
70631964 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
70632003 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
70632042 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
70632066 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:70631995 original size:39 final size:39
Alignment explanation
Indices: 70631914--70632066 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
70631904 TATGGTAACC
* *
70631914 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
70631954 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
70631993 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
70632032 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
70632067 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:70640000 original size:40 final size:39
Alignment explanation
Indices: 70639956--70640137 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
70639946 GTTCAAAACA
* * ** * *
70639956 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
70639996 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
70640036 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
70640075 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
70640114 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
70640138 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:70640067 original size:39 final size:39
Alignment explanation
Indices: 70639986--70640138 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
70639976 TATGGTAACC
* *
70639986 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
70640026 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
70640065 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
70640104 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
70640139 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:70642231 original size:40 final size:40
Alignment explanation
Indices: 70642161--70642418 Score: 324
Period size: 40 Copynumber: 6.5 Consensus size: 40
70642151 AAGCCAAGTA
* * * * *
70642161 CCTTCGGGATTTA-ACCGGGTATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
70642200 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** * *
70642240 CCTTTAGAACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70642280 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
70642320 CCTTCGGGACTTAGCTCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** *
70642360 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAACGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
70642400 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70642419 TTATCATCCA
Statistics
Matches: 192, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
39 13 0.07
40 179 0.93
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70650876 original size:34 final size:34
Alignment explanation
Indices: 70650818--70650902 Score: 100
Period size: 34 Copynumber: 2.5 Consensus size: 34
70650808 GTTTCGGTTA
* * *
70650818 GGGCCTTAGCCCCTTTTCAGTAACAGTA-TCAGTCT
1 GGGCCTTAG-CCCATTTCAATAACAG-AGGCAGTCT
* *
70650853 GGGCCTGAGCCCATTTCAATAACAGAGGCTGTCT
1 GGGCCTTAGCCCATTTCAATAACAGAGGCAGTCT
70650887 GGGCCTTAGCCCATTT
1 GGGCCTTAGCCCATTT
70650903 TAGTATAGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
33 1 0.02
34 34 0.79
35 8 0.19
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (34 bp):
GGGCCTTAGCCCATTTCAATAACAGAGGCAGTCT
Found at i:70653173 original size:39 final size:41
Alignment explanation
Indices: 70653073--70653255 Score: 182
Period size: 40 Copynumber: 4.6 Consensus size: 41
70653063 TCGAATGATG
* * * *
70653073 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAAGTTACTAAA
* * *
70653113 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAA-TTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAAGTTACTAAA
*
70653153 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAAGTTACTAAA
* * *
70653192 CCCGGGTTAAGTCCCGAAGGCATTCGTGCG-AGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAAGTTACTA-AA
**
70653233 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70653256 TGAGCGAGTC
Statistics
Matches: 118, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 74 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAAGTTACTAAA
Found at i:70653213 original size:79 final size:82
Alignment explanation
Indices: 70653073--70653257 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
70653063 TCGAATGATG
* * *
70653073 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
70653137 CGTGCGAATTAATA-AA
66 CGTGCGAATCAATATAA
* **
70653153 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
* *
70653215 TCGTGCGAGTCACTATAA
65 TCGTGCGAATCAATATAA
**
70653233 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70653258 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 34 0.38
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAATCAATATAA
Found at i:70653288 original size:79 final size:79
Alignment explanation
Indices: 70653073--70653290 Score: 174
Period size: 79 Copynumber: 2.7 Consensus size: 79
70653063 TCGAATGATG
* * * * ** *
70653073 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
70653136 TCGTGCGAATTAATAAA
63 TCGTGCGAATCAATAAA
* * * *
70653153 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
* *
70653218 TGCGAGTCACTATAA
66 TGCGAATCAATA-AA
** * ** * *
70653233 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
70653291 TACGTGATTC
Statistics
Matches: 112, Mismatches: 22, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
79 68 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAATCAATAAA
Found at i:70661202 original size:49 final size:48
Alignment explanation
Indices: 70661076--70661251 Score: 248
Period size: 49 Copynumber: 3.7 Consensus size: 48
70661066 CCCTTCGGAA
* * * * *
70661076 CTTATCACAT-TTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70661123 CCTATCACATA-TATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70661170 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
70661219 CTTATCACATATATATACACTTTCACATTCATC
1 CTTATCACATAT-TATACACTTTCACATTCATC
70661252 GCATAGAATC
Statistics
Matches: 114, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
47 49 0.43
49 65 0.57
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (48 bp):
CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70669059 original size:47 final size:47
Alignment explanation
Indices: 70668946--70669425 Score: 725
Period size: 47 Copynumber: 10.3 Consensus size: 47
70668936 GATGTACAAG
* * *
70668946 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
70668992 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
70669039 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
70669086 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
70669133 GTGTATATATGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
70669179 GTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * * *
70669226 GTGTATATATGAGATAAGACCTAATGACCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
70669273 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
70669320 GTGTATATATGTGATAA-GCCGAGTGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * * * *
70669366 -TGTACATATGAGATAAGACCTAATGACCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
70669412 GTGTATATATGTGA
1 GTGTATATATGTGA
70669426 NGGGTTGTAA
Statistics
Matches: 393, Mismatches: 37, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
45 14 0.04
46 137 0.35
47 242 0.62
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:70669207 original size:140 final size:141
Alignment explanation
Indices: 70668946--70669425 Score: 770
Period size: 140 Copynumber: 3.4 Consensus size: 141
70668936 GATGTACAAG
* * * *
70668946 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATAAG
1 GTGTATATATGAGATAAGACCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * * *
70669010 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGA
66 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGA
70669075 TGAATGTGAAA
131 TGAATGTGAAA
* * * * *
70669086 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTATATATGAGATAAGACCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
70669151 G-CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGA
66 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGA
70669215 TGAATGTGAAA
131 TGAATGTGAAA
* *
70669226 GTGTATATATGAGATAAGACCTAATGACCGATGTGATGGATGTGAAGGTGTATATATGTGATAAG
1 GTGTATATATGAGATAAGACCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
70669291 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA-GCCGAGTGGCCAATGTGA
66 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGA
70669355 TGAATGTGAAA
131 TGAATGTGAAA
* * *
70669366 -TGTACATATGAGATAAGACCTAATGACCGATGTGATGGATGTGAAGGTGTATATATGTGA
1 GTGTATATATGAGATAAGACCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGA
70669426 NGGGTTGTAA
Statistics
Matches: 323, Mismatches: 15, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
139 59 0.18
140 199 0.62
141 65 0.20
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
GTGTATATATGAGATAAGACCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGA
TGAATGTGAAA
Found at i:70669271 original size:187 final size:187
Alignment explanation
Indices: 70668946--70669422 Score: 751
Period size: 187 Copynumber: 2.6 Consensus size: 187
70668936 GATGTACAAG
* * *
70668946 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * * *
70669010 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGA
65 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGACCGATGTGA
70669075 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
130 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
70669133 GTGTATATATGTGATAAGGCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
1 GTGTATATATGTGATAAGGCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
*
70669198 CCGAGTGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGACCGATGTGAT
66 CCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGACCGATGTGAT
* *
70669263 GGATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
131 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * *
70669320 GTGTATATATGTGATAAGCCGAGTGGCCAATGTGATGAATGTGAAA-TGTACATATGAGATAAGA
1 GTGTATATATGTGATAAGGCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* * * * *
70669384 CCTAATGACCGATGTGATGGATGTGAAGGTGTATATATG
66 CCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATG
70669423 TGANGGGTTG
Statistics
Matches: 268, Mismatches: 21, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
186 70 0.26
187 198 0.74
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (187 bp):
GTGTATATATGTGATAAGGCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGACCGATGTGAT
GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:70676830 original size:29 final size:29
Alignment explanation
Indices: 70676695--70676829 Score: 216
Period size: 29 Copynumber: 4.7 Consensus size: 29
70676685 GCTTGGAAGG
70676695 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
70676724 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
70676753 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
70676782 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
70676811 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
70676830 GATCGTTTAT
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:70678755 original size:40 final size:41
Alignment explanation
Indices: 70678711--70678936 Score: 279
Period size: 40 Copynumber: 5.7 Consensus size: 41
70678701 GCTACTCATT
* * *
70678711 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
*
70678751 CAAATGCCTTCGGGA-CTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
70678791 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
70678831 CAAATGCCTT-TGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
70678871 CAATTGCCTTC-GGATCTTAGTCCAGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
70678912 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
70678937 CATCATTCGA
Statistics
Matches: 168, Mismatches: 12, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
39 3 0.02
40 153 0.91
41 12 0.07
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:70691981 original size:38 final size:38
Alignment explanation
Indices: 70691939--70692013 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
70691929 AGGTGCCATC
70691939 TTCAAACTCATCAAATAACTATTATTATAAGAAAATTT
1 TTCAAACTCATCAAATAACTATTATTATAAGAAAATTT
* *
70691977 TTCAAACTCGTCAGATAACTATTATTATAAGAAAATT
1 TTCAAACTCATCAAATAACTATTATTATAAGAAAATT
70692014 CTACTAATGG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.45, C:0.13, G:0.05, T:0.36
Consensus pattern (38 bp):
TTCAAACTCATCAAATAACTATTATTATAAGAAAATTT
Found at i:70698118 original size:13 final size:13
Alignment explanation
Indices: 70698096--70698130 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
70698086 CCTGCTTCCA
*
70698096 CACGGTCGTATCG
1 CACGGCCGTATCG
70698109 CACGGCCGTATCG
1 CACGGCCGTATCG
70698122 CACGGCCGT
1 CACGGCCGT
70698131 GTTTCTTCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.14, C:0.37, G:0.31, T:0.17
Consensus pattern (13 bp):
CACGGCCGTATCG
Found at i:70706270 original size:461 final size:461
Alignment explanation
Indices: 70705408--70706331 Score: 1776
Period size: 461 Copynumber: 2.0 Consensus size: 461
70705398 GATCCATCTT
* * *
70705408 TCTTTTTCACGAATAATACCGGAGCGCCCCACGGTGAAAAGCTAGGTCTCACAAAACCCTTGTCG
1 TCTTTTTCACAAATAATACCGGAACGCCCCACGATGAAAAGCTAGGTCTCACAAAACCCTTGTCG
70705473 GTTAATTCTTGCAACTGTGACTTCAGTTCTTTCAACTTAGTCGGGGACATATTATATGGAGCAAT
66 GTTAATTCTTGCAACTGTGACTTCAGTTCTTTCAACTTAGTCGGGGACATATTATATGGAGCAAT
70705538 CGAGATAGGTGCTGTCCCTGGCATTACTTCAATACCAAACTCCACTTCTCTAATTGGAGGTAAAC
131 CGAGATAGGTGCTGTCCCTGGCATTACTTCAATACCAAACTCCACTTCTCTAATTGGAGGTAAAC
70705603 CTGGCAATTCTTCCGGGAATTCATCTAGATACTCACATACAACAAGCACTGATTCAATATTCAAT
196 CTGGCAATTCTTCCGGGAATTCATCTAGATACTCACATACAACAAGCACTGATTCAATATTCAAT
70705668 TCAGACTCTTTTGTATTAAATATATAAGACAAATAAGCTTTACACCCTCTTCTAATACATTTCTG
261 TCAGACTCTTTTGTATTAAATATATAAGACAAATAAGCTTTACACCCTCTTCTAATACATTTCTG
70705733 AACCAACATTGAAGAAATTACGATTGGCAATTTATCTGGCTCATCTGATTCAACCCGAAGAATTT
326 AACCAACATTGAAGAAATTACGATTGGCAATTTATCTGGCTCATCTGATTCAACCCGAAGAATTT
70705798 CACCATTTTCACACTTCAATTCAATGACTTTCTATCTAAAATTCACTATAGCATCATGAAATGTC
391 CACCATTTTCACACTTCAATTCAATGACTTTCTATCTAAAATTCACTATAGCATCATGAAATGTC
70705863 AACCAA
456 AACCAA
* *
70705869 TCTTTTTCACAAATAATACCGGAATGCCCCACGATGAAAAGCTCGGTCTCACAAAACCCTTGTCG
1 TCTTTTTCACAAATAATACCGGAACGCCCCACGATGAAAAGCTAGGTCTCACAAAACCCTTGTCG
*
70705934 GTTAATTCTTGCAACTGTGACTTCAGTTGTTTCAACTTAGTCGGGGACATATTATATGGAGCAAT
66 GTTAATTCTTGCAACTGTGACTTCAGTTCTTTCAACTTAGTCGGGGACATATTATATGGAGCAAT
70705999 CGAGATAGGTGCTGTCCCTGGCATTACTTCAATACCAAACTCCACTTCTCTAATTGGAGGTAAAC
131 CGAGATAGGTGCTGTCCCTGGCATTACTTCAATACCAAACTCCACTTCTCTAATTGGAGGTAAAC
70706064 CTGGCAATTCTTCCGGGAATTCATCTAGATACTCACATACAACAAGCACTGATTCAATATTCAAT
196 CTGGCAATTCTTCCGGGAATTCATCTAGATACTCACATACAACAAGCACTGATTCAATATTCAAT
*
70706129 TCAGACTCTTTTGTATTAAATATATAAGACAAATAAGCTTTACATCCTCTTCTAATACATTTCTG
261 TCAGACTCTTTTGTATTAAATATATAAGACAAATAAGCTTTACACCCTCTTCTAATACATTTCTG
70706194 AACCAACATTGAAGAAATTACGATTGGCAATTTATCTGGCTCATCTGATTCAACCCGAAGAATTT
326 AACCAACATTGAAGAAATTACGATTGGCAATTTATCTGGCTCATCTGATTCAACCCGAAGAATTT
*
70706259 CACCATTTTCACACTTCAATTCAATGACTTTCTATCTACAATTCACTATAGCATCATGAAATGTC
391 CACCATTTTCACACTTCAATTCAATGACTTTCTATCTAAAATTCACTATAGCATCATGAAATGTC
70706324 AACCAA
456 AACCAA
70706330 TC
1 TC
70706332 CATACCCAAT
Statistics
Matches: 455, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
461 455 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (461 bp):
TCTTTTTCACAAATAATACCGGAACGCCCCACGATGAAAAGCTAGGTCTCACAAAACCCTTGTCG
GTTAATTCTTGCAACTGTGACTTCAGTTCTTTCAACTTAGTCGGGGACATATTATATGGAGCAAT
CGAGATAGGTGCTGTCCCTGGCATTACTTCAATACCAAACTCCACTTCTCTAATTGGAGGTAAAC
CTGGCAATTCTTCCGGGAATTCATCTAGATACTCACATACAACAAGCACTGATTCAATATTCAAT
TCAGACTCTTTTGTATTAAATATATAAGACAAATAAGCTTTACACCCTCTTCTAATACATTTCTG
AACCAACATTGAAGAAATTACGATTGGCAATTTATCTGGCTCATCTGATTCAACCCGAAGAATTT
CACCATTTTCACACTTCAATTCAATGACTTTCTATCTAAAATTCACTATAGCATCATGAAATGTC
AACCAA
Found at i:70709830 original size:20 final size:20
Alignment explanation
Indices: 70709805--70709842 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70709795 GTCACATATA
70709805 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
70709825 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
70709843 TAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:70717676 original size:30 final size:30
Alignment explanation
Indices: 70717640--70717696 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
70717630 GATCTCTGAC
70717640 GACTCCCCAATTCGAGCAAGCTTCGGTGAT
1 GACTCCCCAATTCGAGCAAGCTTCGGTGAT
*
70717670 GACTCCCCAATTTGAGCAAGCTTCGGT
1 GACTCCCCAATTCGAGCAAGCTTCGGT
70717697 TACACTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (30 bp):
GACTCCCCAATTCGAGCAAGCTTCGGTGAT
Found at i:70722418 original size:6 final size:5
Alignment explanation
Indices: 70722389--70722443 Score: 60
Period size: 5 Copynumber: 10.8 Consensus size: 5
70722379 TATGTCTTTC
*
70722389 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AGAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT A-AAAT AAAAT AAAAT
70722435 AAAAT AAAA
1 AAAAT AAAA
70722444 GAATAAAAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
3 3 0.07
5 27 0.63
6 13 0.30
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:70724889 original size:40 final size:41
Alignment explanation
Indices: 70724845--70724953 Score: 127
Period size: 41 Copynumber: 2.7 Consensus size: 41
70724835 GAAATTATAA
* *
70724845 CCGGGTTAAGACCCGAAGGCAATTGTGC-TAGTGGC-TAC-AT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGCAGT--CATACTAT
*
70724885 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGCAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGCAGTCATACTAT
*
70724926 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCAATTGTGC
70724954 AAATCGTGAT
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
39 4 0.07
40 25 0.42
41 29 0.48
42 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (41 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGCAGTCATACTAT
Found at i:70724968 original size:81 final size:81
Alignment explanation
Indices: 70724845--70724994 Score: 185
Period size: 81 Copynumber: 1.9 Consensus size: 81
70724835 GAAATTATAA
* * * *
70724845 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
70724910 TGCGCAGTCATTCTAT
66 TGCGCAGTCATTCTAT
* * * * * * *
70724926 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTC
70724990 GTGCG
65 GTGCG
70724995 GGTTACCATA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
80 1 0.02
81 56 0.98
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (81 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGCAGTCATTCTAT
Found at i:70733088 original size:40 final size:39
Alignment explanation
Indices: 70732923--70733106 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
70732913 AAATTGAATG
* * *
70732923 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
70732963 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
70733003 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
70733043 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
70733082 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
70733107 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:70733131 original size:80 final size:81
Alignment explanation
Indices: 70732963--70733151 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
70732953 GCTGGAAATT
* * * *
70732963 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
70733028 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
70733044 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
70733107 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
70733123 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
70733152 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:70734658 original size:47 final size:47
Alignment explanation
Indices: 70734604--70734982 Score: 562
Period size: 47 Copynumber: 8.1 Consensus size: 47
70734594 TTAGGATTTT
** * *
70734604 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
70734651 ATGTGATGAATTTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
70734698 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
70734745 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
70734792 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
70734839 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
70734886 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
70734933 ATGTAATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
70734980 ATG
1 ATG
70734983 CGAAATATGT
Statistics
Matches: 304, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 301 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:70734798 original size:22 final size:22
Alignment explanation
Indices: 70734771--70734845 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
70734761 CATGCGTATG
70734771 TGTGATAAGGCCGAATGACCAA
1 TGTGATAAGGCCGAATGACCAA
* * *
70734793 TGTGATGAATG-TGAACATG-CATATA
1 TGTGAT-AAGGCCG-A-ATGAC-CA-A
70734818 TGTGATAAGGCCGAATGACCAA
1 TGTGATAAGGCCGAATGACCAA
70734840 TGTGAT
1 TGTGAT
70734846 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGACCAA
Found at i:70735012 original size:46 final size:46
Alignment explanation
Indices: 70734956--70735092 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
70734946 GGAAGTGTAT
70734956 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* **
70735002 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* * *
70735048 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATG
70735093 TGTATATATA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:70739969 original size:27 final size:27
Alignment explanation
Indices: 70739877--70739998 Score: 111
Period size: 27 Copynumber: 4.5 Consensus size: 27
70739867 CTTAATTGAA
* * * * *
70739877 AAAATGACTATTTTACCCTTGTGGGGT
1 AAAATGATTGTTTTGCCCTTATGTGGT
* *
70739904 AAAATGACTAG-TTTGCCCTTATGAGGT
1 AAAATGA-TTGTTTTGCCCTTATGTGGT
* *
70739931 AAAATGACTGTTTTTCCCTTATGTGGT
1 AAAATGATTGTTTTGCCCTTATGTGGT
* * *
70739958 AAAATGGTTGTTTTGCCCTTTTATGGT
1 AAAATGATTGTTTTGCCCTTATGTGGT
*
70739985 AAGATGATTGTTTT
1 AAAATGATTGTTTT
70739999 ACCTCTATGT
Statistics
Matches: 76, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 1 0.01
27 75 0.99
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (27 bp):
AAAATGATTGTTTTGCCCTTATGTGGT
Found at i:70741457 original size:27 final size:27
Alignment explanation
Indices: 70741362--70741495 Score: 133
Period size: 27 Copynumber: 5.0 Consensus size: 27
70741352 CCTTAATTGA
* * *
70741362 TAAAATGACTATTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTACCCTTATGTGG
* *
70741389 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTACCCTTATGTGG
* * *
70741416 AAAAATGACTATTTTTCCCTTATGTGG
1 TAAAATGACTGTTTTACCCTTATGTGG
** * *
70741443 TAAAATGGTTGTTTTACCCTTTTATGG
1 TAAAATGACTGTTTTACCCTTATGTGG
* * *
70741470 TAAGATGATTGTTTTACCTTTATGTG
1 TAAAATGACTGTTTTACCCTTATGTG
70741496 ATGTATGTTT
Statistics
Matches: 89, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (27 bp):
TAAAATGACTGTTTTACCCTTATGTGG
Found at i:70741804 original size:18 final size:17
Alignment explanation
Indices: 70741777--70741813 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 17
70741767 ACTATTATTA
70741777 CACTTTTACTGTTACTG
1 CACTTTTACTGTTACTG
70741794 CACTGTTTACTGTTACTG
1 CACT-TTTACTGTTACTG
70741812 CA
1 CA
70741814 ATGGGCCAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (17 bp):
CACTTTTACTGTTACTG
Found at i:70745146 original size:54 final size:54
Alignment explanation
Indices: 70745085--70745266 Score: 267
Period size: 54 Copynumber: 3.4 Consensus size: 54
70745075 CCTTAATCGA
* **
70745085 TAAAATGATTGTTTTGCCCTTATGGGGTAAAATGACTGTTTTGCCCTTATGGGG
1 TAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATATGG
* *
70745139 TACAATGATTGTTTTGCCCTTAT-AGGTAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATATGG
* * * *
70745192 TAAAATGACTGTATTGCCCTTATGAGGCAAAATGACTGTTTTTCCCTTATATGG
1 TAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATATGG
*
70745246 TAAAATGGTTGTTTTGCCCTT
1 TAAAATGATTGTTTTGCCCTT
70745267 TTATGGTAAG
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
53 46 0.41
54 67 0.59
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (54 bp):
TAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATATGG
Found at i:70745184 original size:80 final size:81
Alignment explanation
Indices: 70745085--70745282 Score: 263
Period size: 80 Copynumber: 2.5 Consensus size: 81
70745075 CCTTAATCGA
* * * * * *
70745085 TAAAATGATTGTTTTGCCCTTATGGGGTAAAATGACTGTTTTGCCCTTATGGGGTACAATGATTG
1 TAAAATGATTGTTTTGCCCTTATAGGGTAAAATGACTGTATTGCCCTTATGAGGCAAAATGACTG
70745150 TTTTGCCCTTATA-GG
66 TTTTGCCCTTATATGG
* * *
70745165 TAAAATGACTATTTTGCCCTTATATGGTAAAATGACTGTATTGCCCTTATGAGGCAAAATGACTG
1 TAAAATGATTGTTTTGCCCTTATAGGGTAAAATGACTGTATTGCCCTTATGAGGCAAAATGACTG
*
70745230 TTTTTCCCTTATATGG
66 TTTTGCCCTTATATGG
* * * *
70745246 TAAAATGGTTGTTTTGCCCTTTTATGGTAAGATGACT
1 TAAAATGATTGTTTTGCCCTTATAGGGTAAAATGACT
70745283 ATTTTACCCC
Statistics
Matches: 102, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 68 0.67
81 34 0.33
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.40
Consensus pattern (81 bp):
TAAAATGATTGTTTTGCCCTTATAGGGTAAAATGACTGTATTGCCCTTATGAGGCAAAATGACTG
TTTTGCCCTTATATGG
Found at i:70745271 original size:27 final size:27
Alignment explanation
Indices: 70745085--70745287 Score: 239
Period size: 27 Copynumber: 7.6 Consensus size: 27
70745075 CCTTAATCGA
* **
70745085 TAAAATGATTGTTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATATGG
**
70745112 TAAAATGACTGTTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* *
70745139 TACAATGATTGTTTTGCCCTTATA-GG
1 TAAAATGACTGTTTTGCCCTTATATGG
*
70745165 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
*
70745192 TAAAATGACTGTATTGCCCTTATGA-GG
1 TAAAATGACTGTTTTGCCCTTAT-ATGG
* *
70745219 CAAAATGACTGTTTTTCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
** *
70745246 TAAAATGGTTGTTTTGCCCTTTTATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* *
70745273 TAAGATGACTATTTT
1 TAAAATGACTGTTTT
70745288 ACCCCAATGT
Statistics
Matches: 152, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 24 0.16
27 127 0.84
28 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATATGG
Found at i:70747684 original size:46 final size:44
Alignment explanation
Indices: 70747631--70747797 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 44
70747621 GTTGAGCATT
70747631 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGAGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGAGAA--TC
* * *
70747677 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACT-AGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGT-A-TGA-GAATC
* * *
70747724 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGAG-A-ATC
*
70747770 CGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCA
70747798 TTTAGGGGCG
Statistics
Matches: 102, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
44 2 0.02
45 2 0.02
46 59 0.58
47 33 0.32
48 3 0.03
49 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (44 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGAGAATC
Found at i:70747790 original size:93 final size:93
Alignment explanation
Indices: 70747626--70747796 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
70747616 GGATGGTTGA
* * ***
70747626 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGAGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACACCCGAACTCGTTGAGT
70747691 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
70747719 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACACCCGAACTCGTTGAGT
70747784 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
70747797 ATTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:70761037 original size:42 final size:43
Alignment explanation
Indices: 70760977--70761065 Score: 171
Period size: 42 Copynumber: 2.1 Consensus size: 43
70760967 CACGAGCAGA
70760977 GACATGGGCGTGTGTCTCAGCCATGTGTGACACATGGCCAGGT
1 GACATGGGCGTGTGTCTCAGCCATGTGTGACACATGGCCAGGT
70761020 GACAT-GGCGTGTGTCTCAGCCATGTGTGACACATGGCCAGGT
1 GACATGGGCGTGTGTCTCAGCCATGTGTGACACATGGCCAGGT
70761062 GACA
1 GACA
70761066 CGACCGTGTG
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 41 0.89
43 5 0.11
ACGTcount: A:0.20, C:0.24, G:0.34, T:0.22
Consensus pattern (43 bp):
GACATGGGCGTGTGTCTCAGCCATGTGTGACACATGGCCAGGT
Found at i:70763832 original size:21 final size:21
Alignment explanation
Indices: 70763808--70763848 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
70763798 ACCCTACAGG
*
70763808 GGTATTTCGGTATTTCTACCC
1 GGTATTTCGGTAATTCTACCC
70763829 GGTATTTCGGTAATTCTACC
1 GGTATTTCGGTAATTCTACC
70763849 TACAGGGGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.41
Consensus pattern (21 bp):
GGTATTTCGGTAATTCTACCC
Found at i:70763885 original size:27 final size:26
Alignment explanation
Indices: 70763764--70763941 Score: 111
Period size: 27 Copynumber: 6.9 Consensus size: 26
70763754 GGCAAAATGG
* * * *
70763764 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAAGGGTATTTC-A
* *
70763791 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTC-A
* *
70763818 TATTTCTA-CC--C---GGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTC-A
*
70763839 TAATTCTA-CCTACAGGGGTATTTCTA
1 TAATTCTACCCTACAAGGGTATTTC-A
* * *
70763865 TATTTCTATCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTC-A
* *
70763892 TAACTCTACCCTACAGGGGTATTTCA
1 TAATTCTACCCTACAAGGGTATTTCA
*
70763918 GTAATTCTACCCTA-TAGGGTATTT
1 -TAATTCTACCCTACAAGGGTATTT
70763942 TGGTAATTTT
Statistics
Matches: 124, Mismatches: 20, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
21 19 0.15
23 1 0.01
24 1 0.01
26 25 0.20
27 78 0.63
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
TAATTCTACCCTACAAGGGTATTTCA
Found at i:70763967 original size:27 final size:26
Alignment explanation
Indices: 70763933--70764165 Score: 166
Period size: 27 Copynumber: 8.7 Consensus size: 26
70763923 TCTACCCTAT
70763933 AGGGTATTTTGGTAATTTTACAAGTTG
1 AGGGTATTTTGGTAATTTTACAA-TTG
** * * *
70763960 AGGGTATTTCAGTAATTTCACAAATC
1 AGGGTATTTTGGTAATTTTACAATTG
*
70763986 AGGGGTATTTTGGTAATTTTACAAGTCG
1 A-GGGTATTTTGGTAATTTTACAA-TTG
** * * *
70764014 AGGGTATTTCAGTAATTTCACAAATC
1 AGGGTATTTTGGTAATTTTACAATTG
* *
70764040 AGGGGTATTTTGGTAATTTCACAAACT-
1 A-GGGTATTTTGGTAATTTTAC-AATTG
***
70764067 AGGGGTATTTTGGTAATTTTACAAACC
1 A-GGGTATTTTGGTAATTTTACAATTG
*
70764094 AGGGGTATTTTGGTAATTTTTCTAATTG
1 A-GGGTATTTTGGTAATTTTAC-AATTG
***
70764122 AGGGTA-AACGGTAATTCTGTA-AATTG
1 AGGGTATTTTGGTAATT-T-TACAATTG
*
70764148 GGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
70764166 GGTAAACTAA
Statistics
Matches: 162, Mismatches: 35, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
26 23 0.14
27 131 0.81
28 8 0.05
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAATTG
Found at i:70764003 original size:54 final size:54
Alignment explanation
Indices: 70763934--70764127 Score: 275
Period size: 54 Copynumber: 3.6 Consensus size: 54
70763924 CTACCCTATA
70763934 GGGTATTTTGGTAATTTTACAAGTTGAGGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAGTTGAGGGTATTTCAGTAATTTCACAAATCAG
*
70763988 GGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAGTTGAGGGTATTTCAGTAATTTCACAAATCAG
* ** ** * *
70764042 GGGTATTTTGGTAATTTCACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAGTTGA-GGGTATTTCAGTAATTTCACAAATCAG
*
70764096 GGGTATTTTGGTAATTTTTCTAA-TTGAGGGTA
1 GGGTATTTTGGTAATTTTAC-AAGTTGAGGGTA
70764128 AACGGTAATT
Statistics
Matches: 125, Mismatches: 12, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
53 1 0.01
54 121 0.97
55 3 0.02
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAGTTGAGGGTATTTCAGTAATTTCACAAATCAG
Found at i:70764127 original size:81 final size:80
Alignment explanation
Indices: 70763933--70764127 Score: 241
Period size: 81 Copynumber: 2.4 Consensus size: 80
70763923 TCTACCCTAT
70763933 AGGGTATTTTGGTAATTTTACAAGTTGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTG
1 AGGGTATTTTGGTAATTTTACAA-TTGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTG
**
70763998 GTAATTTTACAAGTCG
65 GTAATTTTACAAACCG
** * * * **
70764014 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAA-CTAGGGGTATTTT
1 AGGGTATTTTGGTAATTTTACAATTGA-GGGTATTTCAGTAATTTCACAAATC-AGGGGTATTTT
70764078 GGTAATTTTACAAACC-
64 GGTAATTTTACAAACCG
*
70764094 AGGGGTATTTTGGTAATTTTTCTAATTGAGGGTA
1 A-GGGTATTTTGGTAATTTTAC-AATTGAGGGTA
70764128 AACGGTAATT
Statistics
Matches: 95, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
80 4 0.04
81 87 0.92
82 4 0.04
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (80 bp):
AGGGTATTTTGGTAATTTTACAATTGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGG
TAATTTTACAAACCG
Found at i:70781254 original size:43 final size:42
Alignment explanation
Indices: 70781200--70781343 Score: 148
Period size: 43 Copynumber: 3.4 Consensus size: 42
70781190 GCCGACATCG
* *
70781200 CAGACATGGTCTTACATGTAATTCAATAATGATGCCTTTGTCC
1 CAGACATGGTCTTACATGTAATTCAAT-ACGATGCCTATGTCC
* ** * *
70781243 CAGACAGGGTCTTACA-CAAAATCAGATACGATGCCGATGTCC
1 CAGACATGGTCTTACATGTAATTCA-ATACGATGCCTATGTCC
* *
70781285 CAGACATGGTCTTATATGTAAATCTCAAT-CGAGGCCTATGTCC
1 CAGACATGGTCTTACATGT-AAT-TCAATACGATGCCTATGTCC
*
70781328 CAGACACGGTCTTACA
1 CAGACATGGTCTTACA
70781344 CGATGTCTCA
Statistics
Matches: 81, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
42 31 0.38
43 43 0.53
44 4 0.05
45 3 0.04
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (42 bp):
CAGACATGGTCTTACATGTAATTCAATACGATGCCTATGTCC
Found at i:70786543 original size:49 final size:49
Alignment explanation
Indices: 70786426--70786662 Score: 269
Period size: 49 Copynumber: 4.8 Consensus size: 49
70786416 TGAGGTCGCA
* * * * * *
70786426 TGTGTAGTACTAAGTGCAGGCTACAATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* * **
70786477 TGTGTAGTACTAAGTGCAAGCTACTACGTGT-TCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
70786526 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * * * *
70786575 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
** * *
70786624 TGTGTAGTACTATTTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
70786663 GCTTTGGCTA
Statistics
Matches: 159, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
48 1 0.01
49 121 0.76
50 10 0.06
51 27 0.17
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:70786628 original size:98 final size:100
Alignment explanation
Indices: 70786418--70786662 Score: 316
Period size: 98 Copynumber: 2.5 Consensus size: 100
70786408 ATCTATTGTG
* * *
70786418 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACAATGCGTACCCGAAAACTGTGATCACGTGTGTA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTA
* * **
70786483 GTACTAAGTGCAAGCTACTACGTGTTCAGATGGTT
66 GTACTAAGTGCAAGCTACTACATGTCCAGATAATT
* * * * *
70786518 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACGTGTGTA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTA
* *
70786581 GTACTAAGTGCAGGCTACTACATGTACCGGATAATT
66 GTACTAAGTGCAAGCTACTACATGT-CCAGATAATT
**
70786617 A-GTCGCATGTGTAGTACTATTTGCAGGCTACTATGCGTACCAGATA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
70786663 GCTTTGGCTA
Statistics
Matches: 124, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
98 75 0.60
99 8 0.06
100 41 0.33
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (100 bp):
AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTA
GTACTAAGTGCAAGCTACTACATGTCCAGATAATT
Found at i:70789602 original size:15 final size:15
Alignment explanation
Indices: 70789582--70789618 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
70789572 ACAGACGGAT
70789582 ATCTTCATTTAGTCC
1 ATCTTCATTTAGTCC
70789597 ATCTTCATTTAGTCC
1 ATCTTCATTTAGTCC
70789612 ATCTTCA
1 ATCTTCA
70789619 ATACTTCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.22, C:0.27, G:0.05, T:0.46
Consensus pattern (15 bp):
ATCTTCATTTAGTCC
Found at i:70792935 original size:49 final size:48
Alignment explanation
Indices: 70792809--70793082 Score: 408
Period size: 49 Copynumber: 5.7 Consensus size: 48
70792799 GCCCTTCGGA
* * * * *
70792809 CTTATCACAT-TTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70792856 CCTATCACATA-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70792903 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70792952 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
70793001 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70793050 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA-TTATACACTTTCACATTCATC
70793083 GCGTAGAATC
Statistics
Matches: 211, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
47 50 0.24
49 160 0.76
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (48 bp):
CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70795881 original size:46 final size:46
Alignment explanation
Indices: 70795830--70795954 Score: 205
Period size: 46 Copynumber: 2.7 Consensus size: 46
70795820 GGTTGAGCAT
*
70795830 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
* *
70795876 TCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
* *
70795922 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70795955 GGGGCGGATT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
Found at i:70796216 original size:19 final size:20
Alignment explanation
Indices: 70796179--70796216 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
70796169 ATAAGGTGGT
70796179 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
70796199 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
70796217 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:70799209 original size:29 final size:29
Alignment explanation
Indices: 70799074--70799208 Score: 216
Period size: 29 Copynumber: 4.7 Consensus size: 29
70799064 GCTTGGAAGG
70799074 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
70799103 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
70799132 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
70799161 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
70799190 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
70799209 GATCGTTTAT
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:70807226 original size:29 final size:29
Alignment explanation
Indices: 70807091--70807225 Score: 216
Period size: 29 Copynumber: 4.7 Consensus size: 29
70807081 GCTTGGAAGG
70807091 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
70807120 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
70807149 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
70807178 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
70807207 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
70807226 GATCGTTTAT
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:70821153 original size:28 final size:27
Alignment explanation
Indices: 70821105--70821224 Score: 114
Period size: 28 Copynumber: 4.3 Consensus size: 27
70821095 TGCATGACTG
*
70821105 TGAATGTGATTGGGGCTGATGGGCCATA
1 TGAATGTGATT-GGGCCGATGGGCCATA
* * *
70821133 TGAATGTGATTAAGGCCGATGTGCTATA
1 TGAATGTGATT-GGGCCGATGGGCCATA
**
70821161 TGAATGTGATTTGGGTCTAATGGGCCATA
1 TGAATGTGA-TTGGG-CCGATGGGCCATA
* *
70821190 TGAATGAGATTGGGCCTAGTGGGCCATA
1 TGAATGTGATTGGGCCGA-TGGGCCATA
*
70821218 TGCATGT
1 TGAATGT
70821225 TTGTAGACTT
Statistics
Matches: 74, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
27 2 0.03
28 53 0.72
29 19 0.26
ACGTcount: A:0.24, C:0.12, G:0.33, T:0.31
Consensus pattern (27 bp):
TGAATGTGATTGGGCCGATGGGCCATA
Found at i:70821219 original size:57 final size:56
Alignment explanation
Indices: 70821105--70821224 Score: 143
Period size: 57 Copynumber: 2.1 Consensus size: 56
70821095 TGCATGACTG
* * * *
70821105 TGAATGTGATTGGGGCTGATGGGCCATATGAATGTGATTAAGGCCGATGTGCTATA
1 TGAATGTGATTGGGGCTAATGGGCCATATGAATGAGATTAAGGCCGATGGGCCATA
* * *
70821161 TGAATGTGATTTGGGTCTAATGGGCCATATGAATGAGATT-GGGCCTAGTGGGCCATA
1 TGAATGTGA-TTGGGGCTAATGGGCCATATGAATGAGATTAAGGCCGA-TGGGCCATA
*
70821218 TGCATGT
1 TGAATGT
70821225 TTGTAGACTT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
56 14 0.26
57 40 0.74
ACGTcount: A:0.24, C:0.12, G:0.33, T:0.31
Consensus pattern (56 bp):
TGAATGTGATTGGGGCTAATGGGCCATATGAATGAGATTAAGGCCGATGGGCCATA
Found at i:70825620 original size:27 final size:27
Alignment explanation
Indices: 70825586--70825776 Score: 197
Period size: 27 Copynumber: 7.1 Consensus size: 27
70825576 GTACCTAGAC
*
70825586 CCCTTATGTGGTAAAATAACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* * *
70825613 CCCATATGTGGTGAAATGACTGTTTT-
1 CCCTTATGTGGTAAAATGACTATTTTG
* * * *
70825639 CCTTTATATGGTAAAATGACTGTTTCG
1 CCCTTATGTGGTAAAATGACTATTTTG
*
70825666 CCCTTATGTGGTAAAATGACTATTTTT
1 CCCTTATGTGGTAAAATGACTATTTTG
* * * *
70825693 CCCTTATATGGTAAAATGATTGTTTTT
1 CCCTTATGTGGTAAAATGACTATTTTG
*
70825720 CCC-TATGTGGTGAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* * * **
70825746 CTCTTATATGGTAAGATGACTGCTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
70825773 CCCT
1 CCCT
70825777 ATTTGATGTA
Statistics
Matches: 133, Mismatches: 29, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
26 41 0.31
27 92 0.69
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (27 bp):
CCCTTATGTGGTAAAATGACTATTTTG
Found at i:70825676 original size:53 final size:53
Alignment explanation
Indices: 70825589--70825776 Score: 234
Period size: 53 Copynumber: 3.5 Consensus size: 53
70825579 CCTAGACCCC
* * * * *
70825589 TTATGTGGTAAAATAACTATTTTGCCCATATGTGGTGAAATGACTGTTTTCCT
1 TTATATGGTAAAATGACTGTTTTGCCCTTATGTGGTGAAATGACTATTTTCCT
* * *
70825642 TTATATGGTAAAATGACTGTTTCGCCCTTATGTGGTAAAATGACTATTTTTCCC
1 TTATATGGTAAAATGACTGTTTTGCCCTTATGTGGTGAAATGACTA-TTTTCCT
* * *
70825696 TTATATGGTAAAATGATTGTTTTTCCC-TATGTGGTGAAATGACTATTTTGCT
1 TTATATGGTAAAATGACTGTTTTGCCCTTATGTGGTGAAATGACTATTTTCCT
* *
70825748 CTTATATGGTAAGATGACTGCTTTGCCCT
1 -TTATATGGTAAAATGACTGTTTTGCCCT
70825777 ATTTGATGTA
Statistics
Matches: 114, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
52 5 0.04
53 79 0.69
54 30 0.26
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (53 bp):
TTATATGGTAAAATGACTGTTTTGCCCTTATGTGGTGAAATGACTATTTTCCT
Found at i:70825736 original size:80 final size:80
Alignment explanation
Indices: 70825586--70825775 Score: 220
Period size: 80 Copynumber: 2.4 Consensus size: 80
70825576 GTACCTAGAC
* * * *
70825586 CCCTTATGTGGTAAAATAACTATTTTGCCCATATGTGGTGAAATGACTGTTTTCCTTTATATGGT
1 CCCTTATGTGGTAAAATGACTATTTTGCCCATATATGGTAAAATGACTGTTTTCCTCTATATGGT
*
70825651 AAAATGACTGTTTCG
66 AAAATGACTATTTCG
* * * *
70825666 CCCTTATGTGGTAAAATGACTATTTTTCCCTTATATGGTAAAATGATTGTTTTTCC-CTATGTGG
1 CCCTTATGTGGTAAAATGACTATTTTGCCCATATATGGTAAAATGACTG-TTTTCCTCTATATGG
* *
70825730 TGAAATGACTATTTTG
65 TAAAATGACTATTTCG
* * * **
70825746 CTCTTATATGGTAAGATGACTGCTTTGCCC
1 CCCTTATGTGGTAAAATGACTATTTTGCCC
70825776 TATTTGATGT
Statistics
Matches: 92, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 86 0.93
81 6 0.07
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (80 bp):
CCCTTATGTGGTAAAATGACTATTTTGCCCATATATGGTAAAATGACTGTTTTCCTCTATATGGT
AAAATGACTATTTCG
Found at i:70827629 original size:52 final size:52
Alignment explanation
Indices: 70827565--70827669 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
70827555 TGAACTTGCA
*
70827565 TGAGTTTTATGCTAATGGTATAATGTTGCAAAATGCATATGAAATGACATGT
1 TGAGTTTTATGCTAACGGTATAATGTTGCAAAATGCATATGAAATGACATGT
70827617 TGAGTTTTATGCTAACGGTATAATGTTGCAAAATGCATATGAAATGACATGT
1 TGAGTTTTATGCTAACGGTATAATGTTGCAAAATGCATATGAAATGACATGT
70827669 T
1 T
70827670 CAAAGATAGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.36
Consensus pattern (52 bp):
TGAGTTTTATGCTAACGGTATAATGTTGCAAAATGCATATGAAATGACATGT
Found at i:70832258 original size:39 final size:39
Alignment explanation
Indices: 70832211--70832393 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
70832201 AATGTTCGAG
*
70832211 TGATATCCGGGCTAAGCCCGAAGGCTATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
70832250 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
70832289 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
70832328 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
70832368 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
70832394 GTTTGAACGA
Statistics
Matches: 125, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 87 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:70834453 original size:53 final size:54
Alignment explanation
Indices: 70834271--70834477 Score: 186
Period size: 53 Copynumber: 3.8 Consensus size: 54
70834261 ATTAGGGTTT
* * * * *
70834271 AAGGATACCA-AGTAAGACCATGCCAAGGCATGGCATTGGTATGTTCTACAAGGC
1 AAGGATACCATA-TAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * * * * * *
70834325 AGGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATATAAGACCATGTCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * * * *
70834380 AAAGATCCCATGTAAGACCATG-CGAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATATAAGACCATGTC-AAGACATGGCAATGGTAAGTTCTATAAGGC
* *
70834433 AAGGATACCACATAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATATAAGACCATGTCAAGACATGGCAATGGTAAGTT
70834478 TAAAAAGGAA
Statistics
Matches: 120, Mismatches: 29, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
53 43 0.36
54 37 0.31
55 40 0.33
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (54 bp):
AAGGATACCATATAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:70837146 original size:24 final size:24
Alignment explanation
Indices: 70837119--70837164 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
70837109 TCGAAACTTA
*
70837119 AAATTTTGGGTCATTACACCCTTC
1 AAATTTTGGGGCATTACACCCTTC
70837143 AAATTTTGGGGCATTACACCCT
1 AAATTTTGGGGCATTACACCCT
70837165 CAGTTTTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (24 bp):
AAATTTTGGGGCATTACACCCTTC
Found at i:70837513 original size:28 final size:29
Alignment explanation
Indices: 70837460--70837572 Score: 126
Period size: 28 Copynumber: 4.0 Consensus size: 29
70837450 TGATCTATTC
* * *
70837460 AGAGTTCGCCACAAAGAC-ATTCCTTTTCT
1 AGAGTTTGCCAAAAAGGCTATT-CTTTTCT
*
70837489 A-AGTTTGCCATAAAGGCTATTCTTTT-T
1 AGAGTTTGCCAAAAAGGCTATTCTTTTCT
*
70837516 AGAGTTCGCCAAAAAGGCTATTCTTTTC-
1 AGAGTTTGCCAAAAAGGCTATTCTTTTCT
* *
70837544 AGAGTTTTCCAAAAAGGCTACTCTTTTCT
1 AGAGTTTGCCAAAAAGGCTATTCTTTTCT
70837573 GTCGTGTTTA
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 66 0.92
29 4 0.06
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.36
Consensus pattern (29 bp):
AGAGTTTGCCAAAAAGGCTATTCTTTTCT
Found at i:70837525 original size:56 final size:56
Alignment explanation
Indices: 70837460--70837570 Score: 145
Period size: 56 Copynumber: 2.0 Consensus size: 56
70837450 TGATCTATTC
* * *
70837460 AGAGTTCGCCACAAAGAC-ATTCCTTTTCTA-AGTTTGCCATAAAGGCTATTCTTTTT
1 AGAGTTCGCCAAAAAGACTATT-CTTTTC-AGAGTTTGCCAAAAAGGCTACTCTTTTT
* *
70837516 AGAGTTCGCCAAAAAGGCTATTCTTTTCAGAGTTTTCCAAAAAGGCTACTCTTTT
1 AGAGTTCGCCAAAAAGACTATTCTTTTCAGAGTTTGCCAAAAAGGCTACTCTTTT
70837571 CTGTCGTGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
55 1 0.02
56 44 0.92
57 3 0.06
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (56 bp):
AGAGTTCGCCAAAAAGACTATTCTTTTCAGAGTTTGCCAAAAAGGCTACTCTTTTT
Found at i:70838362 original size:17 final size:18
Alignment explanation
Indices: 70838340--70838373 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70838330 TCACATTAAA
70838340 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
70838357 GTGTTTTCATTGAAAAC
1 GTGTTTTCAGTGAAAAC
70838374 TCTTCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:70843561 original size:29 final size:29
Alignment explanation
Indices: 70843524--70843600 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
70843514 AATCGTATTC
* *
70843524 ATATAGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* *
70843553 ATATGGCCCATTAGGACCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
70843582 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
70843601 GTCATATTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:70843849 original size:16 final size:16
Alignment explanation
Indices: 70843828--70843858 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70843818 CCAAACTTTT
*
70843828 GGCTTTTCGGCATTTC
1 GGCTTTTCAGCATTTC
70843844 GGCTTTTCAGCATTT
1 GGCTTTTCAGCATTT
70843859 ATAATGTGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.45
Consensus pattern (16 bp):
GGCTTTTCAGCATTTC
Found at i:70847011 original size:10 final size:10
Alignment explanation
Indices: 70846996--70847027 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
70846986 TTTTCATTTA
70846996 TTCACACTTT
1 TTCACACTTT
70847006 TTCACACTTT
1 TTCACACTTT
70847016 TTCACACATTT
1 TTCACAC-TTT
70847027 T
1 T
70847028 ATAGACTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 17 0.81
11 4 0.19
ACGTcount: A:0.22, C:0.28, G:0.00, T:0.50
Consensus pattern (10 bp):
TTCACACTTT
Found at i:70850871 original size:68 final size:70
Alignment explanation
Indices: 70850799--70850996 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
70850789 ACGCCCTATA
* * * *
70850799 GTAGCTAGGTCACATGTGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
70850861 ATAAAT
65 ATAAAT
* *
70850867 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
70850932 ATAAAT
65 ATAAAT
* *
70850938 GTAGCTAGGTCTCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
70850997 AGACAAATCG
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 3 0.03
70 1 0.01
71 92 0.77
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (70 bp):
GTAGCTAGGTCACATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:70850922 original size:71 final size:71
Alignment explanation
Indices: 70850833--70850996 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
70850823 GAGATGTATC
70850833 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70850898 AGGACA
66 AGGACA
*
70850904 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCTCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70850969 AGGACA
66 AGGACA
70850975 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
70850997 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:70861304 original size:31 final size:31
Alignment explanation
Indices: 70861249--70861326 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
70861239 CTCAACATAT
* *
70861249 ACTGGGCTGAAGCC-TTTCATAATTCATAAC
1 ACTGGGCCGAAGCCTTTTCAAAATTCATAAC
*
70861279 ACTGGGCCGAAGCCTTTTCAAAATTCATATC
1 ACTGGGCCGAAGCCTTTTCAAAATTCATAAC
* *
70861310 AGTAGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
70861327 ACTGTAAGCG
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 13 0.31
31 29 0.69
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCAAAATTCATAAC
Found at i:70861565 original size:24 final size:25
Alignment explanation
Indices: 70861538--70861590 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
70861528 GCCTAGCCTC
70861538 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
70861562 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
70861587 TTTT
1 TTTT
70861591 GCACTTCCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:70861673 original size:11 final size:10
Alignment explanation
Indices: 70861657--70861693 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
70861647 CATCTGATAA
70861657 CATATCATGT
1 CATATCATGT
70861667 GCATATCATGT
1 -CATATCATGT
70861678 CATATCATGT
1 CATATCATGT
70861688 -ATATCA
1 CATATCA
70861694 AAATCTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:70861681 original size:21 final size:21
Alignment explanation
Indices: 70861637--70861687 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
70861627 TATAGTGAGT
* *
70861637 ATATCATGTGCATCTGATAAC
1 ATATCATGTGCATATCATAAC
**
70861658 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATAAC
70861679 ATATCATGT
1 ATATCATGT
70861688 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:70869081 original size:31 final size:31
Alignment explanation
Indices: 70869026--70869103 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
70869016 CTCAACATAT
* *
70869026 ACTGGGCTGAAGCC-TTTCATAATTCATAAC
1 ACTGGGCCGAAGCCTTTTCAAAATTCATAAC
*
70869056 ACTGGGCCGAAGCCTTTTCAAAATTCATATC
1 ACTGGGCCGAAGCCTTTTCAAAATTCATAAC
* *
70869087 AGTAGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
70869104 ACTGTAAGCG
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 13 0.31
31 29 0.69
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCAAAATTCATAAC
Found at i:70869342 original size:24 final size:25
Alignment explanation
Indices: 70869315--70869367 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
70869305 GCCTAGCCTC
70869315 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
70869339 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
70869364 TTTT
1 TTTT
70869368 GCACTTCCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:70869450 original size:11 final size:10
Alignment explanation
Indices: 70869434--70869470 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
70869424 CATCTGATAA
70869434 CATATCATGT
1 CATATCATGT
70869444 GCATATCATGT
1 -CATATCATGT
70869455 CATATCATGT
1 CATATCATGT
70869465 -ATATCA
1 CATATCA
70869471 AAATCTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:70869458 original size:21 final size:21
Alignment explanation
Indices: 70869414--70869464 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
70869404 TATAGTGAGT
* *
70869414 ATATCATGTGCATCTGATAAC
1 ATATCATGTGCATATCATAAC
**
70869435 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATAAC
70869456 ATATCATGT
1 ATATCATGT
70869465 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:70874413 original size:22 final size:23
Alignment explanation
Indices: 70874374--70874421 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
70874364 AAAAATTTTA
70874374 CCAGTAAAAATGCAAATAAATCG
1 CCAGTAAAAATGCAAATAAATCG
* *
70874397 CCAGTAAAAGTG-TAATAAATCG
1 CCAGTAAAAATGCAAATAAATCG
70874419 CCA
1 CCA
70874422 TTCGCCTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.48, C:0.19, G:0.15, T:0.19
Consensus pattern (23 bp):
CCAGTAAAAATGCAAATAAATCG
Found at i:70875984 original size:29 final size:29
Alignment explanation
Indices: 70875942--70875999 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
70875932 AAAAAGAAAA
70875942 AAAGAAAGAGATGAAAAAACTAGGTGTAG
1 AAAGAAAGAGATGAAAAAACTAGGTGTAG
70875971 AAAGAAAGAGATGAAAAAACTAGGTGTAG
1 AAAGAAAGAGATGAAAAAACTAGGTGTAG
70876000 GCGACGACAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.55, C:0.03, G:0.28, T:0.14
Consensus pattern (29 bp):
AAAGAAAGAGATGAAAAAACTAGGTGTAG
Found at i:70884855 original size:18 final size:19
Alignment explanation
Indices: 70884832--70884869 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
70884822 GTATACATGA
70884832 AAGTATATGTGG-TATGTG
1 AAGTATATGTGGATATGTG
*
70884850 AAGTATATTTGGATATGTG
1 AAGTATATGTGGATATGTG
70884869 A
1 A
70884870 CAGCCCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.29, T:0.39
Consensus pattern (19 bp):
AAGTATATGTGGATATGTG
Found at i:70886702 original size:40 final size:39
Alignment explanation
Indices: 70886537--70886720 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
70886527 AAATTGAATG
* * *
70886537 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
70886577 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
70886617 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
70886657 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
70886696 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
70886721 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:70886745 original size:80 final size:81
Alignment explanation
Indices: 70886577--70886765 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
70886567 GCTGGAAATT
* * * *
70886577 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
70886642 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
70886658 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
70886721 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
70886737 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
70886766 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:70894807 original size:40 final size:39
Alignment explanation
Indices: 70894643--70894825 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
70894633 AAATTGAATG
* *
70894643 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
70894682 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
70894722 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
70894762 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
70894801 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
70894826 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 15 0.13
40 92 0.81
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:70894850 original size:80 final size:81
Alignment explanation
Indices: 70894682--70894870 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
70894672 GCTGGAAATT
* * * *
70894682 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
70894747 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
70894763 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
70894826 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
70894842 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
70894871 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:70898526 original size:79 final size:82
Alignment explanation
Indices: 70898386--70898570 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
70898376 TCGAATGATG
* * *
70898386 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
70898450 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
70898466 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
70898528 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
70898546 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70898571 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:70898578 original size:40 final size:40
Alignment explanation
Indices: 70898387--70898578 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
70898377 CGAATGATGT
* * * * *
70898387 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
70898427 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
70898467 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
70898506 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
70898546 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
70898579 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:70898601 original size:79 final size:79
Alignment explanation
Indices: 70898386--70898603 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
70898376 TCGAATGATG
* * * * ** *
70898386 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
70898449 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
70898466 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
70898531 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
70898546 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
70898604 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:70906563 original size:79 final size:82
Alignment explanation
Indices: 70906423--70906607 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
70906413 TCGAATGATG
* * *
70906423 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
70906487 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
70906503 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
70906565 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
70906583 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70906608 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:70906615 original size:40 final size:40
Alignment explanation
Indices: 70906424--70906615 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
70906414 CGAATGATGT
* * * * *
70906424 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
70906464 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
70906504 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
70906543 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
70906583 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
70906616 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:70906638 original size:79 final size:79
Alignment explanation
Indices: 70906423--70906640 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
70906413 TCGAATGATG
* * * * ** *
70906423 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
70906486 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
70906503 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
70906568 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
70906583 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
70906641 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:70908248 original size:40 final size:42
Alignment explanation
Indices: 70908204--70908424 Score: 155
Period size: 40 Copynumber: 5.5 Consensus size: 42
70908194 GCTCGCTTGT
* *
70908204 CTTCGGGACA-TT-GCCCGG-TTATAGTGATTCGCAC-AATTGC
1 CTTCGGGACATTTAGCCCGGATT-TAGTAACTCGCACGAA-TGC
70908244 CTTCGGGA-ATTTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACATTTAGCCCGGATTTAGTAACTCGCACGAATGC
* * * *
70908285 CTTCGGGAC--TTAACCC-GATTTTGGTAACTCGGACAAATGC
1 CTTCGGGACATTTAGCCCGGA-TTTAGTAACTCGCACGAATGC
* * * * *
70908325 CTTCGGGAC--TTAACCCGGTTTTGGTAACTAGCACAAATGC
1 CTTCGGGACATTTAGCCCGGATTTAGTAACTCGCACGAATGC
* * * * *
70908365 CTTCGGGA-ATTGA-CCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATTTAGCCCGGATTTAGTAAC-TCGCACGAATGC
*
70908406 CTTCGAGAC--TTAGCCCGGA
1 CTTCGGGACATTTAGCCCGGA
70908425 CACCATTCGA
Statistics
Matches: 153, Mismatches: 16, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
39 3 0.02
40 91 0.59
41 55 0.36
42 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (42 bp):
CTTCGGGACATTTAGCCCGGATTTAGTAACTCGCACGAATGC
Found at i:70908368 original size:80 final size:82
Alignment explanation
Indices: 70908236--70908386 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 82
70908226 AGTGATTCGC
* * * * * *
70908236 ACAATTGCCTTCGGGAATTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAACCC
1 ACAAATGCCTTCGGGAACTTAACCCGGATTTAGTAACTAGCACAAATGCCTTCGGGAATTAACCC
70908301 -GATTTTGGTAACTCGG
66 GGATTTTGGTAACTCGG
* * *
70908317 ACAAATGCCTTCGGG-ACTTAACCCGGTTTTGGTAACTAGCACAAATGCCTTCGGGAATTGACCC
1 ACAAATGCCTTCGGGAACTTAACCCGGATTTAGTAACTAGCACAAATGCCTTCGGGAATTAACCC
70908381 GGATTT
66 GGATTT
70908387 AGTCACTTAG
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
80 41 0.68
81 19 0.32
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (82 bp):
ACAAATGCCTTCGGGAACTTAACCCGGATTTAGTAACTAGCACAAATGCCTTCGGGAATTAACCC
GGATTTTGGTAACTCGG
Found at i:70912118 original size:51 final size:50
Alignment explanation
Indices: 70912063--70912184 Score: 172
Period size: 50 Copynumber: 2.4 Consensus size: 50
70912053 ATGAACAAAT
* * *
70912063 GAGTTACTTAATGCATGACTTAAATTAATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGACTT-AATTAATGATGAAAACTTAACTAACAAGA
* * * *
70912114 GAGTTACATAATGCATGTCATAATTTATGGTGAAAACTTAACTAACAAGA
1 GAGTTACATAATGCATGACTTAATTAATGATGAAAACTTAACTAACAAGA
70912164 GAGTTACATAATGCATGACTT
1 GAGTTACATAATGCATGACTT
70912185 TTTTAAATGC
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
50 44 0.71
51 18 0.29
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (50 bp):
GAGTTACATAATGCATGACTTAATTAATGATGAAAACTTAACTAACAAGA
Found at i:70915666 original size:39 final size:39
Alignment explanation
Indices: 70915612--70915731 Score: 186
Period size: 39 Copynumber: 3.1 Consensus size: 39
70915602 TTCAGTGATG
*
70915612 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAA
* *
70915651 TATATCCGGACTTAGGGTCCGCAGGCTATCTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAA
* * *
70915690 TATATCCGGACTTAAGGTCCGTAGGCTACGTGCTAGAAA
1 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAA
70915729 TAT
1 TAT
70915732 GTTCGGGCTA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAA
Found at i:70915751 original size:78 final size:78
Alignment explanation
Indices: 70915612--70915755 Score: 191
Period size: 78 Copynumber: 1.8 Consensus size: 78
70915602 TTCAGTGATG
* * * * **
70915612 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGTAGGCTACGTGCTAGAAATATATCCGGACTTAAAGTCCGCAGGC
70915677 TATCTGCTGGAAA
66 TATCTGCTGGAAA
* * *
70915690 TATATCCGGACTTAAGGTCCGTAGGCTACGTGCTAGAAATATGTTCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGTCCGTAGGCTACGTGCTAGAAATATATCCGGACTTAAAGT-CCGCAGG
70915754 CT
65 CT
70915756 TCAAGCTGGT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
77 4 0.07
78 52 0.93
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGTAGGCTACGTGCTAGAAATATATCCGGACTTAAAGTCCGCAGGC
TATCTGCTGGAAA
Found at i:70915755 original size:39 final size:39
Alignment explanation
Indices: 70915612--70915755 Score: 130
Period size: 39 Copynumber: 3.7 Consensus size: 39
70915602 TTCAGTGATG
** * * * *
70915612 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTATCTGCTAGAAA
** *
70915651 TATATCCGGACTTAGGGTCCGCAGGCTATCTGCTGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATCTGCTAGAAA
* *
70915690 TATATCCGGACTTAAGGTCCGTAGGCTA-CGTGCTAGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATC-TGCTAGAAA
* * *
70915729 TATGTTCGGGC-TAAAGTCCCGCAGGCT
1 TATATCCGGACTTAAAGT-CCGCAGGCT
70915756 TCAAGCTGGT
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
38 6 0.07
39 86 0.93
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAGGCTATCTGCTAGAAA
Found at i:70930419 original size:40 final size:40
Alignment explanation
Indices: 70930345--70930530 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
70930335 TCGAATGATG
* *
70930345 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
70930385 TCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
70930425 TCCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** *
70930465 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
70930506 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
70930531 AACGAGTAGT
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70930537 original size:80 final size:80
Alignment explanation
Indices: 70930345--70930530 Score: 236
Period size: 80 Copynumber: 2.3 Consensus size: 80
70930335 TCGAATGATG
*
70930345 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAATCCAGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCAGACTAAGATCCGAAGGCATT
*
70930409 TGTGCGAGTTACTAAA
65 TGTGCGAGCTACTAAA
* * * **
70930425 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCAGACTAAGAT-CCGAAGGCAT
70930488 TTGTGCGAGCTACTATAA
64 TTGTGCGAGCTACTA-AA
*
70930506 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70930531 AACGAGTAGT
Statistics
Matches: 91, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
79 2 0.02
80 80 0.88
81 9 0.10
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTT
GTGCGAGCTACTAAA
Found at i:70937526 original size:46 final size:46
Alignment explanation
Indices: 70937476--70937649 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
70937466 ATGGTTGAAC
*
70937476 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
* * * *
70937522 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--T
* *
70937569 ATCCCAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAAT
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
* *
70937615 GTCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70937650 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 61 0.58
47 28 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
Found at i:70937634 original size:93 final size:93
Alignment explanation
Indices: 70937475--70937644 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
70937465 GATGGTTGAA
* *
70937475 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCCGAACTCGTTGAGTT
1 CATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCGAACTCGTTGAGTT
70937540 GAGTCCGAGTTCGTGAGATGTAACTAGG
66 GAGTCCGAGTTCGTGAGATGTAACTAGG
* * *
70937568 CATCCCAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAGCTCGTTGAGTT
1 CATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCGAACTCGTTGAGTT
70937633 GAGTCCGAGTTC
66 GAGTCCGAGTTC
70937645 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (93 bp):
CATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAGG
Found at i:70944402 original size:22 final size:22
Alignment explanation
Indices: 70944354--70944402 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
70944344 TTAACCTAAT
70944354 CCAAATAACTTAAATAAGAAAC
1 CCAAATAACTTAAATAAGAAAC
*
70944376 TCAAATAACTTTAAA-AA-AATAC
1 CCAAATAAC-TTAAATAAGAA-AC
70944398 CCAAA
1 CCAAA
70944403 CTCAAAAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 2 0.09
22 16 0.70
23 5 0.22
ACGTcount: A:0.59, C:0.18, G:0.02, T:0.20
Consensus pattern (22 bp):
CCAAATAACTTAAATAAGAAAC
Found at i:70945709 original size:26 final size:27
Alignment explanation
Indices: 70945659--70945714 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
70945649 ACCATTATAA
*
70945659 ATAATTTTAAAATAAATTTCTATATTT
1 ATAAATTTAAAATAAATTTCTATATTT
* *
70945686 ATAAATTTATAAT-AATTTTTATATTT
1 ATAAATTTAAAATAAATTTCTATATTT
70945712 ATA
1 ATA
70945715 TAGAAAACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (27 bp):
ATAAATTTAAAATAAATTTCTATATTT
Found at i:70948688 original size:16 final size:16
Alignment explanation
Indices: 70948667--70948720 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
70948657 TTTGGTTCCT
*
70948667 TGTAATTGAATAGGGC
1 TGTAATTGAATAGAGC
70948683 TGTAATTGAATAGAGC
1 TGTAATTGAATAGAGC
*
70948699 TGTAATGGAATAGAGC
1 TGTAATTGAATAGAGC
*
70948715 TATAAT
1 TGTAAT
70948721 CAATAATTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (16 bp):
TGTAATTGAATAGAGC
Found at i:70961149 original size:42 final size:43
Alignment explanation
Indices: 70961039--70961154 Score: 121
Period size: 44 Copynumber: 2.7 Consensus size: 43
70961029 TGATATGTGT
* * *
70961039 TTTCGTGTAAGACGACGTCTGGGACATTGGCATTG-ACTTATGA
1 TTTCGTGTAAGACGACATCTGGGACGTTGGCATCGTACTT-TGA
* *
70961082 TTTACGTTTAAGACTACATCTGGGACGTTGGCATCGTA-TTTGA
1 TTT-CGTGTAAGACGACATCTGGGACGTTGGCATCGTACTTTGA
*
70961125 TTTCGTGTAAGAC-CCTATCTGGGACAGTTG
1 TTTCGTGTAAGACGAC-ATCTGGGAC-GTTG
70961155 TATCGATATT
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
41 1 0.02
42 18 0.29
43 13 0.21
44 29 0.47
45 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.34
Consensus pattern (43 bp):
TTTCGTGTAAGACGACATCTGGGACGTTGGCATCGTACTTTGA
Found at i:70961165 original size:43 final size:43
Alignment explanation
Indices: 70961090--70961196 Score: 110
Period size: 44 Copynumber: 2.5 Consensus size: 43
70961080 GATTTACGTT
* * * *
70961090 TAAGACTACATCTGGGACGTTGGCATCGTA-TTTGATTTCGTG
1 TAAGACCATATCTGGGACGTTGGCATCGTATTTTGATTACATG
* *
70961132 TAAGACCCTATCTGGGACAGTT-GTATCGATATTTTGATTACATG
1 TAAGACCATATCTGGGAC-GTTGGCATCG-TATTTTGATTACATG
* *
70961176 TAATACCATATTTGGGACGTT
1 TAAGACCATATCTGGGACGTT
70961197 TGGGGTTTGG
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
42 20 0.38
43 8 0.15
44 25 0.47
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.36
Consensus pattern (43 bp):
TAAGACCATATCTGGGACGTTGGCATCGTATTTTGATTACATG
Found at i:70966286 original size:40 final size:39
Alignment explanation
Indices: 70966236--70966431 Score: 139
Period size: 39 Copynumber: 5.0 Consensus size: 39
70966226 CAAATCCAAT
*
70966236 CACCACCACAAAGCATGCCAGACTTTAAGCCCGGATATAA
1 CACCAGCACAAAGCATGCCAGACTTT-AGCCCGGATATAA
* * ***
70966276 TACCAGCACAAAGCCTGTGGGACTTTAGCCCGGATATAA
1 CACCAGCACAAAGCATGCCAGACTTTAGCCCGGATATAA
* * ** * *
70966315 CACCAGCACAAATGCCTTCGGGGC-TTAACCCGGATATAA
1 CACCAGCACAAA-GCATGCCAGACTTTAGCCCGGATATAA
* * * **
70966354 CACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAA
1 CACCAGCAC-AAAGCATGCCAGACTTTAGCCCGGATATAA
* * *
70966393 CACCAGCACGAATGCCT-TCAGGAC-TTAGCCCGGATATAA
1 CACCAGCAC-AAAGCATGCCA-GACTTTAGCCCGGATATAA
70966432 TTCTCCATTA
Statistics
Matches: 136, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 106 0.78
40 30 0.22
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.18
Consensus pattern (39 bp):
CACCAGCACAAAGCATGCCAGACTTTAGCCCGGATATAA
Found at i:70966320 original size:39 final size:39
Alignment explanation
Indices: 70966263--70966431 Score: 236
Period size: 39 Copynumber: 4.3 Consensus size: 39
70966253 CCAGACTTTA
*
70966263 AGCCCGGATATAATACCAGCAC-AAAGCCTGT-GGGACTTT
1 AGCCCGGATATAACACCAGCACGAAAGCCT-TCGGGAC-TT
*
70966302 AGCCCGGATATAACACCAGCAC-AAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAAA-GCCTTCGGGACTT
* *
70966341 AACCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCGGGACTT
* *
70966380 AGCCCGGATATAACACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCGGGACTT
70966419 AGCCCGGATATAA
1 AGCCCGGATATAA
70966432 TTCTCCATTA
Statistics
Matches: 120, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
39 110 0.92
40 10 0.08
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAAAGCCTTCGGGACTT
Found at i:70972921 original size:39 final size:39
Alignment explanation
Indices: 70972827--70973005 Score: 245
Period size: 39 Copynumber: 4.5 Consensus size: 39
70972817 ACAAAGCAAG
* * *
70972827 CGGGACTTTAAGCCCGGATATAATACCATCAC-AAAGCCTGT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCT-T
70972868 -GGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
70972907 CGGGACTTAACCCGGATATAACACTAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
70972946 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
**
70972985 TAGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
70973006 TGCCCCATTA
Statistics
Matches: 127, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
39 108 0.85
40 19 0.15
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Done.