Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 113035596
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113035596
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 271 characters in sequence are not A, C, G, or T
File 24 of 378
Found at i:6064722 original size:11 final size:13
Alignment explanation
Indices: 6064692--6064723 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
6064682 TTATTATAAT
6064692 TTATTATTGTTAC
1 TTATTATTGTTAC
6064705 TTATTATT-TTAC
1 TTATTATTGTTAC
6064717 -TATTATT
1 TTATTATT
6064724 ATCTAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.37
12 4 0.21
13 8 0.42
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (13 bp):
TTATTATTGTTAC
Found at i:6064960 original size:22 final size:22
Alignment explanation
Indices: 6064930--6064990 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
6064920 TTATTATATC
*
6064930 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
6064952 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
6064974 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
6064991 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:6064964 original size:3 final size:3
Alignment explanation
Indices: 6064680--6064945 Score: 129
Period size: 3 Copynumber: 89.3 Consensus size: 3
6064670 TTCTCATCAC
* * *
6064680 TAT TAT TAT AATT TAT TAT TGT TACT TAT TAT T-T TAC TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
6064726 CTAA TA- TAT CAT CAT TAT CAT TAT T-T TCAT TAT AACT TAA TA- GAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
* * *
6064771 CAT CAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
6064819 TAT TAT TAT TAT TAT TAT TAG CAC TACT T-T TAT TAC TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * * ** * * * *
6064863 AAT ATAT TAT TTT TAC TAT TAT CGT CA- TAT TGT TAC TAT TAC TAT
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
6064908 TA- TAT TAT TA- TGT TAT TA- TAT CTTT TAC TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT T
6064946 GTTGTATTTT
Statistics
Matches: 199, Mismatches: 46, Indels: 36
0.71 0.16 0.13
Matches are distributed among these distances:
2 16 0.08
3 167 0.84
4 16 0.08
ACGTcount: A:0.32, C:0.08, G:0.02, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:6065191 original size:29 final size:29
Alignment explanation
Indices: 6065155--6065215 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
6065145 CATTATTTCC
6065155 CTTTCTTATTATTTATTCGATTCATTTAT
1 CTTTCTTATTATTTATTCGATTCATTTAT
6065184 CTTTCTTATTATTTATTCGATTCATTTAT
1 CTTTCTTATTATTTATTCGATTCATTTAT
6065213 CTT
1 CTT
6065216 ACCTTCGTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.20, C:0.15, G:0.03, T:0.62
Consensus pattern (29 bp):
CTTTCTTATTATTTATTCGATTCATTTAT
Found at i:6078006 original size:50 final size:51
Alignment explanation
Indices: 6077930--6078027 Score: 144
Period size: 50 Copynumber: 1.9 Consensus size: 51
6077920 CACGCTGAGG
**
6077930 TATTTTTAGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTT
1 TATTTTTAGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTT
* * *
6077981 TATTTTT-GTTTTTAATCAACTCATATTGCTAGAGGTGAGTTGAGCCT
1 TATTTTTAGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
6078028 CGGGGCACGC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 35 0.83
51 7 0.17
ACGTcount: A:0.24, C:0.11, G:0.19, T:0.45
Consensus pattern (51 bp):
TATTTTTAGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTT
Found at i:6078087 original size:72 final size:71
Alignment explanation
Indices: 6077982--6078139 Score: 239
Period size: 72 Copynumber: 2.2 Consensus size: 71
6077972 AAGCCTTTTT
* *
6077982 ATTTTTGTTTTTAA--TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTA
1 ATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTA
6078045 TTTTCA
66 TTTTCA
* *
6078051 ATTTTTGTGTTTTAATTTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGT
1 ATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT
6078116 ATTTTCA
65 ATTTTCA
* *
6078123 ATTTCTGTTTTCAATTT
1 ATTTTTGTTTTTAATTT
6078140 ACGTTGTTCA
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
69 8 0.10
70 6 0.08
71 8 0.10
72 58 0.73
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.42
Consensus pattern (71 bp):
ATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTA
TTTTCA
Found at i:6078248 original size:140 final size:140
Alignment explanation
Indices: 6078073--6078699 Score: 1130
Period size: 140 Copynumber: 4.5 Consensus size: 140
6078063 TAATTTCAAT
6078073 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
6078138 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
66 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
6078203 CAAAATCAGC
131 CAAAATCAGC
6078213 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
* * *
6078278 TTATGTTGTTCAAGAATCAACTCATATTACGAGAGGTGGGTTGAACCTTTTATTTTCTACTTTTT
66 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
6078343 CAAAATCAGC
131 CAAAATCAGC
* *
6078353 TCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAAT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
* * *
6078418 TTACATTGTTTAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTTT
66 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
6078483 CAAAATCAGC
131 CAAAATCAGC
6078493 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
*
6078558 TTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
66 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
6078623 CAAAATCAGC
131 CAAAATCAGC
6078633 TCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TTT
6078697 CAA
62 CAA
6078700 AAAAAAAAAT
Statistics
Matches: 466, Mismatches: 17, Indels: 5
0.95 0.03 0.01
Matches are distributed among these distances:
139 2 0.00
140 435 0.93
142 23 0.05
143 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
CAAAATCAGC
Found at i:6078275 original size:13 final size:13
Alignment explanation
Indices: 6078257--6078290 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
6078247 CGCTGAGGTA
*
6078257 TTTTCAATTTCTG
1 TTTTCAATTTATG
6078270 TTTTCAATTTATG
1 TTTTCAATTTATG
6078283 TTGTTCAA
1 TT-TTCAA
6078291 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:6078555 original size:13 final size:13
Alignment explanation
Indices: 6078537--6078570 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
6078527 CGCTGAGGTA
*
6078537 TTTTCAATTTCTG
1 TTTTCAATTTATG
6078550 TTTTCAATTTATG
1 TTTTCAATTTATG
6078563 TTGTTCAA
1 TT-TTCAA
6078571 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:6078822 original size:72 final size:72
Alignment explanation
Indices: 6078705--6078845 Score: 273
Period size: 72 Copynumber: 2.0 Consensus size: 72
6078695 TTCAAAAAAA
*
6078705 AAAATTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
6078770 TGTTTTC
66 TGTTTTC
6078777 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
6078842 TGTT
66 TGTT
6078846 CAAAATGAGT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:6078856 original size:49 final size:49
Alignment explanation
Indices: 6078799--6078894 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
6078789 ATATTGCGAG
* *
6078799 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTCTGTTCA
6078848 AAATGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTCTGTT
6078895 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTCTGTTCA
Found at i:6078941 original size:121 final size:121
Alignment explanation
Indices: 6078727--6078966 Score: 426
Period size: 121 Copynumber: 2.0 Consensus size: 121
6078717 ATATTGCGAG
* *
6078727 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
*
6078792 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
6078848 AAATGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
6078913 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
6078967 TTTCAAAAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 113 1.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:6079008 original size:78 final size:76
Alignment explanation
Indices: 6078848--6079200 Score: 452
Period size: 75 Copynumber: 4.7 Consensus size: 76
6078838 TTTCTGTTCA
* * *
6078848 AAATGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTCTG-TTTTC---AAAATTCAACT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAATCAACT
6078909 CATATTGCGAG
66 CATATTGCGAG
* *
6078920 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC--AAAAAAAATCAA
*
6078985 CTCATATTGTGAG
64 CTCATATTGCGAG
*
6078998 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTT-AAAAAAAATCAACT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAATCAACT
6079062 CATATTGCGAG
66 CATATTGCGAG
** * *
6079073 AGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTGTC-AAAAAAATCAACT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAATCAACT
* *
6079136 CGTATTGTGAG
66 CATATTGCGAG
*** * *
6079147 AGGCGAGTTGAGCCTCAAGTCACACGCCGA-GTATTTTCAATTTCTATTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
6079201 TTTCTGCCTT
Statistics
Matches: 250, Mismatches: 20, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
72 41 0.16
73 5 0.02
74 43 0.17
75 79 0.32
76 12 0.05
77 1 0.00
78 69 0.28
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (76 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAATCAACT
CATATTGCGAG
Found at i:6079320 original size:77 final size:77
Alignment explanation
Indices: 6079194--6079787 Score: 322
Period size: 79 Copynumber: 7.2 Consensus size: 77
6079184 CAATTTCTAT
** * *
6079194 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTAAGCCTTGGCT
1 TTTTCAATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
* *
6079259 CACGCGCTGAGCTA
64 CACACACTGAGCTA
* * *
6079273 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
*
6079337 ACACACTGAGGTA
65 ACACACTGAGCTA
* * * * * *
6079350 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
** *
6079415 CACA-TGTCGAGGTA
64 CACACACT-GAGCTA
** *
6079429 TTTTCAAAATCTGTTTTTCAAATTTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTTCAATTTCTGTTTTTC-AA---------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* **
6079494 CATTGGCTCACGTACTGAGCTA
56 CCTTGGCTCACACACTGAGCTA
* *
6079516 TTTTCAA-TTCTTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGATGTGAGTTGAGCTTT
1 TTTTCAATTTC-TG----TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--C
*** * * *
6079580 TTAATTTCTACGAGAGTTGAGTTGA
58 TT-GGCTC-AC-ACA-CTGAGCT-A
* * * **
6079605 GTCTTTTAATTCCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-
1 -T-TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
* * *
6079667 TTACATA-TCGAGGTA
63 TCACACACT-GAGCTA
*
6079682 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTC--AA------TTTC-TGTT---TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* *
6079746 AGCCTTGGCTCACGCGCTGAGCTA
54 AGCCTTGGCTCACACACTGAGCTA
*
6079770 TTTTCGATTTCTGTTTTT
1 TTTTCAATTTCTGTTTTT
6079788 AATGTCTGTT
Statistics
Matches: 402, Mismatches: 64, Indels: 101
0.71 0.11 0.18
Matches are distributed among these distances:
75 3 0.01
76 7 0.02
77 66 0.16
78 7 0.02
79 85 0.21
80 8 0.02
81 6 0.01
82 31 0.08
83 3 0.01
84 33 0.08
85 7 0.02
86 5 0.01
87 66 0.16
88 55 0.14
89 2 0.00
90 3 0.01
91 13 0.03
92 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CACACTGAGCTA
Found at i:6079466 original size:243 final size:241
Alignment explanation
Indices: 6079021--6079787 Score: 841
Period size: 243 Copynumber: 3.1 Consensus size: 241
6079011 CTCAAGACAT
* *
6079021 GCTGAGGTATTTTCAATTTCTGTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 GCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * * * * * * *
6079086 CTCAA-GACACGCTGAGGTA-ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAG
66 TTCAATCACACACTGAGGTATTTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGAG
* * * ** * * *
6079149 GCGAGTTGAGCCTCAAGTCACACGCCGA-GTATTTTCAATTTCTATTTTTCAATTTCTGCCTTTC
131 GTGAGTTGAGCCTCAAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTATG--TTTC
* *
6079213 AAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGC
194 ---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
*
6079264 GCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 GCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
6079329 TTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGA
66 TTCA-ATCACACACTGAGGTA-TTTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGA
* **
6079394 GATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATT-TGTTT
128 GAGGTGAGTTGAGCCTCAAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTATG-TT
* * *
6079458 TC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCATTGGCTCACGT
192 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
* *
6079507 ACTGAGCTATTTTCAA-TTCTTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGATGTGAG
1 GCTGAGCTATTTTCAATTTC-TG----TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAG
* * * * *
6079571 TTGAGCTTTTTAATTTCTACGAGAGTTGAGTTGAGTCTTTT-AATTCCTGTTTTTC--AAAAATC
60 TTGAGC--TTCAA--TC-AC-ACA-CTGAGGT-A-T-TTTTCAATTTCT-TTTTTCAAAAAAATC
* * * * *
6079633 AACTCATATTGCGAGAGGTGAGTTGAACCTCCAGTTACATATCGAGGTATTTTCAAAATCTGCTT
114 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATGTCGAGGTATTTTCAAAATCTGTTT
* *
6079698 TTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
179 TTCAAATTATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
*
6079761 GCTGAGCTATTTTCGATTTCTGTTTTT
1 GCTGAGCTATTTTCAATTTCTGTTTTT
6079788 AATGTCTGTT
Statistics
Matches: 445, Mismatches: 55, Indels: 41
0.82 0.10 0.08
Matches are distributed among these distances:
242 3 0.01
243 124 0.28
244 1 0.00
245 12 0.03
247 26 0.06
248 80 0.18
249 24 0.05
250 8 0.02
251 2 0.00
252 2 0.00
253 77 0.17
254 66 0.15
255 16 0.04
256 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (241 bp):
GCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
TTCAATCACACACTGAGGTATTTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGAG
GTGAGTTGAGCCTCAAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTATGTTTCAA
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
Found at i:6080481 original size:25 final size:24
Alignment explanation
Indices: 6080444--6080509 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
6080434 CCCTCCCCCC
*
6080444 AAAA-AAAAAACCTATCCAAAAAAA
1 AAAAGAAAAAACCTAACC-AAAAAA
***
6080468 AAAAGAAAAAACCTAACCCCCAAA
1 AAAAGAAAAAACCTAACCAAAAAA
6080492 AAAAGAAAAAACCTAACC
1 AAAAGAAAAAACCTAACC
6080510 CCCAAAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 25 0.68
25 12 0.32
ACGTcount: A:0.68, C:0.23, G:0.03, T:0.06
Consensus pattern (24 bp):
AAAAGAAAAAACCTAACCAAAAAA
Found at i:6080530 original size:26 final size:24
Alignment explanation
Indices: 6080465--6080519 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
6080455 CTATCCAAAA
6080465 AAAAAAAGAAAAAACCTAACCCCC
1 AAAAAAAGAAAAAACCTAACCCCC
6080489 AAAAAAAGAAAAAACCTAACCCCC
1 AAAAAAAGAAAAAACCTAACCCCC
6080513 AAAAAAA
1 AAAAAAA
6080520 ACCAAGAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.67, C:0.25, G:0.04, T:0.04
Consensus pattern (24 bp):
AAAAAAAGAAAAAACCTAACCCCC
Found at i:6081086 original size:39 final size:39
Alignment explanation
Indices: 6081014--6081088 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
6081004 TTTATATATA
* * *
6081014 TTATGTATATATTTTTTAATGCCATTAGTTATATATTTC
1 TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
*
6081053 TTATGTATATATTCTTAAATACTATTA-TATATATAT
1 TTATGTATATATTCTTAAATACCATTAGT-TATATAT
6081089 ATATATTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.03
39 30 0.97
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (39 bp):
TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
Found at i:6081200 original size:2 final size:2
Alignment explanation
Indices: 6081188--6081237 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
6081178 ATTTATGTAC
* *
6081188 AT AT GT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6081230 AT AT AT AT
1 AT AT AT AT
6081238 TTGTACATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6081288 original size:15 final size:15
Alignment explanation
Indices: 6081268--6081297 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6081258 ATTATTGTTG
6081268 TATATTTTTTATGTA
1 TATATTTTTTATGTA
6081283 TATATTTTTTATGTA
1 TATATTTTTTATGTA
6081298 CGTTTCTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (15 bp):
TATATTTTTTATGTA
Found at i:6081355 original size:37 final size:37
Alignment explanation
Indices: 6081313--6081412 Score: 91
Period size: 37 Copynumber: 2.6 Consensus size: 37
6081303 CTAATATTTT
6081313 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
6081350 CTTTTATTATATGCATA-TATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATATTAT-TAT-TATTATTATGTACATA
*
6081391 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
6081413 CCAAATATAT
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 16 0.30
38 7 0.13
39 6 0.11
40 11 0.21
41 11 0.21
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:6084304 original size:22 final size:21
Alignment explanation
Indices: 6084267--6084309 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
6084257 AAATATATAA
*
6084267 AATGTATATAAAAAAACATAT
1 AATGTATATAAAAAAAAATAT
6084288 AATG-ATATAATATAAAAAATAT
1 AATGTATATAA-A-AAAAAATAT
6084310 TTTTATACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 6 0.32
21 5 0.26
22 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (21 bp):
AATGTATATAAAAAAAAATAT
Found at i:6084401 original size:22 final size:22
Alignment explanation
Indices: 6084354--6084413 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
6084344 CTTTCTTTTT
*
6084354 TAAAAAAATAT-TAATACAATA
1 TAAAATAATATATAATACAATA
* *
6084375 T-AAATAATATATAATGCCATA
1 TAAAATAATATATAATACAATA
6084396 TAAAATAATATAATAATA
1 TAAAATAATAT-ATAATA
6084414 TATAATATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 8 0.25
21 10 0.31
22 9 0.28
23 5 0.16
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (22 bp):
TAAAATAATATATAATACAATA
Found at i:6084416 original size:20 final size:20
Alignment explanation
Indices: 6084354--6084423 Score: 56
Period size: 20 Copynumber: 3.4 Consensus size: 20
6084344 CTTTCTTTTT
*
6084354 TAAAAAAATATTAATACA-ATA
1 TAAAATAATA-TAATA-ATATA
6084375 T-AAATAATAT-ATAATGCCATA
1 TAAAATAATATAATAAT---ATA
6084396 TAAAATAATATAATAATATA
1 TAAAATAATATAATAATATA
*
6084416 TAATATAA
1 TAAAATAA
6084424 AAAATAAATG
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
17 1 0.02
18 3 0.07
19 1 0.02
20 17 0.41
21 5 0.12
22 9 0.22
23 5 0.12
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.33
Consensus pattern (20 bp):
TAAAATAATATAATAATATA
Found at i:6084427 original size:27 final size:29
Alignment explanation
Indices: 6084371--6084430 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
6084361 ATATTAATAC
*
6084371 AATATAAATAATATATAATGCCATATAAAAT
1 AATATAAATAATATATAAT--CATAAAAAAT
6084402 AATAT-AATAATATATAAT-ATAAAAAAT
1 AATATAAATAATATATAATCATAAAAAAT
6084429 AA
1 AA
6084431 ATGTATTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 10 0.36
30 13 0.46
31 5 0.18
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (29 bp):
AATATAAATAATATATAATCATAAAAAAT
Found at i:6088022 original size:20 final size:20
Alignment explanation
Indices: 6087997--6088055 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
6087987 TAAATATGGT
6087997 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
6088017 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
6088037 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
6088056 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:6088132 original size:24 final size:24
Alignment explanation
Indices: 6088106--6088200 Score: 115
Period size: 24 Copynumber: 4.0 Consensus size: 24
6088096 GAGGAAGTGA
*
6088106 AAAAGGGATTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
6088129 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
6088153 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
6088177 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
6088201 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
23 22 0.35
24 30 0.48
25 11 0.17
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:6091995 original size:20 final size:19
Alignment explanation
Indices: 6091954--6092002 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
6091944 CATTAAGCCC
*
6091954 AAAAAAAACCTAACCTAAA
1 AAAAAAAACCTAACCCAAA
**
6091973 AAAAAAAACCTAACCCCCCA
1 AAAAAAAACCTAA-CCCAAA
6091993 AAAAAAAACC
1 AAAAAAAACC
6092003 AAGAAACCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.65, C:0.29, G:0.00, T:0.06
Consensus pattern (19 bp):
AAAAAAAACCTAACCCAAA
Found at i:6092330 original size:6 final size:6
Alignment explanation
Indices: 6092319--6092352 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
6092309 CTTTCTTTTT
* *
6092319 ATATAC ATATAC ATATAC ATATAT ATATAT ATAT
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATAT
6092353 TAAAAAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (6 bp):
ATATAC
Found at i:6093035 original size:11 final size:11
Alignment explanation
Indices: 6093011--6093055 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
6093001 TTCTAATACG
*
6093011 TATATATATAT
1 TATATATATTT
*
6093022 TATATGTATTT
1 TATATATATTT
*
6093033 TATATATATTA
1 TATATATATTT
*
6093044 TGTATATATTT
1 TATATATATTT
6093055 T
1 T
6093056 TTTATTGCAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (11 bp):
TATATATATTT
Found at i:6105517 original size:150 final size:146
Alignment explanation
Indices: 6105277--6106245 Score: 1111
Period size: 150 Copynumber: 6.6 Consensus size: 146
6105267 TGTTACTTCC
* ** * **
6105277 GTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTT
1 GTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATT
* * * **
6105340 TCAATTTAT-TTTTCAAAAATCAACTCATATTGCGA-AAGGTGAGTTGAGCCTCAAGACTTGCTG
66 TCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAA-ATGAGTTGAGCCTCAAGACACGCTG
*
6105403 AGGTATTTTCAATTTCT
130 AGGTAATTTCAATTTCT
* *
6105420 GTCTTTCAAAAAAAAATTCAACTCATGTTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 GT-TTTC--AAAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
*
6105485 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATG
62 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*
6105550 CTGAGGTATTTTCAATTTCT
127 CTGAGGTAATTTCAATTTCT
** *
6105570 GTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTA
1 G-TTTTC--AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA
* *
6105634 ATTTCAATTTCTGTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGT
63 ATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC
* *
6105699 TAAGGTATTTTCAATTTCT
128 TGAGGTAATTTCAATTTCT
* ** * *
6105718 GTTTTC--AAAAATCAACTCTTATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTA
1 GTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTA
* *
6105780 TTTTCAATTTCTGTGTTTCAAAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGAC
63 ATTTCAATTTCTGT-TTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
*
6105845 ACGTTGAGGTAATTTCAATTTCT
124 ACGCTGAGGTAATTTCAATTTCT
* * * *
6105868 ATTTTC--AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATT
1 GTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATT
* * **
6105931 TCAATTTCTATTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGA
66 TCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGA
6105996 GGTAATTTCAATTTCT
131 GGTAATTTCAATTTCT
* * * *
6106012 GTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAGGTATTT
1 GTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATT
* ** *
6106075 TCAATTTCTGTTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
66 TCAATTTCTG-----TTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
6106140 ACGCTGAGGTAATTTCAATTTCT
124 ACGCTGAGGTAATTTCAATTTCT
* * ** * * * *
6106163 GTTGTC-AAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCC-CAGGTCACACACCGAGGTAT
1 GTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCTGAGGTAA
*
6106226 TTTCAATTTCCTTTTTTCAA
64 TTTCAATTT-CTGTTTTCAA
6106246 TTTCTACCTT
Statistics
Matches: 733, Mismatches: 65, Indels: 52
0.86 0.08 0.06
Matches are distributed among these distances:
143 41 0.06
144 135 0.18
146 32 0.04
147 46 0.06
148 117 0.16
149 59 0.08
150 179 0.24
151 71 0.10
152 32 0.04
153 19 0.03
154 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (146 bp):
GTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATT
TCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGA
GGTAATTTCAATTTCT
Found at i:6105530 original size:72 final size:72
Alignment explanation
Indices: 6105285--6106245 Score: 1081
Period size: 72 Copynumber: 13.0 Consensus size: 72
6105275 CCGTTTTCAA
* * ** * ** *
6105285 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCAATTTA
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6105348 T-TTTTC
66 TGTTTTC
* * ** *
6105354 AAAAATCAACTCATATTGCGA-AAGGTGAGTTGAGCCTCAAGACTTGCTGAGGTATTTTCAATTT
1 AAAATTCAACTCATATTGCGAGAA-ATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
6105418 CTGTCTTTC
65 CTGT-TTTC
* *
6105427 AAAAAAAAATTCAACTCATGTTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 -----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
6105492 ATTTCTGTTTTC
61 ATTTCTGTTTTC
* *
6105504 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6105569 TGTTTTTC
66 TG-TTTTC
* ** *
6105577 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTCAA
1 ----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
6105641 TTTCTGTTTTC
62 TTTCTGTTTTC
* * * *
6105652 AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6105717 TGTTTTC
66 TGTTTTC
* * ** * * *
6105724 AAAAATCAACTCTTATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAAT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATTTCAAT
6105788 TTCTGTGTTTC
63 TTCTGT-TTTC
* *
6105799 AAAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAAT
1 ---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAAT
*
6105864 TTCTATTTTC
63 TTCTGTTTTC
* *
6105874 AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
*
6105939 TATTTTC
66 TGTTTTC
* **
6105946 AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6106011 TGTTTTC
66 TGTTTTC
* * *
6106018 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6106083 TGTTTTTTTTTC
66 TG-----TTTTC
* ** *
6106095 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 --AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
*
6106160 TCTGTTGTC
64 TCTGTTTTC
* * ** * * * *
6106169 AAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCC-CAGGTCACACACCGAGGTATTTTCAAT
1 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCTGAGGTAATTTCAAT
*
6106233 TTCCTTTTTTC
63 TT-CTGTTTTC
6106244 AA
1 AA
6106246 TTTCTACCTT
Statistics
Matches: 784, Mismatches: 73, Indels: 65
0.85 0.08 0.07
Matches are distributed among these distances:
68 1 0.00
69 36 0.05
71 54 0.07
72 333 0.42
73 45 0.06
74 50 0.06
75 19 0.02
76 48 0.06
77 44 0.06
78 91 0.12
79 63 0.08
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:6105902 original size:222 final size:219
Alignment explanation
Indices: 6105285--6106245 Score: 1178
Period size: 222 Copynumber: 4.3 Consensus size: 219
6105275 CCGTTTTCAA
* * *
6105285 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAG-AC--GCTGAGGTGTTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGCACATGCTGAGGTATTTTCAATTT
* * ** *
6105347 AT-TTTTCAAAAA-TCAACTCATATTGCGA-AAGGTGAGTTGAGCCTCAAGACTTGCTGAGGTAT
66 CTGTTTTCAAAAATTCAACTCATATTGCGAGAA-ATGAGTTGAGCCTCAAGACACGCTGAGGTAA
*
6105409 TTTCAATTTCTGTCTTTCAAAAAAAAATTCAACTCATGTTGCGAGAAATGAGTTGAGCCTCAAGA
130 TTTCAATTTCTGT-TTTC----AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
6105474 CACGTTGAGGTAATTTCAATTTCTGTTTTC
190 CACGTTGAGGTAATTTCAATTTCTGTTTTC
* **
6105504 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACATGCTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGCACATGCTGAGGTATTTTCAATTT
* ** *
6105568 CTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGG
66 CTG-TTTTC---AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
*
6105632 TAATTTCAATTTCTGTTTTC-AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACA
127 TAATTTCAATTTCTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
* *
6105696 CGTTAAGGTATTTTCAATTTCTGTTTTC
192 CGTTGAGGTAATTTCAATTTCTGTTTTC
* *
6105724 AAAAATCAACTCTTATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--CACATGCTGAGGTATTTTCAAT
* *
6105788 TTCTGTGTTTCAAAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
64 TTCTGT-TTTC--AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
* *
6105853 GTAATTTCAATTTCTATTTTC-AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGAC
126 GTAATTTCAATTTCTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
*
6105917 ACGTTGAGGTAATTTCAATTTCTATTTTC
191 ACGTTGAGGTAATTTCAATTTCTGTTTTC
* * ** *
6105946 AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACAT--TGAGGTAATTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-CACATGCTGAGGTATTTTCAATT
* * *
6106009 TCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAGGTAT
65 TCTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAA
* ** *
6106073 TTTCAATTTCTGTTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
130 TTTCAATTTCTG-----TTTTC-AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
* *
6106138 ACACGCTGAGGTAATTTCAATTTCTGTTGTC
189 ACACGTTGAGGTAATTTCAATTTCTGTTTTC
* * ** *
6106169 AAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCC-CAGGTCACACACCGAGGTATTTTCAAT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-CACATGCTGAGGTATTTTCAAT
*
6106233 TTCCTTTTTTCAA
64 TT-CTGTTTTCAA
6106246 TTTCTACCTT
Statistics
Matches: 651, Mismatches: 64, Indels: 46
0.86 0.08 0.06
Matches are distributed among these distances:
216 63 0.10
219 43 0.07
220 122 0.19
221 62 0.10
222 165 0.25
223 77 0.12
224 31 0.05
225 19 0.03
226 37 0.06
227 31 0.05
228 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (219 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGCACATGCTGAGGTATTTTCAATTT
CTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAAT
TTCAATTTCTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
GAGGTAATTTCAATTTCTGTTTTC
Found at i:6106367 original size:77 final size:78
Alignment explanation
Indices: 6106238--6106450 Score: 259
Period size: 79 Copynumber: 2.7 Consensus size: 78
6106228 TCAATTTCCT
* * * * *
6106238 TTTTTCAATTTCTACCTTTAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGC
1 TTTTTCAATTTCTATCTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGA
* **
6106302 TCACGCGTTGAGCTA
64 TCACACACTGAGCTA
* *
6106317 -TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCTTCAGATC
1 TTTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATC
*
6106381 ACACACTGAGGTA
66 ACACACTGAGCTA
* * *
6106394 TTTTTTCAATTTATATTTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAG
1 -TTTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
6106451 TTTTTTAATT
Statistics
Matches: 115, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
76 3 0.03
77 46 0.40
78 16 0.14
79 50 0.43
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36
Consensus pattern (78 bp):
TTTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATC
ACACACTGAGCTA
Found at i:6106469 original size:30 final size:30
Alignment explanation
Indices: 6106433--6106511 Score: 140
Period size: 30 Copynumber: 2.6 Consensus size: 30
6106423 TAACTCATAT
*
6106433 TGCGAGAGGTGAGTTGAGTTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
6106463 TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
*
6106493 TGTGAGAGGTGAGTTGAGC
1 TGCGAGAGGTGAGTTGAGC
6106512 CTCGAGTCAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.20, C:0.08, G:0.34, T:0.38
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
Found at i:6107211 original size:19 final size:19
Alignment explanation
Indices: 6107187--6107224 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
6107177 CATTAAGCCC
* *
6107187 CCCCCCCAAAAAAACCCAA
1 CCCCCCAAAAAAAAACCAA
6107206 CCCCCCAAAAAAAAACCAA
1 CCCCCCAAAAAAAAACCAA
6107225 GAAACCCTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.47, G:0.00, T:0.00
Consensus pattern (19 bp):
CCCCCCAAAAAAAAACCAA
Found at i:6107509 original size:20 final size:19
Alignment explanation
Indices: 6107476--6107532 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
6107466 TTGCATCTTT
6107476 TCTTTTTTCTTTTCTTTCGAA
1 TCTTTTTTC-TTTCTTTC-AA
*
6107497 TCTTTTTTCTTTCTTTCTA
1 TCTTTTTTCTTTCTTTCAA
*
6107516 TTTTCTTTTCTTTCTTT
1 TCTT-TTTTCTTTCTTT
6107533 TTATATACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 4 0.12
20 20 0.61
21 9 0.27
ACGTcount: A:0.05, C:0.19, G:0.02, T:0.74
Consensus pattern (19 bp):
TCTTTTTTCTTTCTTTCAA
Found at i:6107519 original size:16 final size:16
Alignment explanation
Indices: 6107474--6107534 Score: 61
Period size: 16 Copynumber: 3.6 Consensus size: 16
6107464 GTTTGCATCT
6107474 TTTCTTTTTTCTTTTC
1 TTTCTTTTTTCTTTTC
6107490 TTTCGAATCTTTTT-TCTTTC
1 TTTC---T-TTTTTCT-TTTC
*
6107510 TTTCTATTTTCTTTTC
1 TTTCTTTTTTCTTTTC
6107526 TTTCTTTTT
1 TTTCTTTTT
6107535 ATATACATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
16 20 0.54
17 2 0.05
19 2 0.05
20 13 0.35
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (16 bp):
TTTCTTTTTTCTTTTC
Found at i:6108399 original size:2 final size:2
Alignment explanation
Indices: 6108392--6108431 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
6108382 TTTTATGTAC
6108392 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6108432 TTTTTTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6110168 original size:31 final size:31
Alignment explanation
Indices: 6110133--6110196 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
6110123 CCTTTTCATA
*
6110133 TTTCATATTTGATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
6110164 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
6110195 TT
1 TT
6110197 ATTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:6110437 original size:25 final size:26
Alignment explanation
Indices: 6110409--6110520 Score: 102
Period size: 26 Copynumber: 4.3 Consensus size: 26
6110399 TTGGAGGCCT
6110409 AGCCTCTTTTA-AT-AACTGGGGCAAA
1 AGCC-CTTTTAGATAAACTGGGGCAAA
* *
6110434 AGCCCTTTTAGGTAAACTGGGGCATA
1 AGCCCTTTTAGATAAACTGGGGCAAA
* * *
6110460 AGCCCTTTTTGGTAAACTGGGGCATA
1 AGCCCTTTTAGATAAACTGGGGCAAA
* * * * * *
6110486 AGCCATTTTCGGTAAATTAGGGCATA
1 AGCCCTTTTAGATAAACTGGGGCAAA
6110512 AGCCCTTTT
1 AGCCCTTTT
6110521 TGCACTTCCT
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
24 6 0.08
25 5 0.06
26 66 0.86
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTAGATAAACTGGGGCAAA
Found at i:6110453 original size:26 final size:26
Alignment explanation
Indices: 6110422--6110520 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
6110412 CTCTTTTAAT
*
6110422 AACTGGGGCAAAAGCCCTTTTAGGTA
1 AACTGGGGCATAAGCCCTTTTAGGTA
*
6110448 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTAGGTA
* *
6110474 AACTGGGGCATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTAGGTA
* *
6110500 AATTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
6110521 TGCACTTCCT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 66 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTAGGTA
Found at i:6110597 original size:20 final size:20
Alignment explanation
Indices: 6110572--6110616 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
6110562 ATGAATACAA
*
6110572 CATGTGTATATCATA-CATAT
1 CATGTGCATATCATATCA-AT
*
6110592 CATGTGCATCTCATATCAAT
1 CATGTGCATATCATATCAAT
6110612 CATGT
1 CATGT
6110617 ATATCAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (20 bp):
CATGTGCATATCATATCAAT
Found at i:6110696 original size:25 final size:25
Alignment explanation
Indices: 6110654--6110702 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
6110644 TAATTAAACT
* * *
6110654 CTAGGGGTATAATGGTCATTTTCAC
1 CTAGGGGCAAAATAGTCATTTTCAC
6110679 CTAGGGGCAAAATAGTCATTTTCA
1 CTAGGGGCAAAATAGTCATTTTCA
6110703 TATTATAAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (25 bp):
CTAGGGGCAAAATAGTCATTTTCAC
Found at i:6126395 original size:31 final size:31
Alignment explanation
Indices: 6126360--6126423 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
6126350 CCTTTTCATA
*
6126360 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
* ** *
6126391 TTTCATATTTTATATTACTAGGTCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
6126422 TT
1 TT
6126424 ACTGTAAGCG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:6126679 original size:26 final size:26
Alignment explanation
Indices: 6126649--6126747 Score: 155
Period size: 26 Copynumber: 3.8 Consensus size: 26
6126639 ATCTTTTAAT
* * *
6126649 AACTGGGGCAAAAGCCCTTTTCGATA
1 AACTAGGGCATAAGCCCTTTTCGGTA
6126675 AACT-GAGGCATAAGCCCTTTTCGGTA
1 AACTAG-GGCATAAGCCCTTTTCGGTA
6126701 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCGGTA
6126727 AACTAGGGCATAAGCCCTTTT
1 AACTAGGGCATAAGCCCTTTT
6126748 TGCACTTCCT
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
25 1 0.01
26 67 0.97
27 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTAGGGCATAAGCCCTTTTCGGTA
Found at i:6126820 original size:20 final size:20
Alignment explanation
Indices: 6126797--6126844 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
6126787 TTATGAATAC
*
6126797 ATCATGTGCATATCATA-CA
1 ATCATGTACATATCATATCA
*
6126816 TATCATGTACATCTCATATCA
1 -ATCATGTACATATCATATCA
6126837 ATCATGTA
1 ATCATGTA
6126845 TATCAAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.35
Consensus pattern (20 bp):
ATCATGTACATATCATATCA
Found at i:6134804 original size:29 final size:29
Alignment explanation
Indices: 6134771--6134853 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
6134761 GTGTCGAGAT
6134771 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
6134800 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
6134829 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
6134854 AAAAAATACG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:6140899 original size:4 final size:4
Alignment explanation
Indices: 6140892--6140933 Score: 75
Period size: 4 Copynumber: 10.5 Consensus size: 4
6140882 ATATATATAT
*
6140892 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ACAG AT
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
6140934 TTGAAGAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.50, C:0.02, G:0.24, T:0.24
Consensus pattern (4 bp):
ATAG
Found at i:6142858 original size:44 final size:45
Alignment explanation
Indices: 6142761--6142918 Score: 137
Period size: 44 Copynumber: 3.6 Consensus size: 45
6142751 TGATCTACTT
* *
6142761 CATTGCAACTTCAAGGAGATAAGATCTGCTATCTTCAATCTGCTC
1 CATTGCAACTTCAGGGAGATAAGATCTGCTAACTTCAATCTGCTC
*
6142806 CACTGCAACTTCAGGGAGATAAGA-CTTG-TAACTTCAA-CTTGC-C
1 CATTGCAACTTCAGGGAGATAAGATC-TGCTAACTTCAATC-TGCTC
* * * ** * *
6142849 CTATTGCAACTTCAGGGGGATAAGTTTTG-TGGCTTTAATCTACTC
1 C-ATTGCAACTTCAGGGAGATAAGATCTGCTAACTTCAATCTGCTC
* * *
6142894 CACTACAACTTCAGAGAGATAAGAT
1 CATTGCAACTTCAGGGAGATAAGAT
6142919 TCACCATGGT
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
43 3 0.03
44 61 0.67
45 27 0.30
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (45 bp):
CATTGCAACTTCAGGGAGATAAGATCTGCTAACTTCAATCTGCTC
Found at i:6143372 original size:228 final size:226
Alignment explanation
Indices: 6142764--6143333 Score: 912
Period size: 228 Copynumber: 2.5 Consensus size: 226
6142754 TCTACTTCAT
* *
6142764 TGCAACTTCA-AGGAGATAAGA-TCTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
1 TGCAACTTCAGA-GAGATAAGATTC-GCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATA
** * * * *
6142827 AGACTTGTAACTTCAACTTGCCCTATTGCAACTTCAGGGGGATAAGTTTTGTGGCTTTAATCTAC
64 AGACTCATAACTTTAACTTGCCC-ACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATCTAC
6142892 TCCACTACAACTTCAGAGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCA
128 TCCACTACAACTTCAGAGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCA
*
6142957 GAGGTATAGGAATTATAGCTTTAATCTGCTCTAC
193 GAGGAATAGGAATTATAGCTTTAATCTGCTCTAC
*
6142991 TGCAACTTCAGAGAGATAAGATTCACTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAG
1 TGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAG
*
6143056 ACTCATAAGCTTTAACTTGCCCCACTGCAACTTCAAGGGA-ATAAGGTTTGTGGCTTCAATCTAC
66 ACTCATAA-CTTTAACTTG-CCCACTGCAACTTC-AGGGAGATAAGGTTTGTGGCTTTAATCTAC
* *
6143120 TCCACTACAACTTTAGGGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCA
128 TCCACTACAACTTCAGAGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCA
*
6143185 GAGGAATAGGATTTATAGCTTTAATCTGCTCTAC
193 GAGGAATAGGAATTATAGCTTTAATCTGCTCTAC
* * *
6143219 TGCAACTTTAGAGAGATAAGATTCGTTATCTTCAGTTTGCTTCACTGCAACTTCAGGGAGATAAG
1 TGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAG
6143284 ACTCATAACTTTAACTTGCCCACTGCAACTTCAGGGAGATAAGGTTTGTG
66 ACTCATAACTTTAACTTGCCCACTGCAACTTCAGGGAGATAAGGTTTGTG
6143334 TATTTTTATC
Statistics
Matches: 319, Mismatches: 18, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
225 5 0.02
226 26 0.08
227 73 0.23
228 208 0.65
229 7 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (226 bp):
TGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAG
ACTCATAACTTTAACTTGCCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATCTACTCC
ACTACAACTTCAGAGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCAGAG
GAATAGGAATTATAGCTTTAATCTGCTCTAC
Found at i:6143437 original size:89 final size:88
Alignment explanation
Indices: 6143173--6143461 Score: 248
Period size: 89 Copynumber: 3.2 Consensus size: 88
6143163 GATCCGACCT
* * * * * *
6143173 ACTGCAACTTCAGAG-GA-ATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTTAGAGAGAT
1 ACTGCAACTTCAGAGAGATA-AGGACTCATAACTTT-ATCTGCTCCACTGCAACTTCAGGGAGAT
*
6143236 AAGATTCGTTATCTTCAGTTTGCTTC
64 AAGATT-GTTATCTTCAGTCTGCTTC
* *
6143262 ACTGCAACTTCAGGGAGATAA-GACTCATAACTTTAACTTGC-CCACTGCAACTTCAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGGACTCATAACTTTATC-TGCTCCACTGCAACTTCAGGGAGATA
* * * *
6143325 AGGTTTGTGTATTTTTA-TCCTGCTTT
65 A-GATTGT-TATCTTCAGT-CTGCTTC
* * * *** *
6143351 ATTGCAACTTCAGAAAGATAAGGA-TTATGGTTTTGATCTGCTCCACTACAACTTCAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGGACTCATAACTTT-ATCTGCTCCACTGCAACTTCAGGGAGATA
* *
6143415 AGATCTGTCATCTTCAGTCTGCTCC
65 AGAT-TGTTATCTTCAGTCTGCTTC
*
6143440 ACTGCAACTTTAGAGAGATAAG
1 ACTGCAACTTCAGAGAGATAAG
6143462 ACTTGCTACT
Statistics
Matches: 158, Mismatches: 31, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
88 25 0.16
89 99 0.63
90 33 0.21
91 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (88 bp):
ACTGCAACTTCAGAGAGATAAGGACTCATAACTTTATCTGCTCCACTGCAACTTCAGGGAGATAA
GATTGTTATCTTCAGTCTGCTTC
Found at i:6143492 original size:44 final size:45
Alignment explanation
Indices: 6143388--6143492 Score: 117
Period size: 45 Copynumber: 2.4 Consensus size: 45
6143378 TGGTTTTGAT
* **
6143388 CTGCTCCACTACAACTTCAGGGAGATAAGATCTGTCATCTTCAGT
1 CTGCTCCACTACAACTTCAGAGAGATAAGATCTGTCATCTTCAAC
* *
6143433 CTGCTCCACTGCAACTTTAGAGAGATAAGA-CT-TGC-TACTTCAAC
1 CTGCTCCACTACAACTTCAGAGAGATAAGATCTGT-CAT-CTTCAAC
*
6143477 CTGCTCTACTACAACT
1 CTGCTCCACTACAACT
6143493 GCTTCACTGC
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
43 2 0.04
44 22 0.43
45 27 0.53
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (45 bp):
CTGCTCCACTACAACTTCAGAGAGATAAGATCTGTCATCTTCAAC
Found at i:6147816 original size:17 final size:17
Alignment explanation
Indices: 6147796--6147833 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
6147786 ATTTTTTATT
6147796 TTTTTATTTTTTTCGTA-
1 TTTTTATTTTTTT-GTAC
6147813 -TTTTATTTTTTTGTAC
1 TTTTTATTTTTTTGTAC
6147829 TTTTT
1 TTTTT
6147834 TGATCACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 3 0.16
16 12 0.63
17 4 0.21
ACGTcount: A:0.11, C:0.05, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTTTATTTTTTTGTAC
Found at i:6155485 original size:26 final size:26
Alignment explanation
Indices: 6155448--6155583 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
6155438 TGATACAAAT
* *
6155448 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6155474 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
6155500 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6155526 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6155552 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6155578 TGATAA
1 TGATAA
6155584 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:6157090 original size:26 final size:26
Alignment explanation
Indices: 6157061--6157113 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6157051 TTTACAGTTT
6157061 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
6157087 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
6157113 T
1 T
6157114 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:6159782 original size:52 final size:52
Alignment explanation
Indices: 6159697--6159798 Score: 152
Period size: 52 Copynumber: 2.0 Consensus size: 52
6159687 CTCTATTCCA
* *
6159697 CATGATATTGGTTTTGCAGAGGTTCGAGCGGATTGTACGAAGAATGTATACG
1 CATGATATTGGTTTTGCAAAGGTTCGAGCGGATTGTACGAAGAATATATACG
* *
6159749 CATGATATTGGTTTTGCAAAGGTTC-AGGTGGATTGTATGAAGAATATATA
1 CATGATATTGGTTTTGCAAAGGTTCGA-GCGGATTGTACGAAGAATATATA
6159799 TAAACATGAC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 1 0.02
52 44 0.98
ACGTcount: A:0.29, C:0.09, G:0.28, T:0.33
Consensus pattern (52 bp):
CATGATATTGGTTTTGCAAAGGTTCGAGCGGATTGTACGAAGAATATATACG
Found at i:6162100 original size:22 final size:23
Alignment explanation
Indices: 6162050--6162104 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 23
6162040 ATGGAAACAA
*
6162050 GAATAGATAAGAAACATAATAGAT
1 GAATA-ATAAGAAACATAAAAGAT
6162074 GAATAATAAGAAA-ATAAAAGTAT
1 GAATAATAAGAAACATAAAAG-AT
6162097 -AATAATAA
1 GAATAATAA
6162105 TTATAATACA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 14 0.48
23 10 0.34
24 5 0.17
ACGTcount: A:0.64, C:0.02, G:0.13, T:0.22
Consensus pattern (23 bp):
GAATAATAAGAAACATAAAAGAT
Found at i:6162226 original size:2 final size:2
Alignment explanation
Indices: 6162219--6162243 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6162209 CAATACTATG
6162219 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
6162244 GCATAAAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6162514 original size:3 final size:3
Alignment explanation
Indices: 6162499--6162676 Score: 101
Period size: 3 Copynumber: 58.3 Consensus size: 3
6162489 AAAGGTATGT
* * * * * *
6162499 ATA ATA TATA ATA ATA ATA ATG GTA ATT AGA ATA ATA ATA GTA ATG
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
6162545 ATA GTA CCA-A ATG ATA GTA TATA ATA ATA TTA ATA ATA AT- ATA ATA
1 ATA ATA --ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* ** * *
6162591 ATA ATA ATA ATA ATA ATA ATA ATG AGG ATA AAA ATA ATA ACA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
6162638 ATA TTA AGCA ACAA ATA ATA ATG ATA ATA GTA ATA ATA A
1 ATA ATA A-TA A-TA ATA ATA ATA ATA ATA ATA ATA ATA A
6162677 AGAAATGGGA
Statistics
Matches: 129, Mismatches: 38, Indels: 16
0.70 0.21 0.09
Matches are distributed among these distances:
2 5 0.04
3 114 0.88
4 10 0.08
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:6163793 original size:50 final size:52
Alignment explanation
Indices: 6163714--6163825 Score: 126
Period size: 50 Copynumber: 2.2 Consensus size: 52
6163704 TTAGAAGATA
6163714 GGTTTTGGGCTAAGGATTTAGTGGTTTTGGGTCTGA-GTCAAACGGGCTAGAG
1 GGTTTTGGGCTAAGGATTTAGTGGTTTTGGGT-TGAGGTCAAACGGGCTAGAG
* * * *
6163766 GGTTTTGGG-T-AGG-TTTAAGTCGG-TTTGGGTTTAGGTCAAATGGGTTATAG
1 GGTTTTGGGCTAAGGATTT-AGT-GGTTTTGGGTTGAGGTCAAACGGGCTAGAG
6163816 GGTTTTGGGC
1 GGTTTTGGGC
6163826 CCAAAAATTG
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
49 5 0.10
50 35 0.67
51 3 0.06
52 9 0.17
ACGTcount: A:0.17, C:0.07, G:0.39, T:0.37
Consensus pattern (52 bp):
GGTTTTGGGCTAAGGATTTAGTGGTTTTGGGTTGAGGTCAAACGGGCTAGAG
Found at i:6164267 original size:41 final size:41
Alignment explanation
Indices: 6164212--6164362 Score: 135
Period size: 44 Copynumber: 3.6 Consensus size: 41
6164202 CATCTTTGAT
* * *
6164212 CTGTTTCCCTACTGCTTAGGGTTTTAGATCTGTAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAATTCAAC
* * * *
6164253 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGT-CTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAA-GATC-T-GTAATTCAAC
* * *
6164297 CTGCT-CCACTACTGCTTAGGGAGATAAGATCTGCAATTCAAC
1 CTGTTACC-CTACTGCTTAGGG-GTTAAGATCTGTAATTCAAC
*
6164339 TTGTTACCCTACTGCTTAGGGGTT
1 CTGTTACCCTACTGCTTAGGGGTT
6164363 TAAGGTTCTT
Statistics
Matches: 85, Mismatches: 17, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
41 23 0.27
42 24 0.28
43 10 0.12
44 25 0.29
45 3 0.04
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (41 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAATTCAAC
Found at i:6164310 original size:85 final size:86
Alignment explanation
Indices: 6164167--6164496 Score: 461
Period size: 85 Copynumber: 3.9 Consensus size: 86
6164157 TAATTTCCAG
* * * * * *
6164167 CCTGTTACCCTACTGTTTAGGGGATTAAGGCTT-GTCATCTTTGATCTGTTTCC-CTACTGCTTA
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-CTCCACTACTGCTTA
** * *
6164230 GGG-TTTTAGATCTGTAATTCAA
64 GGGAGATAAGATCTGCAATTCAA
6164252 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
6164317 GAGATAAGATCTGCAATTCAA
66 GAGATAAGATCTGCAATTCAA
*
6164338 CTTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCT-CACTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
***
6164402 GAGATAAGATCTGCAATTTGG
66 GAGATAAGATCTGCAATTCAA
* * *
6164423 TCTGTTTCCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
6164488 GAGATAAGA
66 GAGATAAGA
6164497 CCCTATAAAC
Statistics
Matches: 223, Mismatches: 18, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
84 5 0.02
85 131 0.59
86 87 0.39
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (86 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTGCAATTCAA
Found at i:6164356 original size:86 final size:86
Alignment explanation
Indices: 6164169--6164539 Score: 455
Period size: 85 Copynumber: 4.3 Consensus size: 86
6164159 ATTTCCAGCC
* * * * * *
6164169 TGTTACCCTACTGTTTAGGGGATTAAGGCTT-GTCATCTTTGATCTGTTTCC-CTACTGCTTAGG
1 TGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-CTCCACTACTGCTTAGG
** * * *
6164232 G-TTTTAGATCTGTAATTCAACC
64 GAGATAAGATCTGCAATTCAACT
6164254 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
6164319 GATAAGATCTGCAATTCAACT
66 GATAAGATCTGCAATTCAACT
6164340 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCT-CACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
***
6164404 GATAAGATCTGCAATT-TGGT
66 GATAAGATCTGCAATTCAACT
* *
6164424 CTGTTTCCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 -TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* ** * *
6164489 AGATAAGACCCTATAAACATCAGCT
65 AGATAAGA-TCT-GCAA-TTCAACT
*
6164514 TGTTACCCTACTGCTTAGGGGGTTAA
1 TGTTACCCTACTGCTTAGGGGTTTAA
6164540 AGCTTGGTGG
Statistics
Matches: 253, Mismatches: 24, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
84 6 0.02
85 129 0.51
86 87 0.34
87 2 0.01
88 2 0.01
89 25 0.10
90 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (86 bp):
TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
GATAAGATCTGCAATTCAACT
Found at i:6164459 original size:171 final size:174
Alignment explanation
Indices: 6164169--6164545 Score: 485
Period size: 171 Copynumber: 2.2 Consensus size: 174
6164159 ATTTCCAGCC
* * * * *
6164169 TGTTACCCTACTGTTTAGGGGATTAAGGCTTGTCATCTTTGATCTGTTTCCCTACTGCTTAGGGT
1 TGTTACCCTACTGCTTAGGGGATTAAGGCTTGTCATCTTCGATCTGTCTCACTACTGCTTAGGGG
* * * *
6164234 TTTAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCT
66 ATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTCGATCT
* * *
6164299 GCTCCACTACTGCTTAGGGAGATAAGA-TCT-GCAA-TTCAACT
131 GCTCCACTACTGCTTAGGGAGATAAGACCCTAGAAACATCAACT
* * *
6164340 TGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-CTCACTACTGCTTAGGG
1 TGTTACCCTACTGCTTAGGGGATTAAGGCTT-GTCATCTTCGATCTGTCTCACTACTGCTTAGGG
**** *
6164403 AGATAAGATCTGCAATTTGGTCTGTTTCCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTCGAT
65 -GATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTCGAT
* *
6164468 CTGCTCCACTACTGCTTAGGGAGATAAGACCCTATAAACATCAGCT
129 CTGCTCCACTACTGCTTAGGGAGATAAGACCCTAGAAACATCAACT
* *
6164514 TGTTACCCTACTGCTTAGGGGGTTAAAGCTTG
1 TGTTACCCTACTGCTTAGGGGATTAAGGCTTG
6164546 GTGGTTTGAA
Statistics
Matches: 175, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
170 17 0.10
171 121 0.69
172 2 0.01
173 2 0.01
174 31 0.18
175 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (174 bp):
TGTTACCCTACTGCTTAGGGGATTAAGGCTTGTCATCTTCGATCTGTCTCACTACTGCTTAGGGG
ATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGATTCTTCGTCTTCGATCT
GCTCCACTACTGCTTAGGGAGATAAGACCCTAGAAACATCAACT
Found at i:6165557 original size:9 final size:9
Alignment explanation
Indices: 6165543--6165575 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
6165533 TGGCCTCTTC
6165543 TTTTTTTTA
1 TTTTTTTTA
6165552 --TTTTTTA
1 TTTTTTTTA
6165559 TTTTTTTTA
1 TTTTTTTTA
6165568 TTTTTTTT
1 TTTTTTTT
6165576 TAGGCGAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.32
9 15 0.68
ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:6165564 original size:16 final size:16
Alignment explanation
Indices: 6165543--6165573 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
6165533 TGGCCTCTTC
6165543 TTTTTTTTATTTTTTA
1 TTTTTTTTATTTTTTA
6165559 TTTTTTTTATTTTTT
1 TTTTTTTTATTTTTT
6165574 TTTAGGCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (16 bp):
TTTTTTTTATTTTTTA
Found at i:6169595 original size:15 final size:14
Alignment explanation
Indices: 6169553--6169602 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
6169543 ATAACTTTGA
*
6169553 ATGCAAATGATGTG
1 ATGCAAATGATGAG
6169567 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
6169582 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
6169596 ATGCAAA
1 ATGCAAA
6169603 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:6173264 original size:22 final size:20
Alignment explanation
Indices: 6173236--6173283 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
6173226 TCGAATAAAT
*
6173236 AATAAGAAAGATAAATGAATCG
1 AATAAGAAAGAGAAAT-AAT-G
*
6173258 AATAAGAAAGGGAAATAATG
1 AATAAGAAAGAGAAATAATG
6173278 AATAAG
1 AATAAG
6173284 CTAAATGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 7 0.29
21 3 0.12
22 14 0.58
ACGTcount: A:0.60, C:0.02, G:0.21, T:0.17
Consensus pattern (20 bp):
AATAAGAAAGAGAAATAATG
Found at i:6173483 original size:3 final size:3
Alignment explanation
Indices: 6173477--6173721 Score: 87
Period size: 3 Copynumber: 82.3 Consensus size: 3
6173467 AAAATACAAC
* * * *
6173477 AAT AAT AAT AGT AA- AAG ATAT AAT AA- CAT AAT AAT -AT AAT AGT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
6173520 AAT AGT AAC AAT -AT GAC GAT AAT AGT AAA AAT AAT -AT ATT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * **
6173564 AAT AGT AAT AA- AAGT AGT GTT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
6173609 AAT AAT AAT AAT AAT GAT GAT GAT -CT ATT AAGT TAT AAT GAA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT -AAT AAT
* * * * *
6173654 AAT GAT AAT GAT GAT -AT ATT AGAT AAT AAT AGT AA- AAT AAT AAGT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AA-T
* *
6173699 AAC AAT AAT AAAT TAT AAT AAT A
1 AAT AAT AAT -AAT AAT AAT AAT A
6173722 GTGATGAGAA
Statistics
Matches: 180, Mismatches: 44, Indels: 36
0.69 0.17 0.14
Matches are distributed among these distances:
2 18 0.10
3 145 0.81
4 17 0.09
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6173483 original size:22 final size:22
Alignment explanation
Indices: 6173432--6173492 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
6173422 ATAAGTAAAT
* *
6173432 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
6173453 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
6173475 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
6173493 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:6173655 original size:36 final size:36
Alignment explanation
Indices: 6173584--6173696 Score: 101
Period size: 36 Copynumber: 3.2 Consensus size: 36
6173574 AAAGTAGTGT
* *
6173584 TAATAATAATAAT-A-ATAATA-ATAATAAT-AATAA
1 TAATAATAATGATGATATATTAGATAATAATGAA-AA
* * *
6173617 TAATAATGATGATGATCTATTA-AGTTATAATGAAAA
1 TAATAATAATGATGATATATTAGA-TAATAATGAAAA
*
6173653 TAATGATAATGATGATATATTAGATAATAATAGTAAAA
1 TAATAATAATGATGATATATTAGATAATAAT-G-AAAA
6173691 TAATAA
1 TAATAA
6173697 GTAACAATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
33 11 0.17
34 1 0.02
35 5 0.08
36 33 0.52
37 4 0.06
38 9 0.14
ACGTcount: A:0.56, C:0.01, G:0.09, T:0.35
Consensus pattern (36 bp):
TAATAATAATGATGATATATTAGATAATAATGAAAA
Found at i:6173740 original size:16 final size:16
Alignment explanation
Indices: 6173721--6173752 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6173711 TTATAATAAT
6173721 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
6173737 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
6173753 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:6173885 original size:16 final size:15
Alignment explanation
Indices: 6173856--6173898 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
6173846 TATACGTATG
*
6173856 AAAAATAATGATAGT
1 AAAAATAATAATAGT
6173871 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
6173887 AATAATAATAAT
1 AAAAATAATAAT
6173899 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:6174001 original size:3 final size:3
Alignment explanation
Indices: 6173993--6174025 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
6173983 ACACTACCAT
6173993 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6174026 TAGAAATACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6174127 original size:3 final size:3
Alignment explanation
Indices: 6174119--6174156 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
6174109 AAATATACAC
6174119 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
6174157 TTAAAATGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:6174664 original size:24 final size:24
Alignment explanation
Indices: 6174635--6174685 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
6174625 AAAAAAAAAG
6174635 AAAAATCCCCTCTTGAATCTCAAA
1 AAAAATCCCCTCTTGAATCTCAAA
* *
6174659 AAAAATCTCTTCTTGAATCTCAAA
1 AAAAATCCCCTCTTGAATCTCAAA
6174683 AAA
1 AAA
6174686 TTTCTTCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.45, C:0.24, G:0.04, T:0.27
Consensus pattern (24 bp):
AAAAATCCCCTCTTGAATCTCAAA
Found at i:6174686 original size:22 final size:23
Alignment explanation
Indices: 6174635--6174693 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 23
6174625 AAAAAAAAAG
* *
6174635 AAAAATCCCCTCTTGAATCTCAAA
1 AAAAATCTCTTCTTGAATCTC-AA
6174659 AAAAATCTCTTCTTGAATCTC-A
1 AAAAATCTCTTCTTGAATCTCAA
*
6174681 AAAAATTTCTTCT
1 AAAAATCTCTTCT
6174694 CTCCAAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 13 0.41
24 19 0.59
ACGTcount: A:0.39, C:0.24, G:0.03, T:0.34
Consensus pattern (23 bp):
AAAAATCTCTTCTTGAATCTCAA
Found at i:6174916 original size:11 final size:10
Alignment explanation
Indices: 6174890--6174915 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
6174880 AGGTTTTTTC
6174890 TTTTTTGATT
1 TTTTTTGATT
6174900 TTTTTTGATT
1 TTTTTTGATT
6174910 TTTTTT
1 TTTTTT
6174916 TTGGGTTGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.85
Consensus pattern (10 bp):
TTTTTTGATT
Found at i:6175236 original size:7 final size:7
Alignment explanation
Indices: 6175224--6175261 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
6175214 ATCTATTTAT
6175224 ACCCTAA
1 ACCCTAA
6175231 ACCCTAA
1 ACCCTAA
6175238 ACCCTAA
1 ACCCTAA
6175245 ACCCTAA
1 ACCCTAA
6175252 ACCCTAA
1 ACCCTAA
6175259 ACC
1 ACC
6175262 TATTATGTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.42, C:0.45, G:0.00, T:0.13
Consensus pattern (7 bp):
ACCCTAA
Found at i:6178979 original size:20 final size:21
Alignment explanation
Indices: 6178954--6179008 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 21
6178944 GTTAAATTTC
6178954 AAAAATTATAAAAAAAATCT-
1 AAAAATTATAAAAAAAATCTG
6178974 AAAAA-TAT-AAAAAAATCTG
1 AAAAATTATAAAAAAAATCTG
*
6178993 ATGAAATTATAAAAAA
1 A-AAAATTATAAAAAA
6179009 TACTTTTCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 10 0.33
19 4 0.13
20 8 0.27
21 3 0.10
22 5 0.17
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (21 bp):
AAAAATTATAAAAAAAATCTG
Found at i:6179346 original size:59 final size:59
Alignment explanation
Indices: 6179276--6179393 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
6179266 ATTATTTGAG
6179276 CCATTAATTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
1 CCATTAATTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
*
6179335 CCATTAGTTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
1 CCATTAATTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
6179394 TCAGTGTAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.47
Consensus pattern (59 bp):
CCATTAATTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
Found at i:6188859 original size:16 final size:16
Alignment explanation
Indices: 6188838--6188895 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 16
6188828 TTTGTGAGGA
6188838 TTTATTTTTAAAATAT
1 TTTATTTTTAAAATAT
*
6188854 TTTATTTATAAAAT-T
1 TTTATTTTTAAAATAT
* *
6188869 ATTATTTTAATAAATAAAT
1 TTTATTTT--TAAA-ATAT
6188888 TTTATTTT
1 TTTATTTT
6188896 AGAAAAAAGG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
15 7 0.21
16 13 0.39
17 4 0.12
18 1 0.03
19 8 0.24
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTATTTTTAAAATAT
Found at i:6190425 original size:2 final size:2
Alignment explanation
Indices: 6190376--6190406 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
6190366 GGTATTTAAA
*
6190376 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6190407 ATAGTATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6191019 original size:14 final size:14
Alignment explanation
Indices: 6191002--6191034 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6190992 TTTTGGTAGG
6191002 TTTTTCTTT-TTCTT
1 TTTTTCTTTGTT-TT
6191016 TTTTTCTTTGTTTT
1 TTTTTCTTTGTTTT
6191030 TTTTT
1 TTTTT
6191035 TGGGTTAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.89
15 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (14 bp):
TTTTTCTTTGTTTT
Found at i:6191785 original size:88 final size:83
Alignment explanation
Indices: 6191678--6192255 Score: 299
Period size: 88 Copynumber: 7.0 Consensus size: 83
6191668 AACAGACATT
** * *
6191678 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
6191743 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
6191766 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
6191830 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
6191849 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
6191910 ATGAGTTGAATTTTTTTG-AAAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
6191932 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
6191997 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * * *
6192020 AAAAACAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
6192085 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** * *
6192103 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
6192163 GTTGATTTTTTTG--AAA--G
64 GTTGA-TTTTTTGAAAAACTG
* * * * * * *
6192180 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
6192241 TTGATTTTTTGAAAA
65 TTGATTTTTTGAAAA
6192256 CAGAAATTGA
Statistics
Matches: 384, Mismatches: 69, Indels: 84
0.72 0.13 0.16
Matches are distributed among these distances:
76 9 0.02
77 47 0.12
78 2 0.01
79 64 0.17
80 3 0.01
81 11 0.03
82 38 0.10
83 14 0.04
84 41 0.11
85 9 0.02
86 6 0.02
87 19 0.05
88 115 0.30
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:6191882 original size:30 final size:30
Alignment explanation
Indices: 6191846--6191907 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
6191836 TTTTGAAAAA
6191846 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
6191876 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
6191906 CA
1 CA
6191908 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:6192026 original size:14 final size:14
Alignment explanation
Indices: 6192003--6192037 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
6191993 TGAGTTGATT
6192003 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
6192016 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
6192030 TTTGAAAA
1 TTTGAAAA
6192038 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:6192338 original size:72 final size:73
Alignment explanation
Indices: 6192055--6192585 Score: 411
Period size: 72 Copynumber: 6.8 Consensus size: 73
6192045 ACATGTAACC
* * * *
6192055 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
6192120 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
6192133 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
6192198 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
6192211 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
6192276 ACGTGTCT
66 GCGTGTCT
* ** * * *
6192284 TGAGGCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
6192348 GCGTGTCC
66 GCGTGTCT
*
6192356 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTGAAATGCAGAAATTGAAAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA------TTTTTTGAAA-ACAGAAATTG----
** ** *
6192421 ATGGAAATTGAAAATACCTCGACGTGTGAT
55 A---AAA-T--ACCT-CAGC---GTGT-CT
* * *
6192451 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
6192516 CAGCGTGTC-
64 CAGCGTGTCT
* *
6192525 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
6192586 ACGGAAATTG
Statistics
Matches: 366, Mismatches: 56, Indels: 65
0.75 0.11 0.13
Matches are distributed among these distances:
72 65 0.18
73 29 0.08
74 43 0.12
75 32 0.09
76 14 0.04
77 41 0.11
78 5 0.01
79 59 0.16
80 11 0.03
82 1 0.00
83 2 0.01
84 1 0.00
86 1 0.00
87 2 0.01
88 1 0.00
90 11 0.03
91 11 0.03
94 4 0.01
95 1 0.00
96 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:6192536 original size:170 final size:168
Alignment explanation
Indices: 6192252--6192728 Score: 725
Period size: 165 Copynumber: 2.9 Consensus size: 168
6192242 TGATTTTTTG
* * * ** * *
6192252 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
6192315 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* *
6192379 ATATGAGTTGATTTTTTTTTTTTGAAATGCAGAAATTGA
131 ATATGAGTTGA-TTTTTTTTTTTGAAAGGCAAAAATTGA
*
6192418 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
6192483 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
6192548 AATATGAGTTGA----TTTTTTTGAAAGGCAAAAATTGA
130 AATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
* * * *
6192583 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
6192648 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
6192713 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
6192729 GAAAAAGTAG
Statistics
Matches: 284, Mismatches: 19, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
165 157 0.55
166 27 0.10
167 1 0.00
168 30 0.11
170 69 0.24
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (168 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
Found at i:6192547 original size:74 final size:75
Alignment explanation
Indices: 6192424--6192585 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 75
6192414 TTGAAAAATG
*
6192424 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
6192489 TTTTGACAACA
65 TTTTGACAACA
* * *
6192500 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
6192563 TTTTGA-AAGGCA
65 TTTTGACAA--CA
*
6192575 AAAATTGAAAA
1 GAAATTGAAAA
6192586 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
73 2 0.03
74 42 0.55
75 12 0.16
76 21 0.27
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Found at i:6192714 original size:74 final size:75
Alignment explanation
Indices: 6192589--6192728 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
6192579 TTGAAAAACG
* *
6192589 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
6192654 TTTTGACAACA
65 TTTTGACAACA
* * *
6192665 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
6192729 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:6192909 original size:71 final size:71
Alignment explanation
Indices: 6192793--6192957 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
6192783 TGAACAACGT
* * *
6192793 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
6192858 GAGTTG
66 GAGTTG
*
6192864 AAATT-AAAACACAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTGAAAACA-AAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
6192928 TGAGTTG
65 TGAGTTG
**
6192935 ATTTTGAAAAACAAAAATT-AAAA
1 AAATTG-AAAACAAAAATTGAAAA
6192958 GGCTTAACTC
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
70 6 0.07
71 67 0.79
72 6 0.07
73 6 0.07
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:6192916 original size:211 final size:216
Alignment explanation
Indices: 6192528--6192985 Score: 610
Period size: 211 Copynumber: 2.1 Consensus size: 216
6192518 GCGTGTCCTG
* * * *
6192528 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAAACGGAAA
1 AGGCTTAACTCACCTCTCGCAATATGAGTTGA-TTTCTTGAAAGACAAAAATTGAAAAACAGAAA
* * ** **
6192593 TTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTTTTTT
65 TTGAAAATACCTCAGCG-GTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATAATTAA
* * * * *
6192658 GACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
129 AACAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTT
* *
6192723 GATTTTGAAAAAGTAGAAATTAAA
194 GATTTTGAAAAA-CAAAAATTAAA
**
6192747 AGG-TTCAAC-CTACCTCTCGCAATATGAGTTGA-TTCTTGAACA-ACGTAAATTG-AAAACAGA
1 AGGCTT-AACTC-ACCTCTCGCAATATGAGTTGATTTCTTGAA-AGACAAAAATTGAAAAACAGA
* *
6192807 AATTGAAAATACCTCAGC-GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATTA
63 AATTGAAAATACCTCAGCGGTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATAATTA
6192870 AAAC-ACA-AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGT
128 AAACAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGT
6192933 TGATTTTGAAAAACAAAAATTAAA
193 TGATTTTGAAAAACAAAAATTAAA
6192957 AGGCTTAACTCACCTCTCGCAATATGAGT
1 AGGCTTAACTCACCTCTCGCAATATGAGT
6192986 CATTTAAAAC
Statistics
Matches: 213, Mismatches: 21, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
210 33 0.15
211 68 0.32
212 3 0.01
213 4 0.02
214 37 0.17
216 24 0.11
217 14 0.07
218 3 0.01
219 27 0.13
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.26
Consensus pattern (216 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTTGATTTCTTGAAAGACAAAAATTGAAAAACAGAAAT
TGAAAATACCTCAGCGGTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATAATTAAAA
CAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA
TTTTGAAAAACAAAAATTAAA
Found at i:6192985 original size:124 final size:119
Alignment explanation
Indices: 6192833--6193061 Score: 359
Period size: 120 Copynumber: 1.9 Consensus size: 119
6192823 GCGTGACCTG
*
6192833 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAATTGAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAG-T-AAATTAAAACA-AAAACT-AAAATACCTCAGCGT
6192898 GCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
62 GCCCCGAGGCTCAACTCA-CTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
* * * *
6192957 AGGCTTAACTCACCTCTCGCAATATGAGTCATTTAAAACATAAACTAAAATACCTCAGCGTGCCC
1 AGGCTCAACTCACCTCTCGCAATATGAGTAAATTAAAACAAAAACTAAAATACCTCAGCGTGCCC
*
6193022 CGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTGAA
66 CGAGGCTCAACTCACTCTAGCAATATGAGTTGATTTTGAA
6193062 CAACGTAAAT
Statistics
Matches: 99, Mismatches: 6, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
119 25 0.25
120 33 0.33
121 4 0.04
122 9 0.09
123 1 0.01
124 27 0.27
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (119 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTAAATTAAAACAAAAACTAAAATACCTCAGCGTGCCC
CGAGGCTCAACTCACTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:6193202 original size:72 final size:71
Alignment explanation
Indices: 6193068--6193233 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
6193058 TGAACAACGT
* * * *
6193068 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
6193133 GAGTTG
66 GAGTTG
*
6193139 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
6193204 TGAGTTG
65 TGAGTTG
**
6193211 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
6193234 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:6193253 original size:276 final size:278
Alignment explanation
Indices: 6192761--6193597 Score: 1434
Period size: 263 Copynumber: 3.1 Consensus size: 278
6192751 TCAACCTACC
6192761 TCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCG
1 TCTCGCAATATGAGTTGATT-TTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCG
6192826 TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACAC-AAAATTGAAAATAC
65 TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATAC
6192890 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTA
130 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTA
6192955 AAAGGCTTAACTCACCTCTCGCAATATGAGTC-ATTTAAAACATAAACTAAAATACCTCAGCGTG
195 AAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAATACCTCAGCGTG
6193019 CCCCGAGGCTCAACTCAC-
260 CCCCGAGGCTCAACTCACT
6193037 TCTCGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGT
1 TCTCGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGT
6193102 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACC
66 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACC
6193167 TCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAA
131 TCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAA
6193232 AAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
196 AAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACT-AAAATACCTCAGCGTG
6193297 CCCCGAGGCTCAACTCACT
260 CCCCGAGGCTCAACTCACT
* *
6193316 TCTCGCAATATGAGTTGATTTTGAA-AAC-----------A-A-AAATTAAAAATACCTCAACGT
1 TCTCGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGT
* * *
6193367 GTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTG--ATTAAAACACAAAAATTGAAAATACC
66 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACC
6193430 TCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAA
131 TCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAA
*
6193495 AAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAAC-T--A--AAAATACCTCAGCGTGT
196 AAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAATACCTCAGCGTGC
6193555 CCCGAGGCTCAACTCACT
261 CCCGAGGCTCAACTCACT
6193573 TCTCGCAATATGAGTTGATTTTGAA
1 TCTCGCAATATGAGTTGATTTTGAA
6193598 AACAACAATT
Statistics
Matches: 551, Mismatches: 6, Indels: 27
0.94 0.01 0.05
Matches are distributed among these distances:
257 59 0.11
260 1 0.00
262 1 0.00
263 132 0.24
265 53 0.10
266 1 0.00
267 1 0.00
275 94 0.17
276 131 0.24
277 16 0.03
278 37 0.07
279 25 0.05
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (278 bp):
TCTCGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGT
GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACC
TCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAA
AAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAATACCTCAGCGTGC
CCCGAGGCTCAACTCACT
Found at i:6193376 original size:71 final size:71
Alignment explanation
Indices: 6193233--6193496 Score: 356
Period size: 70 Copynumber: 3.7 Consensus size: 71
6193223 AAAAATTAAA
* * * * *
6193233 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
6193296 GCCCCG
66 GCCCCG
* *
6193302 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
6193367 GTCTTG
66 GCCCCG
* * *
6193373 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
6193436 TGCCCCG
65 TGCCCCG
*
6193443 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
6193497 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 31 0.19
70 61 0.37
71 58 0.35
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:6193454 original size:70 final size:69
Alignment explanation
Indices: 6193233--6193496 Score: 339
Period size: 71 Copynumber: 3.7 Consensus size: 69
6193223 AAAAATTAAA
* ** * * *
6193233 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
6193298 CCCG
66 CCCG
* * *
6193302 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
6193367 GTCTTG
64 GCCCCG
* *
6193373 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
6193438 CCCCG
65 CCCCG
*
6193443 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-AAAAACAAAAATTAAAA
6193497 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 33 0.20
70 56 0.34
71 60 0.36
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:6200740 original size:2 final size:2
Alignment explanation
Indices: 6200676--6200721 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
6200666 ATATGGTATT
*
6200676 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6200718 TA TA
1 TA TA
6200722 ATAGTATTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6200795 original size:24 final size:25
Alignment explanation
Indices: 6200743--6200796 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
6200733 GAATATATAC
* *
6200743 ATAAGAAATATATAACTAATGGCAT
1 ATAAAAAATATATAACTAATGACAT
6200768 -TAAAAAATATAT-ACATAAT-ACAT
1 ATAAAAAATATATAAC-TAATGACAT
6200791 ATAAAA
1 ATAAAA
6200797 TACCTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.59, C:0.07, G:0.06, T:0.28
Consensus pattern (25 bp):
ATAAAAAATATATAACTAATGACAT
Found at i:6201282 original size:23 final size:25
Alignment explanation
Indices: 6201252--6201297 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
6201242 GTTAGGTGGC
6201252 TAGGTTTT-TTTTATCTT-TTTTGT
1 TAGGTTTTCTTTTATCTTCTTTTGT
*
6201275 TAGGTTTTCTTTTTTCTTCTTTT
1 TAGGTTTTCTTTTATCTTCTTTT
6201298 TTTTTTTGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 8 0.40
25 4 0.20
ACGTcount: A:0.07, C:0.09, G:0.11, T:0.74
Consensus pattern (25 bp):
TAGGTTTTCTTTTATCTTCTTTTGT
Found at i:6201316 original size:15 final size:14
Alignment explanation
Indices: 6201298--6201331 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6201288 TTCTTCTTTT
6201298 TTTTTTTGGGTTAGG
1 TTTTTTTGGG-TAGG
*
6201313 TTTTTTTTGGTAGG
1 TTTTTTTGGGTAGG
6201327 TTTTT
1 TTTTT
6201332 CTTTTTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.06, C:0.00, G:0.26, T:0.68
Consensus pattern (14 bp):
TTTTTTTGGGTAGG
Found at i:6201316 original size:16 final size:16
Alignment explanation
Indices: 6201297--6201381 Score: 58
Period size: 16 Copynumber: 5.7 Consensus size: 16
6201287 TTTCTTCTTT
6201297 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
6201313 TTTTTTTT-GG-TAGG
1 TTTTTTTTGGGTTAGG
*
6201327 TTTTTCTTT---TT--C
1 TTTTT-TTTGGGTTAGG
*** * *
6201339 TTTTTTTTTTCTTTGT
1 TTTTTTTTGGGTTAGG
6201355 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
6201371 TTTTTTTTGGG
1 TTTTTTTTGGG
6201382 GGGCTTAATG
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
11 3 0.05
12 5 0.09
14 12 0.22
15 5 0.09
16 30 0.55
ACGTcount: A:0.04, C:0.04, G:0.21, T:0.72
Consensus pattern (16 bp):
TTTTTTTTGGGTTAGG
Found at i:6201347 original size:17 final size:17
Alignment explanation
Indices: 6201327--6201362 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
6201317 TTTTGGTAGG
6201327 TTTTTCTTT-TTCTTTTT
1 TTTTTCTTTGTT-TTTTT
6201344 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTGTTTTTTT
6201361 TT
1 TT
6201363 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.89
18 2 0.11
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTGTTTTTTT
Found at i:6201357 original size:12 final size:11
Alignment explanation
Indices: 6201327--6201360 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
6201317 TTTTGGTAGG
6201327 TTTTTCTTTTTC
1 TTTTT-TTTTTC
6201339 TTTTTTTTTTC
1 TTTTTTTTTTC
6201350 TTTGTTTTTTT
1 TTT-TTTTTTT
6201361 TTGGGTTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:6204296 original size:17 final size:19
Alignment explanation
Indices: 6204282--6204388 Score: 163
Period size: 18 Copynumber: 5.9 Consensus size: 19
6204272 ATAATCTTCA
6204282 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
6204301 AT-A-ATACAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6204318 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6204336 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6204353 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6204371 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
6204389 ATATATGATT
Statistics
Matches: 80, Mismatches: 2, Indels: 12
0.85 0.02 0.13
Matches are distributed among these distances:
17 31 0.39
18 35 0.44
19 14 0.17
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:6204328 original size:35 final size:35
Alignment explanation
Indices: 6204282--6204388 Score: 169
Period size: 35 Copynumber: 3.0 Consensus size: 35
6204272 ATAATCTTCA
6204282 ATGATATGCAATCTTAGATATAATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATAATACAATCTTAGAT
*
6204318 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATAATACAATCTTAGAT
*
6204353 ATGATTGCAATCTTAGATATGATATGCAATCTTAGA
1 ATGATTGCAATCTTAGATAT-A-ATACAATCTTAGA
6204389 ATATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
35 49 0.74
36 5 0.08
37 12 0.18
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATAATACAATCTTAGAT
Found at i:6210167 original size:14 final size:13
Alignment explanation
Indices: 6210103--6210168 Score: 78
Period size: 14 Copynumber: 4.7 Consensus size: 13
6210093 TTTCAAAAGC
6210103 AAAAAAAAAGAAA
1 AAAAAAAAAGAAA
*
6210116 AAAAAGTAAAGAAA
1 AAAAA-AAAAGAAA
6210130 AAGAGAAAAAAGAAA
1 AA-A-AAAAAAGAAA
6210145 AAAGAAAAAAGAAA
1 AAA-AAAAAAGAAA
6210159 AAAATAAAAA
1 AAAA-AAAAA
6210169 TAGAGAGGCC
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
13 6 0.13
14 29 0.62
15 10 0.21
16 2 0.04
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (13 bp):
AAAAAAAAAGAAA
Found at i:6210167 original size:29 final size:29
Alignment explanation
Indices: 6210106--6210168 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
6210096 CAAAAGCAAA
* *
6210106 AAAAAAGAAAAAAAAGTAAAGAAAAAGAG
1 AAAAAAGAAAAAAAAGAAAAGAAAAAAAG
*
6210135 AAAAAAGAAAAAAGAA-AAAAGAAAAAAAT
1 AAAAAAGAAAAAA-AAGAAAAGAAAAAAAG
6210164 AAAAA
1 AAAAA
6210169 TAGAGAGGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 28 0.93
30 2 0.07
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (29 bp):
AAAAAAGAAAAAAAAGAAAAGAAAAAAAG
Found at i:6210168 original size:7 final size:7
Alignment explanation
Indices: 6210106--6210161 Score: 78
Period size: 7 Copynumber: 7.9 Consensus size: 7
6210096 CAAAAGCAAA
6210106 AAAAAAG
1 AAAAAAG
6210113 AAAAAA-
1 AAAAAAG
*
6210119 AAGTAAAG
1 AA-AAAAG
6210127 AAAAAGAG
1 AAAAA-AG
6210135 AAAAAAG
1 AAAAAAG
6210142 AAAAAAG
1 AAAAAAG
6210149 AAAAAAG
1 AAAAAAG
6210156 AAAAAA
1 AAAAAA
6210162 ATAAAAATAG
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
6 2 0.05
7 33 0.75
8 9 0.20
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:6211945 original size:206 final size:207
Alignment explanation
Indices: 6211407--6212406 Score: 1538
Period size: 207 Copynumber: 4.8 Consensus size: 207
6211397 CAGGTTAAAG
*
6211407 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAAATCCAAGATGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * * * *
6211472 GCTTACAAGGAACAAATCGAGGACATAGCTGATTTGGTTTTCACGTGCTTACGAGGAAGGAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* * *
6211537 TAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAAATTAAATTTTGGCGTCTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCGAC
*
6211602 AGAGGGCAGACA
196 GGAGGGCAGACA
* * * *
6211614 CATAGAAGATCTGGCCTTCAAATGTTTATACTGAAGCAAGATCCAAGCTGGTTTGGCATCCTTAT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * *
6211679 GCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* * *
6211744 TAAGATGATTTGGCATTTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAT
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCGAC
*
6211809 GGAGAGCAGACA
196 GGAGGGCAGACA
*
6211821 CATAGCAGATCTGGCCTTCA-ATGTTTATACTGAAGCAAGATCCAAGCTGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * * *
6211885 GCTTACAAGGAACAAATTGAAGACATAGCTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* *
6211950 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTTTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCGAC
6212015 GGAGGGCAGACA
196 GGAGGGCAGACA
6212027 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * * *
6212092 GCTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
*
6212157 TAAGATGATCTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCGAC
* * *
6212222 GTAGGACAAACA
196 GGAGGGCAGACA
* ** * * * *
6212234 TATAGCAGATCTAACCTTCAGATGATGAGACTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
** * *
6212298 GCTTACAAGGAGTAAATCGAAGACATAGCTGATTTGGCTTTCGCGTGTTTACGCTGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
*
6212363 TAAGATGATTTGGCATCTCTGTATTTTCAG-GAAACAAATTGAAG
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAG-AACAAATTGAAG
6212407 AAGCAGATTT
Statistics
Matches: 734, Mismatches: 57, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
205 1 0.00
206 321 0.44
207 412 0.56
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCGAC
GGAGGGCAGACA
Found at i:6212195 original size:413 final size:414
Alignment explanation
Indices: 6211407--6212406 Score: 1558
Period size: 413 Copynumber: 2.4 Consensus size: 414
6211397 CAGGTTAAAG
*
6211407 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAAATCCAAGATGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * * * *
6211472 GCTTACAAGGAACAAATCGAGGACATAGCTGATTTGGTTTTCACGTGCTTACGAGGAAGGAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* * *
6211537 TAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAAATTAAATTTTGGCGTCTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCGAC
*
6211602 AGAGGGCAGACACATAGAAGATCTGGCCTTCAAATGTTTATACTGAAGCAAGATCCAAGCTGGTT
196 AGAGGGCAGACACATAGAAGATCTGGCCTTCAAATGTTTATACTGAAGCAAGATCCAAGATGGTT
6211667 TGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACGTGCTTACG
261 TGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACGTGCTTACG
* *
6211732 ATGAAGCAAATCTAAGATGATTTGGCATTTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTC
326 ATGAAGCAAATCTAAGATGATCTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTC
* *
6211797 TCCATATTCGATGGA-GAGCAGACA
391 TCCATATTCGACGGAGGA-CAAACA
*
6211821 CATAGCAGATCTGGCCTTCA-ATGTTTATACTGAAGCAAGATCCAAGCTGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * * *
6211885 GCTTACAAGGAACAAATTGAAGACATAGCTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* *
6211950 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTTTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCGAC
* * *
6212015 GGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTT
196 AGAGGGCAGACACATAGAAGATCTGGCCTTCAAATGTTTATACTGAAGCAAGATCCAAGATGGTT
* * * *
6212080 TGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACG
261 TGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACGTGCTTACG
* * *
6212145 CTGAAGCAAGTCTAAGATGATCTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTC
326 ATGAAGCAAATCTAAGATGATCTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTC
*
6212210 TCCATATTCGACGTAGGACAAACA
391 TCCATATTCGACGGAGGACAAACA
* ** * * * *
6212234 TATAGCAGATCTAACCTTCAGATGATGAGACTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
** * *
6212298 GCTTACAAGGAGTAAATCGAAGACATAGCTGATTTGGCTTTCGCGTGTTTACGCTGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
*
6212363 TAAGATGATTTGGCATCTCTGTATTTTCAG-GAAACAAATTGAAG
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAG-AACAAATTGAAG
6212407 AAGCAGATTT
Statistics
Matches: 534, Mismatches: 49, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
412 1 0.00
413 498 0.93
414 35 0.07
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (414 bp):
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCGAC
AGAGGGCAGACACATAGAAGATCTGGCCTTCAAATGTTTATACTGAAGCAAGATCCAAGATGGTT
TGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACGTGCTTACG
ATGAAGCAAATCTAAGATGATCTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTC
TCCATATTCGACGGAGGACAAACA
Found at i:6212868 original size:18 final size:18
Alignment explanation
Indices: 6212801--6212979 Score: 256
Period size: 18 Copynumber: 9.9 Consensus size: 18
6212791 ATAATCTTCA
6212801 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
6212820 GTGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
6212839 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
6212856 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
6212874 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
6212891 ATGATTGCAATATTAGAT
1 ATGATTGCAATCTTAGAT
* *
6212909 ATGA-TACAATATTAGAT
1 ATGATTGCAATCTTAGAT
6212926 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
6212944 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
6212962 ATGATATGCAATCTTAGA
1 ATGAT-TGCAATCTTAGA
6212980 AGATATGATT
Statistics
Matches: 146, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
17 48 0.33
18 65 0.45
19 33 0.23
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:6212871 original size:35 final size:35
Alignment explanation
Indices: 6212809--6212979 Score: 279
Period size: 35 Copynumber: 4.8 Consensus size: 35
6212799 CAATGATATG
*
6212809 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
6212845 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
6212880 CAATCTTAGATATGATTGCAATATTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
* *
6212915 CAATATTAGATATGATTGCAATCTTAGATATGATTG
1 CAATCTTAGATATGATTGCAATCTTAGATATGA-TA
6212951 CAATCTTAGATATGATATGCAATCTTAGA
1 CAATCTTAGATATGAT-TGCAATCTTAGA
6212980 AGATATGATT
Statistics
Matches: 127, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
35 84 0.66
36 31 0.24
37 12 0.09
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:6214258 original size:43 final size:43
Alignment explanation
Indices: 6214194--6214302 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
6214184 TTGCAGCGCT
* * ** *
6214194 CCGCTAAAGAACATGACCTTTAGCGGCGCTTTTTCAACAAACG
1 CCGCTAAAAAACATGACCTTTAACGGAACTTTTCCAACAAACG
* *
6214237 CCGCTAAAAAACATGATCTTTAACGGAACTTTTCCCACAAACG
1 CCGCTAAAAAACATGACCTTTAACGGAACTTTTCCAACAAACG
*
6214280 CCGCTAAAAAACATAACCTTTAA
1 CCGCTAAAAAACATGACCTTTAA
6214303 AAAATGTTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.37, C:0.28, G:0.13, T:0.23
Consensus pattern (43 bp):
CCGCTAAAAAACATGACCTTTAACGGAACTTTTCCAACAAACG
Found at i:6217228 original size:33 final size:36
Alignment explanation
Indices: 6217164--6217235 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 36
6217154 GTAAGTGTTC
*
6217164 TAATACTATATCATATATACATATGCATTTTTCATAT
1 TAATACTATATCATATATACATATG-ATTTTTAATAT
*
6217201 TAATA-TATAT-ATATATATATATG-TTTTTAATAT
1 TAATACTATATCATATATACATATGATTTTTAATAT
6217234 TA
1 TA
6217236 TATTATCATG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 11 0.33
35 12 0.36
36 5 0.15
37 5 0.15
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (36 bp):
TAATACTATATCATATATACATATGATTTTTAATAT
Found at i:6217230 original size:27 final size:27
Alignment explanation
Indices: 6217200--6217263 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
6217190 ATTTTTCATA
6217200 TTAATA-TATATATAT-ATATATATGTTT
1 TTAATATTATAT-TATCATATATATG-TT
*
6217227 TTAATATTATATTATCATGTATATGTT
1 TTAATATTATATTATCATATATATGTT
6217254 TTAATATTAT
1 TTAATATTAT
6217264 TAGCTATCTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
27 21 0.62
28 13 0.38
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.56
Consensus pattern (27 bp):
TTAATATTATATTATCATATATATGTT
Found at i:6217449 original size:21 final size:21
Alignment explanation
Indices: 6217408--6217449 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6217398 TCTAATATAA
* *
6217408 ATATATATATCATATAGGTTT
1 ATATACATATCATACAGGTTT
*
6217429 ATATACATATCATACATGTTT
1 ATATACATATCATACAGGTTT
6217450 CTTTATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
ATATACATATCATACAGGTTT
Found at i:6217854 original size:21 final size:21
Alignment explanation
Indices: 6217830--6217904 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 21
6217820 ACTATTATTT
* *
6217830 TATTTATTTTTATTCCTAGTA
1 TATTTATTTTTAATACTAGTA
* *
6217851 TATTTATTATTAATATTAGTA
1 TATTTATTTTTAATACTAGTA
* *
6217872 TATGTATTTTATTATACGTA-TA
1 TATTTATTTT-TAATAC-TAGTA
*
6217894 TATATATTTTT
1 TATTTATTTTT
6217905 TATAAATAGT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
21 26 0.60
22 15 0.35
23 2 0.05
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (21 bp):
TATTTATTTTTAATACTAGTA
Done.